Query 043065
Match_columns 89
No_of_seqs 129 out of 1067
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ao0_A Glutamine phosphoribosy 99.9 1.8E-21 6.1E-26 145.7 10.2 75 13-88 125-199 (459)
2 1ecf_A Glutamine phosphoribosy 99.8 3.6E-20 1.2E-24 140.2 9.0 76 13-88 125-214 (504)
3 1jgt_A Beta-lactam synthetase; 99.8 3.1E-20 1.1E-24 140.8 5.7 78 2-88 79-162 (513)
4 1xff_A D-fructose-6-, glucosam 99.8 2.8E-19 9.7E-24 124.0 9.7 73 12-88 120-197 (240)
5 1ct9_A Asparagine synthetase B 99.8 2.2E-19 7.7E-24 137.1 5.8 70 11-88 94-165 (553)
6 1q15_A CARA; CMPR, (2S,5S)-5-c 99.7 3.7E-19 1.3E-23 134.6 3.1 78 2-88 59-163 (503)
7 2bpl_A Glucosamine--fructose-6 99.7 1.1E-17 3.8E-22 128.6 10.4 73 12-88 120-197 (608)
8 3mdn_A Glutamine aminotransfer 99.7 1.4E-17 4.9E-22 118.1 6.5 75 11-85 140-229 (274)
9 1ea0_A Glutamate synthase [NAD 99.6 4.7E-15 1.6E-19 122.7 8.8 83 5-87 263-372 (1479)
10 1ofd_A Ferredoxin-dependent gl 99.6 1.8E-14 6.1E-19 119.5 10.2 81 6-87 261-371 (1520)
11 1te5_A Conserved hypothetical 99.5 5.6E-15 1.9E-19 103.7 5.6 73 12-84 125-228 (257)
12 1vk9_A Conserved hypothetical 78.1 0.46 1.6E-05 30.8 0.1 26 43-69 27-52 (151)
13 4ggd_C Mitotic checkpoint seri 62.4 1.6 5.4E-05 19.7 -0.0 11 2-12 7-17 (26)
14 1nwd_B GAD, glutamate decarbox 56.5 13 0.00046 16.8 2.8 17 11-27 3-19 (28)
15 1yd6_A UVRC; DNA binding prote 53.7 17 0.00059 21.4 3.6 20 54-74 16-35 (99)
16 1yd0_A Uvrabc system protein C 44.0 24 0.00082 20.6 3.1 19 54-74 16-34 (96)
17 1n9b_A Penicillinase, beta-lac 39.6 64 0.0022 21.0 5.1 32 30-61 3-36 (265)
18 2h4p_B MENT, heterochromatin-a 38.8 32 0.0011 16.0 2.7 20 54-73 10-29 (34)
19 1hle_B Horse leukocyte elastas 38.2 31 0.0011 15.7 2.7 19 55-73 10-28 (31)
20 2xn6_B Thyroxine-binding globu 35.9 37 0.0013 15.9 2.7 19 55-73 11-29 (35)
21 3ndd_B Alpha-1-antitrypsin; se 34.9 40 0.0014 15.9 3.0 19 55-73 12-30 (36)
22 1m93_C Serine proteinase inhib 34.6 43 0.0015 16.3 2.8 21 52-73 15-35 (41)
23 1m40_A TEM-1, beta-lactamase T 34.2 77 0.0026 20.5 4.8 32 31-62 4-37 (263)
24 4afx_B Protein Z dependent pro 32.8 44 0.0015 15.8 2.7 19 55-73 12-30 (36)
25 1as4_B Antichymotrypsin, ACT; 32.7 38 0.0013 16.1 2.3 21 53-73 11-31 (37)
26 2riv_B Thyroxine-binding globu 30.9 51 0.0017 15.9 2.7 19 55-73 16-34 (40)
27 1vcc_A DNA topoisomerase I; DN 27.5 51 0.0018 18.7 2.5 20 53-72 55-74 (77)
28 3cpt_A Mitogen-activated prote 26.3 74 0.0025 20.2 3.4 22 34-55 27-48 (143)
29 2p74_A Beta-lactamase CTX-M-9A 26.3 1.3E+02 0.0045 19.3 5.0 30 31-61 5-36 (263)
30 3f02_C Neuroserpin; cleaved fo 25.1 75 0.0026 16.0 3.0 19 55-73 14-32 (48)
31 1mtp_B Serine proteinase inhib 24.9 67 0.0023 15.9 2.5 21 52-74 14-34 (43)
32 1hzo_A Beta-lactamase; mixed a 21.9 1.7E+02 0.0058 19.0 5.0 30 31-61 6-37 (271)
33 1bsg_A Beta lactamase, penicil 21.8 1.2E+02 0.0041 19.5 4.0 27 31-57 3-31 (266)
34 3c5a_A Class A carbapenemase K 20.3 1.6E+02 0.0055 18.9 4.4 27 31-57 4-32 (264)
35 2qv6_A MJ0145, GTP cyclohydrol 20.1 85 0.0029 21.8 3.0 57 1-64 8-65 (268)
No 1
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.86 E-value=1.8e-21 Score=145.74 Aligned_cols=75 Identities=40% Similarity=0.540 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
.||||++++++.++++.++.+++.+++++|+|+|||+++++++++++||++|+|||+||.. ++.++||||.+||.
T Consensus 125 ~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~ 199 (459)
T 1ao0_A 125 SSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFD 199 (459)
T ss_dssp SCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECSSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHH
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEeCCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHh
Confidence 7999999999999987899999999999999999999999999999999999999999998 57899999998873
No 2
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.82 E-value=3.6e-20 Score=140.17 Aligned_cols=76 Identities=33% Similarity=0.521 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHhhcC---------CChHHHHHHHHhhccCceEEEEEe-CCEEEEEEcCCCCccEEEEEec--C--CeE
Q 043065 13 SSDTVVVLHLIPISKA---------RPFFLRILDVCEKLEGAYSMVFVT-EDKLVAVRDPYGFMPLVMGRRS--N--GAL 78 (89)
Q Consensus 13 ~~DsEvi~~ll~~~~~---------~~~~~a~~~~~~~l~G~fa~~i~~-~~~l~~~rD~~G~rPL~~g~~~--~--~~~ 78 (89)
.||||++++++.++.. .++.+++.+++++++|+||+++|+ +++++++||++|+|||+||..+ + +.+
T Consensus 125 ~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~~~~~l~a~RD~~GirPL~~g~~~~~~g~~~~ 204 (504)
T 1ecf_A 125 TSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEY 204 (504)
T ss_dssp SCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEETTTEEEEEECTTCCSCCEEEEEECSSSCEEE
T ss_pred CCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEEcCCeEEEEECCCCCCceEEeecccCCCceEE
Confidence 7999999999988642 367899999999999999999997 5789999999999999999972 2 379
Q ss_pred EEEecccccC
Q 043065 79 VFASETCALF 88 (89)
Q Consensus 79 ~~aSE~~al~ 88 (89)
+||||.+||.
T Consensus 205 ~~ASE~~al~ 214 (504)
T 1ecf_A 205 MVASESVALD 214 (504)
T ss_dssp EEESSTHHHH
T ss_pred EEEeCchHhh
Confidence 9999999873
No 3
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.80 E-value=3.1e-20 Score=140.84 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=70.2
Q ss_pred Ccccccee------eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCEEEEEEcCCCCccEEEEEecC
Q 043065 2 LKNVQPFV------AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSN 75 (89)
Q Consensus 2 ~~n~qp~~------~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~l~~~rD~~G~rPL~~g~~~~ 75 (89)
|+|++.|+ +.+.||||+|++++++++ .+++++|+|+|||++||.++++++||++|+|||||+.. +
T Consensus 79 IyN~~eLr~~L~~~f~t~sDtEvil~l~~~~g--------~~~~~~l~G~fA~~i~d~~~l~~aRD~~G~kPLyy~~~-~ 149 (513)
T 1jgt_A 79 IYNRDELLSVLPAGPAPEGDAELVLRLLERYD--------LHAFRLVNGRFATVVRTGDRVLLATDHAGSVPLYTCVA-P 149 (513)
T ss_dssp ESCHHHHHHTSCSSCCCSSHHHHHHHHHHHHG--------GGGGGTCCEEEEEEEEETTEEEEEECTTCCSCCEEEEE-T
T ss_pred EeCHHHHHHHhCCCCCCCCHHHHHHHHHHHHh--------HHhHhhcCeeEEEEEEECCEEEEEECCCCCceeEEEEe-C
Confidence 67777764 457999999999999998 67999999999999999877999999999999999988 5
Q ss_pred CeEEEEecccccC
Q 043065 76 GALVFASETCALF 88 (89)
Q Consensus 76 ~~~~~aSE~~al~ 88 (89)
+.++||||.++|.
T Consensus 150 ~~~~faSe~~aL~ 162 (513)
T 1jgt_A 150 GEVRASTEAKALA 162 (513)
T ss_dssp TEEEEESCHHHHH
T ss_pred CEEEEcchHHHHH
Confidence 7999999998874
No 4
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.80 E-value=2.8e-19 Score=124.01 Aligned_cols=73 Identities=33% Similarity=0.458 Sum_probs=66.0
Q ss_pred cCChHHHHHHHHHhhc--CCChHHHHHHHHhhccCceEEEEEe---CCEEEEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 12 YSSDTVVVLHLIPISK--ARPFFLRILDVCEKLEGAYSMVFVT---EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~--~~~~~~a~~~~~~~l~G~fa~~i~~---~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
+.||||++++++++++ +.++.+++++++++|+|+|||+++| +++++++||+ |||+|+.. ++.++||||.+|
T Consensus 120 ~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~a 195 (240)
T 1xff_A 120 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLA 195 (240)
T ss_dssp SCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHH
Confidence 3899999999999875 3578999999999999999999997 4789999997 99999998 578999999999
Q ss_pred cC
Q 043065 87 LF 88 (89)
Q Consensus 87 l~ 88 (89)
|.
T Consensus 196 l~ 197 (240)
T 1xff_A 196 LL 197 (240)
T ss_dssp TT
T ss_pred HH
Confidence 85
No 5
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=99.77 E-value=2.2e-19 Score=137.12 Aligned_cols=70 Identities=31% Similarity=0.461 Sum_probs=63.6
Q ss_pred ccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEe--CCEEEEEEcCCCCccEEEEEecCCeEEEEecccccC
Q 043065 11 GYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMGRRSNGALVFASETCALF 88 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al~ 88 (89)
++.||||+|++++++++ .+++++|+|+|||++|| .++++++||++|+|||||+...++.++||||.++|.
T Consensus 94 ~s~sDtEvil~l~~~~g--------~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~ 165 (553)
T 1ct9_A 94 QTGSDCEVILALYQEKG--------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV 165 (553)
T ss_dssp CSCCTTHHHHHHHHHHT--------TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT
T ss_pred CCCCcHHHHHHHHHHHH--------HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHH
Confidence 45899999999999998 67999999999999999 489999999999999999995356899999999985
No 6
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.74 E-value=3.7e-19 Score=134.61 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=68.3
Q ss_pred Ccccc---cee------eccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeCCE-EEEEEcCCCCccEEEE
Q 043065 2 LKNVQ---PFV------AGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDK-LVAVRDPYGFMPLVMG 71 (89)
Q Consensus 2 ~~n~q---p~~------~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~~~-l~~~rD~~G~rPL~~g 71 (89)
|+|++ .|+ +.+.||||+|++++++++ .+++++++|+|||++||+++ ++++||++|+|||||+
T Consensus 59 I~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~~g--------~~~l~~l~G~fa~~i~d~~~~l~~aRD~~G~rPL~y~ 130 (503)
T 1q15_A 59 LYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG--------ANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVV 130 (503)
T ss_dssp CSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC--------GGGGGGCCSSEEEEEECTTSCEEEEECSSSSSCCEEE
T ss_pred EeCCCChHHHHHHhhCCCCCCChHHHHHHHHHHHH--------HHHHHHcCEEEEEEEEeCCCCEEEEECCCCCeeEEEE
Confidence 67777 664 457999999999999998 68999999999999999432 9999999999999999
Q ss_pred EecCCe-----------------EEEEecccccC
Q 043065 72 RRSNGA-----------------LVFASETCALF 88 (89)
Q Consensus 72 ~~~~~~-----------------~~~aSE~~al~ 88 (89)
.. ++. ++||||.+||.
T Consensus 131 ~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~ 163 (503)
T 1q15_A 131 QG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQ 163 (503)
T ss_dssp ES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTT
T ss_pred Ee-CCceecccccccccccCCcceEEecchHHHH
Confidence 87 567 89999999875
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.74 E-value=1.1e-17 Score=128.59 Aligned_cols=73 Identities=33% Similarity=0.461 Sum_probs=66.2
Q ss_pred cCChHHHHHHHHHhhc--CCChHHHHHHHHhhccCceEEEEEeC---CEEEEEEcCCCCccEEEEEecCCeEEEEecccc
Q 043065 12 YSSDTVVVLHLIPISK--ARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~--~~~~~~a~~~~~~~l~G~fa~~i~~~---~~l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~a 86 (89)
++||||+++++++++. +.++.+++++++++|+|+|||++++. ++++++||+ |||+||.. ++.++||||.+|
T Consensus 120 s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~a 195 (608)
T 2bpl_A 120 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLA 195 (608)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHH
Confidence 4899999999999874 34899999999999999999999993 789999997 99999998 578999999999
Q ss_pred cC
Q 043065 87 LF 88 (89)
Q Consensus 87 l~ 88 (89)
|.
T Consensus 196 l~ 197 (608)
T 2bpl_A 196 LL 197 (608)
T ss_dssp TT
T ss_pred HH
Confidence 85
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.71 E-value=1.4e-17 Score=118.10 Aligned_cols=75 Identities=24% Similarity=0.177 Sum_probs=65.3
Q ss_pred ccCChHHHHHHHHHhhc-CCChHHHHHHHHhhccCc-----------eEEEEEeCCEEEEEEcC-CCCccEEEEEecC--
Q 043065 11 GYSSDTVVVLHLIPISK-ARPFFLRILDVCEKLEGA-----------YSMVFVTEDKLVAVRDP-YGFMPLVMGRRSN-- 75 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~-~~~~~~a~~~~~~~l~G~-----------fa~~i~~~~~l~~~rD~-~G~rPL~~g~~~~-- 75 (89)
.+.||||++++++..++ +.++.+++.+++++|+|. |+++++|+++|+++||+ .|.+||+|+..++
T Consensus 140 ~~~TDSEvi~~l~~~~~~~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~~~l~a~Rd~~~G~~Pll~~~~~~~~ 219 (274)
T 3mdn_A 140 KGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHAR 219 (274)
T ss_dssp CSCCHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECSSCEEEEEEESSSCCCCCEEEEETTT
T ss_pred CCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcCCEEEEEECCCCCCCCeEEEEEeCCC
Confidence 35899999999996554 468899999999999998 88888999999999998 9999998888743
Q ss_pred CeEEEEeccc
Q 043065 76 GALVFASETC 85 (89)
Q Consensus 76 ~~~~~aSE~~ 85 (89)
+.++||||..
T Consensus 220 ~~~~vASE~l 229 (274)
T 3mdn_A 220 QGWAVVSEPL 229 (274)
T ss_dssp TEEEEESSCC
T ss_pred CEEEEEeccc
Confidence 6899999984
No 9
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.58 E-value=4.7e-15 Score=122.65 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=69.7
Q ss_pred ccceeeccCChHHHHHHHHHhh--cCCChHHHHH-------------------------HHHhhccCceEEEEEeCCEEE
Q 043065 5 VQPFVAGYSSDTVVVLHLIPIS--KARPFFLRIL-------------------------DVCEKLEGAYSMVFVTEDKLV 57 (89)
Q Consensus 5 ~qp~~~~~~~DsEvi~~ll~~~--~~~~~~~a~~-------------------------~~~~~l~G~fa~~i~~~~~l~ 57 (89)
.-|+.+.+.||||++.++++.. .+.++.+|++ .+++.++|+||+++.+++.++
T Consensus 263 ~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg~~l~ 342 (1479)
T 1ea0_A 263 LKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVV 342 (1479)
T ss_dssp HCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSSSEEE
T ss_pred cCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeCCEEE
Confidence 3577788999999996666541 2356777665 447899999999999999999
Q ss_pred EEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 58 AVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 58 ~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
++|||+|.|||+|+..+++.+++|||.++|
T Consensus 343 a~~DrnGlRPl~~g~t~d~~~v~ASE~gal 372 (1479)
T 1ea0_A 343 GGMDRNGLRPMRYTITTDGLIIGGSETGMV 372 (1479)
T ss_dssp EECCTTCCSCCEEEEETTSEEEECSSSTTS
T ss_pred EEecCCCCcceEEEEECCCEEEEEcccccc
Confidence 999999999999999865689999999997
No 10
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.55 E-value=1.8e-14 Score=119.46 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=69.1
Q ss_pred cceeeccCChHHHHHHHHH---hhcCCChHHHHHHH---------------------------HhhccCceEEEEEeCCE
Q 043065 6 QPFVAGYSSDTVVVLHLIP---ISKARPFFLRILDV---------------------------CEKLEGAYSMVFVTEDK 55 (89)
Q Consensus 6 qp~~~~~~~DsEvi~~ll~---~~~~~~~~~a~~~~---------------------------~~~l~G~fa~~i~~~~~ 55 (89)
-|+.+.+.||||++.++++ .. +.++.+|+..+ ++.++|+||+++.+++.
T Consensus 261 ~p~i~~~~SDSe~ld~~lelL~~~-g~~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg~~ 339 (1520)
T 1ofd_A 261 TPIVNQANSDSYNLDSALELLVRT-GRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKI 339 (1520)
T ss_dssp CCSCCTTSCHHHHHHHHHHHHHHT-TCCHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECSSE
T ss_pred CCcCCCCCCcHHHHHHHHHHHHhc-CCCHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeCCE
Confidence 4567889999999987666 43 45777777544 68899999999999999
Q ss_pred EEEEEcCCCCccEEEEEecCCeEEEEeccccc
Q 043065 56 LVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87 (89)
Q Consensus 56 l~~~rD~~G~rPL~~g~~~~~~~~~aSE~~al 87 (89)
++++|||+|.|||+|+..+++.+++|||.++|
T Consensus 340 l~a~~DrnGlRPl~~~~t~d~~~v~ASE~gal 371 (1520)
T 1ofd_A 340 VGAGLDRNGLRPARYCITKDDYIVLGSEAGVV 371 (1520)
T ss_dssp EEEEECTTCCSCCEEEEETTCCEEEESSTTCS
T ss_pred EEEEecCCCCCceEEEEeCCCEEEEEcccccc
Confidence 99999999999999999965679999999997
No 11
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.54 E-value=5.6e-15 Score=103.68 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHhhcC-----CChHHHHHHHHhhcc------CceEEEEEeCCEEEEEEc----------CCCCccEEE
Q 043065 12 YSSDTVVVLHLIPISKA-----RPFFLRILDVCEKLE------GAYSMVFVTEDKLVAVRD----------PYGFMPLVM 70 (89)
Q Consensus 12 ~~~DsEvi~~ll~~~~~-----~~~~~a~~~~~~~l~------G~fa~~i~~~~~l~~~rD----------~~G~rPL~~ 70 (89)
+.||||++++++.+... ....+++.++++++. |.|++++.++++|+++|| |+|.|||+.
T Consensus 125 s~TDSEvi~~li~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~G~~n~~l~~g~~l~a~rd~~L~~~~~~~p~g~rpL~~ 204 (257)
T 1te5_A 125 GETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKD 204 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESSSCEEEECSSCEEEEEEESSCCCEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcCcEEEEEEcCCEEEEEEcCCceEEeecCCCccccccc
Confidence 58999999999987542 123456666655554 999999999999999999 999999986
Q ss_pred -------EE---ecCCeEEEEecc
Q 043065 71 -------GR---RSNGALVFASET 84 (89)
Q Consensus 71 -------g~---~~~~~~~~aSE~ 84 (89)
|. ..++.++||||+
T Consensus 205 ~~~~i~~g~~~~~~~~~~vvASE~ 228 (257)
T 1te5_A 205 ADLTVDFHAETTPDDVVTVIATEP 228 (257)
T ss_dssp SSEEEEECCCSSTTCEEEEEESSC
T ss_pred ccceeecccccCCCCCEEEEEeCc
Confidence 31 112368999996
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=78.05 E-value=0.46 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.3
Q ss_pred cCceEEEEEeCCEEEEEEcCCCCccEE
Q 043065 43 EGAYSMVFVTEDKLVAVRDPYGFMPLV 69 (89)
Q Consensus 43 ~G~fa~~i~~~~~l~~~rD~~G~rPL~ 69 (89)
+|.||+++.+++.++-..++ |.+|||
T Consensus 27 e~~~ScVv~~~~~i~ts~~r-Gv~pL~ 52 (151)
T 1vk9_A 27 KKDLSLLAYSGRSIFESKDS-GLKPVV 52 (151)
T ss_dssp HTTCSEEEESSSEEEEECCS-TTHHHH
T ss_pred hCCeeEEEecCCEEEEeCCc-ChHHHH
Confidence 68899999767787777775 999986
No 13
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=62.40 E-value=1.6 Score=19.67 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=8.3
Q ss_pred Cccccceeecc
Q 043065 2 LKNVQPFVAGY 12 (89)
Q Consensus 2 ~~n~qp~~~~~ 12 (89)
.+|.||++.+.
T Consensus 7 kenvqplrqgr 17 (26)
T 4ggd_C 7 KENVQPLRQGR 17 (26)
T ss_pred hhccchhhccc
Confidence 47999997653
No 14
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=56.51 E-value=13 Score=16.76 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=13.9
Q ss_pred ccCChHHHHHHHHHhhc
Q 043065 11 GYSSDTVVVLHLIPISK 27 (89)
Q Consensus 11 ~~~~DsEvi~~ll~~~~ 27 (89)
+..+|||+-+.++..|.
T Consensus 3 hkktdsevqlemitawk 19 (28)
T 1nwd_B 3 HKKTDSEVQLEMITAWK 19 (28)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHH
Confidence 34799999999998873
No 15
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=53.71 E-value=17 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.1
Q ss_pred CEEEEEEcCCCCccEEEEEec
Q 043065 54 DKLVAVRDPYGFMPLVMGRRS 74 (89)
Q Consensus 54 ~~l~~~rD~~G~rPL~~g~~~ 74 (89)
-.+|..+|..| ++||+|...
T Consensus 16 pGVY~~~d~~g-~vlYVGKAk 35 (99)
T 1yd6_A 16 PGCYLMKDKHG-TVIYVGKAK 35 (99)
T ss_dssp CEEEEEECSSC-CEEEEEEES
T ss_pred CeEEEEEcCCC-CEEEEecCc
Confidence 57899999888 899999984
No 16
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=44.01 E-value=24 Score=20.65 Aligned_cols=19 Identities=16% Similarity=0.524 Sum_probs=15.6
Q ss_pred CEEEEEEcCCCCccEEEEEec
Q 043065 54 DKLVAVRDPYGFMPLVMGRRS 74 (89)
Q Consensus 54 ~~l~~~rD~~G~rPL~~g~~~ 74 (89)
-.+|...| .| ++||+|...
T Consensus 16 pGVY~~~d-~g-~vlYVGKAk 34 (96)
T 1yd0_A 16 PGVYIFKN-KG-VPIYIGKAK 34 (96)
T ss_dssp CEEEEEEE-TT-EEEEEEEES
T ss_pred CeEEEEEC-CC-eEEEEecCc
Confidence 47888899 66 899999884
No 17
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A* 3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A* ...
Probab=39.63 E-value=64 Score=21.02 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhhccCceEEEEEe--CCEEEEEEc
Q 043065 30 PFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRD 61 (89)
Q Consensus 30 ~~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD 61 (89)
.+.+.+.+.++...|..+++++| .+++++..+
T Consensus 3 ~l~~~l~~~~~~~~~~~~v~v~d~~tg~~l~~~~ 36 (265)
T 1n9b_A 3 QPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWR 36 (265)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEETTTCCEEEEES
T ss_pred hHHHHHHHHHHhcCCcEEEEEEECCCCcEeeeeC
Confidence 46677888999999999999998 366654544
No 18
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=38.84 E-value=32 Score=15.98 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=11.9
Q ss_pred CEEEEEEcCCCCccEEEEEe
Q 043065 54 DKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 54 ~~l~~~rD~~G~rPL~~g~~ 73 (89)
-=+++.+|..-..+|++|.-
T Consensus 10 PFlf~I~~~~t~~iLF~G~v 29 (34)
T 2h4p_B 10 PFHFFIRHNKSKTILFFGRF 29 (34)
T ss_dssp CEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEEEEe
Confidence 34666666544456777764
No 19
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=38.18 E-value=31 Score=15.66 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=10.6
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+++.+|..-..+|++|.-
T Consensus 10 Flf~I~~~~t~~iLF~G~v 28 (31)
T 1hle_B 10 FIFFIRHNPSANILFLGRF 28 (31)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEe
Confidence 4566666543356666654
No 20
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=35.92 E-value=37 Score=15.90 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=10.7
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+++.+|..-..+|++|.-
T Consensus 11 Flf~I~~~~t~~iLF~G~v 29 (35)
T 2xn6_B 11 FMLLILERSTRSILFLGKV 29 (35)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEe
Confidence 3556666543356666654
No 21
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=34.89 E-value=40 Score=15.94 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=11.3
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+++.+|..-..+|++|.-
T Consensus 12 Flf~I~~~~t~~iLF~G~v 30 (36)
T 3ndd_B 12 FVFLMIEQNTKSPLFMGKV 30 (36)
T ss_dssp EEEEEEETTTCCEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEe
Confidence 4566666544456777664
No 22
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=34.63 E-value=43 Score=16.34 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=14.2
Q ss_pred eCCEEEEEEcCCCCccEEEEEe
Q 043065 52 TEDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 52 ~~~~l~~~rD~~G~rPL~~g~~ 73 (89)
|.-=+|+.+|.. ..+|++|.-
T Consensus 15 drPFlf~I~~~~-~~iLF~G~v 35 (41)
T 1m93_C 15 DHPFIYVIRHVD-GKILFVGRY 35 (41)
T ss_dssp CSCEEEEEEETT-SCEEEEEEE
T ss_pred eCCEEEEEEECC-CCEEEEEEe
Confidence 344577778765 468888875
No 23
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=34.20 E-value=77 Score=20.54 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=23.4
Q ss_pred hHHHHHHHHhhccCceEEEEEe--CCEEEEEEcC
Q 043065 31 FFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDP 62 (89)
Q Consensus 31 ~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD~ 62 (89)
+.+++.+.++...|..+++++| .+++++..++
T Consensus 4 l~~~l~~~~~~~~~~~~~~v~d~~tG~~l~~~~~ 37 (263)
T 1m40_A 4 TLVKVKDAEDQLGARVGYIELDLNSGKILESFRP 37 (263)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEETTTCCEEEEEST
T ss_pred HHHHHHHHHHhcCCeEEEEEEECCCCCEeeeeCC
Confidence 3456778888889999999998 3666655554
No 24
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=32.78 E-value=44 Score=15.78 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=10.5
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+++.+|..-..+|++|.-
T Consensus 12 Flf~I~~~~t~~iLF~G~v 30 (36)
T 4afx_B 12 FHFMIYEETSGMLLFLGRV 30 (36)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEe
Confidence 3555566544456666654
No 25
>1as4_B Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A {Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_B* 3caa_B 4caa_B
Probab=32.72 E-value=38 Score=16.10 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=13.3
Q ss_pred CCEEEEEEcCCCCccEEEEEe
Q 043065 53 EDKLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 53 ~~~l~~~rD~~G~rPL~~g~~ 73 (89)
.-=+++.||..-..+|++|.-
T Consensus 11 rPFlf~I~~~~t~~iLF~G~v 31 (37)
T 1as4_B 11 RPFLMIIVPTDTQNIFFMSKV 31 (37)
T ss_dssp SCEEEEEEETTSSCCSEEEEE
T ss_pred CCEEEEEEeCCCCcEEEEEEe
Confidence 345677777644467777765
No 26
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=30.87 E-value=51 Score=15.93 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=10.3
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+|+++|..-..+|++|.-
T Consensus 16 Flf~I~~~~t~~iLF~G~v 34 (40)
T 2riv_B 16 FMLLILERSTRSILFLGKV 34 (40)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEeCCCCcEEEEEEe
Confidence 4555665433356666654
No 27
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=27.45 E-value=51 Score=18.65 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.1
Q ss_pred CCEEEEEEcCCCCccEEEEE
Q 043065 53 EDKLVAVRDPYGFMPLVMGR 72 (89)
Q Consensus 53 ~~~l~~~rD~~G~rPL~~g~ 72 (89)
.+-+|++.|..|+|--+||.
T Consensus 55 ~~lIfvG~DSKgrkQYFYGk 74 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQYFYGK 74 (77)
T ss_dssp TSEEEEEECTTSCEEEEECT
T ss_pred CceEEEeecCCCceeeeecc
Confidence 36799999999999988884
No 28
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=26.31 E-value=74 Score=20.17 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHhhccCceEEEEEeCCE
Q 043065 34 RILDVCEKLEGAYSMVFVTEDK 55 (89)
Q Consensus 34 a~~~~~~~l~G~fa~~i~~~~~ 55 (89)
-+.+.+++.+|-+++++-|++.
T Consensus 27 ~L~~ll~rv~Gl~aI~ItDrDG 48 (143)
T 3cpt_A 27 FLYKKLPSVEGLHAIVVSDRDG 48 (143)
T ss_dssp HHHHHGGGSTTEEEEEEECTTS
T ss_pred HHHHHHhccCCeEEEEEECCCC
Confidence 3466789999999999988543
No 29
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 4dds_A* 4ddy_A* 4de0_A* 4de1_A* 4de2_A* 4de3_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* ...
Probab=26.27 E-value=1.3e+02 Score=19.26 Aligned_cols=30 Identities=7% Similarity=0.189 Sum_probs=22.4
Q ss_pred hHHHHHHHHhhccCceEEEEEe--CCEEEEEEc
Q 043065 31 FFLRILDVCEKLEGAYSMVFVT--EDKLVAVRD 61 (89)
Q Consensus 31 ~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD 61 (89)
+.+++.+.++...|..+++++| .++++ +.+
T Consensus 5 l~~~l~~~~~~~~~~~~~~v~d~~tG~~l-~~~ 36 (263)
T 2p74_A 5 VQQKLAALEKSSGGRLGVALIDTADNTQV-LYR 36 (263)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEETTTTEEE-EES
T ss_pred HHHHHHHHHHhcCCcEEEEEEECCCCCeE-eeC
Confidence 4456788888889999999998 46765 444
No 30
>3f02_C Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein, protease inhibitor, secreted, serine protease inhibitor, hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 1jjo_E
Probab=25.07 E-value=75 Score=16.02 Aligned_cols=19 Identities=26% Similarity=0.231 Sum_probs=11.0
Q ss_pred EEEEEEcCCCCccEEEEEe
Q 043065 55 KLVAVRDPYGFMPLVMGRR 73 (89)
Q Consensus 55 ~l~~~rD~~G~rPL~~g~~ 73 (89)
=+++.+|..-..+|++|+-
T Consensus 14 Flf~I~~~~t~~iLF~G~v 32 (48)
T 3f02_C 14 FFFLIRNRRTGTILFMGRV 32 (48)
T ss_dssp EEEEEEETTTCCEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEe
Confidence 4566666544456666655
No 31
>1mtp_B Serine proteinase inhibitor (serpin), chain B; structural genomics, protease inhibitor; 1.50A {Thermobifida fusca} SCOP: e.1.1.1
Probab=24.92 E-value=67 Score=15.85 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=14.6
Q ss_pred eCCEEEEEEcCCCCccEEEEEec
Q 043065 52 TEDKLVAVRDPYGFMPLVMGRRS 74 (89)
Q Consensus 52 ~~~~l~~~rD~~G~rPL~~g~~~ 74 (89)
|.-=+|+.+|. | .+|++|.-.
T Consensus 14 drPFlf~I~~~-~-~iLF~G~v~ 34 (43)
T 1mtp_B 14 DRPFHIVVRRR-G-AILFLGSIA 34 (43)
T ss_dssp CSCEEEEEEET-T-EEEEEEEES
T ss_pred eCCEEEEEEEC-C-EEEEEEEeC
Confidence 44567788886 3 688888763
No 32
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=21.91 E-value=1.7e+02 Score=18.98 Aligned_cols=30 Identities=3% Similarity=0.127 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhccCceEEEEEe--CCEEEEEEc
Q 043065 31 FFLRILDVCEKLEGAYSMVFVT--EDKLVAVRD 61 (89)
Q Consensus 31 ~~~a~~~~~~~l~G~fa~~i~~--~~~l~~~rD 61 (89)
+.+++.+..+...|..+++++| .++++ ..+
T Consensus 6 l~~~l~~~~~~~~~~~~v~v~d~~tg~~~-~~n 37 (271)
T 1hzo_A 6 IEEQLNTLEKYSQGRLGVALINTEDNSQI-TYR 37 (271)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEETTTTEEE-EES
T ss_pred HHHHHHHHHHhcCCcEEEEEEECCCCCEE-EEC
Confidence 4567788888899999999998 46665 444
No 33
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus} SCOP: e.3.1.1
Probab=21.85 E-value=1.2e+02 Score=19.47 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhccCceEEEEEe--CCEEE
Q 043065 31 FFLRILDVCEKLEGAYSMVFVT--EDKLV 57 (89)
Q Consensus 31 ~~~a~~~~~~~l~G~fa~~i~~--~~~l~ 57 (89)
+.+++.+.++...|..+++++| .++++
T Consensus 3 l~~~l~~~~~~~~~~~~v~v~d~~tg~~~ 31 (266)
T 1bsg_A 3 AERRLAGLERASGARLGVYAYDTGSGRTV 31 (266)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEETTTCCEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEECCCCCEE
Confidence 4567788899999999999998 35554
No 34
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 3rxw_A* 3rxx_A* 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=20.33 E-value=1.6e+02 Score=18.86 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhccCceEEEEEe--CCEEE
Q 043065 31 FFLRILDVCEKLEGAYSMVFVT--EDKLV 57 (89)
Q Consensus 31 ~~~a~~~~~~~l~G~fa~~i~~--~~~l~ 57 (89)
+.+++.+.++...|..+++++| .++++
T Consensus 4 l~~~l~~~~~~~~~~~~v~v~d~~tg~~~ 32 (264)
T 3c5a_A 4 VAEPFAKLEQDFGGSIGVYAMDTGSGATV 32 (264)
T ss_dssp TTHHHHHHHHHHTSEEEEEEEETTTCCEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEECCCCCEE
Confidence 4567788888889999999998 35554
No 35
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=20.05 E-value=85 Score=21.78 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCccccceeeccCChHHHHHHHHHhhcCCChHHHHHHHHhhccCceEEEEEeC-CEEEEEEcCCC
Q 043065 1 MLKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE-DKLVAVRDPYG 64 (89)
Q Consensus 1 ~~~n~qp~~~~~~~DsEvi~~ll~~~~~~~~~~a~~~~~~~l~G~fa~~i~~~-~~l~~~rD~~G 64 (89)
+|.||-|-......|-|..++.++... -..+.+.+....| +++..+ +.+++..|.++
T Consensus 8 ~i~~Y~~WT~t~g~~RE~~lQ~lQs~l----~~~l~~~~~~~~g---~~f~~R~D~~ia~tngi~ 65 (268)
T 2qv6_A 8 QIDNYGPWTVTPNPRRESDLQALQSRL----YADLNLMFGAHKG---LVFYTRFDNLIAITNGID 65 (268)
T ss_dssp EETTHHHHHHSSSCCCHHHHHHHHHHH----HHHHHHHHHTTTC---EEECTTSSEEEEECTTCC
T ss_pred EEcCcccccCCCCchhHHHHHHHHHHH----HHHHHHHHHhcCC---EEeecccceEEEEeCCCC
Confidence 467888888889999999999998764 1223344444443 455443 78888887654
Done!