RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 043065
(89 letters)
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 150 bits (381), Expect = 4e-45
Identities = 74/119 (62%), Positives = 80/119 (67%), Gaps = 32/119 (26%)
Query: 1 MLKNVQPFVAGY--------------------------------SSDTVVVLHLIPISKA 28
LKNVQPFVA Y SSDT V+LHLI ISKA
Sbjct: 81 SLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKA 140
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
RPFF RI+D CEKL+GAYSMVF+TEDKLVAVRDP+GF PLVMGRRSNGA+VFASETCAL
Sbjct: 141 RPFFSRIVDACEKLKGAYSMVFLTEDKLVAVRDPHGFRPLVMGRRSNGAVVFASETCAL 199
>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II
(GN-AT)_GPAT- type. This domain is found at the
N-terminus of glutamine phosphoribosylpyrophosphate
(Prpp) amidotransferase (GPATase) . The glutaminase
domain catalyzes amide nitrogen transfer from glutamine
to the appropriate substrate. In this process, glutamine
is hydrolyzed to glutamic acid and ammonia. GPATase
catalyzes the first step in purine biosynthesis, an
amide transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
GPATase crystalizes as a homotetramer, but can also
exist as a homdimer.
Length = 252
Score = 113 bits (285), Expect = 9e-33
Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 33/120 (27%)
Query: 1 MLKNVQPFVAGY--------------------------------SSDTVVVLHLIPISKA 28
L+N QPFV +SD+ V+LHLI S A
Sbjct: 80 SLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLA 139
Query: 29 RP-FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
+ F I+D E+++GAYS+V +T D L+AVRDP+G PLV+G+ V ASE+CAL
Sbjct: 140 KDDLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGIRPLVLGKLEGDGYVVASESCAL 199
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 97.7 bits (244), Expect = 1e-25
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
+SDT V+LHLI S+ F R +D ++EGAYS+V +T KL+ RDP G PLV+G
Sbjct: 146 TSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTNTKLIGARDPLGIRPLVLG- 204
Query: 73 RSNGALVFASETCAL 87
+G+ + ASETCAL
Sbjct: 205 ELDGSPILASETCAL 219
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 97.3 bits (243), Expect = 2e-25
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 13 SSDTVVVLHLIPISKARP-FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMG 71
+SD+ V+LHL+ F + +V +++GAY++V + +D L+AVRDP G PLV+G
Sbjct: 131 TSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKDGLIAVRDPNGIRPLVLG 190
Query: 72 RRSNGALVFASETCALF 88
+ +G V ASETCAL
Sbjct: 191 KLGDGFYVVASETCALD 207
>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional.
Length = 445
Score = 84.0 bits (208), Expect = 1e-20
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 15 DTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRS 74
DT ++HLI SK RI++ +K+ GAY +V ++ K+ A+RDP+G PL +GR
Sbjct: 127 DTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRPLSLGRLK 186
Query: 75 NGALVFASETCALFD 89
+G + ASETCA FD
Sbjct: 187 DGGYIVASETCA-FD 200
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 83.1 bits (206), Expect = 2e-20
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 12 YSSDTVVVLHLIPISKARP--FFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLV 69
+SD+ V+LHL+ + F I V +++ GAY++V + D L+AVRDP+G PLV
Sbjct: 123 TTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMIGDGLIAVRDPHGIRPLV 182
Query: 70 MGRRSNGALVFASETCAL 87
+G+R +G V ASE+CAL
Sbjct: 183 LGKRGDG-YVVASESCAL 199
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 77.8 bits (192), Expect = 2e-18
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT +++HLI S F ++ + ++G ++ + +TEDKL+A DP GF PL +G+
Sbjct: 136 SSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTEDKLIAALDPNGFRPLSIGK 195
Query: 73 RSNGALVFASETCAL 87
NGA V ASETCA
Sbjct: 196 MKNGAYVVASETCAF 210
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 74.8 bits (184), Expect = 4e-18
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 13 SSDTVVVLHLIP-ISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLV 69
SD+ V+LHL+ + + F + D ++L+G ++ D+L A RD +G PL
Sbjct: 126 ESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLY 185
Query: 70 MGRRSNGALVFASETCAL 87
G +G LVFASE AL
Sbjct: 186 YGITKDGGLVFASEPKAL 203
>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.
Length = 469
Score = 69.3 bits (170), Expect = 2e-15
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
S D+ V+L+LI S + ++D + ++G+Y++V +TEDKL+ VRDP+G PL +G+
Sbjct: 140 SIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTEDKLIGVRDPHGIRPLCLGK 199
Query: 73 RSNGALVFASETCAL 87
+ +SE+CAL
Sbjct: 200 L-GDDYILSSESCAL 213
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 63.7 bits (155), Expect = 2e-13
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
+SDT V+ HLI S A +I + L+GAY+ + +TE +L DP G PL +GR
Sbjct: 135 TSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTETELYVALDPNGLRPLSIGR 194
Query: 73 RSNGALVFASETCALFD 89
+ A V ASETCA FD
Sbjct: 195 LGD-AYVVASETCA-FD 209
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 63.5 bits (155), Expect = 2e-13
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 36 LDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
L++ + GA+ +VF+ E L A RDP G PLV+GR G +V ASET AL
Sbjct: 178 LELLPTVRGAFCLVFMDEHTLYAARDPQGVRPLVLGRLERGWVV-ASETAAL 228
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 60.4 bits (146), Expect = 2e-12
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V+LHLI S + + K++GA++ + +T ++++ DP GF PL +G+
Sbjct: 135 SSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTGNEMIVALDPNGFRPLSIGK 194
Query: 73 RSNGALVFASETCAL 87
+ A V ASETCA
Sbjct: 195 MGD-AYVVASETCAF 208
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 58.4 bits (141), Expect = 1e-11
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 40 EKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
E+L GAY+ + D+L A+RDP G PLV+G+ +G ++ ASE+CA+
Sbjct: 170 ERLRGAYACALMINDRLYAIRDPNGIRPLVLGKNFDGYII-ASESCAI 216
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 57.4 bits (139), Expect = 2e-11
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 35 ILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGAL---VFASETCAL 87
+ ++ +GA+S+V T + L+ VRDP G PLV+G G V ASETCAL
Sbjct: 182 AISAFQRCQGAFSLVIGTPEGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCAL 237
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 52.5 bits (127), Expect = 2e-10
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVT--EDKLVAVRDPYGFMPLVMG 71
SDT V+LHL D ++L G ++ E +L RD +G PL G
Sbjct: 52 SDTEVILHLY----EE----WGEDCLDRLNGMFAFAIWDRREGRLFLARDRFGIKPLYYG 103
Query: 72 RRSNGALVFASETCALFD 89
+ G L+FASE AL
Sbjct: 104 -KDGGGLLFASELKALLA 120
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 53.1 bits (128), Expect = 4e-10
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 29 RPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASET 84
R F+ + + E +G ++VF + A D G P G +G +V ASE
Sbjct: 168 RAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVVASEA 223
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 48.9 bits (117), Expect = 2e-08
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDK----LVAVRDPYGFMPLV 69
SD ++ HL + F L+G ++ V D A RD G +PL
Sbjct: 104 SDCEIIGHLYKEYGPKDF-------WNHLDGMFA--TVIYDMKTNTFFAARDHIGIIPLY 154
Query: 70 MGRRSNGALVFASETCALFD 89
+G +G++ F+SE AL D
Sbjct: 155 IGYAKDGSIWFSSELKALHD 174
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 46.4 bits (111), Expect = 2e-07
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDK--LVAVRDPYGFMPLVMG 71
SD V+L L + + D + L+G ++ +K + RDP G +PL G
Sbjct: 98 SDCEVILAL--------YQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYG 149
Query: 72 RRSNGALVFASETCAL 87
+G L FASE AL
Sbjct: 150 YDEHGNLYFASEMKAL 165
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia.
Length = 220
Score = 45.6 bits (109), Expect = 3e-07
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 14 SDTVVVLHLIPISKARPFFLRI-LDVCEKLEGAYSMVFV----TEDKLVAVRDPYGFMPL 68
SDT V+LHL + D E+L G ++ F + +L RD +G PL
Sbjct: 97 SDTEVILHL---------YEEWGEDCLERLNGMFA--FALWDKRKRRLFLARDRFGIKPL 145
Query: 69 VMGRRSNGALVFASETCALFD 89
GR G L FASE AL
Sbjct: 146 YYGRD-GGGLAFASELKALLA 165
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 44.8 bits (107), Expect = 6e-07
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 38 VCEKLEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRRSNGA---LVFASETCAL 87
V ++ GAY++V + LVA RDP+G PLV+G+R + ASE+ AL
Sbjct: 159 VHRRVRGAYAVVAMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVAL 212
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 43.5 bits (103), Expect = 2e-06
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 13 SSDTVVVLHLIPISKARPFFLRIL-DVCEKLEG--AYSMVFVTEDKLVAVRDPYGFMPLV 69
SDT V+L L + D E L G A+++ T KL RDP+G PL
Sbjct: 97 YSDTEVILTL---------YEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLY 147
Query: 70 MGRRSNGALVFASETCALFD 89
+ N L FASE AL
Sbjct: 148 YTSK-NENLAFASEIKALLA 166
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 43.7 bits (103), Expect = 2e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 38 VCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
V +++GAYS+ + + K++ RDP GF PL G FASE AL
Sbjct: 151 VFNEVKGAYSVAILFDGKIIVARDPVGFRPLSYG--EGDGHYFASEDSAL 198
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 41.6 bits (98), Expect = 1e-05
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE--DKLVAVRDPYGFMPLVMG 71
SDT V+LHL + ++L+G ++ +L RD +G PL
Sbjct: 97 SDTEVILHLY--EEWGEEC------VDRLDGMFAFALWDSEKGELFLARDRFGIKPLYYA 148
Query: 72 RRSNGALVFASETCALFD 89
G L FASE AL
Sbjct: 149 -YDGGQLYFASEIKALLA 165
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits.
Length = 249
Score = 39.6 bits (93), Expect = 4e-05
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 42 LEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
L+G ++++ T D + +RD P V+ + + ASE CA+
Sbjct: 183 LDGPFTIIVGTPDGFIVIRDRIKLRPAVVAET-DDYVAIASEECAI 227
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 39.1 bits (92), Expect = 7e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 15 DTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVRDPYGFMPLVMG 71
DT V+ HL+ + V ++LEG+Y+++ D+LVA R PLV+G
Sbjct: 124 DTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARK---GSPLVIG 180
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 38.6 bits (90), Expect = 9e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFV-TEDK-LVAVRDPYGFMPLVMG 71
SD V+ HL + F+ +LD G +S V + T D +A RD G PL +G
Sbjct: 97 SDCEVIAHLY--EEHGEEFVDMLD------GMFSFVLLDTRDNSFIAARDHIGITPLYIG 148
Query: 72 RRSNGALVFASETCALFD 89
+G++ FASE AL D
Sbjct: 149 WGLDGSVWFASEMKALCD 166
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes, such as asparagine
synthetase and glutamine--fructose-6-phosphate
transaminase.
Length = 130
Score = 36.1 bits (84), Expect = 5e-04
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVF--VTEDKLVAVRDPYGFMPLVMG 71
SD+ V+L L D E+L G ++ L RD G PL G
Sbjct: 68 SDSEVLLALYEEWGE--------DALERLRGMFAFAIWDKRRKTLFLARDRLGIKPLYYG 119
Query: 72 RRSNGALVFASE 83
+ G L+FASE
Sbjct: 120 -VTGGGLLFASE 130
>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the
N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
humans). The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the appropriate
substrate. In this process, glutamine is hydrolyzed to
glutamic acid and ammonia. In humans, GFAT catalyzes the
first and rate-limiting step of hexosamine metabolism,
the conversion of D-fructose-6P (Fru6P) into
D-glucosamine-6P using L-glutamine as a nitrogen source.
The end product of this pathway, UDP-N-acetyl
glucosamine, is a major building block of the bacterial
peptidoglycan and fungal chitin.
Length = 215
Score = 36.7 bits (86), Expect = 5e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 15 DTVVVLHLIP--ISKARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVRDPYGFMPLV 69
DT V+ HLI + ++LEGAY++ +++ D++VA R+ G PLV
Sbjct: 124 DTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARN--G-SPLV 180
Query: 70 MGRRSNGALVFASETCALFD 89
+G AS+ AL +
Sbjct: 181 IGIGDGE-NFVASDAPALLE 199
>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 32.7 bits (76), Expect = 0.013
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 15 DTVVVLHLIPISKARPFFLRILD----VCEKLEGAYSMVFVTE---DKLVAVR-DPYGFM 66
DT V+ HLI + +L+ ++LEGAY++ + + D +VA R
Sbjct: 125 DTEVIAHLI--EEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTIVAARNGS---- 178
Query: 67 PLVMGRRSNGALVFASETCAL 87
PLV+G G AS+ AL
Sbjct: 179 PLVIG-LGEGENFLASDALAL 198
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Central intermediary metabolism, Amino sugars].
Length = 607
Score = 31.8 bits (73), Expect = 0.029
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 15 DTVVVLHLIP--ISKARPFFLRILDVCEKLEGAYSMVFVTED---KLVAVRDPYGFMPLV 69
DT V+ HLI + + + ++L GAY++ + D LVA R G PL+
Sbjct: 124 DTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVAAR--SG-SPLI 180
Query: 70 MGRRSNGALVFASETCALFD 89
+G +G AS+ AL
Sbjct: 181 VG-LGDGENFVASDVTALLP 199
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.3 bits (66), Expect = 0.22
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 44 GAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASE 83
G++S + V DK DP P+++G RS+G V E
Sbjct: 1002 GSFSGLRVDSDK-----DP----PVLVGVRSDGERVRVHE 1032
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 28.2 bits (63), Expect = 0.47
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 56 LVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
L RD G PL ++G +F SE AL
Sbjct: 135 LFLARDRLGIKPLYYALLADGWFIFGSELKAL 166
>gnl|CDD|183742 PRK12784, PRK12784, hypothetical protein; Provisional.
Length = 84
Score = 26.8 bits (59), Expect = 0.69
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 34 RILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGAL 78
R+ ++C EG +FV E V Y + L+M R++NG L
Sbjct: 4 RMEEICSSYEGKVEEIFVNESSYV-----YEWEKLMMIRKNNGEL 43
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but its
function has not yet been determined. The glutaminase
domain catalyzes an amide nitrogen transfer from
glutamine to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
This domain is related to members of the Ntn (N-terminal
nucleophile) hydrolase superfamily and is found at the
N-terminus of enzymes such as glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS). GLMS
catalyzes the formation of glucosamine 6-phosphate from
fructose 6-phosphate and glutamine in amino sugar
synthesis. GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. Asparagine synthetase B synthesizes
asparagine from aspartate and glutamine. Beta-LS
catalyzes the formation of the beta-lactam ring in the
beta-lactamase inhibitor clavulanic acid. GltS
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine. These enzymes are generally dimers, but
GPATase also exists as a homotetramer.
Length = 181
Score = 27.6 bits (62), Expect = 0.74
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVF--VTEDKLVAVRDPYGFMPLVMG 71
+DT V+ L+ + ILDV +EG ++ ++ +E+KL RD G L+
Sbjct: 93 NDTEVIFELL--ANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYK 150
Query: 72 RRSNG 76
NG
Sbjct: 151 LDPNG 155
>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in
Rabphilin and Double C2 domain. Rabphilin is found
neurons and in neuroendrocrine cells, while Doc2 is
found not only in the brain but in tissues, including
mast cells, chromaffin cells, and osteoblasts.
Rabphilin and Doc2s share highly homologous tandem C2
domains, although their N-terminal structures are
completely different: rabphilin contains an N-terminal
Rab-binding domain (RBD),7 whereas Doc2 contains an
N-terminal Munc13-1-interacting domain (MID). C2
domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a
single C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin
which only have a single C2 domain. C2 domains with a
calcium binding region have negatively charged
residues, primarily aspartates, that serve as ligands
for calcium ions. This cd contains the first C2 repeat,
C2A, and has a type-I topology.
Length = 123
Score = 26.5 bits (59), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 3 KNVQPFVAGYSSDTVVVLHLIPISK 27
K ++ A SD V L+L+P +
Sbjct: 25 KGLKAMDANGLSDPYVKLNLLPGAS 49
>gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional.
Length = 730
Score = 26.8 bits (59), Expect = 1.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 43 EGAYSMVFVTEDKLVAVRDPYGFMPLV 69
+G Y + V D + + DPY F P +
Sbjct: 81 DGPYRLRIVWPDVVQEIEDPYAFAPTL 107
>gnl|CDD|150043 pfam09230, DFF40, DNA fragmentation factor 40 kDa. Members of this
family of eukaryotic apoptotic proteins induce DNA
fragmentation and chromatin condensation during
apoptosis.
Length = 227
Score = 26.2 bits (58), Expect = 2.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 1 MLKNVQPFVAGYSSDTVVVLHLIPISKARPFFLRILD-VCEKLEGA--YSMVFV-TEDKL 56
M + Q + GY + L + +KAR +LR+L+ +KL+G + F +
Sbjct: 59 MKYSCQSRIRGYFYEVKEYLTKVANAKAREEYLRVLESFRQKLKGVDYFGSYFDRSAQAS 118
Query: 57 VAVRDPYG 64
V + P G
Sbjct: 119 VRLCTPEG 126
>gnl|CDD|234179 TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108
family. Work by Mougous, et al. (2006), describes
IAHP-related loci as a type VI secretion system
(PMID:16763151). This protein family is associated with
type VI secretion loci, although not treated explicitly
by Mougous, et al [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 473
Score = 25.7 bits (57), Expect = 3.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 64 GFMPLVMGRRSNGALVFASETC 85
GF+PLV + S+ A F++++
Sbjct: 330 GFIPLVHRKNSDYAAFFSAQSV 351
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional.
Length = 204
Score = 24.8 bits (55), Expect = 6.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 25 ISKARPFFLRILDVC---EKLEGAYSMV--FVTEDKLVAVRDPYGFMPLVM 70
I + RP L +LDV E++ A + + E LV YG P+
Sbjct: 35 IYRVRPDGLYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQK 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.421
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,537,815
Number of extensions: 370984
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 42
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.0 bits)