RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043065
(89 letters)
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 111 bits (281), Expect = 4e-31
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 13 SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
SSDT V+ HLI S +I + L+GAY+ + +TE +++ DP G PL +G
Sbjct: 125 SSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGM 184
Query: 73 RSNGALVFASETCAL 87
+ V ASETCA
Sbjct: 185 MGDA-YVVASETCAF 198
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 90.3 bits (225), Expect = 3e-23
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 46/132 (34%)
Query: 2 LKNVQPFVAGY--------------------------------SSDTVVVLHLI-----P 24
QPF +SD+ ++L++
Sbjct: 82 ASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDN 141
Query: 25 ISKARP----FFLRILDVCEKLEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR----SN 75
F I + GAY+ V + +VA RDP G PLV+G+R +
Sbjct: 142 FRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENR 201
Query: 76 GALVFASETCAL 87
+ ASE+ AL
Sbjct: 202 TEYMVASESVAL 213
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 49.9 bits (119), Expect = 6e-09
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 14 SDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFV--TEDKLVAVRDPYGFMPLVMG 71
SD V+L L + + + + L+G ++ +D + RD G +PL MG
Sbjct: 97 SDCEVILAL--------YQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMG 148
Query: 72 RRSNGALVFASETCALFD 89
+G L ASE AL
Sbjct: 149 YDEHGQLYVASEMKALVP 166
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 47.8 bits (114), Expect = 4e-08
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 14 SDTVVVLHLIPISKARPFFLRI-LDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGR 72
D +VL L R L + G ++ V T D+++ D G +PL
Sbjct: 97 GDAELVLRL---------LERYDLHAFRLVNGRFATVVRTGDRVLLATDHAGSVPLYTC- 146
Query: 73 RSNGALVFASETCALFD 89
+ G + ++E AL
Sbjct: 147 VAPGEVRASTEAKALAA 163
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 41.6 bits (98), Expect = 6e-06
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 14 SDTVVVLHLIPISKARPFFLRI-LDVCEKLEGAYSMVFVTEDK-LVAVRDPYGFMPLVMG 71
+D ++ L F R+ + EG + + L + + GF P+ +
Sbjct: 80 NDAELLALL---------FTRLGANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVV 130
Query: 72 RRSNGALVFASETCALF 88
+ A + S
Sbjct: 131 -QGKKAWMTNSLKLVTA 146
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A {Escherichia
coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 36.7 bits (86), Expect = 3e-04
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 15 DTVVVLHLIP--ISKARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVRDPYGFMPLV 69
DT V+ HL+ + + +L +L GAY V + D L+A R G PLV
Sbjct: 123 DTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARS--G-SPLV 179
Query: 70 MG 71
+G
Sbjct: 180 IG 181
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 36.3 bits (85), Expect = 5e-04
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 15 DTVVVLHLIP--ISKARPFFLRILDVCEKLEGAYSMVFVTE---DKLVAVR-DPYGFMPL 68
DT V+ HL+ + + +L +L GAY V + D L+A R PL
Sbjct: 123 DTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS----PL 178
Query: 69 VMG 71
V+G
Sbjct: 179 VIG 181
>3mdn_A Glutamine aminotransferase class-II domain protei; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 28.6 bits (63), Expect = 0.19
Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 15/90 (16%)
Query: 13 SSDTVVVLHLI--------PISKARPFFLRILDVCEKLEGA----YSMVFVTEDKLVAVR 60
S+D+ V+ L P R+ + S F L A R
Sbjct: 142 STDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLYAAR 201
Query: 61 DPYGFMPLVMGRR---SNGALVFASETCAL 87
+ + R + SE
Sbjct: 202 YSSDHIAPSVYYRYSHARQGWAVVSEPLET 231
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 26.0 bits (57), Expect = 1.8
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 25 ISKARPFFLRILDVC--EKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRS--NGAL 78
++ + + + + + + + D L D M R+ N L
Sbjct: 650 LADTKEYIYKQIGDKLNDVYYKMFKSLEAKADDLTYFNDESHVDFDQMNMRTLRNTLL 707
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A
{Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A*
3iq7_A* 2wb8_A
Length = 336
Score = 24.5 bits (52), Expect = 7.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 36 LDVCEKL-EGAYSMVFVTEDK--LVAV 59
L CEK+ EG + VF T VA+
Sbjct: 22 LQRCEKIGEGVFGEVFQTIADHTPVAI 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.421
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,333,043
Number of extensions: 67911
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 10
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)