RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043065
         (89 letters)



>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
           N-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 234

 Score = 45.4 bits (106), Expect = 8e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 15  DTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRS 74
           DT V+ HLI  S       +I +    L+GAY+ + +TE +++   DP G  PL +G   
Sbjct: 127 DTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMMG 186

Query: 75  NGALVFASETCAL 87
           +   V ASETCA 
Sbjct: 187 DA-YVVASETCAF 198


>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 249

 Score = 42.5 bits (99), Expect = 8e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 28  ARPFFLRILDVCEKLEGAYSMV-FVTEDKLVAVRDPYGFMPLVMGRR----SNGALVFAS 82
           A   F  I      + GAY+ V  +    +VA RDP G  PLV+G+R    +    + AS
Sbjct: 149 ADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVAS 208

Query: 83  ETCAL 87
           E+ AL
Sbjct: 209 ESVAL 213


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 40.4 bits (94), Expect = 5e-06
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 27  KARPFFLRILDVCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCA 86
           +   F      + E  +G   +VF     + A  D  G  P       +  +V  SE   
Sbjct: 311 EISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGV 370

Query: 87  L 87
           +
Sbjct: 371 V 371


>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 40.0 bits (93), Expect = 8e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 38  VCEKLEGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFASETCAL 87
           V E  +G  ++       +V   D  G  P+     ++G ++  SET  +
Sbjct: 323 VMEPWDGPAALAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMV 372


>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 204

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 13  SSDTVVVLHLIPISKARPFFLRILDVCEKLEGAYSMVFVTEDK-LVAVRDPYGFMPLVMG 71
           ++D  ++  L        F     +     EG +       +  L  + +  GF P+ + 
Sbjct: 78  ANDAELLALL--------FTRLGANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVV 129

Query: 72  RRSNGALVFASETCALF 88
            +   A +  S      
Sbjct: 130 -QGKKAWMTNSLKLVTA 145


>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 192

 Score = 28.8 bits (63), Expect = 0.061
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 58  AVRDPYGFMPLVMGRRSNGALVFASETCALFD 89
             RD  G +PL MG   +G L  ASE  AL  
Sbjct: 135 IGRDHLGIIPLYMGYDEHGQLYVASEMKALVP 166


>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain
           {Thermus aquaticus [TaxId: 271]}
          Length = 170

 Score = 22.5 bits (48), Expect = 8.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 43  EGAYSMVFVTEDKLVAVRDPYGFMPLVMGRRSNGALVFA 81
           E  +S +++ +++   +RD Y    LV+       +V A
Sbjct: 63  EKNHSGLWMPKERAKELRDFYATPHLVVAHTKGTRVVAA 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,888
Number of extensions: 11774
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)