BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043067
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ TK YG + NG
Sbjct: 17 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQ 76
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 77 YIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATC 110
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 18 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 77
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 78 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 111
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 18 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 77
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 78 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 111
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 17 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 76
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 77 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 110
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 17 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 76
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 77 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 110
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 20 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 79
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 80 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 113
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V L Q ++ T+ YG + NG
Sbjct: 17 KYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 76
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 77 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 110
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 17 KYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 76
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 77 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 110
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 41 QELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH---TNNIGIG 97
S G L Q ++ K V+L Q ++ T+ YG + NG +N GI
Sbjct: 26 WAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGID 85
Query: 98 EDSHIPVRLQLSQPQHETPARATKL 122
D+ P + + Q+++ RA
Sbjct: 86 SDASYPYKAMDQKCQYDSKYRAATC 110
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 41 QELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH---TNNIGIG 97
S G L Q ++ K V+L Q ++ T+ YG + NG +N GI
Sbjct: 27 WAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGID 86
Query: 98 EDSHIPVRLQLSQPQHETPARATKL 122
D+ P + + Q+++ RA
Sbjct: 87 SDASYPYKAMDQKCQYDSKYRAATC 111
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 29 RMKKDQIL-MDEIQELSRKGNLIH-QENVELYKKVNLIRQENMELYTKVYGTRDLNGSNR 86
R+ DQ L + I R + IH Q+ V+ KK N R+ + T + TR+L+ R
Sbjct: 276 RITADQALKVPWICNRERVASAIHRQDTVDCLKKFNARRKLKGAILTTMIATRNLSNLGR 335
Query: 87 NPL 89
N L
Sbjct: 336 NLL 338
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 43 LSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH---TNNIGIGED 99
S G L Q ++ K V+L Q ++ T+ YG + NG +N GI D
Sbjct: 30 FSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSD 89
Query: 100 SHIPVRLQLSQPQHETPARATKL 122
+ P + + Q+++ RA
Sbjct: 90 ASYPYKAMDQKCQYDSKYRAATC 112
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH- 90
K Q S G L Q ++ K V+L Q ++ T+ YG + NG
Sbjct: 115 KYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQ 174
Query: 91 --TNNIGIGEDSHIPVRLQLSQPQHETPARATKL 122
+N GI D+ P + + Q+++ RA
Sbjct: 175 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 208
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 48 NLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH 90
N I + N +LYKK++L+ + + ELY+ ++ ++ R L
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 48 NLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH 90
N I + N +LYKK++L+ + + ELY+ ++ ++ R L
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 48 NLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH 90
N I + N +LYKK++L+ + + ELY+ ++ ++ R L
Sbjct: 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 39 EIQELS-RKGNLIHQENVELY-KKVNLIRQENMELYTKVYGTRDLNGSNR---NPLHTNN 93
E+ EL+ +KG ++H+E+VEL ++ +R+E V G L GS R +PL
Sbjct: 108 ELWELAAQKGRVLHEEHVELLMEEFEFLRRE-------VLGKELLKGSLRFTASPLEEER 160
Query: 94 IGIGEDSHI 102
G S I
Sbjct: 161 FGFPAFSGI 169
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 41 QELSRKGNLIHQENVELYKKVNLIRQENMELYTKVYGTRDLNGSNRNPLH---TNNIGIG 97
S G L Q ++ K V+L Q ++ T+ YG + NG +N GI
Sbjct: 26 WAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGID 85
Query: 98 EDSHIPVRLQLSQPQHETPARATKL 122
D+ P + + Q+++ RA
Sbjct: 86 SDASYPYKAMDLKCQYDSKYRAATC 110
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 39 EIQELS-RKGNLIHQENVELY-KKVNLIRQENMELYTKVYGTRDLNGSNR---NPLHTNN 93
E+ EL+ +KG ++H+E+VEL ++ +R+E V G L GS R +PL
Sbjct: 107 ELWELAAQKGRVLHEEHVELLMEEFEFLRRE-------VLGKELLKGSLRFTASPLEEER 159
Query: 94 IGIGEDSHI 102
G S I
Sbjct: 160 FGFPAFSGI 168
>pdb|2PKE|A Chain A, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
pdb|2PKE|B Chain B, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
Length = 251
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 16 NLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQEN-------VELYKKVNLIRQEN 68
L++ +E+ + GVR I D L KG+L HQE +L+ ++ ++ +++
Sbjct: 106 TLQHPVEV-IAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKD 164
Query: 69 MELYTKVYGTRDL 81
+ Y +V DL
Sbjct: 165 PQTYARVLSEFDL 177
>pdb|2AGK|A Chain A, Structure Of S. Cerevisiae His6 Protein
Length = 260
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 60 KVNLIRQENMELYTKVYGTRDLNGSNRNPLHTNN 93
K N + Q Y K+Y RD+ G + L NN
Sbjct: 31 KTNFVSQHPSSYYAKLYKDRDVQGCHVIKLGPNN 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,369,401
Number of Sequences: 62578
Number of extensions: 128849
Number of successful extensions: 255
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 40
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)