Query 043067
Match_columns 122
No_of_seqs 139 out of 1246
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.7 1.4E-17 2.9E-22 113.0 7.9 62 1-62 38-99 (100)
2 PF06005 DUF904: Protein of un 95.6 0.24 5.3E-06 31.7 8.8 52 9-65 1-52 (72)
3 COG3074 Uncharacterized protei 93.2 1.5 3.2E-05 28.3 9.0 52 9-65 1-52 (79)
4 smart00338 BRLZ basic region l 89.9 3.1 6.7E-05 25.4 7.1 40 23-66 15-54 (65)
5 PRK15422 septal ring assembly 89.4 4.4 9.5E-05 26.5 9.0 43 9-56 1-43 (79)
6 PRK13169 DNA replication intia 89.1 4.3 9.4E-05 28.0 7.8 48 11-63 7-54 (110)
7 cd07429 Cby_like Chibby, a nuc 88.9 0.92 2E-05 31.4 4.3 26 39-64 73-98 (108)
8 PF06156 DUF972: Protein of un 88.3 5.9 0.00013 27.2 8.0 47 11-62 7-53 (107)
9 PF07716 bZIP_2: Basic region 85.8 5.4 0.00012 23.6 6.8 40 22-65 13-52 (54)
10 PF01166 TSC22: TSC-22/dip/bun 85.5 2.5 5.3E-05 26.2 4.4 26 34-59 17-42 (59)
11 PF00170 bZIP_1: bZIP transcri 84.8 6.7 0.00015 23.8 7.8 40 23-66 15-54 (64)
12 KOG0014 MADS box transcription 84.6 0.094 2E-06 38.4 -2.6 40 2-41 137-177 (195)
13 PF06698 DUF1192: Protein of u 84.5 3.4 7.3E-05 25.6 4.7 29 2-30 14-42 (59)
14 KOG4797 Transcriptional regula 81.4 9.4 0.0002 26.6 6.4 44 17-60 46-89 (123)
15 PF10504 DUF2452: Protein of u 79.1 17 0.00037 26.8 7.5 43 10-52 28-73 (159)
16 PF06156 DUF972: Protein of un 77.2 12 0.00026 25.6 6.0 34 32-65 16-49 (107)
17 PF05529 Bap31: B-cell recepto 76.9 27 0.00058 25.7 8.3 54 11-64 124-187 (192)
18 PF14645 Chibby: Chibby family 70.6 9.7 0.00021 26.4 4.3 27 38-64 71-97 (116)
19 smart00340 HALZ homeobox assoc 69.5 14 0.0003 21.4 4.0 25 41-65 8-32 (44)
20 KOG4797 Transcriptional regula 65.8 14 0.0003 25.8 4.1 44 16-60 49-96 (123)
21 KOG3119 Basic region leucine z 65.4 31 0.00067 27.2 6.7 42 22-67 203-244 (269)
22 PRK13169 DNA replication intia 64.3 34 0.00073 23.6 5.9 34 32-65 16-49 (110)
23 PRK00888 ftsB cell division pr 63.9 30 0.00066 23.4 5.6 34 32-65 28-61 (105)
24 PRK10884 SH3 domain-containing 61.1 71 0.0015 24.3 8.8 23 41-63 128-150 (206)
25 PF03980 Nnf1: Nnf1 ; InterPr 60.7 43 0.00092 22.3 5.9 38 28-65 70-107 (109)
26 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.3 62 0.0014 22.4 8.2 29 34-62 101-129 (132)
27 KOG0709 CREB/ATF family transc 57.1 19 0.00041 30.9 4.3 24 8-31 233-256 (472)
28 TIGR02338 gimC_beta prefoldin, 56.5 58 0.0013 21.8 6.4 45 17-62 61-105 (110)
29 PF06005 DUF904: Protein of un 56.0 50 0.0011 21.0 7.3 41 30-70 10-50 (72)
30 KOG4005 Transcription factor X 54.8 68 0.0015 25.5 6.7 52 5-61 60-113 (292)
31 PF04849 HAP1_N: HAP1 N-termin 53.8 23 0.0005 28.7 4.1 54 12-65 97-187 (306)
32 PF02151 UVR: UvrB/uvrC motif; 53.5 35 0.00076 18.4 4.4 33 13-45 3-35 (36)
33 COG4467 Regulator of replicati 52.2 78 0.0017 22.0 7.1 42 11-64 7-48 (114)
34 COG1382 GimC Prefoldin, chaper 51.8 81 0.0018 22.1 6.8 41 22-63 69-109 (119)
35 PRK09343 prefoldin subunit bet 51.8 77 0.0017 21.8 6.8 43 20-63 68-110 (121)
36 PF01093 Clusterin: Clusterin; 51.0 81 0.0017 26.9 7.1 60 4-63 1-69 (436)
37 PF15243 ANAPC15: Anaphase-pro 50.5 22 0.00048 23.8 3.0 23 12-34 28-50 (92)
38 PF04977 DivIC: Septum formati 50.5 57 0.0012 19.9 5.5 30 35-64 21-50 (80)
39 TIGR02894 DNA_bind_RsfA transc 49.7 1E+02 0.0023 22.7 8.6 59 7-65 78-138 (161)
40 KOG0930 Guanine nucleotide exc 49.2 40 0.00086 27.6 4.8 42 7-57 9-50 (395)
41 PF12537 DUF3735: Protein of u 48.4 38 0.00081 21.3 3.7 25 11-35 47-71 (72)
42 TIGR02209 ftsL_broad cell divi 48.0 67 0.0015 20.1 5.4 33 33-65 26-58 (85)
43 smart00787 Spc7 Spc7 kinetocho 47.3 1.5E+02 0.0033 23.9 8.4 60 5-64 197-258 (312)
44 PHA01750 hypothetical protein 47.2 73 0.0016 20.3 7.1 45 17-61 28-72 (75)
45 PRK13729 conjugal transfer pil 46.9 83 0.0018 27.1 6.6 42 21-63 81-122 (475)
46 KOG3584 cAMP response element 45.8 58 0.0013 26.6 5.2 44 17-65 296-339 (348)
47 PF09798 LCD1: DNA damage chec 45.5 1.7E+02 0.0036 26.4 8.4 53 12-64 4-59 (654)
48 PF11365 DUF3166: Protein of u 45.3 83 0.0018 21.2 5.2 31 34-64 11-41 (96)
49 TIGR02449 conserved hypothetic 44.8 77 0.0017 19.8 8.0 47 13-64 1-47 (65)
50 PF10224 DUF2205: Predicted co 44.1 87 0.0019 20.4 5.0 29 36-64 35-63 (80)
51 PF04880 NUDE_C: NUDE protein, 43.0 67 0.0015 23.7 4.9 43 14-61 2-47 (166)
52 PF04999 FtsL: Cell division p 42.3 94 0.002 20.1 5.3 33 33-65 37-69 (97)
53 COG2433 Uncharacterized conser 41.1 2.4E+02 0.0053 25.3 8.6 54 12-65 450-508 (652)
54 PLN02372 violaxanthin de-epoxi 40.8 1.7E+02 0.0037 25.0 7.4 41 11-53 378-418 (455)
55 PF10226 DUF2216: Uncharacteri 40.7 84 0.0018 23.9 5.1 31 31-61 48-78 (195)
56 PF10018 Med4: Vitamin-D-recep 40.5 1.5E+02 0.0032 21.8 8.7 52 11-64 4-55 (188)
57 PF11629 Mst1_SARAH: C termina 40.5 49 0.0011 19.7 3.1 11 6-16 5-15 (49)
58 COG4467 Regulator of replicati 40.3 91 0.002 21.7 4.8 17 47-63 38-54 (114)
59 COG4026 Uncharacterized protei 40.0 1.9E+02 0.0041 22.9 9.0 59 2-63 96-160 (290)
60 PF08687 ASD2: Apx/Shroom doma 38.7 1.1E+02 0.0025 24.2 5.9 44 18-65 77-120 (264)
61 smart00338 BRLZ basic region l 38.6 88 0.0019 18.8 5.1 27 34-60 36-62 (65)
62 PF10234 Cluap1: Clusterin-ass 38.3 2E+02 0.0043 22.9 7.2 21 12-32 158-178 (267)
63 smart00030 CLb CLUSTERIN Beta 38.2 1.8E+02 0.004 22.3 8.2 60 4-63 7-75 (206)
64 PF08317 Spc7: Spc7 kinetochor 38.1 2.1E+02 0.0045 22.9 8.8 60 5-64 202-263 (325)
65 PF13270 DUF4061: Domain of un 37.6 1.2E+02 0.0026 20.1 5.3 52 12-64 2-55 (90)
66 PF04728 LPP: Lipoprotein leuc 37.6 97 0.0021 18.9 6.0 35 31-65 3-37 (56)
67 KOG2417 Predicted G-protein co 37.4 2.6E+02 0.0055 23.7 8.7 32 10-41 184-215 (462)
68 cd00890 Prefoldin Prefoldin is 35.6 1.3E+02 0.0029 20.0 5.9 43 18-61 82-124 (129)
69 TIGR01950 SoxR redox-sensitive 35.5 1.4E+02 0.003 21.1 5.5 54 8-61 57-110 (142)
70 TIGR00012 L29 ribosomal protei 34.9 80 0.0017 18.7 3.5 28 5-32 1-28 (55)
71 cd04769 HTH_MerR2 Helix-Turn-H 34.4 1.4E+02 0.0031 19.9 5.9 54 8-61 56-109 (116)
72 PF12548 DUF3740: Sulfatase pr 34.2 75 0.0016 22.9 3.9 26 35-60 110-135 (145)
73 PF14775 NYD-SP28_assoc: Sperm 33.9 1.1E+02 0.0024 18.6 5.3 21 42-62 37-57 (60)
74 PF06785 UPF0242: Uncharacteri 33.3 2.3E+02 0.005 23.6 6.9 43 20-63 131-173 (401)
75 cd01109 HTH_YyaN Helix-Turn-He 33.2 1.5E+02 0.0032 19.7 6.4 27 34-60 82-108 (113)
76 KOG0837 Transcriptional activa 33.2 2.6E+02 0.0055 22.5 7.7 52 9-64 199-253 (279)
77 PF07558 Shugoshin_N: Shugoshi 32.7 67 0.0014 18.5 2.8 31 31-61 14-44 (46)
78 cd00632 Prefoldin_beta Prefold 32.6 1.5E+02 0.0032 19.6 6.8 45 17-62 57-101 (105)
79 PRK11637 AmiB activator; Provi 32.4 2.9E+02 0.0062 22.8 8.7 13 13-25 48-60 (428)
80 PF10498 IFT57: Intra-flagella 31.2 3E+02 0.0065 22.7 8.5 51 12-63 241-291 (359)
81 PF09755 DUF2046: Uncharacteri 30.8 2.1E+02 0.0046 23.3 6.3 42 19-61 23-64 (310)
82 cd04787 HTH_HMRTR_unk Helix-Tu 30.7 1.8E+02 0.0039 20.0 6.3 53 8-61 57-109 (133)
83 PF09789 DUF2353: Uncharacteri 28.9 2.4E+02 0.0052 23.1 6.4 40 24-64 73-112 (319)
84 PRK03947 prefoldin subunit alp 28.5 1.9E+02 0.0042 19.9 5.2 45 18-63 89-133 (140)
85 PF02183 HALZ: Homeobox associ 28.0 1.3E+02 0.0027 17.3 5.8 33 32-64 6-38 (45)
86 KOG0804 Cytoplasmic Zn-finger 27.9 2.9E+02 0.0063 23.9 6.8 38 24-61 375-412 (493)
87 PF09278 MerR-DNA-bind: MerR, 27.7 1.3E+02 0.0029 17.5 5.2 11 8-18 14-24 (65)
88 PF01763 Herpes_UL6: Herpesvir 27.5 2.4E+02 0.0053 24.8 6.5 38 28-65 360-397 (557)
89 PF14193 DUF4315: Domain of un 27.4 1.8E+02 0.004 18.9 6.8 34 32-65 2-35 (83)
90 PF12329 TMF_DNA_bd: TATA elem 26.5 1.7E+02 0.0037 18.4 5.6 34 30-63 25-58 (74)
91 KOG4643 Uncharacterized coiled 26.3 3E+02 0.0064 26.4 7.0 52 21-72 283-335 (1195)
92 PF08946 Osmo_CC: Osmosensory 26.1 1.5E+02 0.0032 17.4 4.0 18 35-52 23-40 (46)
93 PRK11637 AmiB activator; Provi 26.1 3.8E+02 0.0082 22.1 8.9 21 41-61 99-119 (428)
94 COG0165 ArgH Argininosuccinate 26.0 2.5E+02 0.0055 24.1 6.2 37 27-63 106-142 (459)
95 PF15619 Lebercilin: Ciliary p 25.9 2.4E+02 0.0051 21.2 5.5 35 26-60 7-41 (194)
96 PF03250 Tropomodulin: Tropomo 25.9 45 0.00098 24.3 1.6 18 6-23 21-38 (147)
97 cd04790 HTH_Cfa-like_unk Helix 25.9 2.6E+02 0.0057 20.2 5.8 47 8-61 58-104 (172)
98 TIGR01069 mutS2 MutS2 family p 25.3 5.2E+02 0.011 23.5 8.5 39 13-51 540-578 (771)
99 cd01107 HTH_BmrR Helix-Turn-He 25.1 2.1E+02 0.0046 18.9 6.1 47 8-60 58-104 (108)
100 PRK00306 50S ribosomal protein 25.1 98 0.0021 19.0 2.8 29 4-32 4-32 (66)
101 PRK13923 putative spore coat p 24.7 3E+02 0.0064 20.5 6.2 9 6-14 100-108 (170)
102 PF05812 Herpes_BLRF2: Herpesv 24.7 1.6E+02 0.0034 20.7 4.0 24 40-63 5-28 (118)
103 PF09803 DUF2346: Uncharacteri 24.7 1.9E+02 0.004 18.7 4.2 24 20-43 53-76 (80)
104 PF12718 Tropomyosin_1: Tropom 24.6 2.6E+02 0.0057 19.8 7.0 51 14-64 82-134 (143)
105 PF13805 Pil1: Eisosome compon 24.2 1.7E+02 0.0036 23.4 4.6 26 20-46 135-160 (271)
106 KOG1853 LIS1-interacting prote 24.0 1.8E+02 0.004 23.4 4.7 19 16-34 91-109 (333)
107 PRK00409 recombination and DNA 23.9 5.6E+02 0.012 23.4 8.7 45 13-57 545-589 (782)
108 PF09514 SSXRD: SSXRD motif; 23.8 10 0.00022 20.9 -1.6 21 21-41 7-27 (34)
109 COG5420 Uncharacterized conser 23.7 1.6E+02 0.0035 18.6 3.5 28 34-61 2-29 (71)
110 cd00584 Prefoldin_alpha Prefol 23.5 2.4E+02 0.0052 19.0 5.1 38 19-57 83-120 (129)
111 PF15254 CCDC14: Coiled-coil d 23.4 4.5E+02 0.0097 24.4 7.5 43 16-63 438-480 (861)
112 PF14915 CCDC144C: CCDC144C pr 23.1 4.2E+02 0.0091 21.6 7.4 50 16-65 232-291 (305)
113 PF13815 Dzip-like_N: Iguana/D 22.8 2.5E+02 0.0055 19.0 7.0 23 39-61 81-103 (118)
114 PHA03155 hypothetical protein; 22.7 1.5E+02 0.0031 20.8 3.5 24 40-63 10-33 (115)
115 PF07798 DUF1640: Protein of u 22.7 3E+02 0.0066 19.9 8.3 51 10-60 45-95 (177)
116 PF00831 Ribosomal_L29: Riboso 22.4 67 0.0015 19.2 1.6 27 6-32 4-30 (58)
117 PHA02414 hypothetical protein 22.3 2.7E+02 0.0058 19.1 5.3 43 12-55 39-81 (111)
118 PHA03162 hypothetical protein; 22.1 1.5E+02 0.0032 21.3 3.5 24 40-63 15-38 (135)
119 PF08781 DP: Transcription fac 22.0 3.1E+02 0.0068 19.7 7.7 44 12-57 1-44 (142)
120 COG2433 Uncharacterized conser 21.8 3.8E+02 0.0082 24.1 6.6 20 11-30 421-440 (652)
121 PRK10884 SH3 domain-containing 21.6 3.7E+02 0.0079 20.4 8.1 26 38-63 132-157 (206)
122 TIGR00293 prefoldin, archaeal 21.3 2.7E+02 0.0058 18.7 5.3 40 18-58 81-120 (126)
123 cd01108 HTH_CueR Helix-Turn-He 20.9 2.8E+02 0.0061 18.8 6.2 51 8-59 57-107 (127)
124 cd01110 HTH_SoxR Helix-Turn-He 20.2 3.1E+02 0.0068 19.1 6.0 53 8-61 57-110 (139)
125 cd01282 HTH_MerR-like_sg3 Heli 20.1 2.8E+02 0.006 18.4 5.8 24 34-57 84-107 (112)
126 PRK09413 IS2 repressor TnpA; R 20.0 2.9E+02 0.0063 18.6 7.0 26 36-61 76-101 (121)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.73 E-value=1.4e-17 Score=113.03 Aligned_cols=62 Identities=48% Similarity=0.775 Sum_probs=60.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 1 MMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 1 ~~GedL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~ 62 (122)
++|+||++||++||..||++|+.||.+||+||+++|.++|+.+++|++.+.++|..|+.+++
T Consensus 38 ~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 38 LMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred cccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999998874
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.61 E-value=0.24 Score=31.73 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 9 LSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 9 Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
++++-|..||..+..|+..|.. +..+++.++.+...+.++|..|..+.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999975 555667888887777777777776655543
No 3
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=1.5 Score=28.27 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 9 LSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 9 Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
||++=|..||..+..|+.-| .++.-+|+++|.|-..|..+-..+....++..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 57888999999999999987 46777888999888877777766665555544
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=89.85 E-value=3.1 Score=25.42 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|..+-|.||...+ ..|..++..|..+|..|..++.....
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889987766 89999999999999999999877654
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.40 E-value=4.4 Score=26.51 Aligned_cols=43 Identities=28% Similarity=0.450 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 9 LSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVE 56 (122)
Q Consensus 9 Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~ 56 (122)
||++=|.+||..+..|+.-|- ++.-+|+.+|.|-..+.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999884 5666778888887777766555
No 6
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=89.08 E-value=4.3 Score=28.05 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
|+.|.+||+++..-+..|..-|..+. .+-..-..|.-||..|+..+..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~-----el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLA-----ELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999887777766554433 3444455566666666666654
No 7
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=88.92 E-value=0.92 Score=31.36 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 39 EIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 39 ~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
++..+|||.+.|+|||+.|+-|++..
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999998765
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.27 E-value=5.9 Score=27.17 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~ 62 (122)
++.|..||++|..-+..|..-|.++. .+-..-..|.-||..|+..+.
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~-----~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQ-----ELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888766655555443322 233333334444444444443
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=85.79 E-value=5.4 Score=23.58 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 22 EMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 22 e~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
-.|..+-|.||-..+ ..+..++..|..+|..|..++..+.
T Consensus 13 r~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 13 REAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777788885555 7888999999999999988886653
No 10
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.50 E-value=2.5 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYK 59 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~ 59 (122)
+++.++|..|..+...|+.||..|+.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666643
No 11
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.80 E-value=6.7 Score=23.84 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|-.+.|.||...+ +.|..++..|..+|..|...+.....
T Consensus 15 ~AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 15 EAARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899997766 89999999999999999888876653
No 12
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=84.61 E-value=0.094 Score=38.43 Aligned_cols=40 Identities=43% Similarity=0.525 Sum_probs=36.9
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 2 MGEELSGLSV-KDLQNLENQLEMSLRGVRMKKDQILMDEIQ 41 (122)
Q Consensus 2 ~GedL~~Ls~-~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~ 41 (122)
+|++|.++++ .+|..+|.+++.++..+|..+...+..++.
T Consensus 137 ~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 137 TGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNF 177 (195)
T ss_pred hccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhh
Confidence 5889999999 999999999999999999999998877775
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.48 E-value=3.4 Score=25.56 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=20.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 043067 2 MGEELSGLSVKDLQNLENQLEMSLRGVRM 30 (122)
Q Consensus 2 ~GedL~~Ls~~eL~~LE~~Le~~l~~IR~ 30 (122)
+|+||+.||+.||..==..|+.=+.++|.
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999987655555554444443
No 14
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.42 E-value=9.4 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 17 LENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 17 LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
+...+|-|+.-|..-=+--..++++.+|.+++.|.+.|..|..+
T Consensus 46 IDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666655444444566777777777777666666544
No 15
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=79.11 E-value=17 Score=26.80 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 043067 10 SVKDLQNLENQLEMSLRGVRMK---KDQILMDEIQELSRKGNLIHQ 52 (122)
Q Consensus 10 s~~eL~~LE~~Le~~l~~IR~r---K~~ll~~~i~~lkkk~~~l~e 52 (122)
+..||..|=++++.|..-||.+ |-.+|.+||+.|++.-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999976 666777777777766555444
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.22 E-value=12 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
....+..+|..+|+.+..+.+||..|+.+-+..+
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999988876665
No 17
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.94 E-value=27 Score=25.67 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRM----------KKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~----------rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+.+|..+|..++.+-+...+ .+.....++|+.++++....+.+...|.++.+..
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788777777665542 3445667788888888777777777777766543
No 18
>PF14645 Chibby: Chibby family
Probab=70.63 E-value=9.7 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 38 DEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 38 ~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
.....++++.+.|++||+.|+.+++..
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999988664
No 19
>smart00340 HALZ homeobox associated leucin zipper.
Probab=69.53 E-value=14 Score=21.40 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+.+|+--..|.++|+.|.+++++.+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999998765
No 20
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=65.85 E-value=14 Score=25.79 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=33.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 16 NLENQLEMSL----RGVRMKKDQILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 16 ~LE~~Le~~l----~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
.+|+.|+.-- --||+. -+++.++|..+..+...|++||..|+.-
T Consensus 49 KIeQAMDLVKtHLmfAVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREE-VEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666543 346664 4789999999999999999999988653
No 21
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.39 E-value=31 Score=27.15 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043067 22 EMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQE 67 (122)
Q Consensus 22 e~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~~ 67 (122)
-.|+++=|.+..... ++++.|+..|..||..|+.++.+++.+
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444 788899999999999999999887643
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.31 E-value=34 Score=23.60 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
....+..++..+|+.+..+.+||..|+.+-+..+
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999988766655
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.93 E-value=30 Score=23.38 Aligned_cols=34 Identities=9% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+...+..++..++++...++.+|..|..++....
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667778888888888999999988887765
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.14 E-value=71 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~~~ 63 (122)
...++....|.++|..|..++..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666555544
No 25
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=60.66 E-value=43 Score=22.34 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 28 VRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 28 IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
||+.=......+++.|+.+...++.+|..|...+...+
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556677788999999999999999998886643
No 26
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.29 E-value=62 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~~~ 62 (122)
..+..+|..++++...|...|+.|..+|+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888888888888877664
No 27
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=57.08 E-value=19 Score=30.86 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMK 31 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~r 31 (122)
+.++.+..-|-+.=|..|++||.|
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRK 256 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRK 256 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHH
Confidence 455566666777778888888864
No 28
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.52 E-value=58 Score=21.85 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 17 LENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 17 LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~ 62 (122)
+++..+.++..|..|+. .+...|+.+.++...+.+.-..+...+.
T Consensus 61 v~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776663 3366666666666666665555555543
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.02 E-value=50 Score=20.95 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043067 30 MKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQENME 70 (122)
Q Consensus 30 ~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~~~~~ 70 (122)
..|.+-..+.|..|+.++..|.++|..|..........+..
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35677778888899999999999999888766665544443
No 30
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=54.79 E-value=68 Score=25.46 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQL--EMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~L--e~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
-|+.||.+|=.. -..| ..|...-|.||..-| .++...++.|.++|..|+.+.
T Consensus 60 RL~HLS~EEK~~-RrKLKNRVAAQtaRDrKKaRm----~eme~~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 60 RLDHLSWEEKVQ-RRKLKNRVAAQTARDRKKARM----EEMEYEIKDLTEENEILQNEN 113 (292)
T ss_pred hhcccCHHHHHH-HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 377777765322 2222 235556788885544 444444555555555554443
No 31
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.77 E-value=23 Score=28.73 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRM------KKDQILM-------------------------------DEIQELSRKGNLIHQEN 54 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~------rK~~ll~-------------------------------~~i~~lkkk~~~l~een 54 (122)
.....||+.|..+...|.. .|+.++. -+++.+++|.+.|+++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 3455688888888877764 4444431 23588999999999999
Q ss_pred HHHHHHHHHHH
Q 043067 55 VELYKKVNLIR 65 (122)
Q Consensus 55 ~~L~~~~~~~~ 65 (122)
..|+.+.....
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99999876654
No 32
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=53.51 E-value=35 Score=18.43 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVRMKKDQILMDEIQELSR 45 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkk 45 (122)
.|..|+..+..|+..-+--+--.+.++|..+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888888887777777777777665
No 33
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=52.24 E-value=78 Score=22.00 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
|+.+..||++|-.-+.. |..+|+-...+.+||..|+-+....
T Consensus 7 Fd~v~~le~~l~~l~~e------------l~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 7 FDQVDNLEEQLGVLLAE------------LGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 56788888888665554 4555566666666666665544333
No 34
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.81 E-value=81 Score=22.11 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 22 EMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 22 e~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+.++..+..|+ +.+.-+|.+|.+.++.+++.-..|..+|..
T Consensus 69 ~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554 455666677777777777766666666543
No 35
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.79 E-value=77 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 20 QLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 20 ~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
..+.+...|..|+ +.+...|..+.++...+++.-..+...+..
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655 455566666666666666666666555543
No 36
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=51.05 E-value=81 Score=26.87 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 4 EELSGLSVKDLQNLENQLEMSLRGVRMKK---------DQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 4 edL~~Ls~~eL~~LE~~Le~~l~~IR~rK---------~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++|..||..==+.+.+++++||..|..-| .+-|+..++..+++.....+.-+....+|.+
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee 69 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEE 69 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666788899999999886543 3445555555555544444444455555544
No 37
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=50.49 E-value=22 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQ 34 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ 34 (122)
.+|.++|++-...|..|+.|=..
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 47889999999888888875433
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.47 E-value=57 Score=19.91 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677888888999999999998888776
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.67 E-value=1e+02 Score=22.73 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 7 SGLSVKDLQNLENQLEMSLRGVRM--KKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 7 ~~Ls~~eL~~LE~~Le~~l~~IR~--rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
.+|++++....=+++......... .-.+-+..++..++++...|+.++..|..++....
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766665666543222221 11234556677778888888888888877765543
No 40
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.24 E-value=40 Score=27.55 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 7 SGLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 7 ~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
.+||..|-+. |.+||.||.+++ ++|+.||..+...-++-..|
T Consensus 9 ~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 9 NDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 4566665544 457999998876 67888888877766554443
No 41
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=48.35 E-value=38 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQI 35 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~l 35 (122)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999988653
No 42
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.96 E-value=67 Score=20.07 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 33 DQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 33 ~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
...+..++..++++...++.+|..|..++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346677888999999999999999998886643
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.34 E-value=1.5e+02 Score=23.91 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQI--LMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~l--l~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
++++++.++|..+-..|..-...|..++.++ +..+...++.++....+.-..+...+.+.
T Consensus 197 e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888887777777777666553 33444444444454444445555555443
No 44
>PHA01750 hypothetical protein
Probab=47.23 E-value=73 Score=20.26 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 17 LENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 17 LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+-+.+.+|++.|=.+--.=+..+|+.+++|..++++.-..+.+++
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345556666666555555555666666666666666655555544
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.87 E-value=83 Score=27.12 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 21 LEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 21 Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
||.-|..+|.. .++|..+...++.|++.++.+|..|..++..
T Consensus 81 LEKqLaaLrqE-lq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 81 MQKQYEEIRRE-LDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444322 2456677778889999999999999988854
No 46
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=45.83 E-value=58 Score=26.55 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 17 LENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 17 LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
|-++=| |.+.-|.||.+.+ ..|..++.-|+..|+.|-.+|..+.
T Consensus 296 LmKNRE-AARECRRKKKEYV----KCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 296 LMKNRE-AARECRRKKKEYV----KCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred HHhhHH-HHHHHHHhHhHHH----HHHHhHHHHHhcccHHHHHHHHHHH
Confidence 444444 4455555565555 6888899999999999987776543
No 47
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=45.46 E-value=1.7e+02 Score=26.35 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQI---LMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~l---l~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+.|..|+++-+.=+...+.++..+ ..++++.+|.-+..|++|.+.|.-+....
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999888888888764 56778889999999999999998776554
No 48
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=45.32 E-value=83 Score=21.22 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
++..++.+-++++...+.++|..|..++...
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999999998887553
No 49
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.79 E-value=77 Score=19.84 Aligned_cols=47 Identities=26% Similarity=0.252 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
||..||..++.=+..... +..+...++.....+..|+..|..+.+..
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888777665543 33344455666666666666666665443
No 50
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.08 E-value=87 Score=20.37 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 36 LMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 36 l~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
|.+.|+..+.....|..+|.+|..-|..+
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777776666443
No 51
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.96 E-value=67 Score=23.74 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 043067 14 LQNLENQLEMSLRGVRMKKDQILMDEIQ---ELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 14 L~~LE~~Le~~l~~IR~rK~~ll~~~i~---~lkkk~~~l~een~~L~~~~ 61 (122)
|..+|..+..|+.+ +-+|..+|+ .|+-+.+.|.+|-..|+.++
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888864 345655554 33334444555555555444
No 52
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=42.29 E-value=94 Score=20.09 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 33 DQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 33 ~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
...+..+++.+++....++++|..|.-+.....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667789999999999999999988876653
No 53
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.12 E-value=2.4e+02 Score=25.26 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRM-----KKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~-----rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+++..||..|+..-.+++. |+.+.+...|..|+++...-...-..|..++....
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776653 34455667777777777666666666766665543
No 54
>PLN02372 violaxanthin de-epoxidase
Probab=40.80 E-value=1.7e+02 Score=25.00 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQE 53 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~ee 53 (122)
++|..++|++++.-+.+|+..-..++..+ .+.+..+.|++.
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~~--~~~~~~~~l~~~ 418 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKRV--ALEEGLKELEQD 418 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 67888899999999999988777766543 344444444433
No 55
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=40.65 E-value=84 Score=23.90 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 31 KKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 31 rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
|+-+....+|..||.--..|+++|..|+.-+
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788877777888888887655
No 56
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.49 E-value=1.5e+02 Score=21.84 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+.+|......|..+|..+.. .+-+..+|..|++....+.+.-+.+...|...
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~--hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQE--HQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999998843 44556677777777777666666666665444
No 57
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=40.49 E-value=49 Score=19.70 Aligned_cols=11 Identities=45% Similarity=0.465 Sum_probs=6.8
Q ss_pred CCCCCHHHHHH
Q 043067 6 LSGLSVKDLQN 16 (122)
Q Consensus 6 L~~Ls~~eL~~ 16 (122)
|..+|++||+.
T Consensus 5 Lk~ls~~eL~~ 15 (49)
T PF11629_consen 5 LKFLSYEELQQ 15 (49)
T ss_dssp GGGS-HHHHHH
T ss_pred HhhCCHHHHHH
Confidence 55678887764
No 58
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.30 E-value=91 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043067 47 GNLIHQENVELYKKVNL 63 (122)
Q Consensus 47 ~~~l~een~~L~~~~~~ 63 (122)
-..|+=||..|+..+..
T Consensus 38 N~~L~lENe~LR~RL~~ 54 (114)
T COG4467 38 NTALRLENEKLRERLGE 54 (114)
T ss_pred hHHHHhhHHHHHHHhCC
Confidence 34455555556555544
No 59
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.98 E-value=1.9e+02 Score=22.90 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=29.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 2 MGEELSGLSVKDLQNLENQLEMSLRGVRMKKD------QILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 2 ~GedL~~Ls~~eL~~LE~~Le~~l~~IR~rK~------~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
.|-|++.+.++ -.++.|.+||-+---+-- -=|.+..+.+|.|...+++++..|...+..
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677766654 334445444432221111 123444456666666666666666555544
No 60
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=38.68 E-value=1.1e+02 Score=24.20 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 18 ENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 18 E~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+.........|..||.++| +.+.+|...|+++...|...+....
T Consensus 77 ~~~~~e~~~~l~~Kk~eLi----~~l~~kl~~L~~eqe~l~ee~~~n~ 120 (264)
T PF08687_consen 77 SDSDDENDNDLNAKKVELI----ESLSKKLEVLQEEQEALQEEIQANE 120 (264)
T ss_dssp ---------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677899999998 7899999999999999988776543
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=38.63 E-value=88 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
+.+..+...|+.++..+..++..|...
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666655443
No 62
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.26 E-value=2e+02 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKK 32 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK 32 (122)
-|+..+|+.|..++..++..-
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~ 178 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQL 178 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 367788999999998887743
No 63
>smart00030 CLb CLUSTERIN Beta chain.
Probab=38.17 E-value=1.8e+02 Score=22.28 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 4 EELSGLSVKDLQNLENQLEMSLRGVRMKKD---------QILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 4 edL~~Ls~~eL~~LE~~Le~~l~~IR~rK~---------~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++|..||..==+.+.+++++||..|..-|. +-|+..++..+++.......-+....+|.+
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E 75 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKE 75 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667788999999999866542 234444555555433333333333444433
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.14 E-value=2.1e+02 Score=22.90 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQI--LMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~l--l~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+++.++..+|..|-..|...-..|..+|..+ +..+...++.++..+.++-..+...+.+.
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999988888888777664 34455555555666666666666665543
No 65
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=37.58 E-value=1.2e+02 Score=20.07 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQILMD--EIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll~~--~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
.|++..|+-|-.=|.--++-|.+.+.. .++.+. ++|..++.-..|..++...
T Consensus 2 ~dv~~mE~~Ll~Ll~dF~sGkl~aFG~~cs~eqM~-~IReqQE~LarlHfeL~~~ 55 (90)
T PF13270_consen 2 SDVRHMEKGLLQLLEDFHSGKLQAFGKECSMEQMT-KIREQQEKLARLHFELDSE 55 (90)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHcCCCCcHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 578888999999999999999998877 455543 4888888888888877553
No 66
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.57 E-value=97 Score=18.89 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 31 KKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 31 rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
.|..-|..++.+|..|+..|..+-..++..+....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778889999999999999999999988876543
No 67
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=37.40 E-value=2.6e+02 Score=23.72 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 10 SVKDLQNLENQLEMSLRGVRMKKDQILMDEIQ 41 (122)
Q Consensus 10 s~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~ 41 (122)
+=.|..+||++|-.+..-|-+||.+..+.+.+
T Consensus 184 ee~di~~lErrL~qtmdmiisKKkk~a~~~l~ 215 (462)
T KOG2417|consen 184 EETDIIQLERRLAQTMDMIISKKKKMAMAQLE 215 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999998887753
No 68
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.60 E-value=1.3e+02 Score=19.95 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 18 ENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 18 E~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
|..++.|...+..|+ ..+..+++.+.+....+..+-..+...+
T Consensus 82 e~~~~eA~~~l~~r~-~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 82 EKSLEEAIEFLKKRL-ETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444 4555566666666666666555555444
No 69
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=35.48 E-value=1.4e+02 Score=21.08 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+++++++..+=..+...-...-..-..++.+++..+.++...|+.--..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777655432211111111123555556666666666666655555443
No 70
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=34.87 E-value=80 Score=18.69 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKK 32 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK 32 (122)
||-++|.+||...-..+...|-..|-.+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888777777543
No 71
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.40 E-value=1.4e+02 Score=19.94 Aligned_cols=54 Identities=19% Similarity=0.056 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+++++|+..+=...+.+-...-..-..++.++++.+.++...++..-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665533322211011111124555556666666666655555555444
No 72
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=34.18 E-value=75 Score=22.91 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
.|..+|+.|+.|+..|.+.-..|+..
T Consensus 110 ~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 110 HIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999998888654
No 73
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=33.87 E-value=1.1e+02 Score=18.57 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043067 42 ELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 42 ~lkkk~~~l~een~~L~~~~~ 62 (122)
.+-.....|+.+|..|+.-+.
T Consensus 37 ~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556788888988876653
No 74
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.28 E-value=2.3e+02 Score=23.65 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 20 QLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 20 ~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+||..+.+.+.++- -+.-+++.+++..+..++++..|.+++++
T Consensus 131 ~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 131 HLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 44444555555442 23334555555555555555555555443
No 75
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.23 E-value=1.5e+02 Score=19.71 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
.++.+++..+..+...++..-..|..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYK 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444433
No 76
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=33.20 E-value=2.6e+02 Score=22.46 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 9 LSVKDLQNLEN---QLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 9 Ls~~eL~~LE~---~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+-..|+..||+ .=..|..+-|.||. +.|..|++|+..+.-.|..|...+...
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkL----drisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKL----DRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 44567788887 23446677777774 455888899888888888776665443
No 77
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=32.65 E-value=67 Score=18.51 Aligned_cols=31 Identities=35% Similarity=0.399 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 31 KKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 31 rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
|....+.-.|..+.++.-.|..||..|+..+
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3344566677778888888888888877654
No 78
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.58 E-value=1.5e+02 Score=19.56 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 17 LENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVN 62 (122)
Q Consensus 17 LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~ 62 (122)
++...+.+...+-.++ +.+...|+.+.++...+..+-..+..++.
T Consensus 57 v~~~~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 57 VKQEKEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred hhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555 34455556666666666666555555553
No 79
>PRK11637 AmiB activator; Provisional
Probab=32.40 E-value=2.9e+02 Score=22.82 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSL 25 (122)
Q Consensus 13 eL~~LE~~Le~~l 25 (122)
+|.++++++...-
T Consensus 48 ~l~~l~~qi~~~~ 60 (428)
T PRK11637 48 QLKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 80
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.21 E-value=3e+02 Score=22.68 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
..|..|-..+..+|.+|.+|- +.|.+|++.+-..-+..+.+-.....++.+
T Consensus 241 ~~L~kl~~~i~~~lekI~sRE-k~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESRE-KYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999998865 667777777777766666666666555544
No 81
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.77 E-value=2.1e+02 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 19 NQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 19 ~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
.+|...+..++. ++.++..+.++.+-+.+.|+++|..|+..-
T Consensus 23 ~~l~~~~~sL~q-en~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQ-ENRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566665 577777788888888888888888887653
No 82
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=30.73 E-value=1.8e+02 Score=19.98 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
++|++|+..+=...+.+-... ..-..++..+++.+.++...++..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888777644322211111 11135666777777777777766666665554
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.93 E-value=2.4e+02 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 24 SLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 24 ~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
-|...|.+. +-+..+++.+++|...++.+++.|+.++...
T Consensus 73 lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 73 LLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 334444433 4667888899999999999999999887654
No 84
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.53 E-value=1.9e+02 Score=19.86 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 18 ENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 18 E~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
|..++.|+.-+..|+ ..+...++.+.+....+.+.-..+...+..
T Consensus 89 E~~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 89 EKDLDEAIEILDKRK-EELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666766666555 444556666666666666665555555443
No 85
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.99 E-value=1.3e+02 Score=17.31 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
-+..+...-+.++..-..|..+|..|+.++...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888998888887654
No 86
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.93 E-value=2.9e+02 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 24 SLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 24 ~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+.++|=++|...+...++.+.+..+.+.|+|+.|.+..
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45566667777888888888888888888888886554
No 87
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=27.74 E-value=1.3e+02 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=5.7
Q ss_pred CCCHHHHHHHH
Q 043067 8 GLSVKDLQNLE 18 (122)
Q Consensus 8 ~Ls~~eL~~LE 18 (122)
++|++|++.+=
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 46777776654
No 88
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=27.49 E-value=2.4e+02 Score=24.83 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 28 VRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 28 IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
|..-=.+.|.++|.++-+-+..|.++|..+..++...+
T Consensus 360 v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e 397 (557)
T PF01763_consen 360 VSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELE 397 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455678999999999999999999999999997765
No 89
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=27.38 E-value=1.8e+02 Score=18.95 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
|-+.|..+|+..+.|+..++...+.|..+..+.+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665554443
No 90
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.54 E-value=1.7e+02 Score=18.39 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 30 MKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 30 ~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+++.....+.|..|+.+...++.....|..++..
T Consensus 25 Sk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 25 SKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666655544
No 91
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.31 E-value=3e+02 Score=26.39 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 043067 21 LEMSLRGVRMKKDQ-ILMDEIQELSRKGNLIHQENVELYKKVNLIRQENMELY 72 (122)
Q Consensus 21 Le~~l~~IR~rK~~-ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~~~~~~~ 72 (122)
|+.-|.+.|.|-++ -+..+|-++++|...++.++...+.++++...++..++
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 56667777777654 56677888899999999999888888887765554433
No 92
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.05 E-value=1.5e+02 Score=17.40 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQ 52 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~e 52 (122)
=+..+|..|.+|-..|..
T Consensus 23 did~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 23 DIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566555444433
No 93
>PRK11637 AmiB activator; Provisional
Probab=26.05 E-value=3.8e+02 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~ 61 (122)
..+++++..++.+-..+..++
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 94
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=26.02 E-value=2.5e+02 Score=24.13 Aligned_cols=37 Identities=22% Similarity=-0.057 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 27 GVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 27 ~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
-=|+|=+++-..-.-.+|++...+.+....|+.-+-.
T Consensus 106 tgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~ 142 (459)
T COG0165 106 TGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD 142 (459)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888887777778888888888888888776643
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.93 E-value=2.4e+02 Score=21.16 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 26 RGVRMKKDQILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 26 ~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
-..|.-|..-+.+++..++.+...+..||..|..-
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788899999999999999999988643
No 96
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=25.91 E-value=45 Score=24.26 Aligned_cols=18 Identities=50% Similarity=0.697 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 043067 6 LSGLSVKDLQNLENQLEM 23 (122)
Q Consensus 6 L~~Ls~~eL~~LE~~Le~ 23 (122)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 568999999999977743
No 97
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.89 E-value=2.6e+02 Score=20.25 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+++++|+..+=..-... ...++.+++..+.++...++.....|...+
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666643322221 224455556666666666655555555444
No 98
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.29 E-value=5.2e+02 Score=23.51 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIH 51 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~ 51 (122)
++..+.+.++.-...++.+|.+++..--+..++-.+...
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666444443333333333
No 99
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.13 E-value=2.1e+02 Score=18.89 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
++++.|+..+=..... ..-..++..+++.+.++...++..-..|...
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555333221 2333455555555555555555554444433
No 100
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=25.06 E-value=98 Score=18.97 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043067 4 EELSGLSVKDLQNLENQLEMSLRGVRMKK 32 (122)
Q Consensus 4 edL~~Ls~~eL~~LE~~Le~~l~~IR~rK 32 (122)
.+|-.+|.+||...-..+..-|-..|-.+
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999888888888888887544
No 101
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=24.73 E-value=3e+02 Score=20.48 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.9
Q ss_pred CCCCCHHHH
Q 043067 6 LSGLSVKDL 14 (122)
Q Consensus 6 L~~Ls~~eL 14 (122)
..+++++++
T Consensus 100 ~~~it~~~v 108 (170)
T PRK13923 100 ISDLTLEDV 108 (170)
T ss_pred cccCCHHHH
Confidence 456777766
No 102
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=24.73 E-value=1.6e+02 Score=20.69 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 40 IQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 40 i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++.|-.+...|+-||+.|.+++..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 477888889999999999998854
No 103
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=24.65 E-value=1.9e+02 Score=18.73 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 20 QLEMSLRGVRMKKDQILMDEIQEL 43 (122)
Q Consensus 20 ~Le~~l~~IR~rK~~ll~~~i~~l 43 (122)
.|+.-...+|.+|.+-+..+++..
T Consensus 53 ele~~~~~~~~k~~~rl~~~~e~~ 76 (80)
T PF09803_consen 53 ELEEFKEELRKKREERLLREMEEE 76 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544433
No 104
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.57 E-value=2.6e+02 Score=19.78 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 14 LQNLENQLEMSLRGVRMKKDQ--ILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 14 L~~LE~~Le~~l~~IR~rK~~--ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+..||+.|+.+=.+++..-.+ -..-..+.+.+++..|..+...+-.++..+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556666666666666554433 233444566677777777777776666554
No 105
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=24.23 E-value=1.7e+02 Score=23.42 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 20 QLEMSLRGVRMKKDQILMDEIQELSRK 46 (122)
Q Consensus 20 ~Le~~l~~IR~rK~~ll~~~i~~lkkk 46 (122)
+.|.+|.-+|.+|..+ ..+|..++.|
T Consensus 135 ~~E~sl~p~R~~r~~l-~d~I~kLk~k 160 (271)
T PF13805_consen 135 NREESLQPSRDRRRKL-QDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHhHHH-HHHHHHHHhc
Confidence 4566777888888654 6888888865
No 106
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.04 E-value=1.8e+02 Score=23.36 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043067 16 NLENQLEMSLRGVRMKKDQ 34 (122)
Q Consensus 16 ~LE~~Le~~l~~IR~rK~~ 34 (122)
+-+.+|+.-+...++.|++
T Consensus 91 ~q~s~Leddlsqt~aikeq 109 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQ 109 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666644
No 107
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.92 E-value=5.6e+02 Score=23.36 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
++..+...++.-......+|.+++...-+..++..+....+-..+
T Consensus 545 e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~ 589 (782)
T PRK00409 545 EAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEI 589 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666554444444444444443333
No 108
>PF09514 SSXRD: SSXRD motif; InterPro: IPR019041 Protein SSX1 can repress transcription, and this has been attributed to a putative Kruppel associated box (KRAB) repression domain at the N terminus. However, from the analysis of these deletion constructs further repression activity was found at the C terminus of SSX1. Which has been called the SSXRD (SSX Repression Domain). The potent repression exerted by full-length SSX1 appears to localise to this region []. ; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.82 E-value=10 Score=20.88 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043067 21 LEMSLRGVRMKKDQILMDEIQ 41 (122)
Q Consensus 21 Le~~l~~IR~rK~~ll~~~i~ 41 (122)
.+....+.|.||+.+..++|.
T Consensus 7 v~vw~~rLRERk~~~~YeEIS 27 (34)
T PF09514_consen 7 VNVWMYRLRERKNPVAYEEIS 27 (34)
T ss_pred cchhhhhhhhhccccceeecc
Confidence 455677888888777666554
No 109
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=23.72 E-value=1.6e+02 Score=18.59 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
++.+..++.+++|++.|+-......-.+
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm~L 29 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKMEL 29 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 4567788888899888876655444444
No 110
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.45 E-value=2.4e+02 Score=19.00 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 19 NQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 19 ~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
..++.|..-+..|+ +.+...++.+.+....+.++-..+
T Consensus 83 ~~~~eA~~~l~~r~-~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 83 KDLEEAIEFLDKKI-EELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455553333332 444444444444444444444433
No 111
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.42 E-value=4.5e+02 Score=24.42 Aligned_cols=43 Identities=30% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 16 NLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 16 ~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
.|+.+|..+++.. +++....++|-|-+..+.+||+.|...+.+
T Consensus 438 ~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 438 SLQNQLQESLKSQ-----ELLQSKNEELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665543 344444455556666666777766665533
No 112
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=23.05 E-value=4.2e+02 Score=21.60 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 16 NLENQLEMSLRGVRMKKDQILMDEI----------QELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 16 ~LE~~Le~~l~~IR~rK~~ll~~~i----------~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
-|.++|+.|-.++-.+..-++.-|- ....+.+-.|++.|+.|..++....
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4789999999988776644443331 2344556667888888887776654
No 113
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.78 E-value=2.5e+02 Score=18.98 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 39 EIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 39 ~i~~lkkk~~~l~een~~L~~~~ 61 (122)
++..++++.+.+.+++..|..++
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 114
>PHA03155 hypothetical protein; Provisional
Probab=22.74 E-value=1.5e+02 Score=20.77 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 40 IQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 40 i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++.|.++...|+-||+.|.+++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356667777788888888887743
No 115
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.72 E-value=3e+02 Score=19.89 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 10 SVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 10 s~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
+-.|+..++..+..++..+|.--..+-..++..++.....|..+-..|..+
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888886554444444455554444444444444333
No 116
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=22.39 E-value=67 Score=19.22 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043067 6 LSGLSVKDLQNLENQLEMSLRGVRMKK 32 (122)
Q Consensus 6 L~~Ls~~eL~~LE~~Le~~l~~IR~rK 32 (122)
|-.||.+||...-..+...|-..|..+
T Consensus 4 lr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 4 LRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 117
>PHA02414 hypothetical protein
Probab=22.26 E-value=2.7e+02 Score=19.07 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENV 55 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~ 55 (122)
.||+.+=-.|+.-+. |-+.|.-.|.-||..|.+++..|.+-|.
T Consensus 39 ~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 39 AELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred HHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHHHHHHhccc
Confidence 344444333333332 4456667777788888888877776664
No 118
>PHA03162 hypothetical protein; Provisional
Probab=22.14 E-value=1.5e+02 Score=21.30 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 40 IQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 40 i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++.|-.+...|+-||+.|.+++..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777788888888888888744
No 119
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.99 E-value=3.1e+02 Score=19.74 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
.|...||..-.....+|+.|+.++- ++.....=.++|.+.|..+
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~Lq--EL~~Q~va~knLv~RN~~~ 44 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQ--ELILQQVAFKNLVQRNRQL 44 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999988886543 1122222234455555444
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=3.8e+02 Score=24.13 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043067 11 VKDLQNLENQLEMSLRGVRM 30 (122)
Q Consensus 11 ~~eL~~LE~~Le~~l~~IR~ 30 (122)
.+++..++..++.==..++.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~ 440 (652)
T COG2433 421 EKRIKKLEETVERLEEENSE 440 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444433
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.55 E-value=3.7e+02 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 38 DEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 38 ~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
.+|..++++-..|.++...+..+++.
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444433
No 122
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.32 E-value=2.7e+02 Score=18.70 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 18 ENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELY 58 (122)
Q Consensus 18 E~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~ 58 (122)
|..++.|..-+..|+ ..+..+++.+.+....+.++-..+.
T Consensus 81 E~~~~eA~~~l~~~~-~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 81 EKDAEEAIEFLKKRI-EELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EecHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555544 3344455555555555444444443
No 123
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=20.93 E-value=2.8e+02 Score=18.83 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYK 59 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 59 (122)
++|++|+..+=.....+-... ..-..++..+++.+.++...++.....|..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~ 107 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQ 107 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766433221110001 111245666666666666666555555543
No 124
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=20.19 E-value=3.1e+02 Score=19.08 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSL-RGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l-~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+++++|+..+=..+..+- ..+.. -..++..+++.+.++...|+.--..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKAD-WERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766433222110 01111 113444445555666666655555554443
No 125
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.15 E-value=2.8e+02 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L 57 (122)
+++..++..+..+...++..-..|
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L 107 (112)
T cd01282 84 AVLRRELARIDRQIADLTRSRDRL 107 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444
No 126
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.04 E-value=2.9e+02 Score=18.60 Aligned_cols=26 Identities=35% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 36 LMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 36 l~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
...++..|+++...|..|+..|.+.+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888887776654
Done!