Query 043067
Match_columns 122
No_of_seqs 139 out of 1246
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 92.1 1.5 5E-05 27.9 10.0 46 9-59 3-48 (81)
2 2dgc_A Protein (GCN4); basic d 91.7 0.92 3.1E-05 27.3 6.7 39 23-65 19-57 (63)
3 1dh3_A Transcription factor CR 90.6 1.4 4.9E-05 25.7 6.5 38 24-65 12-49 (55)
4 1t2k_D Cyclic-AMP-dependent tr 90.5 1.7 5.8E-05 25.7 7.3 41 23-67 11-51 (61)
5 1jnm_A Proto-oncogene C-JUN; B 89.5 2.1 7.2E-05 25.3 6.9 40 23-66 11-50 (62)
6 2wt7_A Proto-oncogene protein 88.9 2.4 8.3E-05 25.2 7.3 40 23-66 12-51 (63)
7 1ci6_A Transcription factor AT 85.9 3.9 0.00013 24.4 7.3 41 23-67 12-52 (63)
8 1dip_A Delta-sleep-inducing pe 84.0 1.8 6.2E-05 27.1 4.4 26 34-59 18-43 (78)
9 3nmd_A CGMP dependent protein 81.0 7.7 0.00026 24.0 7.4 45 14-63 21-65 (72)
10 1hjb_A Ccaat/enhancer binding 77.2 12 0.0004 23.9 6.8 40 23-66 25-64 (87)
11 2oqq_A Transcription factor HY 76.3 7.8 0.00027 21.5 5.4 26 36-61 15-40 (42)
12 1gu4_A CAAT/enhancer binding p 75.7 12 0.00041 23.3 6.8 40 23-66 25-64 (78)
13 2yy0_A C-MYC-binding protein; 74.1 8.3 0.00028 22.3 4.9 27 35-61 23-49 (53)
14 2w6a_A ARF GTPase-activating p 68.1 17 0.00057 21.7 8.6 52 7-58 8-61 (63)
15 1gd2_E Transcription factor PA 66.4 19 0.00066 21.9 6.5 43 22-64 17-62 (70)
16 3thf_A Protein shroom; coiled- 63.1 18 0.00061 26.4 5.7 36 26-65 11-46 (190)
17 3oja_B Anopheles plasmodium-re 62.1 55 0.0019 26.4 9.2 20 42-61 555-574 (597)
18 1go4_E MAD1 (mitotic arrest de 61.2 17 0.00059 23.8 4.9 28 38-65 12-39 (100)
19 3s9g_A Protein hexim1; cyclin 59.0 35 0.0012 22.4 8.3 56 5-61 26-88 (104)
20 2dfs_A Myosin-5A; myosin-V, in 57.2 55 0.0019 29.5 8.9 25 41-65 1019-1043(1080)
21 1g6u_A Domain swapped dimer; d 53.9 26 0.00089 19.3 4.7 22 7-28 15-36 (48)
22 1e52_A Excinuclease ABC subuni 53.4 14 0.00048 22.1 3.2 42 5-46 13-58 (63)
23 2l5g_A GPS2 protein, G protein 52.9 22 0.00077 19.1 3.6 21 38-58 15-35 (38)
24 1a93_B MAX protein, coiled coi 51.8 25 0.00086 18.6 3.9 23 31-53 7-29 (34)
25 2aze_A Transcription factor DP 50.8 62 0.0021 22.7 7.7 46 10-57 3-48 (155)
26 3uux_B Mitochondrial division 48.1 86 0.0029 23.6 9.8 58 8-66 148-205 (242)
27 1j1d_C Troponin I, TNI; THIN f 48.0 63 0.0022 22.0 7.6 32 5-36 54-85 (133)
28 3gp4_A Transcriptional regulat 47.9 60 0.0021 21.8 8.2 57 8-65 59-115 (142)
29 1j1e_C Troponin I, TNI; THIN f 42.9 89 0.0031 22.4 6.6 32 5-36 54-85 (180)
30 3hnw_A Uncharacterized protein 41.9 79 0.0027 21.4 9.1 52 13-64 76-129 (138)
31 1j1d_B Troponin T, TNT; THIN f 40.1 76 0.0026 20.7 6.8 32 5-36 38-69 (106)
32 1ci6_A Transcription factor AT 39.2 57 0.002 19.0 5.7 30 32-61 31-60 (63)
33 1gk7_A Vimentin; intermediate 39.2 45 0.0016 17.9 4.9 26 36-61 11-36 (39)
34 1t2k_D Cyclic-AMP-dependent tr 37.3 59 0.002 18.6 5.4 27 34-60 32-58 (61)
35 3azd_A Short alpha-tropomyosin 36.9 19 0.00065 19.2 1.7 26 38-63 4-29 (37)
36 3gpv_A Transcriptional regulat 36.1 97 0.0033 20.8 7.5 55 8-63 73-127 (148)
37 1ytz_T Troponin T; muscle, THI 35.7 92 0.0031 20.4 6.9 32 5-36 38-69 (107)
38 3oja_A Leucine-rich immune mol 35.7 1.3E+02 0.0044 23.7 7.2 40 21-64 422-461 (487)
39 1deq_A Fibrinogen (alpha chain 31.9 2E+02 0.0068 23.1 8.0 22 14-35 58-79 (390)
40 2jo8_A Serine/threonine-protei 31.8 55 0.0019 18.8 3.2 11 6-16 7-17 (51)
41 1a92_A Delta antigen; leucine 31.1 76 0.0026 18.0 5.3 24 34-57 17-40 (50)
42 2zxx_A Geminin; coiled-coil, c 30.9 96 0.0033 19.3 4.5 31 33-63 36-66 (79)
43 3ra3_B P2F; coiled coil domain 30.5 53 0.0018 16.1 2.6 16 48-63 3-18 (28)
44 3s4r_A Vimentin; alpha-helix, 30.3 1E+02 0.0036 19.3 9.7 29 35-63 53-81 (93)
45 3q4f_C DNA repair protein XRCC 30.2 62 0.0021 23.4 4.0 24 37-60 160-183 (186)
46 1am9_A Srebp-1A, protein (ster 28.2 1E+02 0.0034 18.8 4.4 23 41-63 53-75 (82)
47 3m48_A General control protein 27.8 71 0.0024 16.6 3.4 23 42-64 4-26 (33)
48 2wh0_Q Pkcev3, protein kinase 27.7 46 0.0016 16.7 2.1 15 12-26 13-27 (31)
49 1nkp_B MAX protein, MYC proto- 27.6 1E+02 0.0036 18.5 6.2 20 42-61 58-77 (83)
50 2l5g_B Putative uncharacterize 26.7 86 0.0029 17.2 5.2 15 39-53 24-38 (42)
51 3w03_C DNA repair protein XRCC 26.1 1.2E+02 0.004 21.8 4.9 29 35-63 149-177 (184)
52 3mtu_A Tropomyosin alpha-1 cha 26.1 1.1E+02 0.0039 18.4 7.1 38 28-65 6-43 (75)
53 2dfs_A Myosin-5A; myosin-V, in 25.6 3.7E+02 0.013 24.2 9.2 17 13-29 971-987 (1080)
54 2ygg_A Sodium/hydrogen exchang 25.5 1E+02 0.0035 18.8 3.8 24 8-31 3-26 (70)
55 1uii_A Geminin; human, DNA rep 25.4 1.3E+02 0.0045 18.9 5.6 23 36-58 51-73 (83)
56 1q08_A Zn(II)-responsive regul 25.1 1.2E+02 0.0041 18.3 6.6 53 8-61 16-69 (99)
57 2zqm_A Prefoldin beta subunit 24.8 1.3E+02 0.0046 18.8 7.2 43 20-63 67-109 (117)
58 2v66_B Nuclear distribution pr 24.2 1.6E+02 0.0054 19.4 9.6 57 12-68 6-65 (111)
59 2oxj_A Hybrid alpha/beta pepti 24.1 87 0.003 16.4 3.8 23 41-63 4-26 (34)
60 1lwu_C Fibrinogen gamma chain; 23.6 2.6E+02 0.0088 21.6 7.2 41 12-57 12-52 (323)
61 1fxk_A Prefoldin; archaeal pro 23.0 1.4E+02 0.0048 18.4 6.5 40 21-61 63-102 (107)
62 1p9i_A Cortexillin I/GCN4 hybr 22.8 83 0.0029 15.7 3.1 19 45-63 6-24 (31)
63 3hnw_A Uncharacterized protein 21.3 1.9E+02 0.0067 19.4 8.8 53 12-64 68-122 (138)
64 3na7_A HP0958; flagellar bioge 21.2 2.4E+02 0.0083 20.5 6.9 43 10-52 88-132 (256)
65 2wvr_A Geminin; DNA replicatio 20.7 2.3E+02 0.0078 20.7 5.6 30 34-63 118-147 (209)
66 1jcd_A Major outer membrane li 20.1 1.3E+02 0.0046 17.1 6.0 35 31-65 4-38 (52)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.09 E-value=1.5 Score=27.93 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 9 LSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYK 59 (122)
Q Consensus 9 Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 59 (122)
+|++=|.+||..+..|+..| .++..+|+.+|.|-..|.+++..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999987 45666777888887777666666433
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.75 E-value=0.92 Score=27.31 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
.|..+.|.||...+ ..|..++..|..+|..|..++....
T Consensus 19 eAArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 19 EAARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899997666 8999999999999999999887654
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=90.58 E-value=1.4 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 24 SLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 24 ~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
|..+-|.||-..+ +.|..++..|..+|..|..++....
T Consensus 12 sA~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688886655 8899999999999999999886654
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=90.49 E-value=1.7 Score=25.65 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQE 67 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~~ 67 (122)
.|..+-|.||...+ +.+..++..+..+|..|..++.....+
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 11 AAASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788886665 889999999999999999999877643
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.52 E-value=2.1 Score=25.33 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|..+-|.||...+ ..|..++..|..+|..|..++.....
T Consensus 11 ~AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 11 IAASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889997666 89999999999999999999977654
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.95 E-value=2.4 Score=25.22 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|..+-|.||...+ ..|..++..|..+|..|..++.....
T Consensus 12 ~AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 12 MAAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788887666 89999999999999999999877653
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.91 E-value=3.9 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQE 67 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~~ 67 (122)
.|..+-|.||-.-+ +.+..+...|..+|..|..++...+.+
T Consensus 12 ~AA~R~R~KKk~~~----~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 12 TAATRYRQKKRAEQ----EALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888885544 889999999999999999998776543
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.02 E-value=1.8 Score=27.09 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYK 59 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~ 59 (122)
+++.++|.+|..|...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888887754
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.02 E-value=7.7 Score=24.03 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 14 LQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 14 L~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+..|+..|......||.|... |+.+.+.......+...|+.+++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999886533 578888888888888888877754
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.16 E-value=12 Score=23.90 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|..+=|.++-..- ..+..+...|+.+|..|..++.....
T Consensus 25 ~AarrSR~krk~r~----~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666554433 57778899999999999999987754
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.30 E-value=7.8 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 36 LMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 36 l~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+...+.+|..|+.-|+.||..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44455677788888888888887654
No 12
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.65 E-value=12 Score=23.32 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 23 MSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 23 ~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
.|+.+=|.++-..- ..+..+...|..+|..|..++.....
T Consensus 25 ~AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 25 IAVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666664433 57788999999999999999987653
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.12 E-value=8.3 Score=22.27 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
.|..++..++.|...|.+++..|+.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777665
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=68.07 E-value=17 Score=21.74 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 7 SGLSVKDLQNLENQLEMSLRGVRM--KKDQILMDEIQELSRKGNLIHQENVELY 58 (122)
Q Consensus 7 ~~Ls~~eL~~LE~~Le~~l~~IR~--rK~~ll~~~i~~lkkk~~~l~een~~L~ 58 (122)
+..++.|-..+-..|-.|=.+|-. +=+.-+.+++..+++++..|+.||..|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 457788888888888888777653 2334566777777788888888887775
No 15
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.42 E-value=19 Score=21.89 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 22 EMSLRGVRMKKDQILM---DEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 22 e~~l~~IR~rK~~ll~---~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
-.|=...|.||...|. .++..+......+..+|..|+..+..+
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999977662 233333333334445555555555443
No 16
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=63.10 E-value=18 Score=26.35 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 26 RGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 26 ~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
..|..||.+++ +.+++|...|.++...|...+....
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998 8999999999999999988876543
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.12 E-value=55 Score=26.37 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043067 42 ELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 42 ~lkkk~~~l~een~~L~~~~ 61 (122)
..+++...+.+++..+..++
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.18 E-value=17 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 38 DEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 38 ~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+++..+++++..|..||..|+.+++..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998887764
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.01 E-value=35 Score=22.35 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=37.3
Q ss_pred CCCCCCHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDL----QNLENQLEMSLRG---VRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 5 dL~~Ls~~eL----~~LE~~Le~~l~~---IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
.|.+||-.|| ..||..++.+-.. .|..- .-...+|..|..++..|..+|..|+.+-
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776655 4688888776322 22221 2235678888889999999999887654
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.24 E-value=55 Score=29.48 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+.++.|+..|+++|..|+.+++...
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888887776654
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.86 E-value=26 Score=19.30 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 043067 7 SGLSVKDLQNLENQLEMSLRGV 28 (122)
Q Consensus 7 ~~Ls~~eL~~LE~~Le~~l~~I 28 (122)
+++|++||..||..|..--+++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999998876543333
No 22
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=53.40 E-value=14 Score=22.09 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVK----DLQNLENQLEMSLRGVRMKKDQILMDEIQELSRK 46 (122)
Q Consensus 5 dL~~Ls~~----eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk 46 (122)
+...++.+ -+..|+..|..|.....--+-..+.++|..+++.
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 44555533 3667888888898888888888888888887765
No 23
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.94 E-value=22 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043067 38 DEIQELSRKGNLIHQENVELY 58 (122)
Q Consensus 38 ~~i~~lkkk~~~l~een~~L~ 58 (122)
+||..+++|...|.+|.-.|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887766664
No 24
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.83 E-value=25 Score=18.56 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 31 KKDQILMDEIQELSRKGNLIHQE 53 (122)
Q Consensus 31 rK~~ll~~~i~~lkkk~~~l~ee 53 (122)
||+.-....|+.+|++-..|+++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHH
Confidence 56666666666666654444443
No 25
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=50.78 E-value=62 Score=22.72 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 10 SVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 10 s~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
|..|...||..-..-..+|+.||.++- ++.....=-++|.+.|+.+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~ 48 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHA 48 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998875543 2222222344555555444
No 26
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=48.06 E-value=86 Score=23.57 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIRQ 66 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~~ 66 (122)
+.|+..|..+=..+..-|.-+--|| .+...+|..+-.|+..|..-...+..+++..++
T Consensus 148 SYSl~~Lkk~~~~i~~~LelL~IRK-~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 148 SYSPSALKSFSQTLVNSLEFLNIQK-NSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778889888888888888777777 788899999999999999999999988877654
No 27
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=47.95 E-value=63 Score=22.03 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQIL 36 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll 36 (122)
+|++||.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 68999999999999999999999988887765
No 28
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=47.87 E-value=60 Score=21.75 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
+++++++..+=.....+-..+.. ...++.++++.+.++...++.....|..++...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777665444332222222 2356777778888888888888777777776543
No 29
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=42.86 E-value=89 Score=22.41 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQIL 36 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll 36 (122)
+|++|+.++|+.+=..|-..+..+=+-|+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 78899999999999999999999998888765
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.94 E-value=79 Score=21.43 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVRMKKDQILMDE--IQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR~rK~~ll~~~--i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+...|+++++.--+.+=+=|.+++..+ ++.++++...+.+++..|..++...
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655555555666655433 3345555555666666665555443
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=40.11 E-value=76 Score=20.73 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQIL 36 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll 36 (122)
+|++||.++|+.+=..|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 46888999999998888888888888877765
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.19 E-value=57 Score=19.03 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 32 KDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 32 K~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+.+-+..+...|+.++..|..|+..|..-+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777788888888888776544
No 33
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=39.15 E-value=45 Score=17.86 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 36 LMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 36 l~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+.+..-..-.|++.|+.+|..|..++
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455578899999999987766
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.29 E-value=59 Score=18.64 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
..+..+...|+.++..|.+++..|...
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666543
No 35
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.89 E-value=19 Score=19.16 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 38 DEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 38 ~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+.|+.+|+|++.++.+...+..++..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887777665543
No 36
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.10 E-value=97 Score=20.76 Aligned_cols=55 Identities=4% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++++++++.+=.....+-..+.. -..++.++++.+.++...++.....|..++..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776664433222112222 22466677777777777777777677666543
No 37
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=35.70 E-value=92 Score=20.36 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 5 ELSGLSVKDLQNLENQLEMSLRGVRMKKDQIL 36 (122)
Q Consensus 5 dL~~Ls~~eL~~LE~~Le~~l~~IR~rK~~ll 36 (122)
+|++|+.++|+.+=..|-..+..+=+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 68899999999999999988888888887765
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.69 E-value=1.3e+02 Score=23.68 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 21 LEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 21 Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+...+...|.+..+.+ +..+..+..+.++|..+...+++.
T Consensus 422 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDW----DMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhh----hhhhhHHHHHHHHhhhhhhhhhhh
Confidence 4445555555544433 455556666666666666666553
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.91 E-value=2e+02 Score=23.08 Aligned_cols=22 Identities=5% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043067 14 LQNLENQLEMSLRGVRMKKDQI 35 (122)
Q Consensus 14 L~~LE~~Le~~l~~IR~rK~~l 35 (122)
|..-|+.+...+..+|...+.+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 4455666666666666665554
No 40
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=31.82 E-value=55 Score=18.78 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=7.6
Q ss_pred CCCCCHHHHHH
Q 043067 6 LSGLSVKDLQN 16 (122)
Q Consensus 6 L~~Ls~~eL~~ 16 (122)
|..||++||..
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 45678888764
No 41
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=31.09 E-value=76 Score=18.02 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L 57 (122)
+-+...+...+++++.|+++|--|
T Consensus 17 eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHhhhccCCch
Confidence 344455566667777777777555
No 42
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.89 E-value=96 Score=19.29 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 33 DQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 33 ~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++.+..+|+.++..+..+.++|..|..-..+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777888888877655443
No 43
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.52 E-value=53 Score=16.09 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043067 48 NLIHQENVELYKKVNL 63 (122)
Q Consensus 48 ~~l~een~~L~~~~~~ 63 (122)
+.+.+.|..|..++..
T Consensus 3 rrlkqknarlkqeiaa 18 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAA 18 (28)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHH
Confidence 3344445555555544
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.26 E-value=1e+02 Score=19.35 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++...|..+++++..+..++..|..+++.
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666555555443
No 45
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.24 E-value=62 Score=23.37 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 37 MDEIQELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 37 ~~~i~~lkkk~~~l~een~~L~~~ 60 (122)
..+|..++.+...|++||..|..+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888999999999988654
No 46
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.24 E-value=1e+02 Score=18.76 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~~~ 63 (122)
..|+..+..|.+++..|...+..
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777766644
No 47
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.80 E-value=71 Score=16.65 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 42 ELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 42 ~lkkk~~~l~een~~L~~~~~~~ 64 (122)
.+..|+..|-.+|..|..++...
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 45566777777777776665443
No 48
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=27.74 E-value=46 Score=16.69 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLR 26 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~ 26 (122)
.|+..||.++..||.
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 578888888877764
No 49
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.60 E-value=1e+02 Score=18.52 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043067 42 ELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 42 ~lkkk~~~l~een~~L~~~~ 61 (122)
.++.....|..+|..|..++
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 50
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.68 E-value=86 Score=17.22 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 043067 39 EIQELSRKGNLIHQE 53 (122)
Q Consensus 39 ~i~~lkkk~~~l~ee 53 (122)
+|..+++|.+.|++.
T Consensus 24 kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 24 QISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555665555543
No 51
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.09 E-value=1.2e+02 Score=21.83 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
.+++.+..|+.+...|+++|..|..+...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888899999999999877644
No 52
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.05 E-value=1.1e+02 Score=18.42 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 28 VRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 28 IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
...||++.|..+.+........++.|...-..++..++
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE 43 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIE 43 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45688888999999999999999988887777775543
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.63 E-value=3.7e+02 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043067 13 DLQNLENQLEMSLRGVR 29 (122)
Q Consensus 13 eL~~LE~~Le~~l~~IR 29 (122)
+|..+|..++.+-.+|+
T Consensus 971 ~le~~~~e~~~~~~~v~ 987 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVL 987 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 54
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=25.48 E-value=1e+02 Score=18.76 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLRGVRMK 31 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~~IR~r 31 (122)
.|+..++..+-+-|...|.+||.|
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr 26 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQR 26 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999965
No 55
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.41 E-value=1.3e+02 Score=18.88 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 36 LMDEIQELSRKGNLIHQENVELY 58 (122)
Q Consensus 36 l~~~i~~lkkk~~~l~een~~L~ 58 (122)
+..+|+.++..+..+.++|..|+
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 56
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=25.05 E-value=1.2e+02 Score=18.34 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEMSLR-GVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~~l~-~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
+||++|++.+=.....+-. .+ ..-..++..++..+.++...++.....|...+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888776433221100 11 11234666666777777777666666665544
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.78 E-value=1.3e+02 Score=18.78 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 20 QLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 20 ~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
.++.++..|-.|+. .+...|+.+.++...+..+-..|...+..
T Consensus 67 ~~~ea~~~L~~~~e-~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIE-TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666663 34677777777777777777777666644
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.16 E-value=1.6e+02 Score=19.39 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQIL---MDEIQELSRKGNLIHQENVELYKKVNLIRQEN 68 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll---~~~i~~lkkk~~~l~een~~L~~~~~~~~~~~ 68 (122)
++|+.--..|..=+...|.|=...- ...|..|++....+...+..|...+..+++.|
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555554333332 23567778888888888888888877766433
No 59
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.15 E-value=87 Score=16.40 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~~~~ 63 (122)
..+..|+..|-.+|..|..++..
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455666666666666655543
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.62 E-value=2.6e+02 Score=21.64 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVEL 57 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L 57 (122)
+++..||..+-..-..|+ .|...++.++.++..|++.-..|
T Consensus 12 ~~~~~~e~~i~~~~~~i~-----~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQ-----ELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444433332 23334444444544444433333
No 61
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.02 E-value=1.4e+02 Score=18.39 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 21 LEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 21 Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
++.+...+-.++ +.+...|+.+.++...++.+-..|...+
T Consensus 63 ~~e~~~~L~~~~-e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKL-ETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555 3445666677776666666666665544
No 62
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.78 E-value=83 Score=15.71 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043067 45 RKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 45 kk~~~l~een~~L~~~~~~ 63 (122)
--...++.+|+.|..++++
T Consensus 6 allasleaenkqlkakvee 24 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355677888888777755
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.30 E-value=1.9e+02 Score=19.40 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQI--LMDEIQELSRKGNLIHQENVELYKKVNLI 64 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~l--l~~~i~~lkkk~~~l~een~~L~~~~~~~ 64 (122)
+||..+....+.-...+-..+.++ +..++...+-+...+..++..|..++...
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555443332 23333333334444444444444444443
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.21 E-value=2.4e+02 Score=20.45 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 043067 10 SVKDLQNLENQLEMSLRGVRMKKDQI--LMDEIQELSRKGNLIHQ 52 (122)
Q Consensus 10 s~~eL~~LE~~Le~~l~~IR~rK~~l--l~~~i~~lkkk~~~l~e 52 (122)
+.+|+..|...++.+-.++...-.++ ++++++.++.....+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666555544442 23444444443333333
No 65
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.73 E-value=2.3e+02 Score=20.75 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 34 QILMDEIQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 34 ~ll~~~i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
+.|..+|+.++..+..+.++|..|+.-...
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777888888777655443
No 66
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.13 E-value=1.3e+02 Score=17.05 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 31 KKDQILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 31 rK~~ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
.|..-|..++++|..|+..|..+-..|+..+....
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999988888887775543
Done!