Query 043067
Match_columns 122
No_of_seqs 139 out of 1246
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 22:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043067.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043067hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 57.0 6.4 0.00047 21.6 3.5 40 8-47 9-52 (56)
2 d1r8ea1 a.6.1.3 (A:3-120) Tran 33.5 43 0.0032 19.7 6.5 10 8-17 61-70 (118)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 33.0 30 0.0022 18.5 3.8 20 41-60 36-55 (61)
4 d2azea1 e.63.1.1 (A:199-346) T 26.2 78 0.0057 20.4 7.7 25 12-36 2-26 (148)
5 d1wu9a1 a.245.1.1 (A:191-249) 22.1 60 0.0044 17.6 5.1 31 35-65 5-35 (59)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 19.7 33 0.0024 20.7 2.4 24 40-63 4-27 (96)
7 d1r8da_ a.6.1.3 (A:) Multidrug 19.6 81 0.0059 18.1 4.4 10 8-17 59-68 (109)
8 d1q08a_ a.6.1.3 (A:) Transcrip 19.3 81 0.0059 18.0 6.6 48 8-59 16-67 (94)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 18.6 89 0.0065 18.2 6.9 40 21-61 63-102 (107)
10 d1nkpb_ a.38.1.1 (B:) Max prot 18.1 80 0.0058 17.5 5.9 9 50-58 66-74 (83)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=56.97 E-value=6.4 Score=21.64 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKD----LQNLENQLEMSLRGVRMKKDQILMDEIQELSRKG 47 (122)
Q Consensus 8 ~Ls~~e----L~~LE~~Le~~l~~IR~rK~~ll~~~i~~lkkk~ 47 (122)
++|.++ +..||++|..+.....--|--.+.++|..+++..
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 455555 7889999999999888888888888888887753
No 2
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=33.55 E-value=43 Score=19.74 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=5.9
Q ss_pred CCCHHHHHHH
Q 043067 8 GLSVKDLQNL 17 (122)
Q Consensus 8 ~Ls~~eL~~L 17 (122)
++|+++++.+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4666666554
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.02 E-value=30 Score=18.52 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043067 41 QELSRKGNLIHQENVELYKK 60 (122)
Q Consensus 41 ~~lkkk~~~l~een~~L~~~ 60 (122)
..|++++..|.+++..|+..
T Consensus 36 ~~Lq~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 36 KYLQQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666544
No 4
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.20 E-value=78 Score=20.35 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 12 KDLQNLENQLEMSLRGVRMKKDQIL 36 (122)
Q Consensus 12 ~eL~~LE~~Le~~l~~IR~rK~~ll 36 (122)
.|...||........+|+.|+.++-
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~Lq 26 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQ 26 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999998886643
No 5
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09 E-value=60 Score=17.61 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 35 ILMDEIQELSRKGNLIHQENVELYKKVNLIR 65 (122)
Q Consensus 35 ll~~~i~~lkkk~~~l~een~~L~~~~~~~~ 65 (122)
-+..++..+|-.+..++.|...-..|+..++
T Consensus 5 ~L~~ei~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 5 ELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999988888886654
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=19.74 E-value=33 Score=20.68 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 40 IQELSRKGNLIHQENVELYKKVNL 63 (122)
Q Consensus 40 i~~lkkk~~~l~een~~L~~~~~~ 63 (122)
++.|-++...|+-||+.|.+++..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888899999999988754
No 7
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=19.59 E-value=81 Score=18.13 Aligned_cols=10 Identities=10% Similarity=0.713 Sum_probs=6.1
Q ss_pred CCCHHHHHHH
Q 043067 8 GLSVKDLQNL 17 (122)
Q Consensus 8 ~Ls~~eL~~L 17 (122)
++++++++.+
T Consensus 59 G~sl~eI~~~ 68 (109)
T d1r8da_ 59 GFRLDEIKEM 68 (109)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4666666654
No 8
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=19.27 E-value=81 Score=18.00 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 8 GLSVKDLQNLENQLEM----SLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYK 59 (122)
Q Consensus 8 ~Ls~~eL~~LE~~Le~----~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~ 59 (122)
++|++|++.|=.-... +-..|+ .++..++..+..|+..|+.--..|..
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~----~l~~~kl~~i~~kI~~L~~l~~~L~~ 67 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESK----GIVQERLQEVEARIAELQSMQRSLQR 67 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777766432211 122333 45677777888887777665555543
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.56 E-value=89 Score=18.16 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043067 21 LEMSLRGVRMKKDQILMDEIQELSRKGNLIHQENVELYKKV 61 (122)
Q Consensus 21 Le~~l~~IR~rK~~ll~~~i~~lkkk~~~l~een~~L~~~~ 61 (122)
.+.+...+..++ ..|..+|+.+.+.+..+.++-..+..++
T Consensus 63 ~~e~~~~l~~~~-e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 63 KDELTEELQEKL-ETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 5556666777777666666666666554
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.15 E-value=80 Score=17.47 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 043067 50 IHQENVELY 58 (122)
Q Consensus 50 l~een~~L~ 58 (122)
+..++..|.
T Consensus 66 l~~~~~~L~ 74 (83)
T d1nkpb_ 66 LKRQNALLE 74 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!