BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043068
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI--LVE-------NGELDRAILLLKQMP 393
K G EA+ L E R G++ + + +N + + L E N L R + KQM
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 394 QMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNV 453
+PN ++ T L +AK + D+V +M G Y L G+C +G+
Sbjct: 98 VDKVVPNEATF-TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 454 ENVMQIAHEM 463
+ ++ M
Sbjct: 157 DKAYEVDAHM 166
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 136 RGNVKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAE---------EFFHQI 184
+G+V A+ + +A++ NG L Y YN LL V + + + F Q+
Sbjct: 39 KGDVLEALRLYDEARR--NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 185 VKENVVPPDVSTYTTMIRGYCKMGMIENA---KKVFDVMTVKPNLLAYNTMINGFCKKGE 241
+ + VVP + +T+T R E A K ++P L +Y + GFC+KG+
Sbjct: 97 IVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 242 LEEA 245
++A
Sbjct: 156 ADKA 159
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM---------LMAKMR 288
KKG++ EA + +E G + ++ YN ++Y + E+ + +M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 289 LNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD 348
++ N +T + + + A ++ + + P ++SY + GFC+ G +D
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 349 EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM 392
+A + M + P A+ ++ ++ D+ L+++
Sbjct: 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 136 RGNVKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAE---------EFFHQI 184
+G+V A+ + +A++ NG L Y YN LL V + + + F Q
Sbjct: 39 KGDVLEALRLYDEARR--NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 185 VKENVVPPDVSTYTTMIRGYCKMGMIENA---KKVFDVMTVKPNLLAYNTMINGFCKKGE 241
+ + VVP + +T+T R E A K ++P L +Y + GFC+KG+
Sbjct: 97 IVDKVVP-NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 242 LEEA 245
++A
Sbjct: 156 ADKA 159
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR-LNGFK--- 293
KKG++ EA + +E G + ++ YN ++Y + E+ R + FK
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97
Query: 294 -DNVSTHKSMLK--GLCVVGKFD--QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD 348
D V +++ V K D A ++ + P ++SY + GFC+ G +D
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 349 EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM 392
+A + + P A+ ++ + D+ L+++
Sbjct: 158 KAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRL 201
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 204 YCKMGMIENAKKVFD-VMTVKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE 261
Y + G+I+ A + + ++P+ AY + N +KG + EA+ C N + R C +
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHA 305
Query: 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN 321
+ N + G ++EA L K L F + + H ++ L GK +A+ + +
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKA-LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 322 VM 323
+
Sbjct: 365 AI 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,687,556
Number of Sequences: 62578
Number of extensions: 566995
Number of successful extensions: 1107
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 14
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)