Query 043068
Match_columns 526
No_of_seqs 676 out of 3761
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-61 5.4E-66 506.7 60.7 459 56-522 374-848 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-58 3.3E-63 485.7 57.3 452 56-521 410-915 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-58 3.2E-63 483.2 49.4 409 54-472 89-529 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.7E-56 3.8E-61 478.6 49.4 463 53-521 153-773 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 7.2E-55 1.6E-59 466.1 47.7 414 52-478 51-494 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3E-52 6.4E-57 435.8 43.4 426 54-521 160-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-26 3.2E-31 252.6 51.8 406 56-478 367-811 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-26 1.6E-30 247.1 53.9 399 57-473 470-873 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 4.3E-25 9.4E-30 207.1 38.4 438 56-515 52-526 (966)
10 PRK11788 tetratricopeptide rep 99.9 6.2E-22 1.4E-26 194.5 35.8 303 130-438 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 1E-20 2.3E-25 208.1 47.6 394 59-472 276-706 (1157)
12 PRK11788 tetratricopeptide rep 99.9 3.6E-21 7.9E-26 189.0 36.2 297 164-469 41-350 (389)
13 PRK15174 Vi polysaccharide exp 99.9 1.9E-19 4.1E-24 185.7 49.6 412 96-517 46-479 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 5.7E-21 1.2E-25 179.7 31.6 375 56-447 120-500 (966)
15 PRK10049 pgaA outer membrane p 99.9 4.1E-19 8.9E-24 187.1 49.4 410 53-476 13-466 (765)
16 TIGR00990 3a0801s09 mitochondr 99.9 6.9E-19 1.5E-23 182.1 48.8 389 59-469 134-574 (615)
17 PRK11447 cellulose synthase su 99.9 2.4E-18 5.3E-23 189.5 53.4 405 58-475 118-675 (1157)
18 PRK15174 Vi polysaccharide exp 99.9 3.3E-19 7.1E-24 183.9 43.2 335 126-471 45-386 (656)
19 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-18 1.4E-22 174.8 44.0 389 58-467 166-598 (615)
20 PRK14574 hmsH outer membrane p 99.9 9.8E-17 2.1E-21 166.0 47.1 405 59-476 41-523 (822)
21 PRK10049 pgaA outer membrane p 99.9 1.2E-16 2.5E-21 168.6 47.2 370 94-473 17-429 (765)
22 PRK09782 bacteriophage N4 rece 99.8 2.6E-15 5.7E-20 158.7 50.3 175 65-252 57-273 (987)
23 PRK09782 bacteriophage N4 rece 99.8 2.9E-15 6.2E-20 158.4 49.0 399 59-476 189-716 (987)
24 PRK14574 hmsH outer membrane p 99.8 2.5E-15 5.4E-20 155.7 47.5 374 96-474 38-487 (822)
25 KOG2002 TPR-containing nuclear 99.7 1.4E-13 2.9E-18 137.2 41.6 415 58-486 313-765 (1018)
26 KOG4422 Uncharacterized conser 99.7 1.7E-13 3.8E-18 124.4 35.1 347 114-468 198-592 (625)
27 COG2956 Predicted N-acetylgluc 99.7 3.1E-14 6.8E-19 124.8 26.3 314 171-493 48-374 (389)
28 KOG2076 RNA polymerase III tra 99.7 3.7E-13 8.1E-18 133.3 36.4 132 331-464 414-553 (895)
29 KOG2002 TPR-containing nuclear 99.7 3.7E-12 8E-17 127.2 41.4 395 68-478 146-571 (1018)
30 KOG2003 TPR repeat-containing 99.7 6.3E-13 1.4E-17 121.6 33.2 200 274-480 503-703 (840)
31 KOG1915 Cell cycle control pro 99.7 4.8E-12 1E-16 116.6 38.3 394 65-476 86-546 (677)
32 PRK10747 putative protoheme IX 99.7 4.2E-13 9.1E-18 130.8 33.8 284 171-466 97-390 (398)
33 KOG2003 TPR repeat-containing 99.7 3.2E-13 7E-18 123.5 29.5 208 239-453 503-710 (840)
34 TIGR00540 hemY_coli hemY prote 99.7 6.3E-13 1.4E-17 130.3 33.5 288 169-465 95-398 (409)
35 PRK10747 putative protoheme IX 99.7 1.3E-12 2.8E-17 127.5 35.2 249 169-429 129-388 (398)
36 KOG0547 Translocase of outer m 99.7 2.2E-12 4.8E-17 119.3 34.2 388 61-468 124-568 (606)
37 PF13429 TPR_15: Tetratricopep 99.6 1.2E-15 2.6E-20 142.2 12.8 257 130-392 15-274 (280)
38 KOG0495 HAT repeat protein [RN 99.6 2.6E-11 5.6E-16 116.1 39.5 359 95-468 519-882 (913)
39 KOG4422 Uncharacterized conser 99.6 4.7E-12 1E-16 115.3 32.6 335 92-434 207-593 (625)
40 PF13429 TPR_15: Tetratricopep 99.6 3E-15 6.5E-20 139.4 12.6 255 97-359 13-276 (280)
41 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.5E-16 122.9 37.2 357 60-429 147-553 (895)
42 TIGR00540 hemY_coli hemY prote 99.6 3.9E-12 8.5E-17 124.7 33.8 289 135-430 96-398 (409)
43 COG2956 Predicted N-acetylgluc 99.6 6.6E-12 1.4E-16 110.4 30.6 290 136-431 48-347 (389)
44 KOG1155 Anaphase-promoting com 99.6 2.1E-11 4.5E-16 112.3 34.1 290 166-466 235-536 (559)
45 KOG1155 Anaphase-promoting com 99.6 6.3E-11 1.4E-15 109.2 36.9 374 60-467 172-554 (559)
46 KOG1126 DNA-binding cell divis 99.6 8.8E-13 1.9E-17 126.8 24.4 285 138-435 334-624 (638)
47 KOG1126 DNA-binding cell divis 99.6 1E-12 2.2E-17 126.4 23.2 288 172-472 333-626 (638)
48 KOG0495 HAT repeat protein [RN 99.6 2.4E-09 5.1E-14 103.0 45.0 374 94-476 442-856 (913)
49 COG3071 HemY Uncharacterized e 99.5 7.3E-11 1.6E-15 107.2 31.3 281 171-464 97-388 (400)
50 COG3071 HemY Uncharacterized e 99.5 1E-09 2.2E-14 99.8 34.8 285 136-431 97-390 (400)
51 KOG1915 Cell cycle control pro 99.4 6.2E-08 1.3E-12 90.1 43.6 366 94-468 75-502 (677)
52 TIGR02521 type_IV_pilW type IV 99.4 1.3E-10 2.7E-15 105.3 26.3 191 125-320 33-227 (234)
53 PRK12370 invasion protein regu 99.4 9.2E-11 2E-15 119.6 27.7 249 172-432 275-536 (553)
54 KOG2047 mRNA splicing factor [ 99.4 2.5E-08 5.5E-13 95.9 41.1 405 94-520 104-583 (835)
55 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 104.2 26.4 197 158-358 31-230 (234)
56 PRK12370 invasion protein regu 99.4 4.4E-10 9.6E-15 114.6 30.4 267 191-468 253-537 (553)
57 KOG1173 Anaphase-promoting com 99.4 5.4E-10 1.2E-14 105.7 27.4 276 125-410 246-531 (611)
58 KOG0547 Translocase of outer m 99.4 2E-09 4.4E-14 100.1 29.4 195 305-514 335-531 (606)
59 KOG2047 mRNA splicing factor [ 99.4 8.3E-08 1.8E-12 92.5 39.7 223 239-464 360-613 (835)
60 KOG1129 TPR repeat-containing 99.4 2.4E-10 5.1E-15 100.8 20.9 235 229-470 226-462 (478)
61 KOG1129 TPR repeat-containing 99.3 1.1E-10 2.3E-15 102.9 17.7 228 127-360 227-458 (478)
62 PF12569 NARP1: NMDA receptor- 99.3 8.4E-09 1.8E-13 101.8 32.4 292 130-430 11-333 (517)
63 KOG1156 N-terminal acetyltrans 99.3 3.3E-07 7.2E-12 88.7 41.7 388 63-468 52-470 (700)
64 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.2E-16 82.8 6.5 50 224-273 1-50 (50)
65 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.5E-12 86.9 34.8 293 171-471 209-505 (564)
66 KOG1173 Anaphase-promoting com 99.3 3.6E-08 7.8E-13 93.7 32.6 287 191-483 241-535 (611)
67 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.6E-14 104.7 25.1 234 159-392 200-476 (508)
68 KOG1840 Kinesin light chain [C 99.3 2.4E-09 5.1E-14 104.4 24.9 234 125-358 201-477 (508)
69 KOG4318 Bicoid mRNA stability 99.3 5.3E-10 1.2E-14 110.9 20.0 248 145-413 12-283 (1088)
70 PF12569 NARP1: NMDA receptor- 99.3 4.1E-08 8.9E-13 97.0 33.2 259 200-468 10-293 (517)
71 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-11 3.4E-16 80.5 6.3 49 329-377 1-49 (50)
72 PRK11189 lipoprotein NlpI; Pro 99.2 9.2E-09 2E-13 96.1 26.7 220 239-468 39-267 (296)
73 KOG1174 Anaphase-promoting com 99.2 2.2E-07 4.8E-12 85.1 33.4 271 154-434 228-503 (564)
74 cd05804 StaR_like StaR_like; a 99.2 1.5E-07 3.2E-12 91.3 34.9 195 125-323 8-213 (355)
75 KOG2376 Signal recognition par 99.2 1E-06 2.3E-11 84.4 37.0 122 56-188 14-140 (652)
76 PRK11189 lipoprotein NlpI; Pro 99.2 2.7E-08 5.9E-13 92.9 26.5 147 138-288 41-192 (296)
77 COG3063 PilF Tfp pilus assembl 99.2 3E-08 6.5E-13 83.9 23.6 208 263-476 37-246 (250)
78 COG3063 PilF Tfp pilus assembl 99.2 2.8E-08 6.2E-13 84.0 23.5 195 126-325 38-236 (250)
79 KOG3785 Uncharacterized conser 99.2 8.5E-07 1.8E-11 79.7 33.1 362 58-440 63-497 (557)
80 KOG4162 Predicted calmodulin-b 99.2 7.1E-07 1.5E-11 88.2 35.6 376 88-471 319-788 (799)
81 cd05804 StaR_like StaR_like; a 99.1 3.4E-07 7.4E-12 88.8 33.3 305 158-467 6-337 (355)
82 KOG4318 Bicoid mRNA stability 99.1 2.9E-08 6.3E-13 98.9 23.6 241 118-381 20-286 (1088)
83 KOG1156 N-terminal acetyltrans 99.1 2.1E-06 4.5E-11 83.3 35.1 384 65-468 20-436 (700)
84 PRK04841 transcriptional regul 99.1 1.6E-06 3.6E-11 95.0 39.4 369 99-468 348-762 (903)
85 KOG4162 Predicted calmodulin-b 99.1 2.7E-06 5.8E-11 84.2 35.3 382 122-524 322-794 (799)
86 KOG0624 dsRNA-activated protei 99.1 1.2E-06 2.6E-11 78.5 29.7 193 271-471 165-375 (504)
87 KOG2376 Signal recognition par 99.1 4.6E-06 1E-10 80.1 35.5 361 99-471 19-492 (652)
88 KOG0548 Molecular co-chaperone 99.1 2.1E-06 4.5E-11 81.6 32.3 357 61-431 11-455 (539)
89 KOG0624 dsRNA-activated protei 99.0 3.2E-06 7E-11 75.7 31.4 293 57-360 43-370 (504)
90 KOG4340 Uncharacterized conser 99.0 1.9E-07 4E-12 81.9 23.2 290 161-462 13-335 (459)
91 KOG4340 Uncharacterized conser 99.0 4E-07 8.7E-12 79.8 25.3 324 95-429 13-373 (459)
92 PRK04841 transcriptional regul 99.0 1E-05 2.2E-10 88.9 40.0 333 98-432 380-761 (903)
93 KOG3785 Uncharacterized conser 99.0 9E-06 2E-10 73.3 31.2 116 130-254 64-179 (557)
94 KOG0548 Molecular co-chaperone 99.0 3.8E-06 8.3E-11 79.9 30.1 348 97-468 7-423 (539)
95 PF04733 Coatomer_E: Coatomer 99.0 5.5E-08 1.2E-12 89.6 17.6 48 346-394 182-229 (290)
96 PF04733 Coatomer_E: Coatomer 99.0 8.2E-08 1.8E-12 88.5 18.6 247 131-394 9-264 (290)
97 KOG3617 WD40 and TPR repeat-co 98.9 1.5E-05 3.3E-10 79.4 33.5 364 97-476 831-1368(1416)
98 PLN02789 farnesyltranstransfer 98.9 3.4E-06 7.3E-11 78.9 26.1 211 127-343 41-267 (320)
99 PLN02789 farnesyltranstransfer 98.9 4.3E-06 9.3E-11 78.2 26.7 228 231-464 42-300 (320)
100 KOG1127 TPR repeat-containing 98.8 1.6E-05 3.5E-10 80.9 31.0 385 65-462 471-909 (1238)
101 KOG3617 WD40 and TPR repeat-co 98.8 7.1E-07 1.5E-11 88.5 19.6 304 168-526 738-1059(1416)
102 KOG1125 TPR repeat-containing 98.8 9.9E-07 2.1E-11 84.5 19.9 253 130-389 292-565 (579)
103 KOG0985 Vesicle coat protein c 98.8 0.00024 5.3E-09 72.8 37.1 257 57-356 989-1245(1666)
104 KOG3616 Selective LIM binding 98.8 4.4E-06 9.5E-11 82.1 24.1 317 97-461 594-932 (1636)
105 KOG1070 rRNA processing protei 98.8 5.4E-06 1.2E-10 87.1 25.6 231 191-426 1455-1695(1710)
106 KOG1125 TPR repeat-containing 98.8 1.1E-06 2.5E-11 84.1 19.1 254 164-425 291-565 (579)
107 KOG1070 rRNA processing protei 98.7 6E-06 1.3E-10 86.7 25.6 245 212-464 1443-1698(1710)
108 KOG1127 TPR repeat-containing 98.7 1.9E-05 4E-10 80.5 28.3 390 56-461 496-947 (1238)
109 KOG3616 Selective LIM binding 98.7 2.7E-05 5.8E-10 76.8 28.4 338 65-463 544-908 (1636)
110 KOG1914 mRNA cleavage and poly 98.7 0.00031 6.6E-09 67.3 34.3 153 312-468 347-503 (656)
111 PRK14720 transcript cleavage f 98.7 2.1E-05 4.4E-10 82.1 27.4 58 228-287 118-175 (906)
112 KOG1128 Uncharacterized conser 98.7 1.2E-05 2.5E-10 79.4 23.2 221 228-471 400-621 (777)
113 TIGR03302 OM_YfiO outer membra 98.6 4.2E-06 9.1E-11 75.8 19.0 190 125-360 35-232 (235)
114 PF12854 PPR_1: PPR repeat 98.6 6.8E-08 1.5E-12 56.7 4.6 32 361-392 2-33 (34)
115 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 69.4 20.7 123 265-390 104-226 (257)
116 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 57.1 4.2 32 432-463 2-33 (34)
117 PRK10370 formate-dependent nit 98.6 1.6E-05 3.4E-10 69.3 21.3 154 302-471 22-178 (198)
118 TIGR03302 OM_YfiO outer membra 98.6 7.6E-06 1.6E-10 74.1 20.3 187 260-468 32-234 (235)
119 KOG3081 Vesicle coat complex C 98.6 0.00013 2.9E-09 63.5 25.7 248 167-430 17-270 (299)
120 PRK10370 formate-dependent nit 98.6 1.1E-05 2.5E-10 70.2 19.8 155 129-299 22-181 (198)
121 KOG0985 Vesicle coat protein c 98.6 0.00028 6E-09 72.3 31.4 306 52-392 898-1246(1666)
122 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.8E-10 69.7 19.4 120 196-317 102-223 (257)
123 PRK15179 Vi polysaccharide bio 98.6 3.6E-05 7.7E-10 79.5 26.1 141 328-473 83-224 (694)
124 KOG1128 Uncharacterized conser 98.6 2.9E-06 6.3E-11 83.5 17.1 215 126-359 401-615 (777)
125 PRK15359 type III secretion sy 98.6 4.1E-06 8.9E-11 68.9 15.5 118 351-476 13-131 (144)
126 PRK15179 Vi polysaccharide bio 98.6 4.5E-05 9.8E-10 78.8 26.0 205 129-344 58-268 (694)
127 PRK15359 type III secretion sy 98.6 1.9E-06 4.1E-11 70.9 13.0 97 121-220 22-118 (144)
128 KOG1914 mRNA cleavage and poly 98.5 0.00098 2.1E-08 64.0 33.2 371 90-468 18-466 (656)
129 KOG3081 Vesicle coat complex C 98.5 6.8E-05 1.5E-09 65.3 21.7 119 201-326 115-237 (299)
130 PRK14720 transcript cleavage f 98.5 0.00014 3.1E-09 76.0 27.3 234 56-342 35-268 (906)
131 COG4783 Putative Zn-dependent 98.4 0.00019 4.2E-09 68.0 24.5 195 107-325 252-454 (484)
132 COG4783 Putative Zn-dependent 98.4 0.00028 6.1E-09 66.9 25.0 142 129-291 312-455 (484)
133 KOG2053 Mitochondrial inherita 98.4 0.0034 7.4E-08 64.1 41.1 419 65-512 22-540 (932)
134 KOG2053 Mitochondrial inherita 98.4 0.0035 7.6E-08 64.0 32.2 222 134-361 20-256 (932)
135 KOG3060 Uncharacterized conser 98.3 0.0009 2E-08 58.1 22.9 187 240-431 26-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.3 3.4E-05 7.4E-10 63.0 14.2 95 159-255 18-114 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.6E-05 1.2E-09 72.2 17.4 118 100-220 177-294 (395)
138 TIGR02552 LcrH_SycD type III s 98.3 5.9E-05 1.3E-09 61.5 15.6 92 266-359 22-113 (135)
139 KOG3060 Uncharacterized conser 98.3 0.00079 1.7E-08 58.4 22.3 186 137-326 26-221 (289)
140 PF09976 TPR_21: Tetratricopep 98.2 0.0002 4.4E-09 59.1 16.1 88 302-391 54-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.9E-09 69.7 16.3 124 229-358 172-295 (395)
142 TIGR00756 PPR pentatricopeptid 98.1 7.9E-06 1.7E-10 48.6 4.6 33 228-260 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00043 9.4E-09 57.1 16.3 123 126-251 15-143 (145)
144 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 48.2 4.2 33 333-365 2-34 (35)
145 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 47.7 4.1 33 227-259 2-34 (34)
146 PF10037 MRP-S27: Mitochondria 97.9 0.00023 5E-09 68.4 13.7 119 225-343 65-185 (429)
147 PRK15363 pathogenicity island 97.9 0.00024 5.3E-09 57.6 11.6 101 368-471 37-137 (157)
148 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5.1E-10 46.2 4.4 32 333-364 3-34 (34)
149 PF10037 MRP-S27: Mitochondria 97.9 0.00022 4.8E-09 68.5 13.2 122 291-412 61-184 (429)
150 cd00189 TPR Tetratricopeptide 97.9 0.00022 4.7E-09 53.5 10.3 88 129-219 6-93 (100)
151 cd00189 TPR Tetratricopeptide 97.8 0.00053 1.2E-08 51.3 11.9 91 231-323 5-95 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00065 1.4E-08 53.8 12.5 27 229-255 79-105 (119)
153 PF14938 SNAP: Soluble NSF att 97.8 0.0037 7.9E-08 58.1 18.8 76 201-289 101-183 (282)
154 PRK15363 pathogenicity island 97.8 0.0013 2.8E-08 53.5 13.5 98 225-324 34-131 (157)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00076 1.6E-08 53.4 12.4 101 368-471 4-110 (119)
156 KOG2041 WD40 repeat protein [G 97.8 0.052 1.1E-06 54.2 26.5 132 99-251 767-903 (1189)
157 KOG0550 Molecular chaperone (D 97.7 0.0092 2E-07 55.7 20.2 256 61-325 58-350 (486)
158 PF12895 Apc3: Anaphase-promot 97.7 6.7E-05 1.5E-09 55.3 5.5 79 137-218 3-82 (84)
159 PF01535 PPR: PPR repeat; Int 97.7 3.9E-05 8.5E-10 44.1 3.1 29 228-256 2-30 (31)
160 PLN03088 SGT1, suppressor of 97.7 0.00079 1.7E-08 64.7 13.9 99 374-476 10-109 (356)
161 PF14938 SNAP: Soluble NSF att 97.7 0.0068 1.5E-07 56.4 19.7 89 305-394 123-224 (282)
162 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 61.4 14.3 129 228-359 3-135 (280)
163 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.7E-08 61.0 14.0 128 125-255 3-136 (280)
164 PLN03088 SGT1, suppressor of 97.7 0.00094 2E-08 64.1 13.6 87 131-220 10-96 (356)
165 PF08579 RPM2: Mitochondrial r 97.7 0.0009 1.9E-08 50.4 10.2 77 373-449 32-116 (120)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3.1E-09 53.5 6.1 81 171-251 2-83 (84)
167 PF01535 PPR: PPR repeat; Int 97.6 5.7E-05 1.2E-09 43.4 3.1 29 439-467 2-30 (31)
168 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.7E-08 49.7 10.7 38 305-342 34-72 (120)
169 KOG0550 Molecular chaperone (D 97.6 0.045 9.7E-07 51.3 22.7 163 224-395 166-350 (486)
170 PF13432 TPR_16: Tetratricopep 97.6 0.00027 6E-09 49.0 6.9 60 410-471 6-65 (65)
171 PRK02603 photosystem I assembl 97.6 0.0043 9.3E-08 52.9 15.5 86 228-314 37-124 (172)
172 KOG2041 WD40 repeat protein [G 97.6 0.1 2.2E-06 52.3 29.1 328 107-476 678-1060(1189)
173 PRK02603 photosystem I assembl 97.6 0.0057 1.2E-07 52.2 15.6 92 261-353 35-128 (172)
174 PRK10153 DNA-binding transcrip 97.6 0.0045 9.7E-08 62.3 17.0 132 155-290 334-482 (517)
175 PF14559 TPR_19: Tetratricopep 97.6 0.00023 5E-09 49.9 5.8 59 415-474 4-62 (68)
176 CHL00033 ycf3 photosystem I as 97.5 0.0018 3.9E-08 55.0 12.4 79 125-205 37-117 (168)
177 KOG2796 Uncharacterized conser 97.5 0.0088 1.9E-07 52.3 15.9 131 229-360 180-315 (366)
178 PRK10866 outer membrane biogen 97.5 0.058 1.2E-06 48.7 22.2 59 129-188 38-99 (243)
179 KOG0553 TPR repeat-containing 97.5 0.0011 2.4E-08 59.2 10.6 97 132-231 90-187 (304)
180 PRK10866 outer membrane biogen 97.5 0.038 8.3E-07 49.8 20.8 175 269-465 40-240 (243)
181 PF14559 TPR_19: Tetratricopep 97.5 0.0006 1.3E-08 47.8 7.4 49 170-220 3-51 (68)
182 KOG1130 Predicted G-alpha GTPa 97.5 0.0017 3.8E-08 60.2 11.6 131 263-393 197-342 (639)
183 PRK10153 DNA-binding transcrip 97.4 0.01 2.2E-07 59.7 17.8 62 331-394 420-481 (517)
184 KOG1130 Predicted G-alpha GTPa 97.4 0.0022 4.8E-08 59.5 11.6 133 297-430 196-343 (639)
185 PF06239 ECSIT: Evolutionarily 97.4 0.0036 7.8E-08 53.5 12.0 100 293-411 44-148 (228)
186 PF07079 DUF1347: Protein of u 97.4 0.13 2.8E-06 49.1 36.3 120 343-465 391-523 (549)
187 CHL00033 ycf3 photosystem I as 97.4 0.0066 1.4E-07 51.5 14.0 62 228-289 37-100 (168)
188 COG4700 Uncharacterized protei 97.4 0.056 1.2E-06 45.0 17.9 126 258-385 86-212 (251)
189 KOG0553 TPR repeat-containing 97.4 0.0016 3.5E-08 58.1 10.0 83 65-153 94-179 (304)
190 PF06239 ECSIT: Evolutionarily 97.4 0.0052 1.1E-07 52.6 12.4 105 223-346 44-153 (228)
191 COG3898 Uncharacterized membra 97.3 0.14 2.9E-06 47.9 30.4 283 136-431 97-392 (531)
192 PF13414 TPR_11: TPR repeat; P 97.3 0.0013 2.8E-08 46.2 7.3 66 401-468 3-69 (69)
193 PF12688 TPR_5: Tetratrico pep 97.3 0.023 5E-07 44.6 14.7 56 234-289 9-66 (120)
194 PF04840 Vps16_C: Vps16, C-ter 97.3 0.16 3.4E-06 47.7 31.7 109 298-427 179-287 (319)
195 PF12688 TPR_5: Tetratrico pep 97.3 0.01 2.2E-07 46.6 12.4 89 129-219 7-100 (120)
196 PF13432 TPR_16: Tetratricopep 97.3 0.0015 3.1E-08 45.3 6.9 59 129-188 3-61 (65)
197 KOG2796 Uncharacterized conser 97.2 0.02 4.3E-07 50.3 14.5 161 129-300 155-323 (366)
198 KOG2280 Vacuolar assembly/sort 97.2 0.36 7.7E-06 49.1 26.0 310 128-460 442-793 (829)
199 PF13371 TPR_9: Tetratricopept 97.2 0.0024 5.3E-08 45.3 7.4 62 410-473 4-65 (73)
200 COG3898 Uncharacterized membra 97.1 0.23 5.1E-06 46.4 29.5 304 66-395 67-392 (531)
201 COG4235 Cytochrome c biogenesi 97.1 0.038 8.2E-07 49.9 15.9 108 363-472 153-262 (287)
202 PF04840 Vps16_C: Vps16, C-ter 97.1 0.26 5.6E-06 46.3 28.1 108 333-461 179-286 (319)
203 COG4235 Cytochrome c biogenesi 97.1 0.044 9.5E-07 49.5 16.0 99 260-360 155-256 (287)
204 PF13525 YfiO: Outer membrane 97.1 0.042 9.2E-07 48.2 16.0 62 127-188 9-72 (203)
205 PF13414 TPR_11: TPR repeat; P 97.1 0.0037 8.1E-08 43.8 7.6 13 238-250 15-27 (69)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.38 8.1E-06 45.9 32.9 134 332-470 398-535 (660)
207 PF13525 YfiO: Outer membrane 96.9 0.16 3.4E-06 44.6 18.3 42 415-456 154-197 (203)
208 PF03704 BTAD: Bacterial trans 96.9 0.055 1.2E-06 44.6 14.6 68 300-368 66-138 (146)
209 PF13281 DUF4071: Domain of un 96.9 0.22 4.8E-06 47.3 19.5 168 122-290 140-334 (374)
210 PRK10803 tol-pal system protei 96.9 0.022 4.8E-07 51.8 12.6 94 160-255 145-246 (263)
211 COG4700 Uncharacterized protei 96.9 0.21 4.6E-06 41.6 18.4 99 294-394 87-188 (251)
212 KOG1538 Uncharacterized conser 96.9 0.25 5.5E-06 49.1 19.9 101 330-466 746-846 (1081)
213 PF03704 BTAD: Bacterial trans 96.8 0.029 6.2E-07 46.3 12.2 55 163-219 67-121 (146)
214 PRK10803 tol-pal system protei 96.8 0.036 7.7E-07 50.5 13.6 98 228-325 145-246 (263)
215 PF04184 ST7: ST7 protein; In 96.8 0.35 7.5E-06 47.0 19.7 231 232-482 174-430 (539)
216 KOG1585 Protein required for f 96.8 0.063 1.4E-06 46.7 13.4 87 197-284 153-250 (308)
217 PF13371 TPR_9: Tetratricopept 96.7 0.014 3.1E-07 41.3 8.1 57 131-188 3-59 (73)
218 PF13281 DUF4071: Domain of un 96.7 0.45 9.9E-06 45.2 19.9 73 199-271 146-227 (374)
219 PRK15331 chaperone protein Sic 96.7 0.072 1.6E-06 43.8 12.7 91 373-466 44-134 (165)
220 PF12921 ATP13: Mitochondrial 96.6 0.039 8.5E-07 43.8 10.5 51 257-307 48-99 (126)
221 PF09205 DUF1955: Domain of un 96.5 0.26 5.6E-06 38.6 13.9 62 229-291 89-150 (161)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.86 1.9E-05 43.6 20.3 218 94-325 304-531 (660)
223 PF13424 TPR_12: Tetratricopep 96.4 0.0092 2E-07 43.0 5.7 24 264-287 49-72 (78)
224 KOG2280 Vacuolar assembly/sort 96.3 1.5 3.3E-05 44.8 25.5 115 293-427 681-795 (829)
225 PF08631 SPO22: Meiosis protei 96.2 1 2.2E-05 41.7 24.3 59 160-220 86-147 (278)
226 KOG1538 Uncharacterized conser 96.2 0.19 4.2E-06 49.9 14.4 217 54-288 600-844 (1081)
227 PF13424 TPR_12: Tetratricopep 96.1 0.02 4.3E-07 41.2 6.1 61 263-323 7-73 (78)
228 PF13428 TPR_14: Tetratricopep 96.1 0.01 2.2E-07 37.1 4.0 40 438-477 2-41 (44)
229 COG3118 Thioredoxin domain-con 96.1 0.99 2.2E-05 40.9 17.6 52 133-185 144-195 (304)
230 PRK15331 chaperone protein Sic 96.1 0.14 3.1E-06 42.1 11.4 91 232-324 43-133 (165)
231 PF04053 Coatomer_WDAD: Coatom 96.1 0.08 1.7E-06 52.1 11.9 102 101-220 327-428 (443)
232 PF04053 Coatomer_WDAD: Coatom 96.1 0.35 7.5E-06 47.8 16.1 130 229-391 298-427 (443)
233 PF10300 DUF3808: Protein of u 96.0 0.56 1.2E-05 47.0 17.5 45 173-219 248-292 (468)
234 PF10300 DUF3808: Protein of u 95.9 1.7 3.6E-05 43.7 20.6 176 300-479 192-393 (468)
235 KOG2114 Vacuolar assembly/sort 95.9 1 2.3E-05 46.5 18.6 252 197-472 337-596 (933)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.17 3.6E-06 48.9 12.5 62 157-220 74-138 (453)
237 COG4105 ComL DNA uptake lipopr 95.8 1.2 2.7E-05 39.5 20.3 188 261-470 35-237 (254)
238 KOG0543 FKBP-type peptidyl-pro 95.8 0.12 2.7E-06 48.6 11.0 93 160-254 259-354 (397)
239 KOG0543 FKBP-type peptidyl-pro 95.8 0.25 5.3E-06 46.7 12.8 92 233-325 215-320 (397)
240 PF04184 ST7: ST7 protein; In 95.7 1.1 2.4E-05 43.7 16.9 152 309-472 213-381 (539)
241 PF08631 SPO22: Meiosis protei 95.7 1.8 3.9E-05 40.1 26.0 224 237-464 4-273 (278)
242 PF12921 ATP13: Mitochondrial 95.6 0.4 8.7E-06 38.0 12.0 82 125-206 4-100 (126)
243 smart00299 CLH Clathrin heavy 95.6 1 2.2E-05 36.7 15.4 41 232-273 13-53 (140)
244 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.6E-05 38.4 27.0 201 264-469 62-268 (291)
245 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.31 6.8E-06 47.1 12.3 68 120-187 72-141 (453)
246 smart00299 CLH Clathrin heavy 95.3 1.3 2.7E-05 36.1 16.4 83 302-392 13-95 (140)
247 KOG3941 Intermediate in Toll s 95.2 0.2 4.4E-06 44.6 9.8 89 223-311 64-173 (406)
248 PRK11906 transcriptional regul 95.2 1 2.2E-05 43.8 15.2 109 138-250 319-431 (458)
249 PF13512 TPR_18: Tetratricopep 95.2 0.69 1.5E-05 37.2 11.8 72 270-341 19-92 (142)
250 KOG1585 Protein required for f 95.1 2.1 4.6E-05 37.7 17.7 144 264-425 94-250 (308)
251 PF13428 TPR_14: Tetratricopep 95.1 0.071 1.5E-06 33.2 5.0 39 160-200 3-41 (44)
252 PF13512 TPR_18: Tetratricopep 95.0 0.79 1.7E-05 36.9 11.8 76 95-170 13-94 (142)
253 COG3118 Thioredoxin domain-con 94.8 3.2 6.8E-05 37.8 18.7 141 166-311 142-287 (304)
254 PRK11906 transcriptional regul 94.8 3.3 7.2E-05 40.4 17.2 149 312-464 274-434 (458)
255 COG4785 NlpI Lipoprotein NlpI, 94.7 2.6 5.6E-05 36.4 16.8 182 274-468 78-268 (297)
256 KOG1550 Extracellular protein 94.7 6.1 0.00013 40.7 21.8 181 174-362 228-428 (552)
257 COG1729 Uncharacterized protei 94.7 0.52 1.1E-05 42.2 10.9 101 368-472 144-250 (262)
258 COG1729 Uncharacterized protei 94.5 0.44 9.6E-06 42.6 10.2 93 160-255 144-244 (262)
259 COG0457 NrfG FOG: TPR repeat [ 94.5 3 6.6E-05 36.6 29.0 60 195-254 60-123 (291)
260 KOG1941 Acetylcholine receptor 94.5 1.1 2.3E-05 41.8 12.6 227 168-394 16-274 (518)
261 COG2909 MalT ATP-dependent tra 94.5 7.5 0.00016 41.0 27.9 198 272-469 426-650 (894)
262 KOG4555 TPR repeat-containing 94.4 0.97 2.1E-05 35.4 10.3 89 130-220 50-141 (175)
263 PF13431 TPR_17: Tetratricopep 94.2 0.062 1.3E-06 31.3 2.9 33 425-458 2-34 (34)
264 PF09205 DUF1955: Domain of un 94.2 2.2 4.7E-05 33.7 14.8 138 308-468 14-151 (161)
265 KOG3941 Intermediate in Toll s 94.2 0.48 1E-05 42.4 9.5 34 348-381 140-173 (406)
266 KOG2610 Uncharacterized conser 94.2 3.6 7.8E-05 38.0 15.0 152 168-322 113-273 (491)
267 PF02259 FAT: FAT domain; Int 94.2 5.6 0.00012 38.2 27.3 181 330-516 145-339 (352)
268 COG4105 ComL DNA uptake lipopr 94.1 4.2 9.1E-05 36.3 21.0 58 231-289 172-232 (254)
269 KOG1941 Acetylcholine receptor 94.0 5.3 0.00011 37.4 19.5 126 232-357 128-272 (518)
270 KOG4555 TPR repeat-containing 93.9 2.5 5.5E-05 33.2 12.2 51 204-254 53-105 (175)
271 PF13176 TPR_7: Tetratricopept 93.8 0.16 3.4E-06 30.0 4.2 27 439-465 1-27 (36)
272 PF13170 DUF4003: Protein of u 93.7 5.9 0.00013 36.9 16.3 50 139-188 78-133 (297)
273 KOG1550 Extracellular protein 93.6 3.9 8.4E-05 42.1 16.5 45 242-289 228-277 (552)
274 PF00515 TPR_1: Tetratricopept 93.3 0.23 5E-06 28.7 4.3 32 438-469 2-33 (34)
275 PF07719 TPR_2: Tetratricopept 93.3 0.27 5.9E-06 28.3 4.6 32 438-469 2-33 (34)
276 COG4649 Uncharacterized protei 93.2 4.3 9.3E-05 33.8 13.8 54 134-187 69-123 (221)
277 KOG0276 Vesicle coat complex C 93.0 2.3 5E-05 42.4 12.8 133 54-221 616-748 (794)
278 COG3629 DnrI DNA-binding trans 93.0 1.3 2.8E-05 40.4 10.5 76 298-374 155-235 (280)
279 PF10602 RPN7: 26S proteasome 93.0 1.8 3.8E-05 36.9 10.9 61 228-288 38-100 (177)
280 COG3629 DnrI DNA-binding trans 92.9 0.93 2E-05 41.3 9.5 58 160-219 155-212 (280)
281 KOG1258 mRNA processing protei 92.8 12 0.00025 37.7 34.1 113 69-187 62-180 (577)
282 PF13431 TPR_17: Tetratricopep 92.8 0.18 4E-06 29.3 3.3 32 181-214 2-33 (34)
283 KOG2066 Vacuolar assembly/sort 92.7 14 0.00031 38.4 34.2 146 99-253 363-532 (846)
284 KOG1920 IkappaB kinase complex 92.7 18 0.00039 39.6 24.5 154 208-393 894-1053(1265)
285 PF07035 Mic1: Colon cancer-as 92.7 5.3 0.00012 33.4 15.2 30 318-347 16-45 (167)
286 COG1747 Uncharacterized N-term 92.0 14 0.00029 36.6 21.0 176 121-305 64-248 (711)
287 PF10602 RPN7: 26S proteasome 91.6 4.7 0.0001 34.3 11.8 94 298-393 38-140 (177)
288 PF10345 Cohesin_load: Cohesin 91.5 20 0.00043 37.6 36.3 407 56-465 63-605 (608)
289 PF13176 TPR_7: Tetratricopept 91.4 0.51 1.1E-05 27.8 4.2 23 229-251 2-24 (36)
290 COG4649 Uncharacterized protei 90.8 8.6 0.00019 32.1 15.3 135 332-467 60-197 (221)
291 KOG1258 mRNA processing protei 90.5 21 0.00045 36.0 31.3 359 65-451 92-489 (577)
292 PF13174 TPR_6: Tetratricopept 90.4 0.49 1.1E-05 26.9 3.5 30 440-469 3-32 (33)
293 KOG4234 TPR repeat-containing 90.2 5.6 0.00012 34.0 10.5 90 235-326 104-198 (271)
294 KOG4570 Uncharacterized conser 90.1 5.2 0.00011 36.7 10.8 101 292-394 60-163 (418)
295 KOG0890 Protein kinase of the 90.1 48 0.001 39.5 24.9 150 128-285 1388-1542(2382)
296 PF09613 HrpB1_HrpK: Bacterial 89.6 11 0.00023 31.2 13.0 14 309-322 57-70 (160)
297 COG4455 ImpE Protein of avirul 89.5 1.9 4.2E-05 37.2 7.4 73 161-235 4-81 (273)
298 COG2909 MalT ATP-dependent tra 89.4 32 0.0007 36.6 30.3 223 168-391 425-684 (894)
299 KOG2610 Uncharacterized conser 89.3 19 0.00041 33.6 23.6 151 205-357 114-273 (491)
300 PF13374 TPR_10: Tetratricopep 89.2 1.1 2.3E-05 27.1 4.5 31 437-467 2-32 (42)
301 KOG0276 Vesicle coat complex C 88.9 8.4 0.00018 38.7 12.1 149 207-392 599-747 (794)
302 TIGR02561 HrpB1_HrpK type III 88.8 11 0.00025 30.5 12.0 18 169-186 55-72 (153)
303 PF07079 DUF1347: Protein of u 88.6 26 0.00055 34.2 31.0 345 101-471 15-414 (549)
304 KOG4570 Uncharacterized conser 88.5 5.2 0.00011 36.7 9.7 128 302-432 25-165 (418)
305 KOG2114 Vacuolar assembly/sort 88.5 36 0.00079 35.9 32.7 51 408-463 712-762 (933)
306 PF00637 Clathrin: Region in C 88.3 0.21 4.5E-06 40.9 1.0 54 129-182 13-66 (143)
307 PF13181 TPR_8: Tetratricopept 88.3 1 2.3E-05 25.8 3.8 31 438-468 2-32 (34)
308 PRK09687 putative lyase; Provi 88.2 22 0.00047 33.0 29.7 187 156-359 66-262 (280)
309 COG1747 Uncharacterized N-term 88.0 30 0.00065 34.3 21.0 165 224-395 64-234 (711)
310 PF13170 DUF4003: Protein of u 87.8 24 0.00051 33.0 24.0 140 312-453 78-233 (297)
311 KOG1920 IkappaB kinase complex 87.8 48 0.0011 36.6 31.2 110 333-463 941-1052(1265)
312 PF00515 TPR_1: Tetratricopept 87.7 1.7 3.7E-05 24.9 4.4 29 125-153 3-31 (34)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 4.7 0.0001 29.8 7.1 62 138-201 22-83 (103)
314 KOG0890 Protein kinase of the 87.2 75 0.0016 38.1 33.8 157 53-218 1384-1542(2382)
315 PF02284 COX5A: Cytochrome c o 87.1 3.3 7.2E-05 30.9 6.4 54 417-470 25-78 (108)
316 PRK12798 chemotaxis protein; R 87.0 31 0.00067 33.4 15.9 138 379-518 125-273 (421)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 87.0 3.6 7.7E-05 30.4 6.4 52 417-468 22-73 (103)
318 KOG4648 Uncharacterized conser 86.8 3.1 6.8E-05 38.5 7.5 51 340-392 106-157 (536)
319 PF07719 TPR_2: Tetratricopept 86.3 2.2 4.8E-05 24.2 4.4 28 126-153 4-31 (34)
320 PF11207 DUF2989: Protein of u 86.2 8.4 0.00018 33.1 9.3 79 376-457 117-198 (203)
321 KOG4642 Chaperone-dependent E3 86.1 12 0.00027 33.0 10.3 114 344-461 23-141 (284)
322 KOG4234 TPR repeat-containing 86.0 8.1 0.00018 33.1 8.9 90 376-469 105-200 (271)
323 KOG4648 Uncharacterized conser 85.9 3 6.4E-05 38.6 6.9 51 202-252 105-157 (536)
324 PF06552 TOM20_plant: Plant sp 85.8 9.6 0.00021 32.1 9.2 41 242-290 96-136 (186)
325 PF11207 DUF2989: Protein of u 85.4 9.1 0.0002 32.9 9.1 21 295-315 177-197 (203)
326 PF13374 TPR_10: Tetratricopep 84.7 2.7 5.9E-05 25.2 4.5 26 228-253 4-29 (42)
327 KOG2063 Vacuolar assembly/sort 84.4 55 0.0012 35.4 16.1 116 228-343 506-638 (877)
328 PF02284 COX5A: Cytochrome c o 84.4 5.8 0.00012 29.7 6.5 59 141-201 28-86 (108)
329 PF07035 Mic1: Colon cancer-as 84.1 24 0.00051 29.6 16.0 38 181-219 17-54 (167)
330 KOG2066 Vacuolar assembly/sort 84.1 59 0.0013 34.1 24.5 105 129-238 362-467 (846)
331 PRK15180 Vi polysaccharide bio 83.7 33 0.00072 33.6 12.9 89 201-290 330-420 (831)
332 COG5159 RPN6 26S proteasome re 83.5 23 0.00049 32.3 11.0 24 441-464 129-152 (421)
333 TIGR02561 HrpB1_HrpK type III 82.8 11 0.00023 30.7 8.0 51 342-396 21-74 (153)
334 COG4785 NlpI Lipoprotein NlpI, 82.3 33 0.00072 29.9 15.8 65 123-188 99-163 (297)
335 PF07721 TPR_4: Tetratricopept 82.1 2 4.3E-05 23.0 2.7 23 439-461 3-25 (26)
336 COG3947 Response regulator con 82.1 41 0.00089 30.8 14.8 70 299-369 282-356 (361)
337 KOG1586 Protein required for f 81.5 38 0.00082 30.0 19.1 59 372-432 160-225 (288)
338 PF00637 Clathrin: Region in C 81.3 0.77 1.7E-05 37.5 1.3 86 302-394 13-98 (143)
339 PF04190 DUF410: Protein of un 80.6 46 0.001 30.4 18.4 100 365-484 89-202 (260)
340 PRK13184 pknD serine/threonine 80.3 98 0.0021 34.1 28.7 349 54-430 477-868 (932)
341 PF14853 Fis1_TPR_C: Fis1 C-te 80.2 10 0.00022 24.7 5.9 37 441-477 5-41 (53)
342 TIGR03504 FimV_Cterm FimV C-te 79.9 3.6 7.8E-05 25.5 3.6 27 442-468 4-30 (44)
343 PF07163 Pex26: Pex26 protein; 79.4 23 0.0005 32.2 9.6 87 130-217 90-181 (309)
344 PF04097 Nic96: Nup93/Nic96; 79.0 89 0.0019 32.8 22.4 222 233-463 265-531 (613)
345 PF06552 TOM20_plant: Plant sp 78.6 31 0.00066 29.2 9.6 26 349-376 98-123 (186)
346 smart00028 TPR Tetratricopepti 78.2 4 8.6E-05 22.1 3.4 30 439-468 3-32 (34)
347 PRK10941 hypothetical protein; 77.6 21 0.00046 32.7 9.4 68 405-474 185-252 (269)
348 PF07163 Pex26: Pex26 protein; 77.4 34 0.00074 31.1 10.1 57 268-324 90-146 (309)
349 PF04097 Nic96: Nup93/Nic96; 76.3 1.1E+02 0.0023 32.3 21.4 216 128-360 116-356 (613)
350 PF13174 TPR_6: Tetratricopept 76.2 4.6 9.9E-05 22.6 3.2 24 232-255 6-29 (33)
351 COG5159 RPN6 26S proteasome re 76.2 63 0.0014 29.6 14.5 126 232-357 9-151 (421)
352 PF13181 TPR_8: Tetratricopept 76.0 8.8 0.00019 21.7 4.4 27 228-254 3-29 (34)
353 PF08424 NRDE-2: NRDE-2, neces 75.8 74 0.0016 30.2 17.2 118 277-396 47-184 (321)
354 COG2976 Uncharacterized protei 75.6 52 0.0011 28.3 14.2 90 269-360 97-188 (207)
355 PRK09687 putative lyase; Provi 73.5 77 0.0017 29.3 29.5 136 295-447 141-277 (280)
356 TIGR03504 FimV_Cterm FimV C-te 73.4 8.5 0.00018 23.9 3.9 23 232-254 5-27 (44)
357 PF02259 FAT: FAT domain; Int 73.1 88 0.0019 29.8 25.3 65 225-289 145-212 (352)
358 KOG2471 TPR repeat-containing 72.8 77 0.0017 31.4 11.8 106 341-449 250-381 (696)
359 KOG3364 Membrane protein invol 72.1 19 0.00042 28.7 6.5 58 416-473 49-107 (149)
360 KOG1464 COP9 signalosome, subu 70.9 82 0.0018 28.5 22.0 86 301-387 150-252 (440)
361 PF13929 mRNA_stabil: mRNA sta 70.6 88 0.0019 28.8 14.0 143 126-271 134-288 (292)
362 PF12069 DUF3549: Protein of u 70.3 1E+02 0.0022 29.3 13.0 169 94-273 131-310 (340)
363 PHA02875 ankyrin repeat protei 69.9 60 0.0013 32.0 11.5 211 201-438 6-231 (413)
364 KOG4507 Uncharacterized conser 69.9 26 0.00056 35.4 8.2 99 105-206 620-722 (886)
365 COG4455 ImpE Protein of avirul 69.5 79 0.0017 27.8 11.7 76 299-375 4-81 (273)
366 COG2976 Uncharacterized protei 69.4 74 0.0016 27.4 15.8 53 339-394 97-154 (207)
367 KOG4077 Cytochrome c oxidase, 69.2 54 0.0012 25.8 8.5 51 420-470 67-117 (149)
368 KOG4642 Chaperone-dependent E3 69.2 85 0.0018 28.0 10.3 81 136-220 23-104 (284)
369 PF07575 Nucleopor_Nup85: Nup8 69.0 1.5E+02 0.0033 30.8 20.8 77 316-394 390-466 (566)
370 KOG2034 Vacuolar sorting prote 68.9 1.7E+02 0.0037 31.5 25.1 170 98-286 364-555 (911)
371 KOG0687 26S proteasome regulat 68.6 1E+02 0.0023 28.8 13.6 117 332-451 105-230 (393)
372 PF13762 MNE1: Mitochondrial s 68.2 64 0.0014 26.3 9.6 77 334-410 42-124 (145)
373 KOG2422 Uncharacterized conser 67.7 1.5E+02 0.0032 30.2 16.2 144 66-209 252-431 (665)
374 PF13762 MNE1: Mitochondrial s 67.6 60 0.0013 26.5 8.6 78 197-274 42-128 (145)
375 COG0790 FOG: TPR repeat, SEL1 66.6 1.1E+02 0.0024 28.4 24.1 51 135-188 53-107 (292)
376 TIGR02508 type_III_yscG type I 66.6 53 0.0012 24.7 8.3 51 305-361 48-98 (115)
377 PF10475 DUF2450: Protein of u 66.5 90 0.0019 29.1 11.1 109 337-457 104-217 (291)
378 PF10579 Rapsyn_N: Rapsyn N-te 66.0 23 0.0005 25.2 5.2 46 343-388 18-65 (80)
379 PRK10941 hypothetical protein; 65.3 93 0.002 28.6 10.6 54 163-218 186-239 (269)
380 KOG1586 Protein required for f 64.9 1E+02 0.0022 27.4 18.3 23 236-258 164-186 (288)
381 PF13934 ELYS: Nuclear pore co 64.6 1E+02 0.0023 27.4 13.4 96 133-237 88-183 (226)
382 PRK11619 lytic murein transgly 64.0 2E+02 0.0043 30.4 34.3 116 345-464 255-373 (644)
383 PF13929 mRNA_stabil: mRNA sta 63.9 1.2E+02 0.0026 27.9 22.5 116 241-356 143-263 (292)
384 PF09670 Cas_Cas02710: CRISPR- 63.8 1.4E+02 0.0031 29.0 12.3 57 303-360 138-198 (379)
385 COG4941 Predicted RNA polymera 63.6 1.3E+02 0.0029 28.3 11.5 116 312-431 272-394 (415)
386 PF11846 DUF3366: Domain of un 63.4 26 0.00056 30.3 6.5 44 423-468 132-175 (193)
387 PRK14963 DNA polymerase III su 62.5 1.9E+02 0.004 29.6 14.7 45 348-394 178-223 (504)
388 TIGR02508 type_III_yscG type I 62.4 65 0.0014 24.3 9.3 86 173-264 20-105 (115)
389 PF08311 Mad3_BUB1_I: Mad3/BUB 61.9 69 0.0015 25.4 8.1 42 141-182 81-123 (126)
390 COG0790 FOG: TPR repeat, SEL1 61.6 1.4E+02 0.003 27.7 22.7 48 417-468 206-268 (292)
391 KOG4507 Uncharacterized conser 61.6 55 0.0012 33.2 8.7 100 171-272 620-721 (886)
392 PF11848 DUF3368: Domain of un 60.7 40 0.00087 21.3 5.6 39 405-445 7-45 (48)
393 COG5187 RPN7 26S proteasome re 59.9 1.4E+02 0.0031 27.4 13.3 95 192-288 113-219 (412)
394 PF07575 Nucleopor_Nup85: Nup8 59.8 1E+02 0.0022 32.1 11.1 31 378-408 507-537 (566)
395 PF04190 DUF410: Protein of un 59.3 1.4E+02 0.0031 27.2 20.7 82 192-289 88-169 (260)
396 PF09986 DUF2225: Uncharacteri 58.3 89 0.0019 27.6 8.9 53 419-471 142-199 (214)
397 cd00280 TRFH Telomeric Repeat 58.2 92 0.002 26.5 8.2 20 446-465 120-139 (200)
398 PF10579 Rapsyn_N: Rapsyn N-te 58.1 32 0.00069 24.5 4.8 45 416-460 20-66 (80)
399 KOG2297 Predicted translation 58.0 1.6E+02 0.0035 27.4 15.1 17 298-314 323-339 (412)
400 PF14689 SPOB_a: Sensor_kinase 58.0 36 0.00078 23.0 5.0 13 305-317 32-44 (62)
401 PF09986 DUF2225: Uncharacteri 58.0 1.3E+02 0.0029 26.5 10.1 65 370-434 122-197 (214)
402 KOG3807 Predicted membrane pro 57.8 1.7E+02 0.0036 27.5 11.2 17 378-394 228-244 (556)
403 KOG0686 COP9 signalosome, subu 57.6 1.9E+02 0.0041 28.1 14.6 61 228-289 152-215 (466)
404 PF12862 Apc5: Anaphase-promot 57.4 58 0.0012 24.1 6.7 23 164-186 47-69 (94)
405 KOG0686 COP9 signalosome, subu 57.4 1.9E+02 0.0042 28.1 18.1 54 436-491 305-362 (466)
406 PRK11619 lytic murein transgly 56.7 2.7E+02 0.0058 29.5 34.0 369 64-466 45-436 (644)
407 PF14689 SPOB_a: Sensor_kinase 56.4 35 0.00077 23.0 4.8 46 242-289 6-51 (62)
408 KOG1464 COP9 signalosome, subu 56.3 1.6E+02 0.0034 26.8 15.8 49 275-323 41-92 (440)
409 PF04910 Tcf25: Transcriptiona 55.8 2E+02 0.0043 27.8 17.0 54 339-392 111-165 (360)
410 KOG2297 Predicted translation 55.6 1.8E+02 0.0038 27.1 16.3 69 273-351 267-341 (412)
411 PF10366 Vps39_1: Vacuolar sor 55.4 94 0.002 23.9 8.6 26 334-359 42-67 (108)
412 PF09670 Cas_Cas02710: CRISPR- 55.1 2.1E+02 0.0046 27.9 12.7 57 130-187 138-198 (379)
413 KOG0376 Serine-threonine phosp 55.0 30 0.00065 34.0 5.7 90 135-227 16-106 (476)
414 PF14853 Fis1_TPR_C: Fis1 C-te 54.7 29 0.00064 22.5 4.0 31 373-405 8-38 (53)
415 cd08819 CARD_MDA5_2 Caspase ac 54.6 82 0.0018 23.0 7.0 15 274-288 49-63 (88)
416 PF13934 ELYS: Nuclear pore co 54.6 1.6E+02 0.0034 26.3 11.2 106 95-208 79-186 (226)
417 KOG2908 26S proteasome regulat 54.4 1.4E+02 0.0031 28.1 9.6 65 302-366 81-155 (380)
418 KOG4077 Cytochrome c oxidase, 53.9 89 0.0019 24.7 7.0 45 143-187 69-113 (149)
419 PF11663 Toxin_YhaV: Toxin wit 53.8 13 0.00028 29.6 2.5 30 416-447 109-138 (140)
420 PF11848 DUF3368: Domain of un 52.1 59 0.0013 20.6 5.2 31 238-268 14-44 (48)
421 PRK13342 recombination factor 51.2 2.6E+02 0.0056 27.7 16.5 152 241-394 152-333 (413)
422 KOG4279 Serine/threonine prote 50.5 1.6E+02 0.0035 31.0 10.1 172 120-291 198-396 (1226)
423 PRK10564 maltose regulon perip 50.4 34 0.00074 31.6 5.1 44 222-265 252-296 (303)
424 PF04762 IKI3: IKI3 family; I 50.4 4E+02 0.0087 29.7 14.7 22 199-220 699-720 (928)
425 PF11838 ERAP1_C: ERAP1-like C 49.6 2.3E+02 0.005 26.6 12.9 83 174-256 146-231 (324)
426 PF11663 Toxin_YhaV: Toxin wit 49.4 20 0.00042 28.6 2.9 34 236-271 105-138 (140)
427 KOG3807 Predicted membrane pro 49.2 2.3E+02 0.005 26.6 18.0 58 336-395 280-340 (556)
428 PF10366 Vps39_1: Vacuolar sor 48.8 1.2E+02 0.0026 23.3 8.8 26 126-151 42-67 (108)
429 PF08424 NRDE-2: NRDE-2, neces 48.6 2.4E+02 0.0053 26.7 20.8 80 312-393 47-129 (321)
430 smart00804 TAP_C C-terminal do 47.9 15 0.00033 24.9 1.9 23 172-194 39-61 (63)
431 cd00280 TRFH Telomeric Repeat 47.8 1.4E+02 0.0031 25.4 7.8 39 373-414 118-156 (200)
432 PF11846 DUF3366: Domain of un 47.6 63 0.0014 27.9 6.3 28 192-219 142-169 (193)
433 smart00386 HAT HAT (Half-A-TPR 47.4 46 0.001 18.0 4.0 28 172-201 1-28 (33)
434 PF04910 Tcf25: Transcriptiona 46.6 2.8E+02 0.0061 26.8 21.4 56 233-288 110-166 (360)
435 KOG4521 Nuclear pore complex, 46.4 4.8E+02 0.01 29.5 17.3 126 332-461 984-1126(1480)
436 KOG4567 GTPase-activating prot 46.3 2.2E+02 0.0048 26.6 9.3 44 351-394 263-306 (370)
437 KOG0128 RNA-binding protein SA 46.1 4.1E+02 0.0089 28.6 30.7 86 382-468 442-528 (881)
438 COG5187 RPN7 26S proteasome re 45.8 2.5E+02 0.0054 26.0 13.1 28 296-323 115-142 (412)
439 cd08819 CARD_MDA5_2 Caspase ac 45.7 1.2E+02 0.0026 22.2 7.1 36 343-383 48-83 (88)
440 PF09477 Type_III_YscG: Bacter 44.5 1.4E+02 0.0031 22.8 9.6 79 172-255 20-98 (116)
441 KOG2659 LisH motif-containing 44.5 2.3E+02 0.0049 25.2 9.4 21 200-220 70-90 (228)
442 PF09477 Type_III_YscG: Bacter 44.4 1.4E+02 0.0031 22.8 8.9 78 346-431 21-98 (116)
443 COG0735 Fur Fe2+/Zn2+ uptake r 44.3 1.3E+02 0.0029 24.5 7.3 46 163-209 25-70 (145)
444 PRK10564 maltose regulon perip 44.3 54 0.0012 30.3 5.3 43 257-299 252-295 (303)
445 PF14669 Asp_Glu_race_2: Putat 44.1 2.1E+02 0.0046 24.7 15.0 57 335-391 136-206 (233)
446 COG5108 RPO41 Mitochondrial DN 43.5 1.3E+02 0.0029 31.1 8.2 91 266-359 33-131 (1117)
447 PF00244 14-3-3: 14-3-3 protei 43.3 2.5E+02 0.0054 25.2 10.2 58 231-288 6-64 (236)
448 KOG0687 26S proteasome regulat 43.2 2.9E+02 0.0063 26.1 14.9 93 194-288 104-208 (393)
449 PF11817 Foie-gras_1: Foie gra 43.2 1.3E+02 0.0028 27.2 7.8 17 270-286 187-203 (247)
450 PF14561 TPR_20: Tetratricopep 43.1 1.3E+02 0.0029 22.1 8.8 32 157-188 21-52 (90)
451 KOG2300 Uncharacterized conser 42.7 3.6E+02 0.0079 27.0 32.8 377 129-508 13-474 (629)
452 KOG0292 Vesicle coat complex C 42.6 2E+02 0.0043 31.1 9.5 130 102-255 653-782 (1202)
453 COG4259 Uncharacterized protei 42.5 1.4E+02 0.003 22.5 6.2 54 418-471 53-106 (121)
454 KOG2471 TPR repeat-containing 42.2 2.6E+02 0.0057 28.0 9.7 106 201-308 247-381 (696)
455 KOG2034 Vacuolar sorting prote 40.6 5.1E+02 0.011 28.2 28.4 178 54-251 360-555 (911)
456 KOG0991 Replication factor C, 40.3 2.8E+02 0.006 24.9 14.9 102 341-447 169-282 (333)
457 PF10345 Cohesin_load: Cohesin 40.1 4.7E+02 0.01 27.5 43.2 411 69-483 38-580 (608)
458 COG3947 Response regulator con 40.0 3.1E+02 0.0068 25.5 17.2 48 415-463 292-339 (361)
459 PF10255 Paf67: RNA polymerase 39.8 1.7E+02 0.0037 28.7 8.3 58 196-253 124-191 (404)
460 KOG1308 Hsp70-interacting prot 39.4 30 0.00066 32.4 3.0 89 171-261 127-217 (377)
461 KOG2396 HAT (Half-A-TPR) repea 39.2 4.2E+02 0.0091 26.7 35.8 79 70-154 89-171 (568)
462 KOG4279 Serine/threonine prote 39.1 4.6E+02 0.01 28.0 11.2 22 447-468 376-397 (1226)
463 PF02847 MA3: MA3 domain; Int 39.1 1.7E+02 0.0038 22.3 7.7 23 371-393 7-29 (113)
464 PRK11639 zinc uptake transcrip 39.0 1.5E+02 0.0033 24.9 7.1 37 136-172 38-74 (169)
465 PHA02875 ankyrin repeat protei 38.7 3.9E+02 0.0085 26.2 14.2 16 104-119 11-26 (413)
466 COG0735 Fur Fe2+/Zn2+ uptake r 38.5 2.2E+02 0.0047 23.3 7.7 60 320-380 10-69 (145)
467 PF09454 Vps23_core: Vps23 cor 38.2 73 0.0016 21.8 4.0 32 260-291 7-38 (65)
468 PF11817 Foie-gras_1: Foie gra 37.9 1.5E+02 0.0032 26.9 7.3 59 195-253 179-245 (247)
469 PF10255 Paf67: RNA polymerase 37.4 4.1E+02 0.009 26.1 14.4 90 96-185 79-191 (404)
470 COG5108 RPO41 Mitochondrial DN 37.4 1.7E+02 0.0038 30.4 8.0 92 163-254 33-131 (1117)
471 KOG0376 Serine-threonine phosp 36.7 91 0.002 30.8 5.9 104 233-341 11-115 (476)
472 PF09454 Vps23_core: Vps23 cor 36.3 1.2E+02 0.0027 20.7 4.9 49 156-206 6-54 (65)
473 PF11838 ERAP1_C: ERAP1-like C 35.6 3.8E+02 0.0082 25.1 18.8 29 331-359 201-229 (324)
474 KOG1114 Tripeptidyl peptidase 35.6 6.4E+02 0.014 27.8 12.8 63 330-393 1230-1293(1304)
475 PRK09857 putative transposase; 35.3 3.1E+02 0.0067 25.6 9.1 63 265-328 210-272 (292)
476 PF12862 Apc5: Anaphase-promot 34.9 1.9E+02 0.004 21.4 7.7 21 200-220 47-67 (94)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 34.5 2.3E+02 0.0051 22.4 9.5 44 176-219 81-124 (126)
478 KOG4521 Nuclear pore complex, 34.3 7.4E+02 0.016 28.1 12.8 24 490-513 1309-1332(1480)
479 PF14669 Asp_Glu_race_2: Putat 34.0 3.1E+02 0.0067 23.7 13.6 55 266-320 137-205 (233)
480 PF14561 TPR_20: Tetratricopep 33.9 1.9E+02 0.0042 21.2 9.0 33 293-325 19-51 (90)
481 smart00544 MA3 Domain in DAP-5 33.9 2.1E+02 0.0047 21.8 11.5 101 370-485 6-107 (113)
482 KOG1839 Uncharacterized protei 33.6 7.6E+02 0.016 28.3 12.6 63 191-253 970-1042(1236)
483 KOG1839 Uncharacterized protei 33.6 5.8E+02 0.012 29.2 11.7 151 131-282 940-1120(1236)
484 KOG0292 Vesicle coat complex C 33.5 4.1E+02 0.009 28.9 10.1 177 207-431 606-782 (1202)
485 KOG4567 GTPase-activating prot 33.5 2.8E+02 0.0061 25.9 8.0 72 316-392 263-344 (370)
486 PRK08691 DNA polymerase III su 33.2 6.3E+02 0.014 27.0 12.7 46 347-394 180-226 (709)
487 PF00244 14-3-3: 14-3-3 protei 32.0 3.8E+02 0.0082 24.1 11.2 23 446-468 178-200 (236)
488 PF09797 NatB_MDM20: N-acetylt 32.0 4.8E+02 0.01 25.2 22.5 22 372-393 223-244 (365)
489 KOG1308 Hsp70-interacting prot 31.3 30 0.00066 32.4 1.8 94 236-331 124-217 (377)
490 PF10475 DUF2450: Protein of u 31.3 4.4E+02 0.0094 24.6 10.6 52 200-254 104-155 (291)
491 PF03943 TAP_C: TAP C-terminal 29.7 24 0.00051 22.8 0.6 24 171-194 26-49 (51)
492 KOG0403 Neoplastic transformat 29.6 5.7E+02 0.012 25.4 19.4 93 369-467 512-612 (645)
493 COG5116 RPN2 26S proteasome re 29.6 6.4E+02 0.014 26.0 15.5 26 335-360 212-237 (926)
494 KOG3364 Membrane protein invol 29.4 3.1E+02 0.0067 22.2 9.4 24 337-360 77-100 (149)
495 PHA02537 M terminase endonucle 29.4 4.1E+02 0.009 23.7 9.7 102 66-188 97-208 (230)
496 COG4941 Predicted RNA polymera 28.8 5.2E+02 0.011 24.6 10.2 115 277-394 272-393 (415)
497 PF02847 MA3: MA3 domain; Int 28.6 2.5E+02 0.0053 21.4 6.4 22 200-221 8-29 (113)
498 COG2256 MGS1 ATPase related to 27.9 5.9E+02 0.013 25.0 13.9 47 299-345 249-298 (436)
499 COG4010 Uncharacterized protei 27.9 2.9E+02 0.0064 22.3 6.3 56 458-513 10-65 (170)
500 KOG1463 26S proteasome regulat 27.7 5.4E+02 0.012 24.5 10.6 127 338-465 11-156 (411)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-61 Score=506.71 Aligned_cols=459 Identities=15% Similarity=0.219 Sum_probs=418.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGD 135 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 135 (526)
..+...+.+.|++++|+++|+++...+. ...+...+..++..+.+.|.+++|..+++.+..++..+|+.++.+|++
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gv----v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGL----LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3445556668999999999999986542 334455677889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 78999999999999999999999999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 216 VFDVM---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN--RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 216 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
+|++| ++.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999 7899999999999999999999999999999986 679999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043068 291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFN 370 (526)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 370 (526)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068 371 AVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE 450 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 450 (526)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+||+. |++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG-NQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCc------c-----chhHHHHHHHHHHHHHHHhcCCcc
Q 043068 451 GNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGS------W-----ISRFVFVHQVVVIMERTVEDGKRS 519 (526)
Q Consensus 451 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~-----~~~~~~~~~~~~~~~~~~~~g~~~ 519 (526)
|++++|.+++++|.+.|. .|+...+.+ +.+.+...+...+.. | -....+..+++.+.+++.+.|..+
T Consensus 768 G~le~A~~l~~~M~k~Gi-~pd~~tyns-LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGI-KPNLVMCRC-ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHH-HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999998 677666644 344443222211111 0 112245677899999999999988
Q ss_pred cce
Q 043068 520 ECL 522 (526)
Q Consensus 520 ~~~ 522 (526)
|..
T Consensus 846 d~~ 848 (1060)
T PLN03218 846 TME 848 (1060)
T ss_pred CHH
Confidence 854
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-58 Score=485.72 Aligned_cols=452 Identities=17% Similarity=0.253 Sum_probs=405.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC----CCCHHHHHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN----KLSDFFISKLIK 131 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~ 131 (526)
..+...+.+.|..+.|+.+|+.+.. ++..+|+.++.++++.|+++.|..+++.+. .++..+|+.||.
T Consensus 410 ~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 410 AKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456667788999999999998753 345679999999999999999999998653 678899999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|+++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988 8999999999999999999999
Q ss_pred hHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 212 NAKKVFDVM-----TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 212 ~A~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
+|.++|++| ++.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999998 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG 446 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 446 (526)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++. |++++|.+++++|.+.|+.||..+|++|+..
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998886 9999999999999999999999999999876
Q ss_pred HHh----C-------------------CCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHH----------H---HHH
Q 043068 447 YCE----E-------------------GNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLL----------M---WIV 490 (526)
Q Consensus 447 ~~~----~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~ 490 (526)
|.+ . +..++|..+|++|++.|. .|+..+|...+ +++. + ...
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi-~Pd~~T~~~vL--~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT-LPTMEVLSQVL--GCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC-CCCHHHHHHHH--HHhcccccHHHHHHHHHHhcc
Confidence 432 1 124679999999999998 78877775543 2220 0 000
Q ss_pred hc--------CccchhH-HHHHHHHHHHHHHHhcCCcccc
Q 043068 491 TG--------GSWISRF-VFVHQVVVIMERTVEDGKRSEC 521 (526)
Q Consensus 491 ~g--------~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 521 (526)
.+ .+.++.. ....+++.+.+++...|..++.
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCc
Confidence 01 1111111 1235788888888888877764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-58 Score=483.17 Aligned_cols=409 Identities=19% Similarity=0.239 Sum_probs=359.4
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHhcCCCCC-CC------------------------------CCcCChhhHHHHHHHH
Q 043068 54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPN-PN------------------------------KYHHTTPCYTAITDVL 102 (526)
Q Consensus 54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~ 102 (526)
+-+.++..+.+.|++++|+.+|+|+....+. |+ ++.++..+|+.+++.|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4466777888899999999999999754321 11 1223445667777777
Q ss_pred HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068 103 LSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH 182 (526)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (526)
++.|+++.|.++|+++..++..+|+.++.+|++.|++++|+++|++|.+.|..|+..+|+.++.++++.|..+.+.+++.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL 262 (526)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 262 (526)
.+.+.| +.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+||+++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 249 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 249 CVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 777776 67888899999999999999999999999997 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
||+.++.+|++.|++++|.++++.|.+.|+.||..++++++++|++.|++++|.++|++|.+ ||..+||.||.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999964 68999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc-CCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ-MDCLPNFVSYNTIICGLCMAKGRMQDV 421 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~g~~~~a 421 (526)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.++++. |++++|
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~-G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE-GLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc-CCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 69999999999999999997 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+.++..+.
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 9999876 68899999999999999999999999999999888775443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-56 Score=478.57 Aligned_cols=463 Identities=18% Similarity=0.270 Sum_probs=369.0
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCc------------------------------CChhhHHHHHHHH
Q 043068 53 LGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYH------------------------------HTTPCYTAITDVL 102 (526)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~ 102 (526)
.+.+.++..+.+.|++++|+.+|+.+...+..|+.+. .+..+|+.+++.|
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 4558888999999999999999999976555454332 3455789999999
Q ss_pred HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068 103 LSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH 182 (526)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (526)
++.|+++.|..+|+++..++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.|+++.|.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL 262 (526)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 262 (526)
.+.+.| +.||..+|+.|+.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 313 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 313 YVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 999998 89999999999999999999999999999997 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN---------------- 326 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------------- 326 (526)
||+.++.+|++.|++++|.++++.|.+.|+.|+..++++++.+|++.|++++|.++|++|.+.+
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999988888888888887764321
Q ss_pred --------------C-----------------------------------------------------------------
Q 043068 327 --------------M----------------------------------------------------------------- 327 (526)
Q Consensus 327 --------------~----------------------------------------------------------------- 327 (526)
+
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc-cCCCCcCHHHHHH
Q 043068 328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP-QMDCLPNFVSYNT 406 (526)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~ 406 (526)
.+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 234455666666666667777777777777766777777777777777777777777777777776 4566677777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHH----
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVD---- 482 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~---- 482 (526)
++.++++. |++++|.+++++| .+.||..+|++|+.+|..+|+.+.+....+++.+..+..+.....+..+..
T Consensus 631 lv~~l~r~-G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 631 VVDLLGRA-GKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHhC-CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 77776665 7777777777666 356677777777777766677776666666666666654443333322211
Q ss_pred ------HHHH-----HHHHhcCccchhHHHHH----------------HHH-HHHHHHHhcCCcccc
Q 043068 483 ------ALLL-----MWIVTGGSWISRFVFVH----------------QVV-VIMERTVEDGKRSEC 521 (526)
Q Consensus 483 ------~~~~-----~~~~~g~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~~~~ 521 (526)
..-. ..+.+|+||+|.+..+| +.+ .+.++.-+.||.+|.
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 0011 11467899998654432 222 244444478998774
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-55 Score=466.15 Aligned_cols=414 Identities=16% Similarity=0.222 Sum_probs=379.8
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCc------------------------------CChhhHHHHHHH
Q 043068 52 CLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYH------------------------------HTTPCYTAITDV 101 (526)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~ 101 (526)
..+.+.++..+.+.|++++|+.+|+.+...+..|+... .+...++.++..
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 34557788888999999999999998876532222211 223467889999
Q ss_pred HHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043068 102 LLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFF 181 (526)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (526)
|++.|+++.|..+|+++..++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.+++..+.+++
T Consensus 131 ~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred HHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043068 182 HQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE 261 (526)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 261 (526)
..+.+.| +.||..+++.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 211 ~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 211 AHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 9999998 89999999999999999999999999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
.||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~ 364 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGY 364 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 36888999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068 342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a 421 (526)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++. |++++|
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A 443 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-KCIDKA 443 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT 478 (526)
Q Consensus 422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 478 (526)
.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+. ..|+..++..
T Consensus 444 ~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~ 494 (857)
T PLN03077 444 LEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIA 494 (857)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHH
Confidence 99999985 457889999999999999999999999999763 3566666643
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-52 Score=435.78 Aligned_cols=426 Identities=16% Similarity=0.238 Sum_probs=386.4
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhc----CCCCHHHHHHH
Q 043068 54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS----NKLSDFFISKL 129 (526)
Q Consensus 54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l 129 (526)
+.+.+...+.+.|+++.|.++|+.+.. | +..+|+.++.+|++.|++++|..+|+++ ..++..+|+.+
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~-----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE----R-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC----C-----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 446778888889999999999998753 2 3346999999999999999999999875 46778899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 209 (526)
+.+|+..|+.+.+.+++..+.+.|..+|..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|+
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999985 4689999999999999999
Q ss_pred hhhHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 210 IENAKKVFDVM---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 210 ~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
+++|.++|++| ++.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+++|++.|++++|.++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-RGLKPT 365 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~ 365 (526)
|. .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+
T Consensus 386 m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 96 5899999999999999999999999999999999999999999999999999999999999999976 599999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068 366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445 (526)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 445 (526)
..+|+.++.+|++.|++++|.+++++|. +.|+..+|+.++.+++.. |+++.|..+++++.+.++. +..+|..|++
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~-g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~ 536 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIH-KNLELGRLAAEKLYGMGPE-KLNNYVVLLN 536 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHhCCCCC-CCcchHHHHH
Confidence 9999999999999999999999999874 679999999999997765 9999999999999865433 5779999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHH-----------------HHHHHHH
Q 043068 446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVF-----------------VHQVVVI 508 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~~ 508 (526)
.|++.|++++|.+++++|.++|...+ +|++|++.+.. ....-.+
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~k~-------------------~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLSMH-------------------PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCccC-------------------CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999998544 48888875422 2222344
Q ss_pred HHHHHhcCCcccc
Q 043068 509 MERTVEDGKRSEC 521 (526)
Q Consensus 509 ~~~~~~~g~~~~~ 521 (526)
+++.-+.||.+|.
T Consensus 598 ~~~~~~~gy~~~~ 610 (697)
T PLN03081 598 MKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHcCCCCCc
Confidence 4444478888874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-26 Score=252.64 Aligned_cols=406 Identities=14% Similarity=0.139 Sum_probs=285.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC----------------
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---------------- 119 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------- 119 (526)
..+..++...|++++|+.+|+++....|. ....+..++..+...|++++|...+++..
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPE------NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 34556666677788888888777765442 12334555555555555555555544322
Q ss_pred ---------------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068 120 ---------------------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE 178 (526)
Q Consensus 120 ---------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (526)
+.++..+..+...|...|++++|.+.|+++....+ .+...+..+...+...|++++|.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 22344556666666666777777777766665443 33455566666666677777777
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068 179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG 256 (526)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 256 (526)
+.|+++.+.+ |.+..++..+...+.+.|+.++|..+++++ ..+.+...+..++..+.+.|++++|.++++++.+..
T Consensus 520 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 520 QRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 7777776654 556667777777777777777777777766 223345566677777777778888888777777653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068 257 CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV 336 (526)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (526)
+.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+++++.+..+. +..++..
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 674 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIG 674 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 3366777788888888888888888888877654 456667777888888888888888888888776433 5677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 043068 337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG 416 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g 416 (526)
++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+...+... |
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~-g 750 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS-G 750 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC-C
Confidence 8888888888888888888887664 3456677778888888888888888888888744 5556666677776665 8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT 478 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 478 (526)
+.++|.+.++++++..+. +...+..+...|.+.|++++|.+.|+++++.++..+...+.++
T Consensus 751 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 888898888888886543 7788888888889999999999999999888876665555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.6e-26 Score=247.09 Aligned_cols=399 Identities=12% Similarity=0.102 Sum_probs=248.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY 133 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 133 (526)
.+..++...|++++|...|+.+.+..|. ...++..++..+...|++++|...+++.. +.+...+..+...+
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3444555556666666666665554332 12335555666666666666666665432 22334555566666
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (526)
...|++++|..+|+++...++ .+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++.+.|++++|
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655443 344555566666666666666666666666554 55666666666666666666666
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 214 KKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 214 ~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
.+.|+++ . .+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+..
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666665 2 12345556666666666677777777666666543 2245566666666666777777777776666554
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068 292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 371 (526)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 371 (526)
+.+...+..+...+.+.|++++|...|+++...+. +..++..++..+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 700 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 775 (899)
T TIGR02917 700 -PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTA 775 (899)
T ss_pred -cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45556666666677777777777777777666543 33555666667777777777777777766543 335566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068 372 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG 451 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 451 (526)
+...|.+.|++++|.+.|+++.+.. +.+...++.+...+... |+ .+|..+++++.+..+. ++.++..+..++.+.|
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 7777777777777777777776643 23455566666555544 66 6677777777765433 5566667777777777
Q ss_pred CHHHHHHHHHHHHHcCCCccch
Q 043068 452 NVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 452 ~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
++++|.+.++++++.++..+.+
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHH
Confidence 7777777777777777654443
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-25 Score=207.06 Aligned_cols=438 Identities=18% Similarity=0.186 Sum_probs=360.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcC----------------------------ChhhHHHHHHHHHhCCC
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHH----------------------------TTPCYTAITDVLLSHSL 107 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~ 107 (526)
..+.+-+...||+++|++.-..+..++|....... ...+|..++.++-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 44556666689999999988888777665432211 12368888899989999
Q ss_pred HHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 043068 108 ISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSY-NSLLGVLVRVNSIKLAEEFFHQ 183 (526)
Q Consensus 108 ~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~ 183 (526)
++.|..+++.+...++. .|..+..++...|+.+.|.+.|.+..+.+ |+.... ..+...+...|++++|...|.+
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 99999999988766553 67788889999999999999999988776 554433 3344455567999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 043068 184 IVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-N 260 (526)
Q Consensus 184 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 260 (526)
.++.. |--...|..|...+-..|++..|++.|++. .+.|+ ...|-.|...|...+.+++|...|.+.... .| .
T Consensus 210 Ai~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 210 AIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 88875 555678999999999999999999999987 66776 558999999999999999999999998876 44 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING 340 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 340 (526)
...|..+...|...|.++.|+..|++..+.. +.-...|+.|..++-..|++.+|+..|.+.+..... ...+.+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5678888888999999999999999998764 445679999999999999999999999999987544 67788999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCCCH
Q 043068 341 FCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAKGRM 418 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~g~~ 418 (526)
|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..+++.+. +.|+. ..|+.+-..| +..|++
T Consensus 364 ~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~-ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY-KEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH-HHhhhH
Confidence 99999999999999998875 444 45789999999999999999999999998 67884 4566666665 445999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchh
Q 043068 419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISR 498 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 498 (526)
++|.+.+.+++..++. =....+.|...|...|+..+|++-+++.++..++.|+..-.+ ..-...-|.|.+.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl--------lh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL--------LHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH--------HHHHHHHhcccch
Confidence 9999999999975433 346889999999999999999999999999999999865443 2234456899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 043068 499 FVFVHQVVVIMERTVED 515 (526)
Q Consensus 499 ~~~~~~~~~~~~~~~~~ 515 (526)
.+.+.+.+++++..++.
T Consensus 510 d~~~~kl~sivrdql~~ 526 (966)
T KOG4626|consen 510 DKRMKKLVSIVRDQLEK 526 (966)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999843
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.2e-22 Score=194.46 Aligned_cols=303 Identities=13% Similarity=0.142 Sum_probs=206.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHc
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP--DVSTYTTMIRGYCKM 207 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 207 (526)
...+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+.+.+...+ ...++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345667888888888888877653 3456777788888888888888888888776531111 124567777778888
Q ss_pred CChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043068 208 GMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAK 281 (526)
Q Consensus 208 g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~ 281 (526)
|++++|.++|+++ . .+.+..++..++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888777 2 2345667777788888888888888888887766433221 23445666677777777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068 282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG 361 (526)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 361 (526)
..++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777776653 34455666677777777777777777777776543323455667777777777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHH
Q 043068 362 LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFT 438 (526)
Q Consensus 362 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~ 438 (526)
.|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..++.. .|+.+++..++++|++.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 355555566777777777777777777777663 47777777666665532 246777777777777665555544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1e-20 Score=208.11 Aligned_cols=394 Identities=13% Similarity=0.092 Sum_probs=308.9
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH-----HHH-------
Q 043068 59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD-----FFI------- 126 (526)
Q Consensus 59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~------- 126 (526)
...+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|...|++....++ ..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 45556689999999999999987663 355788999999999999999999987543221 111
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 127 -----SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 127 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
..+...+.+.|++++|+..|+++....+ .+...+..+..++...|++++|++.|+++++.. |.+...+..+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~ 426 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLA 426 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 1234567789999999999999998775 457788889999999999999999999999876 67788888888
Q ss_pred HHHHHcCChhhHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 202 RGYCKMGMIENAKKVFDVMTVK-P----------NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~~-p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (526)
..|. .++.++|..+++.+... + ....+..+...+...|++++|++.|++.++.... +...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 8875 46789999999876211 1 1223556778888999999999999999987433 56777889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK---------SYEVVINGF 341 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~ 341 (526)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998754 4556666666667788999999999998865433222221 233456778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068 342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a 421 (526)
...|+.++|+++++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~-g~~~eA 656 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ-GDLAAA 656 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHH
Confidence 899999999999872 24456677788899999999999999999998853 23466677777777665 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
++.++.+.+.... +..++..+..++.+.|++++|.++++++++..+..++
T Consensus 657 ~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 657 RAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999998875433 5677888899999999999999999999988765554
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.6e-21 Score=189.03 Aligned_cols=297 Identities=13% Similarity=0.142 Sum_probs=249.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCC------HHHHHHHHHHHH
Q 043068 164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN------LLAYNTMINGFC 237 (526)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~li~~~~ 237 (526)
....+...|++++|+..|.++.+.+ |.+..++..+...+...|++++|.++++.+-..|+ ...+..++..|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999986 77888999999999999999999999998822222 246788999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHHcCCHH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN----VSTHKSMLKGLCVVGKFD 313 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 313 (526)
+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998763 34678899999999999999999999999987653322 224566788889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
+|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987533 5678888999999999999999999999876322224578889999999999999999999998
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCC
Q 043068 394 QMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE---EGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 394 ~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~ 469 (526)
+. .|+...+..+...+.+. |++++|..+++++++. .|+...+..++..+.. .|+.+++..++++|+++++.
T Consensus 277 ~~--~p~~~~~~~la~~~~~~-g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQ-EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 85 47777777777777765 9999999999999875 6788899988887775 56999999999999987763
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.9e-19 Score=185.66 Aligned_cols=412 Identities=14% Similarity=0.112 Sum_probs=271.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 96 TAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
..++..+.+.|++++|..+++... +.++..+..++.+....|++++|+..|+++....+ .+...+..+...+.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence 344556667788888887776542 33444555666666778888888888888887764 44667777788888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 250 (526)
++++|...|+++.+.. |.+...+..++.++...|++++|...++.+ ...|+ ...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 8888888888888765 667778888888888888888888888766 22333 3333333 34777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH----HHHHHHHHHHcC
Q 043068 251 EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ----AVGYLRNVMEAN 326 (526)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 326 (526)
.+.+....++...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 87776433444555556677788888888888888887765 5567777788888888888875 788888888765
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068 327 MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT 406 (526)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 406 (526)
+. +...+..+...+...|++++|+..+++..+.. +-+...+..+..++.+.|++++|++.++.+.+. .|+...+..
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 44 66778888888888888888888888887753 223456667778888888888888888888764 355444333
Q ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCccchhhh---H
Q 043068 407 -IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY----SCLLKGYCEEGNVENVMQIAHEMVTKK-GRLLKLKNF---L 477 (526)
Q Consensus 407 -ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~---~ 477 (526)
+...+.. .|+.++|...++++++..+.--...| ..+-.++...+..++...-..++.-.+ ...++..+- .
T Consensus 357 ~~a~al~~-~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 435 (656)
T PRK15174 357 YAAAALLQ-AGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERRAKW 435 (656)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHHHHh
Confidence 2334444 48888888888888775433112222 233333333444433322223322111 112222221 3
Q ss_pred HHHHHHHHHHHHHhcCccchhHH----HHHHHHHHHHHHHhcCC
Q 043068 478 TRVVDALLLMWIVTGGSWISRFV----FVHQVVVIMERTVEDGK 517 (526)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~g~ 517 (526)
..++|..+..|..+-+..++.-. .+...-..++++.+.|.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~k 479 (656)
T PRK15174 436 GYLADNFLLDWLECRGEQADEPMYRLADISHVEQFFQRLQLDQR 479 (656)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHHHhhhhhHHHHHHHHHhcCC
Confidence 45778888888777666555322 22233333666665553
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-21 Score=179.68 Aligned_cols=375 Identities=17% Similarity=0.179 Sum_probs=312.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHH---HHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFI---SKLIKA 132 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~ 132 (526)
..+..+++..|+.+.|+.+++.+++..|+ ...+|..++.+|...|+.+.|...|......++..+ +-+...
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p~------fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 34678889999999999999999987662 345799999999999999999999998887776533 345556
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN 212 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 212 (526)
+-..|+..+|...|.++.+..+ --..+|..|...+-..|+...|++-|++.++.+ |.-...|..|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence 6678999999999999987663 236789999999999999999999999999876 5567899999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 213 AKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 213 A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
|...+.+. ...|+ ...+..+...|...|.+|-|++.|++.++.... =...|+.|..++-..|++.+|.+.|.+....
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999886 45554 567888999999999999999999999987332 3678999999999999999999999999876
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 043068 291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSF 369 (526)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 369 (526)
. +......+.+...|...|.+++|..+|....+..+. -...++.|...|-+.|++++|+..+++..+. .|+ ...|
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~ 425 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADAL 425 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHH
Confidence 4 555678899999999999999999999999886433 3457899999999999999999999999875 666 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 370 NAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
+.+-..|-..|+++.|++.+.+.+. +.|....-..=+..+.+..|++.+|+.-++..++..+. -+..|-.++.+.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 9999999999999999999999998 55775544444444457779999999999999985433 234565666554
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=4.1e-19 Score=187.07 Aligned_cols=410 Identities=10% Similarity=0.037 Sum_probs=309.6
Q ss_pred CChHHHH---HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHH
Q 043068 53 LGSNIVT---KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFI 126 (526)
Q Consensus 53 ~~~~~l~---~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 126 (526)
+++..|. .+....|+.++|++.+..+....| .....+..++..+.+.|++++|..++++.. +.++..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3444454 455668999999999998875333 223458899999999999999999999843 4456677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
..++..+...|++++|+..++++....+ .+.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 7888999999999999999999988764 4456 8888999999999999999999999987 7788888889999999
Q ss_pred cCChhhHHHHHHhCCCCCCHH------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----H
Q 043068 207 MGMIENAKKVFDVMTVKPNLL------AYNTMINGFC-----KKGEL---EEAKKCMNEMMNR-GCRPNEL-TYN----A 266 (526)
Q Consensus 207 ~g~~~~A~~~~~~~~~~p~~~------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~ 266 (526)
.|..++|.+.++.....|+.. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. .
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999999885454421 1122222222 22334 7889999998864 2233321 111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 043068 267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP---DVKSYEVVINGFCK 343 (526)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~ 343 (526)
.+.++...|++++|+..|+.+.+.+.+........+...|...|++++|+.+|+++.+..... .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 134556779999999999999887632122233336789999999999999999988764321 13456667778899
Q ss_pred cCChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHH
Q 043068 344 IGKSDEAISLLKEMRARGL-----------KPT---VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTII 408 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll 408 (526)
.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++.... |+ ...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 9999999999999987521 123 2245567788899999999999999998743 54 44555555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 409 CGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
..+.. .|+.++|++.+++.++..+. +...+..++..+.+.|++++|+.+++++++..++.+.+..+
T Consensus 401 ~l~~~-~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 401 SVLQA-RGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHh-cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55544 59999999999999986533 57788888889999999999999999999999988765555
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=6.9e-19 Score=182.08 Aligned_cols=389 Identities=14% Similarity=0.098 Sum_probs=272.9
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHc
Q 043068 59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGD 135 (526)
Q Consensus 59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 135 (526)
...+...|+++.|+..|+.++...|++ ..|..++.++.+.|++++|...+++.... ....+..+..+|..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDP-------VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344455677777777777777665532 24666777777777777777777765432 33466667777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH------------------
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY------------------ 197 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------ 197 (526)
.|++++|+..|......+...+.. ...++..+.. ..+........+.. +++...+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHccCCcchhh
Confidence 777777777776554433211111 1111111111 11111112221111 1110000
Q ss_pred ---------------HHHHHHH---HHcCChhhHHHHHHhC-C---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 198 ---------------TTMIRGY---CKMGMIENAKKVFDVM-T---VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 198 ---------------~~li~~~---~~~g~~~~A~~~~~~~-~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
..+...+ ...+++++|.+.|++. . ..| ....|+.+...+...|++++|+..|++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000000 1236788999999886 2 223 455788888999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068 255 RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY 334 (526)
Q Consensus 255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (526)
.... ....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++.++..+. +...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 6322 46688888999999999999999999998765 567889999999999999999999999999988644 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-------H-HHHH
Q 043068 335 EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-------V-SYNT 406 (526)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~-~~~~ 406 (526)
..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++|++.|++..+.. |+. . .++.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHH
Confidence 889999999999999999999998752 3356788999999999999999999999988742 321 1 1111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
.. .+....|++++|.+++++.++..+. +...+..+...+.+.|++++|++.|++..+....
T Consensus 514 a~-~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 AL-ALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 12 2223248999999999999887543 5567899999999999999999999999888653
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.4e-18 Score=189.51 Aligned_cols=405 Identities=13% Similarity=0.045 Sum_probs=274.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYG 134 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 134 (526)
..+++...|++++|++.|+.+....|..... ............++.++|...+++... .++.....+...+.
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~l-----a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDL-----AVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHH-----HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456777899999999999998765532110 111112222345888888888887553 34456778888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCC--------------------------------CChhh-------H--------------
Q 043068 135 DRGNVKAAIFWFHQAKQIENG--------------------------------ACLYS-------Y-------------- 161 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~-------~-------------- 161 (526)
..|++++|++.++++...... |+... +
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 889988888888876432210 00000 0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCH---HHH--------
Q 043068 162 NSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNL---LAY-------- 229 (526)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~-------- 229 (526)
......+...|++++|+..|++.++.. |.+..++..+..++.+.|++++|+..|++. ...|+. ..|
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 011344667789999999999998876 678888999999999999999999998886 333321 112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHH----
Q 043068 230 ----NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS---- 301 (526)
Q Consensus 230 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 301 (526)
......+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1224567788999999999999888743 256677778888889999999999998887653 233333322
Q ss_pred --------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 302 --------------------------------------MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 302 --------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
+...+...|++++|++.|++.++..+. +...+..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 233445678889999999988887554 66777888888999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC---------------------------
Q 043068 344 IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD--------------------------- 396 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------------------- 396 (526)
.|++++|+..++++.+... -+...+..+...+.+.|+.++|+..++.+....
T Consensus 508 ~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999998876521 122233223333344444444444444332110
Q ss_pred ------------CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 397 ------------CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 397 ------------~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
.+.+...+..+...+.. .|+.++|++.+++.++..+. +...+..++..|...|++++|++.++++.
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQ-RGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11233334444444444 49999999999999987554 78889999999999999999999999998
Q ss_pred HcCCCccchhh
Q 043068 465 TKKGRLLKLKN 475 (526)
Q Consensus 465 ~~~~~~~~~~~ 475 (526)
+..+..+....
T Consensus 665 ~~~p~~~~~~~ 675 (1157)
T PRK11447 665 ATANDSLNTQR 675 (1157)
T ss_pred ccCCCChHHHH
Confidence 88776555433
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.3e-19 Score=183.90 Aligned_cols=335 Identities=10% Similarity=0.044 Sum_probs=272.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
...++..+.+.|++++|+.+++......+. +...+..++.+....|++++|...|+++.+.. |.+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 345677788999999999999999877753 35566666777888999999999999999987 788899999999999
Q ss_pred HcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 206 KMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML 283 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (526)
+.|++++|...+++. ...| +...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999997 4444 5678888999999999999999999998776443 23333333 357889999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHH
Q 043068 284 MAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDE----AISLLKEMRA 359 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 359 (526)
++.+.+....++......+...+.+.|++++|...++++.+.++. +...+..+...+...|++++ |+..|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999877643344555566678899999999999999999987644 67888889999999999986 8999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH
Q 043068 360 RGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFT 438 (526)
Q Consensus 360 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 438 (526)
.. +.+...+..+...+.+.|++++|+..+++..+. .|+.. .+..+...+.. .|++++|...++++.+.++. +..
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQ-VGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcc-chH
Confidence 63 235668889999999999999999999999884 35543 44445555555 59999999999999986443 334
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.+..+..++...|+.++|...|++.++..++.+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 455567789999999999999999999988654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=6.5e-18 Score=174.84 Aligned_cols=389 Identities=11% Similarity=-0.008 Sum_probs=272.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG 134 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 134 (526)
+...+...|++++|+..++.++...|+ ...+|..++.++...|++++|...+.... ..+......++..+.
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPD------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL 239 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344556689999999999999987653 34568889999999999999988776432 222222222222221
Q ss_pred cCCCHHHHHHHHHHHHhc--------------C-------------CCCC-hhhHHHHHHHH---HhcCChhHHHHHHHH
Q 043068 135 DRGNVKAAIFWFHQAKQI--------------E-------------NGAC-LYSYNSLLGVL---VRVNSIKLAEEFFHQ 183 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~--------------~-------------~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~ 183 (526)
.......+...++.-... . ..+. ...+..+...+ ...+++++|.+.|+.
T Consensus 240 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 240 KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 111112222221110000 0 0000 00011111110 123689999999999
Q ss_pred HHHcCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068 184 IVKENVV-PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN 260 (526)
Q Consensus 184 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (526)
.++.+.. +.....|..+...+...|++++|+..|++. ...|+ ...|..+...+...|++++|+..|++.++... .+
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~ 398 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-ED 398 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 9976522 445678889999999999999999999987 44555 56888999999999999999999999988743 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING 340 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 340 (526)
...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.++..+. +...++.+...
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 7888999999999999999999999998875 567788888999999999999999999999886433 67889999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHh
Q 043068 341 FCKIGKSDEAISLLKEMRARGLKPTVF------SFNAVFRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCM 413 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 413 (526)
+...|++++|++.|++..+.....+.. .++.....+...|++++|.+++++..+.. |+. ..+..+...+..
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 999999999999999988763211111 12222233445799999999999988743 544 456667767666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
. |++++|.++|++..+.... ... ......+.+|.++..+..+..
T Consensus 555 ~-g~~~eAi~~~e~A~~l~~~-~~e--------~~~a~~~~~a~~~~~~~~~~~ 598 (615)
T TIGR00990 555 Q-GDVDEALKLFERAAELART-EGE--------LVQAISYAEATRTQIQVQEDY 598 (615)
T ss_pred c-cCHHHHHHHHHHHHHHhcc-HHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 5 9999999999999875322 111 122234556666666665553
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=9.8e-17 Score=166.02 Aligned_cols=405 Identities=9% Similarity=0.045 Sum_probs=290.2
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHc
Q 043068 59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGD 135 (526)
Q Consensus 59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~ 135 (526)
.-+..++|+++.|+..|+.+++..|... ...+ .++.++...|+.++|...+++...+++. ....++..|..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3355678999999999999998776421 1122 6777888889999999999988755433 33344668888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
.|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999998875 346777788888999999999999999998764 455555555555555666666888
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH------------------------------------------------
Q 043068 216 VFDVM-TVKP-NLLAYNTMINGFCKKGELEEA------------------------------------------------ 245 (526)
Q Consensus 216 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A------------------------------------------------ 245 (526)
.++++ ...| +...+..++.++.+.|-...|
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 88887 3334 344555555555554433333
Q ss_pred HHHHHHHHHc-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068 246 KKCMNEMMNR-GCRPNEL-TY----NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL 319 (526)
Q Consensus 246 ~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (526)
+.-++.+... +..|... .| .-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3333333331 1123211 11 2234567788999999999999998887667778889999999999999999999
Q ss_pred HHHHHcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHHHcC
Q 043068 320 RNVMEANM-----NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL-----------KPT--V-FSFNAVFRILVENG 380 (526)
Q Consensus 320 ~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~--~-~~~~~li~~~~~~g 380 (526)
+.+..... .++......|.-+|...+++++|..+++++.+... .|+ - ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99876531 22444457788899999999999999999987311 122 1 23445567788899
Q ss_pred CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043068 381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA 460 (526)
Q Consensus 381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 460 (526)
+..+|++.++++.... +-|......+...+ +..|...+|++.++.+....+. +..+....+.++...|++++|..+.
T Consensus 431 dl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~-~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTA-PANQNLRIALASIY-LARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999997743 23444444555444 4459999999999877765433 6778888888999999999999999
Q ss_pred HHHHHcCCCccchhhh
Q 043068 461 HEMVTKKGRLLKLKNF 476 (526)
Q Consensus 461 ~~m~~~~~~~~~~~~~ 476 (526)
+.+.+..|+.+...++
T Consensus 508 ~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 508 DDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHhhCCCchhHHHH
Confidence 9999999988765544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.2e-16 Score=168.56 Aligned_cols=370 Identities=11% Similarity=0.046 Sum_probs=277.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR 170 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (526)
-..-.+.+....|+.++|..++.+... .+...+..+...+...|++++|.++|++.....+ .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 345566778889999999999987653 3445688999999999999999999999987764 456777888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
.|++++|+..++++++.. |.+.. +..+..++...|+.++|...++++ ...| +...+..+...+...|..++|++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999999886 77788 999999999999999999999998 3344 555667788888899999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-hHH----HHHHHHHH
Q 043068 249 MNEMMNRGCRPNE------LTYNAMIYGLC-----INGRV---DEAKMLMAKMRLN-GFKDNVS-THK----SMLKGLCV 308 (526)
Q Consensus 249 ~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~ 308 (526)
++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 986654 2221 11222222222 22334 7788888888754 1223221 111 11345567
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDR 384 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~ 384 (526)
.|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|+++.+..... .......+..++.+.|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987642 332 22235778999999999999999987653111 13456677778899999999
Q ss_pred HHHHHHHcccCC-----------CCcCH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068 385 AILLLKQMPQMD-----------CLPNF---VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE 450 (526)
Q Consensus 385 a~~~~~~~~~~~-----------~~p~~---~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 450 (526)
|.++++.+.+.. -.|+. ..+..+...+.. .|+.++|++.+++++...+. +...+..+...+...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 999999988642 11232 123334444444 59999999999999987544 788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccch
Q 043068 451 GNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 451 g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
|++++|++.+++.++..|+.+..
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHH
Confidence 99999999999999999866653
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.6e-15 Score=158.70 Aligned_cols=175 Identities=10% Similarity=0.046 Sum_probs=105.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH--HHHHHHHHHHHcCCCHHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD--FFISKLIKAYGDRGNVKAA 142 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A 142 (526)
.|++++|+..|+.+++..|+. ..++..++..+.+.|++++|+..+++....++ ..+..++..+ +++++|
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhH
Confidence 599999999999999887743 45689999999999999999999998765444 2333322222 777788
Q ss_pred HHHHHHHHhcCCCC--------------------------------------ChhhHHH-HHHHHHhcCChhHHHHHHHH
Q 043068 143 IFWFHQAKQIENGA--------------------------------------CLYSYNS-LLGVLVRVNSIKLAEEFFHQ 183 (526)
Q Consensus 143 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~-li~~~~~~g~~~~A~~~~~~ 183 (526)
..+++++....+.. +..+... +...|.+.|++++|++++.+
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88887776655321 1111122 25566677788888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH-cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 184 IVKENVVPPDVSTYTTMIRGYCK-MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 184 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
+.+.+ +.+..-...|..+|.. .++ +++..+++. ..+.+...+..++..|.+.|+.++|.++++++
T Consensus 208 L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~-~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 208 ARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ-GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77765 3344434444444443 233 333333322 11223444444445555555555555444443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=2.9e-15 Score=158.43 Aligned_cols=399 Identities=13% Similarity=0.063 Sum_probs=254.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh-CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCC
Q 043068 59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS-HSLISIAASLLKNSNKLSDFFISKLIKAYGDRG 137 (526)
Q Consensus 59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 137 (526)
.+++...+++++|+..+..+.+..|.. ......+..++.. .++ +.+..++++....++..+..++..|.+.|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTLS------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 566777899999999999998876533 2235566677776 355 77777766443456777888888888899
Q ss_pred CHHHHHHHHHHHHhcCCC-CChhhH------------------------------HHHHHHHHhcCChhHHH--------
Q 043068 138 NVKAAIFWFHQAKQIENG-ACLYSY------------------------------NSLLGVLVRVNSIKLAE-------- 178 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~-------- 178 (526)
+.++|.+++.++...... |...+| -.++..+.+.++++.++
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 998888888776544221 111111 11123333334333333
Q ss_pred -------------------------------------------------------HHHHHHHH-cCCCCCCHHHHHHHHH
Q 043068 179 -------------------------------------------------------EFFHQIVK-ENVVPPDVSTYTTMIR 202 (526)
Q Consensus 179 -------------------------------------------------------~~~~~~~~-~~~~~~~~~~~~~li~ 202 (526)
++|++... .+....+.....-++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 22222222 0000112222234444
Q ss_pred HHHHcCC---hhhHHHH------------HH-------------hC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068 203 GYCKMGM---IENAKKV------------FD-------------VM-TV-KP--NLLAYNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 203 ~~~~~g~---~~~A~~~------------~~-------------~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (526)
.|.+.+. ..++..+ .. .. +. ++ +...|..+..++.. ++.++|+..|.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 4444433 1112111 00 00 11 22 44556666666655 67777888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 251 EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD 330 (526)
Q Consensus 251 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (526)
+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.++. +
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-D 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-c
Confidence 77665 355544444455556788888888888887543 444455666777888888888888888888876532 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH-HHH
Q 043068 331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT-IIC 409 (526)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-ll~ 409 (526)
...+..+.......|++++|+..+++..+. .|+...+..+..++.+.|++++|+..+++..+. .|+...+.. +-.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~ 651 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 333333344444568899999988888876 567778888888888899999999999888874 365444444 443
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
.+.. .|+.++|+..+++.++..+. +...+..+..++...|++++|+..+++.++..++...+...
T Consensus 652 aL~~-~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~ 716 (987)
T PRK09782 652 ALWD-SGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL 716 (987)
T ss_pred HHHH-CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence 4444 48899999999988886554 77888888889999999999999999998888866554433
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.5e-15 Score=155.72 Aligned_cols=374 Identities=12% Similarity=0.067 Sum_probs=276.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 96 TAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
..-+-...+.|+++.|...|++....++. ....++..+...|+.++|+..+++...... ........+...+...|
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcC
Confidence 33455678899999999999987643332 233888888999999999999999872211 22333333466888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
++++|+++|+++.+.. |.+...+..++..+...++.++|++.++++ ...|+...+..++..+...++..+|++.+++
T Consensus 117 dyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999987 778888889999999999999999999998 5667766775555555556777679999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------------
Q 043068 252 MMNRGCRPNELTYNAMIYGLCINGRVDEAKML------------------------------------------------ 283 (526)
Q Consensus 252 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~------------------------------------------------ 283 (526)
+.+.... +...+..++.+..+.|-...|+++
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9998432 455555566665555544333333
Q ss_pred HHHHHHc-CCCCCH-H----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 284 MAKMRLN-GFKDNV-S----THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 284 ~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
++.+... +-.|.. . +..-.+-++...|++.++++.|+.+...+.+.-..+-..+.++|...+++++|+.+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 2222221 111221 1 112345567788999999999999998876544557788999999999999999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-------------CCcCHHHHHHHHHHHHhcCCCHH
Q 043068 358 RARG-----LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD-------------CLPNFVSYNTIICGLCMAKGRMQ 419 (526)
Q Consensus 358 ~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~~~~~~ll~~~~~~~g~~~ 419 (526)
.... ..++......|..++...+++++|..+++++.+.. ..||-..+..+...+....|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 6642 12234446789999999999999999999998721 12344444444433333359999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 420 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
+|++.++++....+. |..+...+...+...|.+.+|++.++......++.....
T Consensus 434 ~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 434 TAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 999999999987655 899999999999999999999999999888887655433
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.4e-13 Score=137.24 Aligned_cols=415 Identities=10% Similarity=0.066 Sum_probs=264.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG 134 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 134 (526)
+.+.+..+|+++.|..+|..+.+..++. +.. .+.-++..+.+.|.++.+...|++.. +.+..+...|...|+
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDN--FVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCC--ccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 3445555667777777776666654432 111 24456666666777776666666543 222334445555555
Q ss_pred cCC----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHH
Q 043068 135 DRG----NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV----KENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 135 ~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 206 (526)
..+ ..+.|..++.+.....+ .|...|-.+..++...+- ..++.+|.... ..+ -++-....|.+...+..
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG-KQIPPEVLNNVASLHFR 464 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHH
Confidence 443 34555666665554442 455566555555544332 22244444332 222 23455667777777777
Q ss_pred cCChhhHHHHHHhC-C-----C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 043068 207 MGMIENAKKVFDVM-T-----V------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCI 273 (526)
Q Consensus 207 ~g~~~~A~~~~~~~-~-----~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 273 (526)
.|++.+|...|... + . .+++.+-..+...+-..++.+.|.++|...... .|. ...|-.++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 77777777777654 1 1 122223344555566666777777777777665 333 2233334333334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh---------
Q 043068 274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCK--------- 343 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~--------- 343 (526)
.+...+|..++....... ..++..++.+...+.+..++..|.+-|+.+.+. ...+|..+...|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 566777777777776544 566667777777888888888888766666553 223566666666665543
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHH
Q 043068 344 ---IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQD 420 (526)
Q Consensus 344 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~ 420 (526)
.+..++|+++|.+.++.. +-|...-|.+...++..|++.+|..+|.+..+... ....+|-.+...|... |++..
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~-~qy~~ 698 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ-GQYRL 698 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH-HHHHH
Confidence 245678999999888763 33677778888899999999999999999987542 2344566666666655 99999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHH
Q 043068 421 VEDLVDRMIRS-GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLL 486 (526)
Q Consensus 421 a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 486 (526)
|.++|+...+. ...-+..+...|.+++.+.|++.+|.+.+...+...+..+...-.++.+......
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999987665 3445788999999999999999999999999999999877665555554444433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.7e-13 Score=124.41 Aligned_cols=347 Identities=13% Similarity=0.202 Sum_probs=252.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 043068 114 LLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD 193 (526)
Q Consensus 114 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 193 (526)
++-+..+..+.++..+|.+.++-...+.|.++|++......+.+..+||.+|.+-.-. ...++..+|+... +.||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-MTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-cCCc
Confidence 4444556677899999999999999999999999998888888999999998765433 2268889998877 7999
Q ss_pred HHHHHHHHHHHHHcCChhhHHH----HHHhC---CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC--
Q 043068 194 VSTYTTMIRGYCKMGMIENAKK----VFDVM---TVKPNLLAYNTMINGFCKKGELEE-AKKCMNEMMN----RGCRP-- 259 (526)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~----~~~~~---~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p-- 259 (526)
..|+|+++.+..+.|+++.|.+ ++.+| |+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998877654 44444 899999999999999999887644 4445555443 22222
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC---HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 260 --NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN---VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD 330 (526)
Q Consensus 260 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (526)
|..-|...|..|....+.+.|.++..-+... -+.|+ ..-|..+....|+....+.-...|+.|+..-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 4556788889999999999999887766432 12232 23566788888999999999999999998888889
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H-----HHHHHH-------
Q 043068 331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG-EL--------D-----RAILLL------- 389 (526)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~-----~a~~~~------- 389 (526)
..+...++++....|.++-.-+++.+++..|...+...-.-++..+++.. +. . -|..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999998876655555555555555443 11 0 111111
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
.++.+..+. ....+...-.+.+. |+.++|.+++..+.+.+- .|......-+++.-.+..+...|..+++-|.+
T Consensus 513 ~R~r~~~~~--~t~l~~ia~Ll~R~-G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 513 IRQRAQDWP--ATSLNCIAILLLRA-GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHhccCC--hhHHHHHHHHHHHc-chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122233333 33444444445565 899999999888865542 22333344566666777888888888888877
Q ss_pred cCC
Q 043068 466 KKG 468 (526)
Q Consensus 466 ~~~ 468 (526)
.+.
T Consensus 590 ~n~ 592 (625)
T KOG4422|consen 590 FNL 592 (625)
T ss_pred cCc
Confidence 664
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3.1e-14 Score=124.76 Aligned_cols=314 Identities=13% Similarity=0.161 Sum_probs=231.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLL------AYNTMINGFCKKGELEE 244 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~ 244 (526)
.++.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++.+.+-..||.. ....|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 577888999999988876 6777888888899999999999999888874455532 34567777888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV----STHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
|+++|..+.+.|.- -......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999876432 4566778899999999999999999988877644432 244555666666788999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC
Q 043068 321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN 400 (526)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 400 (526)
+..+.+.+ .+..-..+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+.++....+..+.+.. +.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 99887655 5566667788899999999999999999988544445678889999999999999999999988743 33
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC---EEGNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
...-..+-...... .-.+.|..++.+-+. -.|+...+..|+..-. ..|...+...++++|+....+......+-
T Consensus 282 ~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~ 358 (389)
T COG2956 282 ADAELMLADLIELQ-EGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ 358 (389)
T ss_pred ccHHHHHHHHHHHh-hChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence 33333333332333 345566666555554 3678888888888654 35668888888888887665554444444
Q ss_pred HHHHHHHHHHHHHhcC
Q 043068 478 TRVVDALLLMWIVTGG 493 (526)
Q Consensus 478 ~~~~~~~~~~~~~~g~ 493 (526)
.|-..+....|..++|
T Consensus 359 ~CGF~a~~l~W~CPsC 374 (389)
T COG2956 359 NCGFTAHTLYWHCPSC 374 (389)
T ss_pred ccCCcceeeeeeCCCc
Confidence 4445555566666665
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=3.7e-13 Score=133.26 Aligned_cols=132 Identities=19% Similarity=0.275 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068 331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410 (526)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 410 (526)
...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|...|..++|++.|+..+. ..|+..--..-+..
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLAS 491 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHH
Confidence 3345555555555555555555555554442222344555555555555555555555555554 23443333333333
Q ss_pred HHhcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 411 LCMAKGRMQDVEDLVDRMI--------RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
+....|+.++|.+.++.+. ..+..|+..........+.+.|+.++-+.....|+
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333455555555555432 11223333344444444555555555444444443
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.7e-12 Score=127.23 Aligned_cols=395 Identities=13% Similarity=0.113 Sum_probs=267.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH----HHHHHHHHHHcCCCHHHHH
Q 043068 68 PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF----FISKLIKAYGDRGNVKAAI 143 (526)
Q Consensus 68 ~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~ 143 (526)
.+.|.+-|..+.++.|.. . ..+.--+.+....+++..|..+|++....++. ..-.+..++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~N--i----l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN--I----LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc--h----HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence 578888899888776532 1 11222334445567888888888874432222 2234456677888999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 144 FWFHQAKQIENGACLYSYNSLLGVLVRV---NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
..|.++.+.++ .++.++-.|...-... ..+..+..++...-..+ +.|+...+.|.+.|.-.|++..++++...+
T Consensus 220 ~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 220 LAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 99998888774 3444444443333322 34566777777777666 667788888888888899999888888776
Q ss_pred C----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 221 T----VK-PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE--LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK 293 (526)
Q Consensus 221 ~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (526)
- .. --...|..+..+|-..|++++|...|.+..+. .++. ..+.-+...|.+.|+++.+...|+.+.+.. +
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p 373 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-P 373 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-c
Confidence 1 11 12345778888888899999999998777765 3443 344567788888999999999999887764 6
Q ss_pred CCHHhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCC
Q 043068 294 DNVSTHKSMLKGLCVVG----KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR----ARGLKPT 365 (526)
Q Consensus 294 ~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~ 365 (526)
.+..+..++...|...+ ..+.|..++.+..+..+. |...|..+...+....-+ .++..|.... ..+..+.
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCC
Confidence 66777777877777765 567777777777776533 777888777777654443 3366665543 3454566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcccC---CCCcCH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 043068 366 VFSFNAVFRILVENGELDRAILLLKQMPQM---DCLPNF-----VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF 437 (526)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~-----~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 437 (526)
....|.+...+...|++++|...|...... ...+|. .|..-.+..+....++.+.|.++|...++.. |..
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~Y 529 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGY 529 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chh
Confidence 778888888888889999998888877653 122333 1222223333344578888888888888753 333
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068 438 -TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT 478 (526)
Q Consensus 438 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 478 (526)
..|--++......++..+|...++..+..+...|++..++.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G 571 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLG 571 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 23444443334457788888888888888888888777764
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=6.3e-13 Score=121.60 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=141.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068 274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL 353 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (526)
.|++++|.+.|++.....- .-+...-.+.-.+-..|+.++|++.|-++...- ..+......+.+.|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4677777777777764331 112222233445666778888888776655431 22566667778888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068 354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH 433 (526)
Q Consensus 354 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~ 433 (526)
+-+.... ++-|+.....|...|-+.|+-.+|.+.+-+--.. ++-+..+...|. +|+....-++++..+|++.-- +
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~-ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA-AYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH-HHHHhhHHHHHHHHHHHHHHh--c
Confidence 8776654 4557788899999999999999998876554431 334455555555 444444788999999998764 7
Q ss_pred CCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCccchhhhHHHH
Q 043068 434 NLDFTMYSCLLKGY-CEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRV 480 (526)
Q Consensus 434 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 480 (526)
+|+..-|..++..| .+.|++++|.++++....+.+...+-..|+-.+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 89999999887765 568999999999999999888776655555433
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.8e-12 Score=116.62 Aligned_cols=394 Identities=13% Similarity=0.116 Sum_probs=281.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKA 141 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 141 (526)
+++.+.|..+|++++.-. ..+...|...++.-.+++...-|+.++++.... -+..|...+.+=-..|++..
T Consensus 86 q~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 678889999999998532 234456889999999999999999999987632 23466666666677899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-
Q 043068 142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM- 220 (526)
Q Consensus 142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 220 (526)
|.++|++...-. |+..+|++.|+.-.+-+..+.|..+|+..+-. .|++.+|.-.++.-.+.|++..|.++|+..
T Consensus 160 aRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999987654 99999999999999999999999999999865 589999999999999999999999998876
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------------------
Q 043068 221 ---TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG---------------------------------------- 256 (526)
Q Consensus 221 ---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------------------- 256 (526)
+. .-+...+.+....-.++..++.|.-+|+-.++.=
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 21 1122233443333334445555555554433320
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHH-----HHH---HHcCCHHHHHHHHHHHH
Q 043068 257 ---CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV--STHKSML-----KGL---CVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 257 ---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li-----~~~---~~~g~~~~A~~~~~~~~ 323 (526)
-+-|-.+|--.++.-...|+.+...++|++++..- +|-. ..|...| -++ ....+++.+.++|+..+
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01133444445555556677888888888777542 3421 1122211 111 23567778888887777
Q ss_pred HcCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068 324 EANMNPDVKSY----EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP 399 (526)
Q Consensus 324 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 399 (526)
+. ++....|| ......-.++.++..|.+++...+ |..|-..+|...|..=.+.+++|.+..++++.++.+ |
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--P 468 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--P 468 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--h
Confidence 63 22233333 334444557788889999888766 558888999999999999999999999999999854 5
Q ss_pred C-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 400 N-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH-NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 400 ~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
. ..+|.... .+-...|+.+.|..+|+-+++... ......|.+.|+-=...|.+++|..+++++++.....+.+..|
T Consensus 469 e~c~~W~kya-ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 469 ENCYAWSKYA-ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred HhhHHHHHHH-HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 4 44454444 334456999999999999987632 2234577788887788999999999999999998766544444
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=4.2e-13 Score=130.81 Aligned_cols=284 Identities=10% Similarity=0.043 Sum_probs=176.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYN--TMINGFCKKGELEEAKK 247 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~--~li~~~~~~g~~~~A~~ 247 (526)
.|+++.|++......+.. +.....|........+.|+++.|.+.+.++ ...|+...+. .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 477777776666554432 111222333344446677777777777766 3344443222 23456667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHHHcCCHHHHHHHHH
Q 043068 248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS-------THKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777766433 45666667777777777777777777777665332221 22223333333444555555665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC
Q 043068 321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN 400 (526)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 400 (526)
.+.+.- +.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++++..+...+.. |+
T Consensus 254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~ 326 (398)
T PRK10747 254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GD 326 (398)
T ss_pred hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CC
Confidence 554432 336667777888888888888888888877764 444421 22334445588888888888877643 66
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
.......+..+|...|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|.+++++-+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555444444444555888888888888886 4577777778888888888888888888876553
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.2e-13 Score=123.50 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=170.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHH
Q 043068 239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGY 318 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (526)
.|++++|.+.|++.+...-.-....|+. .-.+-..|++++|++.|-++... +..+..+...+.+.|-...+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6889999999999887632222233333 23567889999999999887543 245677888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCC
Q 043068 319 LRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCL 398 (526)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 398 (526)
+.+.... ++.|......|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..- ++
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 9887765 4458888999999999999999999987765443 455788889999999999999999999998776 67
Q ss_pred cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043068 399 PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNV 453 (526)
Q Consensus 399 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 453 (526)
|+..-|..++..+.+..|++.+|.++++....+ ++-|.....-|++.+...|-.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 999999999999888899999999999998775 666999999999998887753
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=6.3e-13 Score=130.34 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=191.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHH
Q 043068 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNL--LAYNTMINGFCKKGELEEA 245 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A 245 (526)
...|+++.|.+.+.+..+.. +.....+-....++.+.|+.+.|.+.+++. ...|+. ...-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34678888888887776653 333445555567777778888888888775 223443 2333356777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHH---HHcCCHHHHHHHHHH
Q 043068 246 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH-KSMLKGL---CVVGKFDQAVGYLRN 321 (526)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~---~~~g~~~~A~~~~~~ 321 (526)
...++++.+.... +...+..+...+.+.|++++|.+.+..+.+.+.. +...+ ..-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888877533 5567777888888888888888888888877643 33222 1111111 223333333445555
Q ss_pred HHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068 322 VMEANMN---PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS---FNAVFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 322 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
+.+..+. .+...+..++..+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5544321 37778888888999999999999999988876 344331 111122233457788888888887763
Q ss_pred CCCcCHH--HHH-HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 396 DCLPNFV--SYN-TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 396 ~~~p~~~--~~~-~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
.|+.. .+. ++-..+.+ .|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 --~p~~~~~~ll~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMK-HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred --CCCChhHHHHHHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555 443 44444444 599999999999544444578888888999999999999999999987644
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.3e-12 Score=127.45 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=116.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 043068 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTY--TTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEE 244 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~ 244 (526)
.+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|.+.++++ .. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555554432 222111 12234445555555555555554 11 2234444455555555555555
Q ss_pred HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068 245 AKKCMNEMMNRGCRPNE-------LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG 317 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (526)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554333211 12222333333333344444444443222 13445555555555566666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068 318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC 397 (526)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 397 (526)
++++..+. .++... .++.+....++.+++++..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+ .
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~ 357 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--Q 357 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 55555553 222211 12222233455555666555555441 11333445555555666666666666666555 2
Q ss_pred CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068 398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI 429 (526)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 429 (526)
.|+...+..+...+... |+.++|.+++++.+
T Consensus 358 ~P~~~~~~~La~~~~~~-g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRL-HKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 35555555555444333 56666666555554
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.2e-12 Score=119.33 Aligned_cols=388 Identities=12% Similarity=0.069 Sum_probs=260.9
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCC
Q 043068 61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRG 137 (526)
Q Consensus 61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g 137 (526)
-+.+++.+++|+++++|++...|+...| |.....+|...|+++++.+...+....+|. .+..-..++-..|
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~epiF------YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDEPIF------YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCCchh------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445788999999999999988874333 666777777789999999888888777765 3444556777788
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-cC-CCCCCHHHHHHHHHHHHH---------
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVK-EN-VVPPDVSTYTTMIRGYCK--------- 206 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~li~~~~~--------- 206 (526)
++++|+.=..-..-.+.-.+..+--.+=+.+- ..|.+..++-.+ .+ .+-|+.....+....+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 88888643222111110011111111111111 112222222222 11 122333333322222211
Q ss_pred ----------------c---CChhhHHHHHHhC----CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 207 ----------------M---GMIENAKKVFDVM----TVKP--N---------LLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 207 ----------------~---g~~~~A~~~~~~~----~~~p--~---------~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
. ..+.+|...+.+- ...+ + ..+.......+.-.|+...|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 1233333333221 0011 1 112222223344578999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK 332 (526)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (526)
+.....++. .|-.+..+|....+.++..+.|.+..+.. +-++.+|.--...+.-.+++++|..-|++.+..++. +..
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 987544333 37777788999999999999999998876 667778888888888999999999999999988655 677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC---------HHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN---------FVS 403 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~~~ 403 (526)
.|..+..+..+.++++++...|++.+++ ++-.+.+|+.....+...+++++|.+.|+..++. .|+ ...
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence 8888888888999999999999999877 4445678999999999999999999999998762 233 222
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 404 YNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 404 ~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.-.++.. +-.+++..|.+++++.++.++. ....|..|...-.+.|+.++|+++|++....--
T Consensus 507 ~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVL--QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhh--chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222221 2238999999999999987655 567899999999999999999999998766543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.2e-15 Score=142.16 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=63.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIE-NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
...+...|++++|++++++..... ...+...|..+...+...++++.|.+.++++...+ +.+...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence 344444555555555553322111 11223333334444444455555555555555443 2233344444444 3445
Q ss_pred ChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 209 MIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG-CRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 209 ~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
++++|.++++.. ...++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555544443 222333444444455555555555555555544321 123444444555555555555555555555
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
..+.. |.+......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+.. +.|.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 54443 3334444555555555555555544444444432 1123334445555555555555555555554431 1244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
.....+..++.+.|+.++|.++.++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44445555555555555555554443
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.6e-11 Score=116.09 Aligned_cols=359 Identities=10% Similarity=0.033 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068 95 YTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV 171 (526)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (526)
|..-++.+.+.+.++.|+.++.... +.....|...+..=-..|..++-..+|+++...-+ .....|-...+.+-..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKA 597 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhc
Confidence 3333444444444444444444322 11222333333333334444444455554443332 2233344444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (526)
|++..|..++.+..+.. |.+...|...+.......+++.|..+|.+. ...|+...|.--+...--.+..++|+++++
T Consensus 598 gdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 55555555555555443 444455555555555555555555555544 233444444444444444455555555555
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 251 EMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP 329 (526)
Q Consensus 251 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 329 (526)
+.++. -|+ ...|..+...+-+.++++.|...|..-.+. ++-.+-.|..+...--+.|.+-.|..+++...-.+++
T Consensus 676 e~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 676 EALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 54443 222 233444444444455555554444433221 2333334444444444555555555555555544433
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 043068 330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC 409 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 409 (526)
+...|...|..-.+.|+.+.|..+..+..+. ++.+...|..-|...-+.++-....+.+++- .-|......+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHH
Confidence 4455555555555555555555555555443 2223344444444444444433333333322 234444555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.+... .+++.|.+.|.+.++.+.. .-.+|.-+...+.++|.-+.-.+++.+...-.|
T Consensus 826 lfw~e-~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 826 LFWSE-KKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHH-HHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 55544 6788888888888876543 456777777778888888888888877777666
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.7e-12 Score=115.30 Aligned_cols=335 Identities=13% Similarity=0.145 Sum_probs=248.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 043068 92 TPCYTAITDVLLSHSLISIAASLLKNSN----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV 167 (526)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 167 (526)
..+|..++.++++-...+.|.+++++.. +....+||.+|.+-.- ....++..+|......||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 3478999999999999999999999754 5667789988876543 3337889999999999999999999999
Q ss_pred HHhcCChhH----HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh-HHHHHHhC-----C-----CCC-CHHHHHH
Q 043068 168 LVRVNSIKL----AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN-AKKVFDVM-----T-----VKP-NLLAYNT 231 (526)
Q Consensus 168 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-----~-----~~p-~~~~~~~ 231 (526)
..+.|+++. |.+++.+|++.| +.|...+|..+|..+++.++..+ |..++.++ | +.| |...|..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999998865 467788888888 89999999999999999888755 44455443 1 223 4556788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRG----CRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
.++.|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-..+|+.|.-.-+-|+..+..-+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8888989999999998876554421 2333 23466788888999999999999999987777788888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--------h-----HHHHH-------HHHHHHCCCC
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG-KS--------D-----EAISL-------LKEMRARGLK 363 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~-------~~~m~~~~~~ 363 (526)
+..-.|.++-.-+++.+++..|...+...-.-++..+++.. .+ . -|..+ -.+|.+. .
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence 99999999999999999988875545544444555555443 11 0 01111 1223333 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-CCcCHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068 364 PTVFSFNAVFRILVENGELDRAILLLKQMPQMD-CLPNFVSYN---TIICGLCMAKGRMQDVEDLVDRMIRSGHN 434 (526)
Q Consensus 364 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~ll~~~~~~~g~~~~a~~~~~~~~~~~~~ 434 (526)
......+.++-.+.+.|+.++|.++|..+.+.+ -.|-....| -+++...+ ..+...|...++-|...+..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~-~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV-SNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCch
Confidence 445567888888999999999999999885432 223333444 55555444 47888999999988776544
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3e-15 Score=139.44 Aligned_cols=255 Identities=15% Similarity=0.201 Sum_probs=109.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068 97 AITDVLLSHSLISIAASLLKNSN-----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV 171 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (526)
.++.++.+.|++++|.+++++.. +.++..|..+...+...++++.|++.++++...+. .+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45777888889999998885432 23344566677777788999999999999887664 356677777777 788
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM----TVKPNLLAYNTMINGFCKKGELEEAKK 247 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (526)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+ ..+.+...|..+...+.+.|+.++|++
T Consensus 91 ~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988776653 46677788888899999999999998885 334577788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068 248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM 327 (526)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (526)
.|++.++.... |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+.++++..+.++
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999987332 57778888889999999999888888887664 56667788899999999999999999999888754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
. |......+..++...|+.++|.++.++..+
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 788888899999999999999998887653
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.1e-11 Score=122.93 Aligned_cols=357 Identities=14% Similarity=0.156 Sum_probs=263.3
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHcC
Q 043068 60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKN---SNKLSDFFISKLIKAYGDR 136 (526)
Q Consensus 60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~ 136 (526)
..+..+|+.++|..++..++++.|.. ..+|..|+.++-..|+.+++....-. ..+.+...|..+.....+.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRN------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 34445799999999999999987632 34599999999999999998775432 2345567899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-CHH----HHHHHHHHHHHcCChh
Q 043068 137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP-DVS----TYTTMIRGYCKMGMIE 211 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----~~~~li~~~~~~g~~~ 211 (526)
|++++|.-.|.++.+..+ ++...+-.-+..|-+.|+...|.+-|.++.... || |.. ..-..++.+...++-+
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999998885 555555566788999999999999999999875 33 222 2233456677778889
Q ss_pred hHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 043068 212 NAKKVFDVM----TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP---------------------------N 260 (526)
Q Consensus 212 ~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~ 260 (526)
.|.+.++.. +-..+...++.++..|.+...++.|......+......+ +
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999988876 223456678899999999999999999988887722222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI 338 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 338 (526)
... -.++-++......+....+.....+.. ...++..|.-+..+|...|++.+|+.+|..+......-+...|-.+.
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 222 122334445555555555555555555 34456678889999999999999999999999876666788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHccc--------CCCCcCHHHHHHHHH
Q 043068 339 NGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQ--------MDCLPNFVSYNTIIC 409 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~ 409 (526)
.+|...|.+++|.+.|+..... .|+ ...--.|...+.+.|+.++|.+.+..+.. .+..|+.........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999876 343 44555677778899999999999998653 123344444444444
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 043068 410 GLCMAKGRMQDVEDLVDRMI 429 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~ 429 (526)
.+... |+.++=..+...|+
T Consensus 535 ~l~~~-gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 535 ILFQV-GKREEFINTASTLV 553 (895)
T ss_pred HHHHh-hhHHHHHHHHHHHH
Confidence 44444 77766554444443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.9e-12 Score=124.73 Aligned_cols=289 Identities=10% Similarity=0.040 Sum_probs=161.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChhhH
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-VSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 213 (526)
..|+++.|.+.+.+..+..+. ....+-....++.+.|+++.|.+.+.+..+.. |.+ ..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 467777777777665554321 12333344455666677777777777765543 222 22333346666667777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHH
Q 043068 214 KKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN-AMIYGL---CINGRVDEAKMLMAKM 287 (526)
Q Consensus 214 ~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~~ 287 (526)
.+.++.+ ...| +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777666 2223 4556666777777777777777777777766544 222221 111111 2222223333344444
Q ss_pred HHcC---CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043068 288 RLNG---FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY-EVVINGFCKIGKSDEAISLLKEMRARGLK 363 (526)
Q Consensus 288 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 363 (526)
.+.. .+.+...+..++..+...|+.++|.+++++..+..+......+ ..........++.+.+++.+++..+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 3321 1136667777777777777777777777777775433211111 11112223346667777777766654 3
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 364 PTV---FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 364 p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
|+. ....++...+.+.|++++|.+.|+........|+...+..+...+... |+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~-g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA-GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 332 344566777777777777777777433222457777766666655544 777777777776543
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=6.6e-12 Score=110.41 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChhhH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD--VSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A 213 (526)
..+.++|+++|-+|.+.+. .+..+.-+|.+.|.+.|.++.|+++...+.++...+.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5688999999999987553 44666778889999999999999999999876432222 23456678889999999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 214 KKVFDVMTVKP--NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 214 ~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
+.+|..+-..| -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+++.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999983223 3456788999999999999999999999887655432 23455566666678899999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 043068 288 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF 367 (526)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 367 (526)
.+.. +..+..-..+.+.+...|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++.+..+.++.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 8765 455556667888899999999999999999999766666778899999999999999999999998873 3444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHC
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~ 431 (526)
.-..+...-....-.+.|..++.+-... .|+...+..++..-... .|...+-..++..|+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4455555555566677777777666653 49999999999754322 24566677777777754
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.1e-11 Score=112.31 Aligned_cols=290 Identities=11% Similarity=0.052 Sum_probs=198.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----CHHHHHHHHHHHHhcC
Q 043068 166 GVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----NLLAYNTMINGFCKKG 240 (526)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g 240 (526)
.++-...+.+++.+-.......| .+.+...-+....+.-...|++.|+.+|+++ ...| |..+|+.++-.-....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34445556677777777777766 5555555555666666777888888888877 1122 5666766654322211
Q ss_pred CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068 241 ELE-EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL 319 (526)
Q Consensus 241 ~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (526)
.+. -|..+++ -. +--+.|...+.+.|.-.++.++|..+|++..+.+ +.....|+.+.+-|....+...|.+-+
T Consensus 314 kLs~LA~~v~~---id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN---ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH---hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 111 1111111 11 1234566777777888888888888888888776 566778888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068 320 RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP 399 (526)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 399 (526)
+..++-++. |-..|-.|.++|.-.+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 888887654 88888888888888888888888888887652 2367788888888888889999988888888754 23
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
+...+..+...+-+. ++..+|.+.+++-++. |...+ ....--|..-+.+.+++++|.........-
T Consensus 465 e~~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred chHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 456777777776554 8888888888776652 33212 122222555567788888888776665544
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.3e-11 Score=109.21 Aligned_cols=374 Identities=13% Similarity=0.087 Sum_probs=263.5
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHH--HHHHHHHHcCC
Q 043068 60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFI--SKLIKAYGDRG 137 (526)
Q Consensus 60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~li~~~~~~g 137 (526)
-++...|....|...|..+....| ..-.+|..|.++.. ..+.+ ..+......+...+ -.+..+|....
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P------~~W~AWleL~~lit---~~e~~-~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYP------WFWSAWLELSELIT---DIEIL-SILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCC------cchHHHHHHHHhhc---hHHHH-HHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 334446667778887777765433 23345666555432 22222 22222222222211 13556677777
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChh-hHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV-PPDVSTYTTMIRGYCKMGMIE-NAKK 215 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~-~A~~ 215 (526)
..+++++-.+.....|...+...-+....+.-...++++|+.+|+++.+.... -.|..+|..++-.--...++. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88999998888888887555555555555666778999999999999987622 135677777664332221211 2333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN 295 (526)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 295 (526)
+++-=+. -..|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+.+-|....+...|.+-|+.+.+-. +.|
T Consensus 322 v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 322 VSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 3332233 3457778888899999999999999999988544 56789999999999999999999999999876 778
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043068 296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI 375 (526)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 375 (526)
-..|-.+.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|.+....|-. +...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 889999999999999999999999999987544 8899999999999999999999999999887643 66889999999
Q ss_pred HHHcCCHHHHHHHHHHccc----CC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043068 376 LVENGELDRAILLLKQMPQ----MD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE 450 (526)
Q Consensus 376 ~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 450 (526)
|-+.++.++|...|++.++ .| +.|...--...+..+....+++++|..+......- .
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~ 537 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------E 537 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------C
Confidence 9999999999999988765 22 22333333334445555557777776665554431 2
Q ss_pred CCHHHHHHHHHHHHHcC
Q 043068 451 GNVENVMQIAHEMVTKK 467 (526)
Q Consensus 451 g~~~~a~~~~~~m~~~~ 467 (526)
...++|..+++++.+..
T Consensus 538 ~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 538 TECEEAKALLREIRKIQ 554 (559)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 34566777776665543
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=8.8e-13 Score=126.78 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChh-hHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV-PPDVSTYTTMIRGYCKMGMIE-NAKK 215 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~-~A~~ 215 (526)
+.++|+..|++..... .-+.++...+..+|...+++++|+++|+.+.+.... ..+..+|.+.+--+-+.-... -|..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 5667788887744333 233466667777888888888888888887765311 224566666554332211111 1333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
+.+..+ -...+|-++.++|.-.++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+ ..
T Consensus 413 Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~ 484 (638)
T KOG1126|consen 413 LIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GV 484 (638)
T ss_pred HHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cC
Confidence 333333 24567888888888888888888888887765 33 56777777777788888888888888776 33
Q ss_pred CHHhHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068 295 NVSTHK---SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 371 (526)
Q Consensus 295 ~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 371 (526)
|+..|+ -+.-.|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|++++++......+ |+..--.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 444444 4666778888888888888888777654 5666666777777888888888888887765422 3333334
Q ss_pred HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC
Q 043068 372 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL 435 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p 435 (526)
-+..+...+++++|+..++++++ +.|+..+...++.-.++..|+.+.|..-|.-+.+..+++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 45556667888888888888877 567776666666666666788888888887777655443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1e-12 Score=126.40 Aligned_cols=288 Identities=12% Similarity=0.097 Sum_probs=224.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCC----CCHHHHHHHHHHHHhcCCHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVK----PNLLAYNTMINGFCKKGELEEAK 246 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~ 246 (526)
-+..+|...|..+.+. +..+..+...+.++|...+++++|+++|+.+ ... .+...|.+.+--+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 3567899999996555 3556688889999999999999999999998 222 267788887765433 2222
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 247 KCM-NEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 247 ~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
.++ +++.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 332 3333332 3368899999999999999999999999998764 447889999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
.+. +..+|--+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++....-.-...-|.
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 443 4556667788999999999999999999886422 56677778888999999999999999998744222223333
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
..--. .. .++.++|+..++++.+.-++ +..++..++..|.+.|+.+.|+.-|--+.+.+|.-.+
T Consensus 563 ~~~il-~~-~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASIL-FS-LGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHH-Hh-hcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 33222 23 38999999999999985333 5678889999999999999999999999888875443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=2.4e-09 Score=103.01 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=212.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHH
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSN--------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNS 163 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 163 (526)
.|..-+.+--.+|+.+.+.++++++. ..+-..|-.=...|-..|..-.+..+.......|+... ..+|+.
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~ 521 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD 521 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh
Confidence 34444444455666666555555421 22223333334444444444444444444444443211 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 043068 164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGE 241 (526)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~ 241 (526)
-...|.+.+.++-|..+|...++.. |.+...|...+..--..|..++...+|++. .++.....|-.....+...|+
T Consensus 522 da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 5556666666666666666666553 555556665555555556666666666665 333344455555556666677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN 321 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (526)
+..|..++.+..+.... +...|-..+..-.....++.|..+|.+.... .|+..+|.--+...--.+..++|.+++++
T Consensus 600 v~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 600 VPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 77777666666665433 5556666666666666666666666666543 35555555555555556666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF 401 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 401 (526)
.++.- +.-...|..+...+-+.++.+.|.+.|..-.+. ++-....|-.|...=-+.|.+-+|..++++..-.+ +-+.
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~ 753 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA 753 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc
Confidence 65542 112334555555666666666666655544433 12223344444555555666666666666655433 2344
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----------------------------CCCCCHHHHHHHHHHHHhCCC
Q 043068 402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRS-----------------------------GHNLDFTMYSCLLKGYCEEGN 452 (526)
Q Consensus 402 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~ 452 (526)
..|-..|..-.+. |+.+.|..+..++++. ...-|+.+.-.+...+....+
T Consensus 754 ~lwle~Ir~ElR~-gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 754 LLWLESIRMELRA-GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 5555555555554 6666666655555432 134466777778888888899
Q ss_pred HHHHHHHHHHHHHcCCCccchhhh
Q 043068 453 VENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 453 ~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
+++|.+-|.+.++.+++.-+.--+
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHH
Confidence 999999999999999876654333
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=7.3e-11 Score=107.16 Aligned_cols=281 Identities=12% Similarity=0.147 Sum_probs=191.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV--KPNLLAYNTMINGFCKKGELEEAKK 247 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~li~~~~~~g~~~~A~~ 247 (526)
.|++.+|+++..+-.+.+ +.....|..-+++.-..|+.+.+-.++.+. .. .++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 477888888777776665 444556666667777778888888877776 22 3455566666777777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 248 CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV-------STHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
-++++.+.+.. ..........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777776544 5566777778888888888888888888777755443 345555555555555555555665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCCc
Q 043068 321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM-DCLP 399 (526)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p 399 (526)
..... .+.+...-.+++.-+.+.|+.++|.++.++..+++..|+. .....+.+-++...-++..+.-.+. +..|
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 55443 2335555667777888888888888888888877665551 2223455667777766666665542 2223
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
..+.++- -+|..++.+.+|.+.|+..++ ..|+..+|+.+..++.+.|+..+|.++.++.+
T Consensus 329 --~L~~tLG-~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 --LLLSTLG-RLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred --hHHHHHH-HHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3334443 444555888888888887776 56788888888888888888888888888776
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1e-09 Score=99.80 Aligned_cols=285 Identities=10% Similarity=0.113 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
.|+|.+|.++..+..+.+..| ...|..-..+.-+.|+.+.+-..+.+..+.. -.++....-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 688888888888776666433 5556666677777888888888888887652 14566667777777888888888877
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 216 VFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-------LTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 216 ~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
-..++ +. +.+.........+|.+.|++.....++.+|.+.|.--++ .+|..+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 76665 22 345667777888888888888888888888888765443 3466666666555555555556665
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
.... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|.. ...-.+.+.++.+.-++..+.-.+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5332 2556667777888888889999998888888888766552 22234556777777777776655441 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
..+.+|-..|.+.+.|.+|.+.|+...+ ..|+..+|+.+-+++... |+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL-GEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence 6778888888888999999998887777 458888888888888765 8888888888877644
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=6.2e-08 Score=90.09 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=236.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSNKLSD---FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR 170 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (526)
.|...+.--...+.+..|++++++....+. ..|-..+.+=.+...+.-|..+++++...-+..| ..|-..+.+--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHH
Confidence 366666666778889999999998875543 3566778888889999999999999987654333 345555666677
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCM 249 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (526)
.|++..|.++|+...+- .|+...|++.|+.-.+-..++.|..++++. -+.|++.+|--.+..-.+.|+...|..+|
T Consensus 154 LgNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 89999999999999874 799999999999999999999999999997 55799999999999999999999999999
Q ss_pred HHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------------------
Q 043068 250 NEMMNR-GC-RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF----------------------------------- 292 (526)
Q Consensus 250 ~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------------------------------- 292 (526)
....+. |- .-+...|.+...--.++..++.|.-+|.-..+.-.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988764 11 11223344444433455666666666665554310
Q ss_pred --------CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH--------HHHHhcCChhHHHHHHH
Q 043068 293 --------KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV-KSYEVVI--------NGFCKIGKSDEAISLLK 355 (526)
Q Consensus 293 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~A~~~~~ 355 (526)
+-|-.+|--.+..-...|+.+...++|+..+..-++... ..|...| -.-....+.+.+.++++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222223333333334445555555555555443211111 0111111 11123345555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 356 EMRARGLKPTVFSFNAVFRIL----VENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 356 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
..++. ++-...||..+--+| .++.++..|.+++...+. .-|...+|...|..-.. .+.++.+..++++.++-
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElq-L~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQ-LREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 55542 222333443333222 355666666666666554 34666666666655433 36777777777777776
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
++. +..+|......=...|+.+.|..+|+-.+....
T Consensus 467 ~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 467 SPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred ChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 544 666777766666667777777777776665543
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.3e-10 Score=105.30 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..+...|...|++++|.+.++++....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence 344455555555555555555555544332 234445555555555555555555555555543 34444555555555
Q ss_pred HHcCChhhHHHHHHhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 205 CKMGMIENAKKVFDVM-T---VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA 280 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 280 (526)
...|++++|.+.+++. . .......+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555543 1 0111223333444444444444444444444433211 233333444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444444333 12233333333344444444444444333
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=9.2e-11 Score=119.55 Aligned_cols=249 Identities=13% Similarity=0.079 Sum_probs=145.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---------cCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK---------MGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKG 240 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g 240 (526)
+.+++|.+.|++.++.. |.+...|..+..++.. .+++++|...+++. ...| +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 34667777777777665 5556666655554432 23366777777665 3333 4556666666777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 241 ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
++++|...|++..+.+.. +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 777777777777766322 45566666777777777777777777776654 2223333334445556677777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCC
Q 043068 321 NVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQM-DCL 398 (526)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~ 398 (526)
++.+...+-+...+..+..++...|+.++|...+.++... .|+. ...+.+...|+..| ++|...++.+.+. ...
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7665532224445666666777777777777777776544 3332 23344444555555 3666666655441 122
Q ss_pred cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068 399 PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG 432 (526)
Q Consensus 399 p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~ 432 (526)
+....+..++.++ .|+-+.+..+ +++.+.|
T Consensus 507 ~~~~~~~~~~~~~---~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVA---HGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHH---HhhhHHHHHH-HHhhccc
Confidence 3333334444333 2555555554 6666554
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=2.5e-08 Score=95.94 Aligned_cols=405 Identities=10% Similarity=0.099 Sum_probs=268.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSNK-----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (526)
.|...+..+.++++....+..|++... .....|...+......|-++.++.+|.+..+.. +..-+-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 366777788899999999988887542 234478888888888999999999999988755 33466778888
Q ss_pred HhcCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHcCCh---hhHHHHHHhC-CCCCCH--HHHHHHHHHHH
Q 043068 169 VRVNSIKLAEEFFHQIVKENV-----VPPDVSTYTTMIRGYCKMGMI---ENAKKVFDVM-TVKPNL--LAYNTMINGFC 237 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~--~~~~~li~~~~ 237 (526)
++.+++++|.+.+..++.... -+.+...|..+.....+..+. -.+..+++.+ +.-+|. ..|..|.+-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999988764321 156777888888877775443 3345556655 333453 47899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcC----
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING----------------------RVDEAKMLMAKMRLNG---- 291 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~~~~---- 291 (526)
+.|++++|.++|++.++. ..+..-|+.+.++|+.-. +++-....|+.+...+
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 999999999999998876 224444555555554321 1222333344433221
Q ss_pred -------CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 292 -------FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP------DVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 292 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
-+.++..|..-+. +..|+..+-...|.+.... +.| -...|..+.+.|-..|+.+.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1223333333322 2356677777777777654 222 23468889999999999999999999988
Q ss_pred HCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-----------CCc------CHHHHHHHHHHHHhcCCCH
Q 043068 359 ARGLKPT---VFSFNAVFRILVENGELDRAILLLKQMPQMD-----------CLP------NFVSYNTIICGLCMAKGRM 418 (526)
Q Consensus 359 ~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~p------~~~~~~~ll~~~~~~~g~~ 418 (526)
+...+-= ..+|.....+=.+..+++.|+++.+...... .++ +...|...++.. ...|-+
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle-Es~gtf 493 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE-ESLGTF 493 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH-HHhccH
Confidence 6543211 2456666666678889999999988775411 111 122344444432 335888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchh
Q 043068 419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISR 498 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 498 (526)
+....+++++++..+. ++.+.-.....+..+.-++++.+++++ |+...+..+.+.....=+.-+..+-|+...|+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr----gI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER----GISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc----CCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 8999999999998776 666666666667778889999998865 44444444554433333334444556655544
Q ss_pred HHHHHHHHHHHHHHHhcCCccc
Q 043068 499 FVFVHQVVVIMERTVEDGKRSE 520 (526)
Q Consensus 499 ~~~~~~~~~~~~~~~~~g~~~~ 520 (526)
+-.+.++|++ ||+++
T Consensus 569 ------aRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 569 ------ARDLFEQALD-GCPPE 583 (835)
T ss_pred ------HHHHHHHHHh-cCCHH
Confidence 4567778876 88765
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.8e-10 Score=104.22 Aligned_cols=197 Identities=15% Similarity=0.163 Sum_probs=123.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMING 235 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~ 235 (526)
...+..+...+...|++++|.+.+++..+.. |.+...+..+...+...|++++|.+.+++. . .+.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4556667777777888888888888777664 556677777777777777777777777665 2 13344566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
+...|++++|.+.|++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777654211 123345555566666666666666666665543 3344455556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
|...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666655542 2244445555555556666666666555554
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=4.4e-10 Score=114.57 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=170.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 043068 191 PPDVSTYTTMIRGYCK-----MGMIENAKKVFDVM-TVKPN-LLAYNTMINGFC---------KKGELEEAKKCMNEMMN 254 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 254 (526)
+.+...|...+++... .+++++|.+.|++. ...|+ ...|..+..++. ..+++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 3455556555555322 13456788888776 44554 445555554443 22447888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068 255 RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSY 334 (526)
Q Consensus 255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (526)
.... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.++. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7433 56777777777888888888888888888765 556677778888888888888888888888887544 23333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH-HHHh
Q 043068 335 EVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC-GLCM 413 (526)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~ 413 (526)
..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++... .|+.......+. .++.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 3344456667888888888888765531213445666777778888888888888887653 355444444443 3333
Q ss_pred cCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 414 AKGRMQDVEDLVDRMIRSGH-NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
. | ++|...++.+.+..- .+....+ +-..|.-.|+.+.+... +++.+.+.
T Consensus 488 ~-g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 N-S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred c-H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2 4 577777766655311 1111112 33345556777766666 77777664
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.4e-10 Score=105.74 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=220.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.......-+...+++.+..++++...+..+ +....+..-|..+...|+..+-..+=.++++.. |....+|-++.--|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHH
Confidence 444556667788999999999999887775 667777777778889999988888888888885 88889999999999
Q ss_pred HHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 205 CKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAMIYGLCINGRVDEA 280 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a 280 (526)
.-.|+..+|.+.|.+. .+.|. ...|-.....|.-.|..|+|+..|...-+. |.. -+..| +.--|.+.++.+.|
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLA 399 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLA 399 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHH
Confidence 9999999999999987 33333 457888899999999999999998877654 322 12223 33467888999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068 281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA----N--MNPDVKSYEVVINGFCKIGKSDEAISLL 354 (526)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (526)
.++|.+..... |.|+.+.+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999988764 678888888888888899999999999887732 1 1114456888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068 355 KEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410 (526)
Q Consensus 355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 410 (526)
++..... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9988763 44788999999999999999999999999887 56888777777654
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2e-09 Score=100.08 Aligned_cols=195 Identities=10% Similarity=0.087 Sum_probs=147.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 384 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 384 (526)
.+.-.|+.-.|..-|+..+.....++ ..|.-+..+|...++.++.++.|.+....+.. ++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 34557889999999999998865533 33778888999999999999999999887533 56678887888888899999
Q ss_pred HHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 385 AILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
|..=|++.+. +.|+ ...|-.+-.+.++. +++++++..|++..++ ++--+..|+.....+...+++++|.+.|+..
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999988 4455 45666676677776 8999999999999886 6668899999999999999999999999999
Q ss_pred HHcCCCccchhhhHHH-HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHh
Q 043068 464 VTKKGRLLKLKNFLTR-VVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVE 514 (526)
Q Consensus 464 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 514 (526)
++.-++...+..--+- +..+.+.. .|. +.+.+++.++++|.+
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~------qwk---~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVL------QWK---EDINQAENLLRKAIE 531 (606)
T ss_pred HhhccccccccccchhhhhhhHhhh------chh---hhHHHHHHHHHHHHc
Confidence 9887752211111111 11222211 154 556677777777763
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=8.3e-08 Score=92.48 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHc
Q 043068 239 KGELEEAKKCMNEMMNRGCRPN------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVV 309 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 309 (526)
.|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+-.++-- ..+|..-..+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45555666666666554 2221 23466677777777888888888877765433221 34555555666667
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 310 GKFDQAVGYLRNVMEANMN-----------------PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV 372 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 372 (526)
.+++.|+++++......-. .+...|...++.-...|-++....+++++.+..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 7777777777665432111 12344555566666667777777777777765443 22222223
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHH
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAK--GRMQDVEDLVDRMIRSGHNLDFTMYSCL--LKGY 447 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~ 447 (526)
...+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+.. -+++.|..+|++.++ |.+|...-+-.| ...=
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 33344556677777777776653223443 23444443332221 357777777877777 555543322222 2222
Q ss_pred HhCCCHHHHHHHHHHHH
Q 043068 448 CEEGNVENVMQIAHEMV 464 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~m~ 464 (526)
.+.|-...|+.++++..
T Consensus 597 Ee~GLar~amsiyerat 613 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34577777777777743
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.4e-10 Score=100.82 Aligned_cols=235 Identities=9% Similarity=0.036 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (526)
-+-+..+|.+.|-+.+|.+.|+.-++. .|-+.||..|-++|.+..+++.|+.++.+-.+.- +.++....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 357889999999999999999988876 5566788889999999999999999999887653 5555555668888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (526)
.++.++|.++|+.+.+.... ++.....+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999987543 6777777888888999999999999999999976 788899999999999999999999
Q ss_pred HHHcccCCCCcCH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 389 LKQMPQMDCLPNF--VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 389 ~~~~~~~~~~p~~--~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
|++....--.|+. ..|..+-.... ..|++.-|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9887764333432 23443333323 349999999999999887655 7789999999999999999999999998888
Q ss_pred CCCc
Q 043068 467 KGRL 470 (526)
Q Consensus 467 ~~~~ 470 (526)
.+.-
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 7743
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=102.93 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=165.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
+.+.++|.+.|.+.+|.+-|+...+.. |-+.+|-.|-++|.+..++..|+.+|.+-++.- |.|+....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence 577888888888888888888776554 556677778888888888888888888887764 6666666677778888
Q ss_pred cCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 207 MGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM 284 (526)
Q Consensus 207 ~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (526)
.++.++|.++++.. + .+-++.....+...|.-.++.+-|+..|+++++.|+. +...|..+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888776 2 2335556666677777788888888888888888877 6777777777777788888888888
Q ss_pred HHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 285 AKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 285 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
++....--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77765433333 235556666666777777777777776666544 5566777776677777777777777766554
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=8.4e-09 Score=101.84 Aligned_cols=292 Identities=13% Similarity=0.140 Sum_probs=188.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG- 208 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 208 (526)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44557788888888888775433 32335566677788888899999999999988887 667777777776663332
Q ss_pred ----ChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068 209 ----MIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELE-EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 282 (526)
Q Consensus 209 ----~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (526)
+.+...++++++ ..-|.......+.-.+.....+. .+...+..+..+|++ .+|+.|-..|....+..-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 456666777766 22233332222222222222232 344556667777765 356666666665555555555
Q ss_pred HHHHHHHc----C----------CCCCH--HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 283 LMAKMRLN----G----------FKDNV--STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 283 ~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
++...... + -+|+. .++.-+...|-..|++++|++++++.+++.+. .+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55554322 1 12333 34456677888899999999999988887533 46778888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH------HH--HHHHHHHHhcCCCH
Q 043068 347 SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV------SY--NTIICGLCMAKGRM 418 (526)
Q Consensus 347 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~ll~~~~~~~g~~ 418 (526)
+.+|.+.++..+..... |-..=+..+..+.+.|++++|.+++......+..|-.. .| .-...++.+. |++
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~~~ 321 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-GDY 321 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-hhH
Confidence 99999999988877433 55555667778888999999999888887655433221 11 1122344554 788
Q ss_pred HHHHHHHHHHHH
Q 043068 419 QDVEDLVDRMIR 430 (526)
Q Consensus 419 ~~a~~~~~~~~~ 430 (526)
..|++.|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=3.3e-07 Score=88.67 Aligned_cols=388 Identities=14% Similarity=0.092 Sum_probs=215.7
Q ss_pred HhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCH
Q 043068 63 YEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNV 139 (526)
Q Consensus 63 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 139 (526)
...|+-++|....+..++.++ .+..||..++-++-..+.+++|...++.+.. .+...+.-|.-.=++.|++
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hcccchHHHHHHHHHHhccCc------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 345677777777776665332 2344677777666667777777777775442 2334444444444455666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH------HHHHHcCChhhH
Q 043068 140 KAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI------RGYCKMGMIENA 213 (526)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~A 213 (526)
+.......+..+..+ .....|..+..++.-.|+...|..+.++..+...-.|+...+.... ....+.|..++|
T Consensus 126 ~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 666665555554432 2244566666666667777777777777665442234544443322 233455666666
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHH
Q 043068 214 KKVFDVMT--VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY-GLCINGRVDEAK-MLMAKMRL 289 (526)
Q Consensus 214 ~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~-~~~~~~~~ 289 (526)
.+.+.... +......-.+-...+.+.+++++|..+|..++.+ .||...|...+. ++.+-.+.-++. .+|....+
T Consensus 205 le~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 205 LEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 66665541 1111222334455666777777777777777766 455555544333 332233333333 44444433
Q ss_pred cCCCCCHHhHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC---
Q 043068 290 NGFKDNVSTHKS-MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA----RG--- 361 (526)
Q Consensus 290 ~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~--- 361 (526)
. .|....-.. =++......-.+..-+++..+.+.|+++ ++..+...|-.-...+-..++.-.+.. .|
T Consensus 283 ~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 K--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred c--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 2 111111110 0111111122333444555666666543 233444444322222211111111111 11
Q ss_pred -------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 362 -------LKPTVF--SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI-ICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 362 -------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
-+|+.. ++-.++..+-+.|+++.|..+++..+.+ .|+.+-.-.+ .+.+ ...|.+++|..++++..+.
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~-kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF-KHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Confidence 134443 4455677888999999999999999985 4776544433 3444 4459999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+. +|..+-..-+.-..++.+.++|.++.......|.
T Consensus 435 D~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 53 4666655666777889999999999999988885
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.3e-12 Score=82.76 Aligned_cols=50 Identities=50% Similarity=1.013 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068 224 PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI 273 (526)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (526)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777763
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-07 Score=86.86 Aligned_cols=293 Identities=12% Similarity=0.078 Sum_probs=209.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLL-AYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 248 (526)
.++...|...+--+.....++.|+.....+..++...|+.++|+..|++. -+.|+.. ......-.+.+.|++++...+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 45555555555444444446788888999999999999999999999887 3344332 233334445678888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN 328 (526)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (526)
...+....-. ....|-.-........+++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|+......+.
T Consensus 289 ~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 289 MDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 8887765211 22233333344456678889999988887654 455566666667788889999999999988776433
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF-RILV-ENGELDRAILLLKQMPQMDCLPNFVSYNT 406 (526)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 406 (526)
+...|.-|+..|...|.+.+|...-+...+. +.-+..+...+- ..|. ....-++|.+++++... +.|+..---.
T Consensus 367 -rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 -RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVN 442 (564)
T ss_pred -hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHH
Confidence 7889999999999999999988877765543 122333433331 1221 22334788899988887 5588665555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.+.-+|...|+.+++..++++.+. ..||....+.|.+.+.....+++|+..|...+..+|...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 666667777999999999999886 577999999999999999999999999999999988554
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.6e-08 Score=93.71 Aligned_cols=287 Identities=10% Similarity=0.049 Sum_probs=213.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI 268 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (526)
..+.........-+...+++.+..++++.. ..+++...+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 445666666777778889999999988887 345666677777788889999888888888888773 33678888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 043068 269 YGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD 348 (526)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (526)
-.|.-.|+..+|.++|.+..... +.-...|..+...|.-.|..|+|...+...-+.-.. ....+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence 88888899999999999876543 233457888999999999999999988877654111 1112334455678889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC--CCCcC----HHHHHHHHHHHHhcCCCHHHHH
Q 043068 349 EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM--DCLPN----FVSYNTIICGLCMAKGRMQDVE 422 (526)
Q Consensus 349 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~ll~~~~~~~g~~~~a~ 422 (526)
.|.+.|.+.... .+-|+...+-+.....+.+.+.+|..+|+..... .+.+. ..+++.|-.. ++..+++++|+
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-YRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-HHHHhhHHHHH
Confidence 999999988765 2336677777777777788999999999877631 11122 2344555544 45569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHH
Q 043068 423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDA 483 (526)
Q Consensus 423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 483 (526)
..+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+...+...-+...+...++.
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999987655 889999999999999999999999999999988665555555444443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=2.1e-09 Score=104.71 Aligned_cols=234 Identities=16% Similarity=0.212 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHhC--------C-CC
Q 043068 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKE-----NVVPPDVSTY-TTMIRGYCKMGMIENAKKVFDVM--------T-VK 223 (526)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~--------~-~~ 223 (526)
.+...+...|...|+++.|+.+++..++. |...|.+.+. +.+...|...+++++|..+|+++ | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444555666666666666666555543 1012222222 22445555555555555555544 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Q 043068 224 PN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR-----GCR-PNE-LTYNAMIYGLCINGRVDEAKMLMAKMRLN---GF 292 (526)
Q Consensus 224 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~ 292 (526)
|. ..+++.|...|++.|++++|...+++..+. |.. |.. ..++.+...|+..+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 224455555555555555555554443321 111 111 11333444455555555555555443321 00
Q ss_pred -CC---CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 043068 293 -KD---NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN----M---NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR- 360 (526)
Q Consensus 293 -~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 360 (526)
+. -..+++.+...|...|++++|.+++++++... . .-....++.+...|.+.+.+++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 01 12344455555555555555555555444320 0 001223444444555555555555444443211
Q ss_pred ---CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 361 ---GL-KPT-VFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 361 ---~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
|. .|+ ..+|..|...|.+.|++++|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 11 011 234445555555555555555544443
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=2.4e-09 Score=104.40 Aligned_cols=234 Identities=16% Similarity=0.151 Sum_probs=178.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-C
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQI-----EN-GACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKE-----NVV-P 191 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~ 191 (526)
+...|...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++.+|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5666999999999999999999988765 10 13333 3445778899999999999999998752 211 2
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHhC--------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 043068 192 PDVSTYTTMIRGYCKMGMIENAKKVFDVM--------T-VKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNR---GCR 258 (526)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 258 (526)
.-..+++.|..+|.+.|++++|...+++. + ..|.+. .++.++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23467888889999999999998888765 1 223333 4667788899999999999999876553 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 043068 259 PN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN-----G--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME--- 324 (526)
Q Consensus 259 p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 324 (526)
++ ..+++.|...|...|++++|+++++++... | ..-....++.+...|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 457899999999999999999999988643 1 122245677899999999999999988876543
Q ss_pred -cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 325 -ANMN-P-DVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 325 -~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
.|+. | ...+|..|...|...|++++|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 2 34689999999999999999999998875
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=5.3e-10 Score=110.88 Aligned_cols=248 Identities=16% Similarity=0.199 Sum_probs=150.9
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCC
Q 043068 145 WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKP 224 (526)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 224 (526)
++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-+. .|.+...++.++.+....++.+.+. .|
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC--------CC
Confidence 4455666777788888888888888888887777 777776555 5667777888887777777777665 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHH-------cCCCCCHHHH--------------HHHHHHHHHcCCHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNE-MMN-------RGCRPNELTY--------------NAMIYGLCINGRVDEAKM 282 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~~~--------------~~li~~~~~~g~~~~a~~ 282 (526)
...+|..|..+|...||+.. ++..++ |.. .|+..-...+ ...+.-..-.|-++.+++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888877654 222221 211 1211111111 112222333445555555
Q ss_pred HHHHHHHcC-CCCCHHhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 283 LMAKMRLNG-FKDNVSTHKSMLKGLCVV-GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 283 ~~~~~~~~~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
++..+.... ..|.. .+++-+... ..+++-..+.+...+ .|+..+|..++..-...|+.+.|..++.+|.+.
T Consensus 161 ll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 554442111 01111 122222222 223333333333332 467778888888877888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068 361 GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM 413 (526)
Q Consensus 361 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 413 (526)
|++.+...|..|+.+ .++...+..+++.|.+.|+.|+..|+...+-....
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 887777777777766 67777777778888888888888887776655433
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=4.1e-08 Score=97.02 Aligned_cols=259 Identities=15% Similarity=0.166 Sum_probs=158.9
Q ss_pred HHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc--
Q 043068 200 MIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTY-NAMIYGLCIN-- 274 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~-- 274 (526)
....+...|++++|++.++.- ..-+| ..........+.+.|+.++|..+|..+++.+ |+...| ..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 344556677777777777665 22233 3445566677777777777777777777763 344444 3343333221
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 275 ---GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF-DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 275 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
.+.+....+|+++.+.- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+..-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24566667777665442 3322222222222221222 2344555566666654 2355555555544444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 043068 351 ISLLKEMRAR----G----------LKPTV--FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA 414 (526)
Q Consensus 351 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 414 (526)
.+++...... + -.|+. .++.-+...|...|++++|++++++.+++ .|+..-+..+-.-+.+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555554322 1 12333 34456677788899999999999988885 47755444444444455
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 415 KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.|++.+|.+.++...+.+.. |..+-+..+..+.+.|+.++|.+++......+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 69999999999999887766 777777788888999999999999988877664
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.6e-11 Score=80.51 Aligned_cols=49 Identities=45% Similarity=0.922 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILV 377 (526)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 377 (526)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=9.2e-09 Score=96.11 Aligned_cols=220 Identities=14% Similarity=0.024 Sum_probs=156.4
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 239 KGELEEAKKCMNEMMNRG-CRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
.+..+.++.-+.+++... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 346677778887777642 2222 3457777788889999999999999988765 56788899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
...|++..+..+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|.+.|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999887544 5677888888888999999999999998876 444332222223345567899999999765532
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS---GH--N-LDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
..|+...+ .+. .+ . .|+..++ +.++.+.+. .+ . .....|..+...+.+.|++++|+..|++.++.++
T Consensus 195 -~~~~~~~~-~~~-~~-~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 -LDKEQWGW-NIV-EF-Y-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CCccccHH-HHH-HH-H-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22332222 222 22 2 2555544 344544431 11 1 1345899999999999999999999999999886
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.2e-07 Score=85.06 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=206.4
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHH
Q 043068 154 NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNT 231 (526)
Q Consensus 154 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 231 (526)
.+-++.....+.+.+...|+.++|+..|++....+ |-+........-.+.+.|+.+....+...+ ..+-+...|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 34568889999999999999999999999998765 555555566666678889998888777766 22234555655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
-+......++++.|+.+-++.++.... +...|-.-.+.+...+++++|.-.|+..+... +-+...|.-++..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 666677789999999999998876433 45556555667888999999999999988764 5788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVI-NGF-CKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~ 388 (526)
+.+|.-.-+.....- .-+..+...+. ..+ ..-..-++|.++++.-... .|+- ...+.+...|...|..+.++.+
T Consensus 384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999988777665541 22455554442 222 2223457899999887765 5653 3567778889999999999999
Q ss_pred HHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068 389 LKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN 434 (526)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~ 434 (526)
++.... ..||....+.|-+.+... +.+++|.+.|..++..+++
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCcc
Confidence 999887 568998888888776554 8999999999999886554
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.5e-07 Score=91.29 Aligned_cols=195 Identities=14% Similarity=0.078 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENG-ACL-YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
.+..+...+...|+.+.+.+.+.+..+.... .+. .........+...|++++|.+++++..+.. |.+...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence 3444555555566666666666554433321 121 112222334556677888888877777664 555544442 21
Q ss_pred HHH----HcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 043068 203 GYC----KMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR 276 (526)
Q Consensus 203 ~~~----~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (526)
.+. ..+..+.+.+.++.. +..|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 222 234444444444432 22232 223344555666677777777777777665322 34555666666667777
Q ss_pred HHHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 277 VDEAKMLMAKMRLNGF-KDNV--STHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
+++|..++++...... .++. ..|..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777766654321 1121 223345566666666666666666654
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1e-06 Score=84.42 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHHh--cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH-HHHHHHHH
Q 043068 56 NIVTKVIYE--QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF-FISKLIKA 132 (526)
Q Consensus 56 ~~l~~~l~~--~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~ 132 (526)
+++..+-.. ++++++|++.-..++...|++. .++..-+-++++.++|++|..+++..+..... +| .+=.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKA 86 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHH
Confidence 444444333 6789999999999988766443 23455556778889999999988876643222 11 12333
Q ss_pred H--HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 133 Y--GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 133 ~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
| .+.+..++|+..++-... .+..+...-...+.+.|++++|.++|+.+.+.+
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3 468899999998883221 234466666778889999999999999998776
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.7e-08 Score=92.94 Aligned_cols=147 Identities=15% Similarity=0.068 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCC-CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068 138 NVKAAIFWFHQAKQIEN-GA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK 214 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (526)
..+.++.-+.++..... .| ....|..+...+.+.|+.++|...|++.++.. |.+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555543221 11 12345555556666666666666666666654 555666666666666666666666
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 215 KVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 215 ~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
+.|++. .+.| +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666655 3333 3445555666666666666666666666654 2222211111122233455666666665443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=3e-08 Score=83.87 Aligned_cols=208 Identities=14% Similarity=0.075 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.+...+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34455566777777777777777777665 555667777777777777777777777777776544 5566677777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQD 420 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~ 420 (526)
..|++++|...|++....-.-+ -..+|..+..+..+.|+.+.|...|++..+.. |+ ......+....... |++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~-~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKA-GDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhc-ccchH
Confidence 7777777777777776542111 23467777777777777777777777777643 33 23344444444454 77777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 421 VEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 421 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
|..+++.....+. ++.......|+.-.+.|+.+.+-+.=.++....|..+...+|
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 7777777776654 677777777777777777777777777776666655544443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.8e-08 Score=83.99 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
...|.-.|...|++..|..-+++.++.++ .+..+|..+...|-+.|+.+.|.+.|++.++.. |.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 44567778888888888888888887764 446677778888888888888888888888776 677778888888888
Q ss_pred HcCChhhHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068 206 KMGMIENAKKVFDVMTVKP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK 281 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (526)
..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888762222 2447777777888888888888888887776433 3455666777777788888888
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
.+++.....+ .++....-.-|..--..|+.+.+-+.=.++...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8887777666 377777666777777777777776665555544
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=8.5e-07 Score=79.70 Aligned_cols=362 Identities=13% Similarity=0.124 Sum_probs=199.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH--------------
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD-------------- 123 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 123 (526)
+..-..+.||+++|+..+..+....-.| ...+..++-...=-|.+.+|..+..+.+...-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAP------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCC------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 3444456899999999999887542111 11122222222223667777777665542110
Q ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHc
Q 043068 124 ---------------FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSL-LGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 124 ---------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
.---+|.......-.+++|+++|.+....+ |.-...|.- .-.|.+..-++-+.++++-.++.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 001123333333445677888888776544 444444433 33566777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHHc--CChhhHH--HHHHhC-------------------------CCCCCH-----HHHHHHH
Q 043068 188 NVVPPDVSTYTTMIRGYCKM--GMIENAK--KVFDVM-------------------------TVKPNL-----LAYNTMI 233 (526)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~~--g~~~~A~--~~~~~~-------------------------~~~p~~-----~~~~~li 233 (526)
- |.+....|..+....+. |+..+++ ++.+.. .+-|.. ..--.|+
T Consensus 215 ~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 F--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred C--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 3 55555666555444332 2222111 111110 011111 1122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCC-HHhHHHHHHH
Q 043068 234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR-------VDEAKMLMAKMRLNGFKDN-VSTHKSMLKG 305 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 305 (526)
--|.+.+++.+|..+.+++.-. .|-......+ ..+..|+ ..-|.+.|...-+++..-| ...-.++...
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeecccccHHHHHHHHhhcCCC--ChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 4566777888887776665321 2222222222 2222222 3445555555544443333 3345566777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHH
Q 043068 306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSF-NAVFRILVENGELDR 384 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~ 384 (526)
+.-..++++.+-.++.+..--...|...+ .+..+++..|++.+|+++|-++....++ |..+| ..|.++|.+.+.++-
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 77777888888777777665444344433 4677888888888888888777654444 44444 455677888888888
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY 440 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 440 (526)
|++++-++.. ..+..+...+|..-|-..+.+=-|.+.|+.+... .|++.-|
T Consensus 447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8877766654 2345566666655555557777777777777654 4455444
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=7.1e-07 Score=88.15 Aligned_cols=376 Identities=12% Similarity=0.092 Sum_probs=244.6
Q ss_pred CcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-ChhhHHH
Q 043068 88 YHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGA-CLYSYNS 163 (526)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 163 (526)
+..+...|..+.-.+...|+|+.+.+.|++..+. ....|..+...|...|.-..|+.+++........| +...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4456667888888888899999999999876532 34478888889999999999999998876555334 3444444
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHcCC-C--CCCHHHHHHHHHHHHHcC-----------ChhhHHHHHHhC----CCCC
Q 043068 164 LLGVLVR-VNSIKLAEEFFHQIVKENV-V--PPDVSTYTTMIRGYCKMG-----------MIENAKKVFDVM----TVKP 224 (526)
Q Consensus 164 li~~~~~-~g~~~~A~~~~~~~~~~~~-~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~----~~~p 224 (526)
.-..|.+ .+.++++++.-.+++...+ . ......|..+.-+|...- ...++.+.+++. +..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4455554 3677777777666665110 0 122345555555554321 133456666665 3344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
++..| +.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.- ..|-.....-++
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 44444 344466778999999999999988666688899998888889999999999988776431 111000000011
Q ss_pred HHHHcCCHHHHHHHHHHHH---------------------------------------------------HcC-------
Q 043068 305 GLCVVGKFDQAVGYLRNVM---------------------------------------------------EAN------- 326 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~---------------------------------------------------~~~------- 326 (526)
.-...++.++++.....+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 1111222222222111110 001
Q ss_pred ----CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068 327 ----MNPD------VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD 396 (526)
Q Consensus 327 ----~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 396 (526)
..|+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 0111 1234455667778888888888887776542 33455666666778888999999999988887
Q ss_pred CCcCH-HHHHHHHHHHHhcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 397 CLPNF-VSYNTIICGLCMAKGRMQDVED--LVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 397 ~~p~~-~~~~~ll~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
+.|+. ....++...+... |+..-|.. ++..+++.++. +...|..|...+.+.|+.+.|.+.|....+.....|
T Consensus 713 ldP~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cCCCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 44664 4455555555554 77666666 99999988766 889999999999999999999999999888776444
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=3.4e-07 Score=88.76 Aligned_cols=305 Identities=11% Similarity=0.061 Sum_probs=191.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV-STYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMIN 234 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~ 234 (526)
...|..+...+...|+.+.+.+.+....+......+. .........+...|++++|.+.+++. ...| +...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 5566677777777888888888887776654212222 22333445567789999999999886 2233 4444442 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068 235 GFCK----KGELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309 (526)
Q Consensus 235 ~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (526)
.+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 3333 3455555555544 1122333 3444566678889999999999999999876 56677888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 043068 310 GKFDQAVGYLRNVMEANMN-PDV--KSYEVVINGFCKIGKSDEAISLLKEMRARGL-KPTVFSF-N--AVFRILVENGEL 382 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~ 382 (526)
|++++|...+++..+.... ++. ..|..+...+...|++++|+.++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999998876432 232 3466788899999999999999999864422 1112111 1 233334444533
Q ss_pred HHHHHH--H-HHcccCC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhC
Q 043068 383 DRAILL--L-KQMPQMD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN--------LDFTMYSCLLKGYCEE 450 (526)
Q Consensus 383 ~~a~~~--~-~~~~~~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~ 450 (526)
+.+.+. + ....... .............++... |+.++|..+++.+...... ......-....++...
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333332 1 1111110 011111112333344444 8999999999988663211 0122333344456789
Q ss_pred CCHHHHHHHHHHHHHcC
Q 043068 451 GNVENVMQIAHEMVTKK 467 (526)
Q Consensus 451 g~~~~a~~~~~~m~~~~ 467 (526)
|+.++|.+++...+...
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888766
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.11 E-value=2.9e-08 Score=98.93 Aligned_cols=241 Identities=16% Similarity=0.180 Sum_probs=148.9
Q ss_pred cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068 118 SNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY 197 (526)
Q Consensus 118 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 197 (526)
+..|+-++|..+|..|+..|+.+.|- +|.-|...........++.++.+....++.+.+. .|...||
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDty 86 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTY 86 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHH
Confidence 33555567777777777777777666 6666665555455666666666666666655443 3556677
Q ss_pred HHHHHHHHHcCChhh---HHHHHHhC-------C-------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 198 TTMIRGYCKMGMIEN---AKKVFDVM-------T-------------VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 198 ~~li~~~~~~g~~~~---A~~~~~~~-------~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
+.|..+|...||+.. +.+.++.+ | +.| ....-.+.+......|-++.+++++..+-
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 777777777776543 22211111 1 011 01111233344445566666666665543
Q ss_pred HcC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068 254 NRG-CRPNELTYNAMIYGLCINGR-VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV 331 (526)
Q Consensus 254 ~~g-~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 331 (526)
... ..|..+ .++-+..... +++-..+.....+ .++..++.+.++.-...|+.+.|..++.+|.+.|...+.
T Consensus 167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 221 111111 2333333322 3333333333332 588889999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
.-|-.|+.+ .++...++.+++-|.+.|+.|+..|+.-.+..+..+|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 766666655 78888888888999999999999988888777777555
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=2.1e-06 Score=83.31 Aligned_cols=384 Identities=11% Similarity=0.081 Sum_probs=251.4
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKA 141 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 141 (526)
.+.+...+++.+.+++..|.. ..+....+-.+...|+-++|...++.+... +.+-|..+.-.+....++++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 677888899998888765432 223455566677789999999999877643 44567788888888899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-
Q 043068 142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM- 220 (526)
Q Consensus 142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 220 (526)
|+++|..+...+. .|...|.-+.-.-.+.|+++.....-.++.+.. +.....|..++.++.-.|+...|..++++.
T Consensus 94 aiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 94 AIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988774 567888877777888899998888888888775 667788999999999999999999998887
Q ss_pred ---CCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 221 ---TVKPNLLAYNTMI------NGFCKKGELEEAKKCMNEMMNRGCRPNELTY-NAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 221 ---~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
.-.|+...|.-.. ....+.|..++|.+.+..-... ..|-..+ ..-...+.+.+++++|..++..+...
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 1235655554332 3456678888888877665443 2233333 34556678899999999999999877
Q ss_pred CCCCCHHhHHH-HHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068 291 GFKDNVSTHKS-MLKGLCVVGKFDQAV-GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368 (526)
Q Consensus 291 ~~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 368 (526)
. ||..-|.. +..++.+-.+.-+++ .+|....+.-.. ....-..=++......-.+..-+++..+.+.|+++-
T Consensus 249 n--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v--- 322 (700)
T KOG1156|consen 249 N--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV--- 322 (700)
T ss_pred C--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---
Confidence 4 55555444 444444444444444 556555443111 111111111111112233445566677777776542
Q ss_pred HHHHHHHHHHcCCHH---H-HHHHHHHcccCC----------CCcCHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068 369 FNAVFRILVENGELD---R-AILLLKQMPQMD----------CLPNFVSYN--TIICGLCMAKGRMQDVEDLVDRMIRSG 432 (526)
Q Consensus 369 ~~~li~~~~~~g~~~---~-a~~~~~~~~~~~----------~~p~~~~~~--~ll~~~~~~~g~~~~a~~~~~~~~~~~ 432 (526)
+..+...|-.-...+ + +..+...+...| -.|....|+ .++..+-+. |+++.|+.+++..+++
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDLAIDH- 400 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhcc-
Confidence 333333332211111 1 111122221111 135555444 445555554 9999999999999974
Q ss_pred CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 433 HNLDF-TMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 433 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.|+. ..|..-.+.+...|+.++|...+++..+.+-
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 4553 4676777889999999999999999988875
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.6e-06 Score=95.04 Aligned_cols=369 Identities=12% Similarity=0.021 Sum_probs=229.9
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068 99 TDVLLSHSLISIAASLLKNSNKLSDF--FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL 176 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (526)
+..+...|.+.+|.......+..... ............|+++.+..+++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 44455566666666555554433221 1222334455678888888887765321111223333444556677899999
Q ss_pred HHHHHHHHHHcCC-C----CCC--HHHHHHHHHHHHHcCChhhHHHHHHhC-C-CC-CC----HHHHHHHHHHHHhcCCH
Q 043068 177 AEEFFHQIVKENV-V----PPD--VSTYTTMIRGYCKMGMIENAKKVFDVM-T-VK-PN----LLAYNTMINGFCKKGEL 242 (526)
Q Consensus 177 A~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~-p~----~~~~~~li~~~~~~g~~ 242 (526)
|..++......-. . ++. ......+...+...|++++|...+++. . .. .+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999988754310 0 111 122233445566799999999998875 1 11 11 13456667778889999
Q ss_pred HHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC---CHHhHHHHHHHHHHcC
Q 043068 243 EEAKKCMNEMMNRGCR-----PNELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKD---NVSTHKSMLKGLCVVG 310 (526)
Q Consensus 243 ~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g 310 (526)
++|...+.+.....-. ....++..+...+...|++++|...+++.... +... ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999999888653111 11234556677788999999999999887542 2111 2234555667778889
Q ss_pred CHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHHcC
Q 043068 311 KFDQAVGYLRNVMEAN--MNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-TVFSF-----NAVFRILVENG 380 (526)
Q Consensus 311 ~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g 380 (526)
++++|...+++..... ..+ ....+..+...+...|++++|...+.+........ ....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 9999999998876531 111 23345556678889999999999998875421110 11111 11224455689
Q ss_pred CHHHHHHHHHHcccCCCCcCHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCC
Q 043068 381 ELDRAILLLKQMPQMDCLPNFV---SYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD-FTMYSCLLKGYCEEGN 452 (526)
Q Consensus 381 ~~~~a~~~~~~~~~~~~~p~~~---~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~ 452 (526)
+.+.|.+++............. .+..+...+... |+.++|...+++.... |..++ ..+...+..++.+.|+
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 9999999988766522111111 122333444444 9999999999988764 33322 3467777888999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 043068 453 VENVMQIAHEMVTKKG 468 (526)
Q Consensus 453 ~~~a~~~~~~m~~~~~ 468 (526)
.++|...+.+.++...
T Consensus 747 ~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 747 KSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988764
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=2.7e-06 Score=84.23 Aligned_cols=382 Identities=12% Similarity=0.067 Sum_probs=232.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
++..|..|.-+....|+++.+.+.|++...... .....|+.+...+...|.-..|..+++.......-|++...+-...
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 556777777778888888888888888765433 3456778888888888888888888877665432244444444444
Q ss_pred HHHHH-cCChhhHHHHHHhC----C---CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCC-CCH
Q 043068 202 RGYCK-MGMIENAKKVFDVM----T---VKPNLLAYNTMINGFCKK-----------GELEEAKKCMNEMMNRGCR-PNE 261 (526)
Q Consensus 202 ~~~~~-~g~~~~A~~~~~~~----~---~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~-p~~ 261 (526)
..|.+ .+.+++++.+-.+. + -.-....|..+.-+|... ....++++.+++..+.+.. |+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 44443 35555555544443 1 011233444444444331 2245677777887776433 333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN------------- 328 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------- 328 (526)
..|.++ -|+..++++.|.+...+..+.+-..+...|..++-.+.-.+++.+|+.+.+...+.-..
T Consensus 481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 333333 56777889999999998888755778888888888888889999999888877654111
Q ss_pred ------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HCC---------C
Q 043068 329 ------PDVKSYEVVINGFCK-----------------------IGKSDEAISLLKEMR--------ARG---------L 362 (526)
Q Consensus 329 ------~~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~--------~~~---------~ 362 (526)
--..|...++..+-. .++..+|.+..+.+. ..| .
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 001122222222210 001111111111110 001 0
Q ss_pred C--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068 363 K--PT------VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN 434 (526)
Q Consensus 363 ~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~ 434 (526)
. |+ ...|......+.+.++.++|...+.+..+.. .-....|...-..+.. .|..++|.+.|...+..++.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~-~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV-KGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH-HHhhHHHHHHHHHHHhcCCC
Confidence 0 11 1123344556777888888887777776632 1223333333233333 48999999999998876544
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Q 043068 435 LDFTMYSCLLKGYCEEGNVENVMQ--IAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERT 512 (526)
Q Consensus 435 p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 512 (526)
++....++..++.+.|+..-|.. ++..+++.++..+.+.-++ |+..... +..+++.+-..-|
T Consensus 717 -hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L--------------G~v~k~~-Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 717 -HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL--------------GEVFKKL-GDSKQAAECFQAA 780 (799)
T ss_pred -CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH--------------HHHHHHc-cchHHHHHHHHHH
Confidence 66788999999999998888877 9999999999777654444 3333222 3355777777766
Q ss_pred H--hcCCcccceec
Q 043068 513 V--EDGKRSECLIV 524 (526)
Q Consensus 513 ~--~~g~~~~~~~~ 524 (526)
+ ++-+++.+++.
T Consensus 781 ~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 781 LQLEESNPVLPFSN 794 (799)
T ss_pred HhhccCCCcccccc
Confidence 6 77777777654
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=1.2e-06 Score=78.47 Aligned_cols=193 Identities=9% Similarity=0.144 Sum_probs=103.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
+.-.|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++...+.... ++.++--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHH
Confidence 334455555555555555443 445555555555555555555555555544443222 333444444455555555555
Q ss_pred HHHHHHHHHCCCCCCHH----HHHHH---------HHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHH--HHHHHHh
Q 043068 351 ISLLKEMRARGLKPTVF----SFNAV---------FRILVENGELDRAILLLKQMPQMDCLPN--FVSYNT--IICGLCM 413 (526)
Q Consensus 351 ~~~~~~m~~~~~~p~~~----~~~~l---------i~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~--ll~~~~~ 413 (526)
+...++..+. .||.. .|..| +......++|.++++..+...+.. |. ...++. ++..+.+
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--Ccccceeeeeeheeeeccc
Confidence 5555555543 33321 11111 112345566777777666666533 33 222221 2222233
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 414 AKGRMQDVEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
..|++.+|++...+.++. .| |..++---..+|.-...++.|+.-|++..+.+....
T Consensus 319 ~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 447777888777777763 33 366777777777777777888888877777776543
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.6e-06 Score=80.14 Aligned_cols=361 Identities=11% Similarity=0.089 Sum_probs=198.4
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068 99 TDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK 175 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (526)
++.+.+++.+++|.....+.. +.+...+..-+-+..+.++|++|+.+.+.-..... .+...| .-.-+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~f-EKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFF-EKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhH-HHHHHHHHcccHH
Confidence 566778899999988777533 34455677777788899999999966554221110 111111 1223445789999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCC----------------------------
Q 043068 176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPN---------------------------- 225 (526)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~---------------------------- 225 (526)
+|+..++-.- +.+..+...-...+.+.|++++|..+|+.+ . ..++
T Consensus 97 ealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 97 EALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 9999888321 334557777778889999999999999987 1 0000
Q ss_pred HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 226 LLAYNTM---INGFCKKGELEEAKKCMNEMMNRG-------CRPNEL-------TYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 226 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
..+|..+ .-.+...|++.+|++++....+.+ -.-+.. .-..+.-.+-..|+.++|..+|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1123222 234455788888888887773321 111111 11234445667788888888888887
Q ss_pred HcCCCCCHH----hHHHHHHHHHHcCCHH-HHHHHHHH----------------------------------------HH
Q 043068 289 LNGFKDNVS----THKSMLKGLCVVGKFD-QAVGYLRN----------------------------------------VM 323 (526)
Q Consensus 289 ~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~----------------------------------------~~ 323 (526)
+.. ++|.. .-|.++..-....-++ .++..++. ..
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 765 33331 1122221110000000 00000000 00
Q ss_pred Hc--CCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------H
Q 043068 324 EA--NMNPDVKSYEVVINGF--CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLK--------Q 391 (526)
Q Consensus 324 ~~--~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~ 391 (526)
.. +..|. ..+.+++... ++...+.+|.+++...-+....-...+.-..+......|+++.|++++. .
T Consensus 331 a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 ASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 11111 1222222222 1222355666666665544211123455566677788999999999998 5
Q ss_pred cccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 392 MPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS--GHNLDF----TMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 392 ~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
+.+.+..|-. ...+...+.+. ++.+.|..++.+.+.. .-.+.. .++.-+...-.+.|+-++|..+++++++
T Consensus 410 ~~~~~~~P~~--V~aiv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 ILEAKHLPGT--VGAIVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhccChhH--HHHHHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 5554444444 44444445554 5656666666655532 011122 2333344444678999999999999999
Q ss_pred cCCCcc
Q 043068 466 KKGRLL 471 (526)
Q Consensus 466 ~~~~~~ 471 (526)
.++.+.
T Consensus 487 ~n~~d~ 492 (652)
T KOG2376|consen 487 FNPNDT 492 (652)
T ss_pred hCCchH
Confidence 876443
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.1e-06 Score=81.62 Aligned_cols=357 Identities=15% Similarity=0.091 Sum_probs=197.2
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCC
Q 043068 61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRG 137 (526)
Q Consensus 61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 137 (526)
.....||++.|+..|..++...|. +...|..-..++.+.|+|++|.+--.+.... .+..|+....++.-.|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 445679999999999999988764 2234777788889999999998877765543 3558999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHH------
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN---SIKLAEEFFHQIVKENV--VPPDVSTYTTMIRGYCK------ 206 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~------ 206 (526)
++++|+..|.+-++..+ .+...++.+..++.... +.-.--.++..+..... .......|..++..+-+
T Consensus 85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999887763 44566666666662110 00000011111100000 00000112222222111
Q ss_pred ----cCChhhHHHHHHhC---------------CCCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 043068 207 ----MGMIENAKKVFDVM---------------TVKP------------N----------LLAYNTMINGFCKKGELEEA 245 (526)
Q Consensus 207 ----~g~~~~A~~~~~~~---------------~~~p------------~----------~~~~~~li~~~~~~g~~~~A 245 (526)
...+..|.-.+... +..| | ..-...+.+...+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111100 0011 1 11245677778888888899
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHH-------HHHHHHHHcCCHHHHHHH
Q 043068 246 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHK-------SMLKGLCVVGKFDQAVGY 318 (526)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~ 318 (526)
++-+....+.. -+..-++....+|...|.+.++....+...+.|. -...-|+ .+..+|.+.++++.|+..
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 98888888764 3555566777788888888887777777666552 2222222 233466667788888888
Q ss_pred HHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 319 LRNVMEANMNPDVKSYE-------------------------VVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF 373 (526)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 373 (526)
|.+.......|+...-. .-...+.+.|++..|++.|.+++.+. +-|...|....
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 88776654443322110 01223445555555555555555543 22445555555
Q ss_pred HHHHHcCCHHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 374 RILVENGELDRAILLLKQMPQMDCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
-+|.+.|.+..|++=.+..++. .|+. ..|..-..++.. ..++++|.+.|++.++.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~-mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRA-MKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 5555555555555555544442 2332 222222222211 24555555555555554
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=3.2e-06 Score=75.75 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=187.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHH---HHHH
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKL---IKAY 133 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~ 133 (526)
.+..-+...|.+..|+.-|+.+...+|+ +| .++..-+..|...|+-..|..-+.+....-+.++..- ...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~--~Y----~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN--NY----QAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch--hH----HHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4566677788999999999999887653 23 3466667778888887777777776665555544433 3457
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCC--hh------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGAC--LY------------SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTT 199 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~--~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (526)
.++|.+++|..=|+.+....+... .. .....+..+...|+...|+.....+++.. |-|...|..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~ 194 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQA 194 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHH
Confidence 889999999999999887664211 11 12233445666789999999999998876 778888999
Q ss_pred HHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 043068 200 MIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAM---------- 267 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---------- 267 (526)
-..+|...|++..|+.-+... .+ ..+..++.-+-..+...|+.+.++...++.++. .||...+-..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 999999999999998777665 22 345667777778888899999999998888875 5665432111
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 268 ---IYGLCINGRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 268 ---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
+......++|.++++-.+...+....... ..+..+-.++...|++.+|++...++++.... |+.++.--..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence 11223344455555555544433211111 12233344444455555555555555554221 344555555555
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 043068 342 CKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~ 360 (526)
.-...++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 5555555555555555543
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.9e-07 Score=81.89 Aligned_cols=290 Identities=13% Similarity=0.199 Sum_probs=162.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHH-HHHHHHh
Q 043068 161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNT-MINGFCK 238 (526)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-li~~~~~ 238 (526)
+.+.+..+.+..+++.|++++..-.++. |.+......|..+|....++..|-..++++ ...|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 4445555555666666666666555554 445556666666666666666666666665 23344333332 2344555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 043068 239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG--LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAV 316 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (526)
.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++.... .+..+.+.......+.|+++.|+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 66666666666655432 111111111111 12345555555555554322 22333334444445666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------CH--------HHHHHHHH-
Q 043068 317 GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-------------TV--------FSFNAVFR- 374 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~--------~~~~~li~- 374 (526)
+-|+...+.+.--....|+..+..| +.|++..|++...+++++|++- |. ..-+.++.
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 6666666543333445565555444 4466666666666666654421 11 11223333
Q ss_pred ------HHHHcCCHHHHHHHHHHcccC-CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 375 ------ILVENGELDRAILLLKQMPQM-DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 375 ------~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
.+.+.|+.+.|.+.+..|.-+ .-..|++|...+.- ....++..+..+-+.-+++.++ ....|+..++-.|
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 356788999999988888742 23456666665532 2334677777777777776655 3567888888899
Q ss_pred HhCCCHHHHHHHHHH
Q 043068 448 CEEGNVENVMQIAHE 462 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~ 462 (526)
|+..-++-|-.++-+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 999888888877643
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4e-07 Score=79.82 Aligned_cols=324 Identities=13% Similarity=0.093 Sum_probs=216.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHh
Q 043068 95 YTAITDVLLSHSLISIAASLLKNSNKLSD---FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYN-SLLGVLVR 170 (526)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~ 170 (526)
+.+.+-.+++..++..|.+++......++ ...+.|..+|....++..|-+.|+++.... |...-|. .-...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence 45566667888999999999886654443 467888889999999999999999987655 3333332 23456777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG--YCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
.+.+..|+++...|... ++...-..-+.+ ....+++..+..+.++..-..+..+.+...-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 88999999998888542 233222222222 234688889999999885455666666666667789999999999
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CH---------------HhH
Q 043068 249 MNEMMNR-GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD-------------NV---------------STH 299 (526)
Q Consensus 249 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~ 299 (526)
|+...+- |.. ....|+..+. ..+.|+++.|+++..++.++|++. |+ ..+
T Consensus 167 FqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9998876 455 5677887764 446789999999999998876421 11 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE 378 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 378 (526)
|.-...+.+.|+++.|.+.+-+|..+ ....|++|...+.-.- ..+++.+..+-+.-+.+.+. ....||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 22233456788999998888887643 2344666655543322 23455555555665665543 345789999999999
Q ss_pred cCCHHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068 379 NGELDRAILLLKQMPQMDC-LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI 429 (526)
Q Consensus 379 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 429 (526)
..-++-|-+++.+-...-. -.+...|+.+ .++....-..+++++-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHH
Confidence 9999999998876544211 1334444433 333333356777776665543
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=1e-05 Score=88.88 Aligned_cols=333 Identities=12% Similarity=0.041 Sum_probs=212.9
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC------CC--hhhHHHHH
Q 043068 98 ITDVLLSHSLISIAASLLKNSNK----LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG------AC--LYSYNSLL 165 (526)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~li 165 (526)
.+..+...|++..+..+++..+. .++.........+...|++++|..++......-.. +. ......+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34455667888888888776531 22333334455566789999999999877543111 11 12222334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-----CC-CC--CHHHHHHHH
Q 043068 166 GVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-----TV-KP--NLLAYNTMI 233 (526)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~-~p--~~~~~~~li 233 (526)
..+...|++++|...+++..... -..+ ....+.+...+...|++++|...+++. .. .+ ....+..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 45667899999999999987632 1112 134566777788899999999998876 11 11 123456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHhHHHH
Q 043068 234 NGFCKKGELEEAKKCMNEMMNR----GCR--P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKD--NVSTHKSM 302 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l 302 (526)
..+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999999887653 211 1 22334555666778899999999998875431 112 23345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 043068 303 LKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSY-----EVVINGFCKIGKSDEAISLLKEMRARGLKPTV---FSFNAVF 373 (526)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li 373 (526)
...+...|+.++|...+++........ ....+ ...+..+...|+.+.|...+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 777888999999999998875531110 11111 11234456689999999998776542211111 1134567
Q ss_pred HHHHHcCCHHHHHHHHHHcccC----CCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068 374 RILVENGELDRAILLLKQMPQM----DCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRSG 432 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~ 432 (526)
.++...|+.++|...+++.... |..++. .+...+-.++.. .|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Confidence 7788999999999999987652 322222 233334444444 499999999999998864
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=9e-06 Score=73.28 Aligned_cols=116 Identities=9% Similarity=0.000 Sum_probs=49.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 209 (526)
..++...|++++|+..|..+...+ .++...+-.|...+.-.|.+.+|..+-... +.+...-..|.+...+.++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 334445555555555555544322 233444444444444445555554443322 2233333444444444444
Q ss_pred hhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 210 IENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 210 ~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
-++-..+.+.++. ....--+|.+...-.-.+.+|+++|++.+.
T Consensus 137 Ek~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 137 EKRILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444333320 111122233333333344555555554444
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.8e-06 Score=79.89 Aligned_cols=348 Identities=14% Similarity=0.151 Sum_probs=208.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcC
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKL---SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC-LYSYNSLLGVLVRVN 172 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 172 (526)
.-..+....|+++.|...|-+...+ +...|+.-..+|++.|++++|++=-.+..+.. |+ ...|.....++.-.|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 3466778899999999999876544 44578888899999999999998777766655 55 678999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC----CC--CC------CHHHHHHHHHHHHhc-
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM----TV--KP------NLLAYNTMINGFCKK- 239 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p------~~~~~~~li~~~~~~- 239 (526)
++++|+.-|.+-++.. |.|...++-+..++... . ++.+.|..- ++ .| ....|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999999999886 78888888888887211 1 112222211 11 11 111233333322211
Q ss_pred ---------CCHHHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHHcCC
Q 043068 240 ---------GELEEAKKCMNE-----MMNRG-------CRP----------------------NELTYNAMIYGLCINGR 276 (526)
Q Consensus 240 ---------g~~~~A~~~~~~-----m~~~g-------~~p----------------------~~~~~~~li~~~~~~g~ 276 (526)
.++..|.-.+.. +...| ..| -..-...+.++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 111111111110 00001 111 01124556777777888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV-------VINGFCKIGKSDE 349 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~ 349 (526)
++.|++-+....+.. .+..-++....+|...|.+.++.....+..+.|.. ...-|+. +..+|.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888887654 55556677778888888888877777776665533 2222333 3345666778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 043068 350 AISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVS--YNTIICGLCMAKGRMQDVEDLVDR 427 (526)
Q Consensus 350 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~g~~~~a~~~~~~ 427 (526)
|+..|.+.......|+.. .+....+++....+...- +.|.... -.. -..+.+ .|++.+|...|.+
T Consensus 317 ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~k-Gne~Fk-~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREK-GNEAFK-KGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHH-HHHHHh-ccCHHHHHHHHHH
Confidence 888888876654444322 222333344333333322 1122211 111 112223 3666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 428 MIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 428 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+++..+. |...|....-+|.+.|.+..|+.-.+..++.++
T Consensus 384 AIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 384 AIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 6666533 666666666666666666666666666666654
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=5.5e-08 Score=89.58 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 346 KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 346 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444444444332 233444444444444444445444444444443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=8.2e-08 Score=88.47 Aligned_cols=247 Identities=15% Similarity=0.069 Sum_probs=131.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... +|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~--~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS--SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS--SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC--ChhHHHHHHHHHHHhCccch
Confidence 33445666666665444 222221122334445556666666655433 3333332 45555554444444333444
Q ss_pred hhHHHHHHhC--C-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 211 ENAKKVFDVM--T-VK-PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 211 ~~A~~~~~~~--~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
+.+..-+++. . .. .+..........+...|++++|++++++- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555443 1 11 12222222234455567777777766542 2455556666777777777777777777
Q ss_pred HHHcCCCCCHHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 362 (526)
|.+.. +..+...++.++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 76532 22333334444432 23577777777776554 345677777777777778888888887777765532
Q ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHccc
Q 043068 363 KPTVFSFNAVFRILVENGEL-DRAILLLKQMPQ 394 (526)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 394 (526)
-+..+...++.+....|+. +.+.+++.++..
T Consensus 233 -~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 -NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2455666667666677766 566677777765
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.5e-05 Score=79.38 Aligned_cols=364 Identities=14% Similarity=0.125 Sum_probs=186.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhc----------CC---------CC
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKLSD-FFISKLIKAYGDRGNVKAAIFWFHQAKQI----------EN---------GA 156 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~---------~~ 156 (526)
.+-..|-..|.+++|.++.+...+... .+|.....-+...++.+.|++.|++.... .+ ..
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 333444455666666666554443332 24444555555556666666666543110 00 01
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHH
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGF 236 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 236 (526)
|...|.-....+-..|+.+.|+.+|.... -|..+++..|-.|+.++|-++-++-+ |......+.+.|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMY 977 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHh
Confidence 12222222333333444555555444332 24445555666667777766666643 677777888888
Q ss_pred HhcCCHHHHHHHHHHHHH----------cCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHH
Q 043068 237 CKKGELEEAKKCMNEMMN----------RGCRPNELTY-------------------------NAMIYGLCINGRVDEAK 281 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~----------~g~~p~~~~~-------------------------~~li~~~~~~g~~~~a~ 281 (526)
-..|++.+|..+|.+... .+.+ ...+ ...+..|-+.|.+.+|+
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHH
Confidence 888888888888866533 1111 1111 11223355566666665
Q ss_pred HHHHH--------HHHc--CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH----------cC---------------
Q 043068 282 MLMAK--------MRLN--GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME----------AN--------------- 326 (526)
Q Consensus 282 ~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~--------------- 326 (526)
++--+ ++.. .-..|+...+.-.+.++...++++|..++-...+ .|
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCc
Confidence 54211 1111 2234566667677777777777777766543321 11
Q ss_pred -CCCCHH----HHHHHHHHHHhcCChhHHHHHHHHH----------HHCCC-----------------------------
Q 043068 327 -MNPDVK----SYEVVINGFCKIGKSDEAISLLKEM----------RARGL----------------------------- 362 (526)
Q Consensus 327 -~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m----------~~~~~----------------------------- 362 (526)
-.|+.. ....+...|.++|.+..|-+-|.+. .+.|-
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDW 1215 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDW 1215 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhccc
Confidence 122322 3455667788888877765554432 22221
Q ss_pred CCCHHHH-------------HHHHHHH---H------------HcCCHHHHHHHHHHcccCCC--------CcCHHHHHH
Q 043068 363 KPTVFSF-------------NAVFRIL---V------------ENGELDRAILLLKQMPQMDC--------LPNFVSYNT 406 (526)
Q Consensus 363 ~p~~~~~-------------~~li~~~---~------------~~g~~~~a~~~~~~~~~~~~--------~p~~~~~~~ 406 (526)
+.++.+. ..|..-| + ..|-.++|-+.+.++..... +.+..-+-.
T Consensus 1216 q~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~ 1295 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKV 1295 (1416)
T ss_pred ccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 1122221 2222222 1 11333444444444443210 011111222
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNL----DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
.+...-....+..+...-...|.+...-| -...|..|+..+....++..|-+.+.+|..+.+ ..+...|
T Consensus 1296 ~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p-~~~~s~~ 1368 (1416)
T KOG3617|consen 1296 QLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP-NVDLSTF 1368 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC-ccchhcc
Confidence 22221111234555555566666654433 346899999999999999999999999999887 5555544
No 98
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=3.4e-06 Score=78.88 Aligned_cols=211 Identities=11% Similarity=0.098 Sum_probs=131.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+.+-..+...++.++|+.++++++...+ .+..+|+....++...| ++++++..++++.+.+ |.+..+|+...-.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence 3344455667788888888888887764 34556776666677777 5788888888888876 677777877666666
Q ss_pred HcCCh--hhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 043068 206 KMGMI--ENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN---GRV- 277 (526)
Q Consensus 206 ~~g~~--~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~- 277 (526)
+.|+. +++..+++++ ..+.|..+|+...-++.+.|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 66652 5566666665 22346667777777777778888888888888877655 555666555444443 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 278 ---DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 278 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
++.+.+..+++... +-+...|+-+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555555443 44555665555555542 2334455555555544322 44555555555553
No 99
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=4.3e-06 Score=78.20 Aligned_cols=228 Identities=9% Similarity=0.062 Sum_probs=130.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (526)
.+-..+...++.++|+.++.++++.... +..+|+....++...| ++++++..++++.+.. +.+..+|+-....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 3334444556667777777776665222 3334444444455555 4567777777666554 44444555444444445
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC---
Q 043068 310 GKF--DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN---GE--- 381 (526)
Q Consensus 310 g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~--- 381 (526)
|+. ++++.+++++++.+.+ |..+|+...-.+...|+++++++.++++++.+.. +...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 542 5566677777766554 6667777777777777777777777777766433 444555554444433 22
Q ss_pred -HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC------
Q 043068 382 -LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG------ 451 (526)
Q Consensus 382 -~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 451 (526)
.++.+++..+++... +-|...|+-+...+... .++..+|.+.+.+..+.++. +......|++.|+...
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhh
Confidence 235566665655532 12344455554444331 13345677777776665433 6667777777776532
Q ss_pred ------------CHHHHHHHHHHHH
Q 043068 452 ------------NVENVMQIAHEMV 464 (526)
Q Consensus 452 ------------~~~~a~~~~~~m~ 464 (526)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 3467888888884
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.6e-05 Score=80.94 Aligned_cols=385 Identities=12% Similarity=0.068 Sum_probs=226.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKA 141 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 141 (526)
..+...|+..|-++.+..+ .-..+|..+++.|....+...|...|++.-..|+. ....+.+.|++..+++.
T Consensus 471 rK~~~~al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 4557788999998887654 12446999999999888899999999988776654 56788999999999999
Q ss_pred HHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 142 AIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 142 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
|..+.-..-+..+. .....|....-.|.+.++...|+.-|+...+.. |.|...|..+..+|.+.|++..|.++|.+.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 99884443332211 113345555666788899999999999999887 889999999999999999999999999988
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 043068 221 -TVKPNLL-AYNTMINGFCKKGELEEAKKCMNEMMNR------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKM----- 287 (526)
Q Consensus 221 -~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~----- 287 (526)
.+.|+.. .-.-.....+..|.+.+|+..+...... +..--..++..+...+.-.|-..+|.++++.-
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455432 2222334567789999999998877653 11111223333333333334333344433332
Q ss_pred --HHcCCCCCHHhHHHHHHHHHHcCCHH------HHHHHHH-HHHHcCCC--------------------CCHHHHHHHH
Q 043068 288 --RLNGFKDNVSTHKSMLKGLCVVGKFD------QAVGYLR-NVMEANMN--------------------PDVKSYEVVI 338 (526)
Q Consensus 288 --~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~-~~~~~~~~--------------------~~~~~~~~li 338 (526)
..+....+...|..+-++|.-.-..+ ....++. +....+.- .+..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 22221222223322222221110000 0000110 01111111 1122233333
Q ss_pred HHHHh----cC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068 339 NGFCK----IG----KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410 (526)
Q Consensus 339 ~~~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 410 (526)
..|.+ .| +...|+..+.+.++.. .-+..+|++|--. ...|++.-|.-.|-+-.... +....+|..+- .
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nlg-v 858 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG-V 858 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccc-e
Confidence 22222 11 2235666666655442 2245566655444 55566666666555444321 12333444443 3
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043068 411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE 462 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 462 (526)
+|-.+.+++.|...|.+.....+. +...|-.........|+.-++..+|..
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344557888888888887765433 556666666666677877777777776
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=7.1e-07 Score=88.47 Aligned_cols=304 Identities=16% Similarity=0.158 Sum_probs=168.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCC------------CCCHHHHHHHHHH
Q 043068 168 LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV------------KPNLLAYNTMING 235 (526)
Q Consensus 168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~p~~~~~~~li~~ 235 (526)
|...|+.+.|.+-.+.+. +..+|..+.+.+.+..++|-|.-.+..|+. .|+ .+=.-..-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 344455555544444332 223555555555555555555554444411 111 111112222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
....|.+++|+.+|.+-+. |..|=..|-..|.|++|.++-+.--.. -=..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 3456778888888877654 333444566778888887776542111 1124566666666677788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
++.|++.... -...+..| ..++.....+.+++. |...|......+...|+.|.|+.+|....+
T Consensus 878 leyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 878 LEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 8877764221 11111111 122333333334433 445566666666778889999888887665
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCccch
Q 043068 396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK--GRLLKL 473 (526)
Q Consensus 396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~ 473 (526)
|-++++..|.. |+.++|-++.++- | |......|.+.|...|++.+|...|-+..... ++.-..
T Consensus 941 --------~fs~VrI~C~q-Gk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQ-GKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred --------hhhheeeEeec-cCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677776 8888888877653 2 66667778888888899988888887765432 222222
Q ss_pred hhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH----hcCCcccceeccC
Q 043068 474 KNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTV----EDGKRSECLIVSF 526 (526)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~ 526 (526)
..+-..+...++. ..|...+++..-.++.-..+.+|+ .-|.+.++|++||
T Consensus 1006 nd~~d~L~nlal~---s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 1006 NDMKDRLANLALM---SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred cCHHHHHHHHHhh---cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence 2222222222222 233334444443444444455554 4578888888776
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=9.9e-07 Score=84.50 Aligned_cols=253 Identities=13% Similarity=0.067 Sum_probs=174.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 209 (526)
...+.+.|+..+|.-.|+.....++ .+...|..|.......++-..|+..+.+.++.. |.|....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence 3445677888888888888877764 467888888888888888888888888888876 7788888888888888888
Q ss_pred hhhHHHHHHhC-CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCH
Q 043068 210 IENAKKVFDVM-TVKP----------NLLAYNTMINGFCKKGELEEAKKCMNEMM-NRGCRPNELTYNAMIYGLCINGRV 277 (526)
Q Consensus 210 ~~~A~~~~~~~-~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~ 277 (526)
-..|.+.++.- ...| +...-.. ..+.....+....++|-++. +.+..+|......|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888877664 1010 0000000 11222233445555555554 344446777777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
++|.+.|+.++... +-|...||.|...++...+.++|+..|.+.++..+. -+++...|.-.|...|.+++|.+.|-..
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 88888888887765 667778888888888888888888888888886433 2344555666788888888888877765
Q ss_pred HHC---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 358 RAR---------GLKPTVFSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 358 ~~~---------~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
+.. +..++...|..|=.++.-.++.|-+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 431 12234567777766777777776554443
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00024 Score=72.75 Aligned_cols=257 Identities=11% Similarity=0.147 Sum_probs=173.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcC
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDR 136 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 136 (526)
...+.+...+-|.+-+++++.+.-. +..|+.....-+.++-.-.+..+ ..+-+.+++...-|.. .+.......
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa~---~ia~iai~~ 1061 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDAP---DIAEIAIEN 1061 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCch---hHHHHHhhh
Confidence 3445556666677778888877632 23454444444444444344332 2333344443322221 234445567
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068 137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV 216 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 216 (526)
+-+++|..+|++.- .+..+.+.|+. ..+.++.|.+.-++.- ....|..+..+-.+.|.+.+|++-
T Consensus 1062 ~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 77899999988643 34555555553 3467777777766542 346899999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068 217 FDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV 296 (526)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 296 (526)
|-+.. |...|..+++...+.|.+++-.+.+...+++.-+|... +.|+-+|++.++..+.++++. -|+.
T Consensus 1127 yikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1127 YIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred HHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence 87754 67789999999999999999999998888776666544 477889999999888766652 4777
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
.....+.+-|...|.++.|.-+|..+ ..|..|...+...|++..|.+.-++
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777888888888888887766543 3366777777777777776655444
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=4.4e-06 Score=82.07 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL 176 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (526)
+..+.+...|+-+.|-++-+..+. . -+-|..|.+.|.+.+|......-... ..|......+..++.+..-+++
T Consensus 594 sy~q~l~dt~qd~ka~elk~sdgd----~-laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAELKESDGD----G-LAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHHHhcCchhhhhhhccccCc----c-HHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHh
Confidence 344555667777777665443322 1 23466777888877776543221111 1334444444444444444444
Q ss_pred HHHHHHHHHHc---------C------------CCCCCHHHH-HHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHH
Q 043068 177 AEEFFHQIVKE---------N------------VVPPDVSTY-TTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMIN 234 (526)
Q Consensus 177 A~~~~~~~~~~---------~------------~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~ 234 (526)
|-++|+.+..- | ..|..+++. ......+...|+++.|...|-+.. .....+.
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------~~~kaie 740 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------CLIKAIE 740 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------hHHHHHH
Confidence 44444443210 0 011111111 111222233444444444443332 1112344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
+.....+|.+|+.+++.+.+... -.--|..+...|+..|+++.|+++|.+.- .++-.|.+|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 45566777778877777766532 23346677777888888888888876532 24456778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
|.++-.+.. |.......|.+-..-.-++|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++.++...
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 877655543 334455566666666777788888777765443 233 346677778888777777766543
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068 395 MDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 395 ~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
..+. .|...+..-+-. .|++.+|+..|-+.- -|.+-++.|...+-|++|.++.+
T Consensus 879 d~l~---dt~~~f~~e~e~-~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 879 DHLH---DTHKHFAKELEA-EGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhh---HHHHHHHHHHHh-ccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 2222 223333333333 488888877665542 24555666777777777766543
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=5.4e-06 Score=87.06 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVK-----PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELT 263 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (526)
|.+...|-..|..+...+++++|.+++++. .+. .-...|.++++.-..-|.-+...++|+++.+. +. .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHH
Confidence 455556666666666666666666666665 111 11234555555555556666666666666654 11 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFC 342 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 342 (526)
|..|...|.+.+++++|.++++.|.+.- .....+|...+..+.+..+-+.|..++.+.++.-++. ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6666666666667777777777666542 2455566666666666666666666666666542221 2223344444555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCCCHHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSYNTIICGLCMAKGRMQD 420 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~g~~~~ 420 (526)
+.|+.+.+..+|+...... +--...|+.++++-.++|+.+.+..+|++....++.|- -..|...+ .|-+.+|+-+.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCchhh
Confidence 6667777777776665542 22345666677776777777777777777666555544 23444444 23444455444
Q ss_pred HHHHHH
Q 043068 421 VEDLVD 426 (526)
Q Consensus 421 a~~~~~ 426 (526)
++.+=.
T Consensus 1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred HHHHHH
Confidence 444333
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.1e-06 Score=84.10 Aligned_cols=254 Identities=16% Similarity=0.125 Sum_probs=189.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 043068 164 LLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGE 241 (526)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~ 241 (526)
....+.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+.+. .+.| |....-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 3446778999999999999999998 889999999999999999999999988886 5555 57788889999999999
Q ss_pred HHHHHHHHHHHHHcCC------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068 242 LEEAKKCMNEMMNRGC------R--PNELTYNAMIYGLCINGRVDEAKMLMAKM-RLNGFKDNVSTHKSMLKGLCVVGKF 312 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~------~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~ 312 (526)
-.+|+++++..+...+ . ++...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999999998865421 0 01110000 1111222233444455444 4555558888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
++|...|+..+...+. |...||.|...++...+.++|+..|++.++. +|+- .+...|..+|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999998655 8889999999999999999999999999986 6663 3556677789999999999999877
Q ss_pred ccc---C------CCCcCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 043068 392 MPQ---M------DCLPNFVSYNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 392 ~~~---~------~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
.+. . ...++...|..|-.++.. .++.+-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~-~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSA-MNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHH-cCCchHHHHhc
Confidence 653 1 112334566665544433 36666555444
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=6e-06 Score=86.75 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=176.4
Q ss_pred hHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068 212 NAKKVFDVMTVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN-----ELTYNAMIYGLCINGRVDEAKMLMA 285 (526)
Q Consensus 212 ~A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~ 285 (526)
.|..+-....-.| +...|-..|......++.++|.+++++.+.. +.+. .-.|.++++.-..-|.-+...++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3444333333244 4557888888888899999999999888764 2221 2356666666666777788888898
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068 286 KMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 365 (526)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 365 (526)
++.+. .....+|..|...|.+.+++++|.++++.|.+.-- -....|...+..+.++++-++|..++.+..+. -|.
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk 1596 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPK 1596 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cch
Confidence 88764 34456788888999999999999999999988632 36678888899999998889999999888764 333
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 043068 366 ---VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF--TMY 440 (526)
Q Consensus 366 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~ 440 (526)
.......+..-.+.|+.+.+..+|+...... +-....|+..++.-.+ +|+.+.++.+|++.+..++.|-- ..|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik-~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIK-HGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 3345556666678899999999998887642 2345678888888655 48899999999999988877654 366
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
...+..=-.+|+-+.++.+=.++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHH
Confidence 666666666777665555544443
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=1.9e-05 Score=80.53 Aligned_cols=390 Identities=12% Similarity=0.030 Sum_probs=238.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH-----HHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF-----FISKLI 130 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~li 130 (526)
..+..+++..-|..+|.+-|+.+.+.++. ...+...+++.+++...+++|..+.-.....++. -|-...
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDat------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELDAT------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCch------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 35666777666888899999999877542 2345788899999999999999886544433322 233355
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
-.|.+.+++.+|+..|+...+.++ .|...|..+..+|.+.|++..|.++|.+...-. |.+...-.-.....|..|.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhH
Confidence 568889999999999999988775 678999999999999999999999999988765 55555544555667788999
Q ss_pred hhHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHH--
Q 043068 211 ENAKKVFDVM---------TVKPNLLAYNTMINGFCKKGELEEAKKCMNEM-------MNRGCRPNELTYNAMIYGLC-- 272 (526)
Q Consensus 211 ~~A~~~~~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~~~~~li~~~~-- 272 (526)
.+|...++.. +...-..++-.+...+.-.|-..+|.+++++- ......-+...|-.+-.+|.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9999888776 11111223333333333333333333333332 22211112222222222211
Q ss_pred ---------------------HcCCH---H---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHH----c----CCHHHHHH
Q 043068 273 ---------------------INGRV---D---EAKMLMAKMRLNGFKDNVSTHKSMLKGLCV----V----GKFDQAVG 317 (526)
Q Consensus 273 ---------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~ 317 (526)
..+.. + -+.+.+-.-. .+..+..+|..++..|.+ . .+...|..
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 11111 1 0111111111 112234455555554444 1 22346777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068 318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC 397 (526)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 397 (526)
.+.+.++..-. +..+|+.|.-. ...|++.-|.-.|-+-.... +-...+|..+...+.+..+++.|...|..... +
T Consensus 805 c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--L 879 (1238)
T KOG1127|consen 805 CCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--L 879 (1238)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--c
Confidence 77777665433 67778877655 56677777777666555442 23566888888889999999999999999887 4
Q ss_pred CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068 398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMI----RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
.|+...-..=...+..+.|+.-++..+|..-- ..|-.++...|-+...-....|+.++-+...+
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 46543322222223344577888888877622 22445566666666556666777665444433
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=2.7e-05 Score=76.76 Aligned_cols=338 Identities=14% Similarity=0.075 Sum_probs=207.1
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHcCCCHHHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSD-FFISKLIKAYGDRGNVKAAI 143 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 143 (526)
..+++.|..+|-. ++. ....+-.|..-.++++|..+.+..+.|.- ..-.+.++++...|+-++|-
T Consensus 544 ~kkfk~ae~ifle---qn~-----------te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~ 609 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLE---QNA-----------TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAA 609 (1636)
T ss_pred HhhhhHHHHHHHh---ccc-----------HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhh
Confidence 4567788877742 211 23345566667889999999886665443 34456777888888888876
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCC-
Q 043068 144 FWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTV- 222 (526)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 222 (526)
++-+ . +-.+ -+.|..|.+.|.+-.|.+....=.. +..|......+..++.+..-+++|-.+|+++..
T Consensus 610 elk~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 610 ELKE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF 677 (1636)
T ss_pred hhcc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence 6422 1 1111 2467889999998887765432211 234555555555555555555555555555421
Q ss_pred ------------------------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 043068 223 ------------------------KPNLLAY-NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRV 277 (526)
Q Consensus 223 ------------------------~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (526)
+..+++. .....-+...|+++.|+.-|-+... ....+.+......|
T Consensus 678 dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew 748 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEW 748 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhh
Confidence 0111111 1122233334555555544433211 12334556677888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
.+|+.+++.+.... .-..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-.+.
T Consensus 749 ~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 749 KKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh
Confidence 89999988887653 233456778888999999999998886532 2566788899999999999887766
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 043068 358 RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF 437 (526)
Q Consensus 358 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 437 (526)
.. .......|-+-..-+-+.|++.+|.++|-.+-. |+. .|..|-+ .|..+...++.++-.- ..-.
T Consensus 818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk-~~~~ddmirlv~k~h~---d~l~ 882 (1636)
T KOG3616|consen 818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDK-HGLDDDMIRLVEKHHG---DHLH 882 (1636)
T ss_pred cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHh-hCcchHHHHHHHHhCh---hhhh
Confidence 53 233455666666677788999999888765543 543 2344444 4888888777765421 1123
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 438 TMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
.|...+..-|...|+...|..-|-+.
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh
Confidence 45666677777778887777665443
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.72 E-value=0.00031 Score=67.33 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEA-NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 312 ~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
.+....+++++... ...| ..+|..+++.-.+..-++.|..+|.+..+.+..+ ++.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55556666666554 2333 3467888888889999999999999999987777 67788888887765 7889999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDF--TMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
+.-.+.- ..+..--...++-+.. .++-..+..+|++.+..+..||. .+|..++.-=..-|+...+.++-+++...-
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~-lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSH-LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHH-hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 9866531 1223333344444444 48889999999999998666554 699999999999999999999999988776
Q ss_pred C
Q 043068 468 G 468 (526)
Q Consensus 468 ~ 468 (526)
+
T Consensus 503 ~ 503 (656)
T KOG1914|consen 503 P 503 (656)
T ss_pred c
Confidence 6
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=2.1e-05 Score=82.07 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
.+..++.+|-+.|+.++|..+|+++++.... |..+.|.+...|... ++++|+.++.++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3444444444444444454444444444322 344444444444444 444444444444
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.2e-05 Score=79.43 Aligned_cols=221 Identities=7% Similarity=0.029 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.-..+...+...|-...|..+|++.. .|.-.+.+|+..|+..+|..+..+..+. +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34567778888899999999998764 4666788999999999999998888773 788888888888777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068 308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAIL 387 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 387 (526)
...-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765443 22223333345789999999998876653 2345678788888889999999999
Q ss_pred HHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 388 LLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 388 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
.|..... ..|| ...||.+-.++.+. |+-.+|...+.+..+.+.. +..+|...+....+.|.+++|++.++++.+.
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999887 4466 56789998888876 9999999999999998844 7778888888899999999999999999876
Q ss_pred CCCcc
Q 043068 467 KGRLL 471 (526)
Q Consensus 467 ~~~~~ 471 (526)
.....
T Consensus 617 ~~~~~ 621 (777)
T KOG1128|consen 617 RKKYK 621 (777)
T ss_pred hhhcc
Confidence 65444
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=4.2e-06 Score=75.80 Aligned_cols=190 Identities=14% Similarity=0.081 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHH---HHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGA-C-LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVS---TYTT 199 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~ 199 (526)
.+..++..+...|++++|...|+++....+.. . ..++..+..++.+.|++++|...++++++.. |.+.. ++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence 44455555556666666666666555444210 0 1244455555556666666666666665543 22221 2322
Q ss_pred HHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHH
Q 043068 200 MIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-LTYNAMIYGLCINGRVD 278 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~ 278 (526)
+..++.+. +...+...|+.++|.+.|+++... .|+. ..+..+.... . ..
T Consensus 113 ~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~ 162 (235)
T TIGR03302 113 RGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR 162 (235)
T ss_pred HHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH
Confidence 33333221 000111236677777777777765 2332 2222111110 0 00
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN--PDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
.. .. .....+...|.+.|++++|...++...+.... .....+..+..++.+.|++++|...++.
T Consensus 163 ~~------~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 163 NR------LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HH------HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 00 01124556677788888888888887765321 2345677788888888888888887777
Q ss_pred HHHC
Q 043068 357 MRAR 360 (526)
Q Consensus 357 m~~~ 360 (526)
+...
T Consensus 229 l~~~ 232 (235)
T TIGR03302 229 LGAN 232 (235)
T ss_pred HHhh
Confidence 7654
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=6.8e-08 Score=56.71 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 361 GLKPTVFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 361 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.4e-05 Score=69.43 Aligned_cols=123 Identities=16% Similarity=0.075 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043068 265 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI 344 (526)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (526)
+..+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+..+. +...++.+...|.-.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~ 181 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHc
Confidence 334444444444444444444444332 444444444444444444444444444444443222 333344444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068 345 GKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLK 390 (526)
Q Consensus 345 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (526)
|+.+.|..++......+.. |...-..+.......|++++|.++..
T Consensus 182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555444443211 33344444444445555555544443
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.7e-08 Score=57.05 Aligned_cols=32 Identities=34% Similarity=0.800 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 432 GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 432 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.6e-05 Score=69.29 Aligned_cols=154 Identities=10% Similarity=0.156 Sum_probs=108.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
-+..|...|+++.+....+.+... . ..+...++.++++..++...+.+ +.+...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 345677778777765443222211 0 01223566777777777776653 3467788888888889999
Q ss_pred HHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043068 382 LDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQ 458 (526)
Q Consensus 382 ~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 458 (526)
+++|...|++..+.. |+ ...+..+...+....|+ .++|.+++++.++.++. +...+..+...+.+.|++++|+.
T Consensus 89 ~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999888743 54 44455544444333366 58999999999987666 77888889999999999999999
Q ss_pred HHHHHHHcCCCcc
Q 043068 459 IAHEMVTKKGRLL 471 (526)
Q Consensus 459 ~~~~m~~~~~~~~ 471 (526)
.|+++++..+...
T Consensus 166 ~~~~aL~l~~~~~ 178 (198)
T PRK10370 166 LWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhhCCCCc
Confidence 9999988887443
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=7.6e-06 Score=74.13 Aligned_cols=187 Identities=11% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSY 334 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 334 (526)
....+..+...+.+.|++++|...++++.+.. +.+. .++..+..++...|++++|...++++.+..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45667777778888899999999888887653 2222 45677788888889999999999888876443222 234
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 335 EVVINGFCKI--------GKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 335 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
..+..++... |++++|.+.++.+... .|+.. .+..+.... ....... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~~~~-------------~-~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRNRLA-------------G-KEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHHHHH-------------H-HHH
Confidence 4455555544 6778888888888765 34432 222221110 0110000 0 011
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 406 TIICGLCMAKGRMQDVEDLVDRMIRSGHN-L-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.+...+... |++++|...++++++.... | ....+..++.++.+.|++++|...++.+....+
T Consensus 171 ~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 233344554 9999999999999986432 2 357889999999999999999999998877664
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00013 Score=63.55 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=133.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043068 167 VLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAK 246 (526)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 246 (526)
-+.-.|.+..++..-...... +.+...-..+.++|...|.+.....-...-. .|.......+...+..-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 344456666665554443322 2344445556667777777665544443333 344444444444444444444333
Q ss_pred H-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 247 K-CMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 247 ~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
. +.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 3334444333333333334445677777777777776652 12223333344556666777777777777764
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCH
Q 043068 326 NMNPDVKSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF 401 (526)
Q Consensus 326 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 401 (526)
. +..+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.....- -++
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence 2 44555556555543 34567777777777653 466777777777777777777777777777765431 233
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 043068 402 VSYNTIICGLCMAKGRM-QDVEDLVDRMIR 430 (526)
Q Consensus 402 ~~~~~ll~~~~~~~g~~-~~a~~~~~~~~~ 430 (526)
.+...++...... |.. +-..+.+..+..
T Consensus 242 etL~Nliv~a~~~-Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHL-GKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHh-CCChHHHHHHHHHHHh
Confidence 3333333222222 443 333445555544
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=1.1e-05 Score=70.16 Aligned_cols=155 Identities=9% Similarity=0.092 Sum_probs=109.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
-+..|...|+++.+....+.+.. +. . .+...++.+++...++..++.+ |.|...|..+...|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence 34567788888877655533221 10 0 1122566777778888888776 788888888888888888
Q ss_pred ChhhHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 209 MIENAKKVFDVM-TVKP-NLLAYNTMINGF-CKKGE--LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML 283 (526)
Q Consensus 209 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (526)
++++|...|++. ...| +...+..+..++ ...|+ .++|.+++++..+.... +..++..+...+.+.|++++|+..
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888876 3333 566777777764 56666 48888888888887544 667777888888888888888888
Q ss_pred HHHHHHcCCCCCHHhH
Q 043068 284 MAKMRLNGFKDNVSTH 299 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~ 299 (526)
++++.+.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 88887765 4544333
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00028 Score=72.35 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=182.6
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC------------
Q 043068 52 CLGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN------------ 119 (526)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------ 119 (526)
.+++..+ .-++..+||.-|.-.+++-.-. ..--+.......|...++.+.+..+.+.-.+++.+..
T Consensus 898 yYDs~vV-GkYCEKRDP~lA~vaYerGqcD-~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~ 975 (1666)
T KOG0985|consen 898 YYDSKVV-GKYCEKRDPHLACVAYERGQCD-LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQ 975 (1666)
T ss_pred cchhhHH-hhhhcccCCceEEEeecccCCc-HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHH
Confidence 3444444 4556667777776666643311 0001122233457777888887777766555553211
Q ss_pred -----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 043068 120 -----KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG--ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP 192 (526)
Q Consensus 120 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 192 (526)
..+|...+.-++++...+-+.+-+++++++.-.... .+...-|.|+-...+. +..+..+..+++-.-+ .|
T Consensus 976 tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~ 1052 (1666)
T KOG0985|consen 976 TALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--AP 1052 (1666)
T ss_pred hcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--ch
Confidence 245667778899999999999999999998632211 1122334444333333 3344455555543322 22
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHhCCC------------------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 193 DVSTYTTMIRGYCKMGMIENAKKVFDVMTV------------------------KPNLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
+. .......+-+++|..+|++... -.....|..+..+-.+.|.+.+|++-
T Consensus 1053 ~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1053 DI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence 21 2223333444455554444310 11344677777777778888888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN 328 (526)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (526)
|-+.- |+..|..+++...+.|.|++-.+++...++..-.|.+ -+.++-+|++.++..+.++++ .-
T Consensus 1127 yikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cC
Confidence 64432 6677888888888888888888888777766544443 346777888888876655443 13
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 329 PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
||......+.+-|...|.++.|.-+|... .-|..|...+...|+++.|.+.-++.
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56666677777777778887777666533 34666777777777777776655544
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.3e-05 Score=69.75 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI 273 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (526)
....++....+.|++..|...|.+. .-++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHH
Confidence 3333444444444444444444443 22333444444444444444444444444444433111 23333333334444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068 274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG 317 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (526)
.|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus 181 ~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 181 RGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 444444444444443332 2233333334444444444444433
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=3.6e-05 Score=79.51 Aligned_cols=141 Identities=10% Similarity=0.040 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHH
Q 043068 328 NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNT 406 (526)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 406 (526)
..+...+..|.....+.|.+++|+.+++...+. .|+ ......+...+.+.+++++|+..+++.... .|+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 336778888888888888888888888888876 555 345667778888888899998888888874 377666666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
+....+...|++++|..+|+++...++. +..++..+..++...|+.++|...|++.++....-...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 6655556668899999999988874433 57788888888888899999999998888876544444
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.9e-06 Score=83.54 Aligned_cols=215 Identities=14% Similarity=0.122 Sum_probs=149.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
-..+...+.+.|-...|+.+|++.. .|.-++..|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhcc
Confidence 3456677777888888888887643 4566777888888888888887777763 678888877777776
Q ss_pred HcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068 206 KMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMA 285 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (526)
..--+++|.++++... ...-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|.
T Consensus 469 d~s~yEkawElsn~~s----arA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS----ARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred ChHHHHHHHHHhhhhh----HHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6666778888777642 1122222333344678888888887766553 2245667777777777888888888887
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 286 KMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
...... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+-...+.|.+++|++.+.++..
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 776543 455667888888888888888888888887776633 455566666667777888888888777754
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=4.1e-06 Score=68.93 Aligned_cols=118 Identities=8% Similarity=-0.038 Sum_probs=88.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043068 351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMI 429 (526)
Q Consensus 351 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 429 (526)
..++++..+. .|+ .+..+...+.+.|++++|...|+..... .|+ ...|..+...+. ..|++++|...|++.+
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWM-MLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 3455555554 344 3556677888899999999999998874 354 444555544444 4599999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 430 RSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 430 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
+.++. +...+..+..++.+.|+.++|+..|++.++..+..+.....
T Consensus 86 ~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 86 MLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred hcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 87654 78889999999999999999999999999999877765443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=4.5e-05 Score=78.76 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
++...+.-....+++.-..... .....++..+-.|..+..+.|.+++|..+++.+.+.. |.+......++.++.+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYV-RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHH-HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhc
Confidence 3444333334444433333332 2233568888888899999999999999999998876 778888888999999999
Q ss_pred ChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 209 MIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 209 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
++++|....++. ...| +......+..++.+.|++++|..+|++....+. -+..++..+..++-..|+.++|...|+.
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998887 3344 456677788888899999999999999988432 2578888888889999999999999998
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA----NMNPDVKSYEVVINGFCKI 344 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 344 (526)
..+.. .+....|+..+. +...-...++.+.-. |......+...+|..|.+.
T Consensus 214 a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 214 GLDAI-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHhh-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 87654 344455554432 333334445554432 2333344555666666544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=1.9e-06 Score=70.93 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM 200 (526)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 200 (526)
.++..+..+...+...|++++|...|+......+ .+...|..+..++.+.|++++|...|++..+.+ |.+..++..+
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~l 98 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQT 98 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHH
Confidence 3333333444455555555555555555554443 345555555555555555555555555555544 4555555555
Q ss_pred HHHHHHcCChhhHHHHHHhC
Q 043068 201 IRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~ 220 (526)
..++.+.|+.++|.+.|+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.00098 Score=64.02 Aligned_cols=371 Identities=10% Similarity=0.049 Sum_probs=214.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 043068 90 HTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG 166 (526)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 166 (526)
.+..+|+.|++-+... .+++++..+++.. +..+..|..-|..-....+++....+|.+....- -+...|...+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 4566788888876655 8888888888755 3346678888888888888888888888877544 34556666664
Q ss_pred HHHhc-CChh----HHHHHHHHHHHcCCC-CCCHHHHHHHHHH---------HHHcCChhhHHHHHHhCCCCC--CH-HH
Q 043068 167 VLVRV-NSIK----LAEEFFHQIVKENVV-PPDVSTYTTMIRG---------YCKMGMIENAKKVFDVMTVKP--NL-LA 228 (526)
Q Consensus 167 ~~~~~-g~~~----~A~~~~~~~~~~~~~-~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~p--~~-~~ 228 (526)
--.+. |+.. ...+.|+-.+..-+. ..+-..|+..+.. |....+++...++++++-..| +. ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 33332 3322 233445544443222 2233345555433 233445666777787773333 22 13
Q ss_pred HHHHHH-----------H--HHhcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcCCHH
Q 043068 229 YNTMIN-----------G--FCKKGELEEAKKCMNEMMN--RGCRPNELT---------------YNAMIYGLCINGRVD 278 (526)
Q Consensus 229 ~~~li~-----------~--~~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~~~ 278 (526)
|+-... - --+...+-.|.++++++.. +|..-...+ |..+|.- -+.+-..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence 332111 0 0113355666667666643 344322222 3333321 1111100
Q ss_pred ---------HHHHHHHHH-HHcCCCCCHHhHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068 279 ---------EAKMLMAKM-RLNGFKDNVSTHK-----SMLKGLCVVGK-------FDQAVGYLRNVMEANMNPDVKSYEV 336 (526)
Q Consensus 279 ---------~a~~~~~~~-~~~~~~~~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (526)
...-.+++. .-.+..|++.... ..-+.+...|+ .+++..+++..++.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112221 1122333322111 11122333333 4455566665554322223444444
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHH
Q 043068 337 VINGFCKIG---KSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGL 411 (526)
Q Consensus 337 li~~~~~~g---~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~ 411 (526)
+.+.--..- +.+..-..++++...- ..| ..+|..+++.--+...++.|..+|.++.+.+..+ ++..+++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 433222111 3556666777765542 333 3478888998889999999999999999877666 788899999988
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 412 CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
|. ++.+-|.++|+--+++ +.-++..-...++-+...++-..|..+|++.++.+.
T Consensus 413 cs--kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 413 CS--KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred hc--CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 85 7999999999987775 444566667788888899999999999999998843
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=6.8e-05 Score=65.30 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=56.2
Q ss_pred HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 043068 201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGR 276 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 276 (526)
...|++.|++++|++..... -+......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+ .+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchh
Confidence 34455555555555555542 123333333344445555555555555555431 33444444444433 233
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (526)
+.+|.-+|++|-+. .+|+..+.+-.+.++...|++++|..+++......
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44555555555432 24445555555555555555555555555555443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=0.00014 Score=76.03 Aligned_cols=234 Identities=11% Similarity=0.076 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGD 135 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 135 (526)
..|+..+...+++++|++..+......|+... .|..++.++.+.++.+.+..+ .++.....
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~------~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSIS------ALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCccee------hHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 45677777899999999999988876664332 366666677777765544332 45555566
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
..++.....+...+...+ .+..++-.+..+|-+.|+.++|..+++++++.. +.|..+.|.+...|... ++++|.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 NLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 666755555555555543 456688889999999999999999999999987 88999999999999999 9999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN 295 (526)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 295 (526)
++.+. +..+...+++.++.++|.++....+. +...+..+.+.....- |..--
T Consensus 171 m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~ 222 (906)
T PRK14720 171 YLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRL 222 (906)
T ss_pred HHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchh
Confidence 88763 22366777888888888888876322 2222222222222111 11122
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 296 VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
+.++--+-..|-..++++++..+++.+.+.... |..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 233444555666677777777777777776544 5555666666654
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00019 Score=68.03 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=130.8
Q ss_pred CHHHHHHHHHhcCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068 107 LISIAASLLKNSNK------LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180 (526)
Q Consensus 107 ~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (526)
++..+++..+.++. ++.......+.+......-..+..++.+..+ ..-..--|. ....+...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG-~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYG-RALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHH-HHHHHHHhcccchHHHH
Confidence 34455555555442 2333445555544433333333333333222 111122233 33355667888999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR 258 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 258 (526)
++.++..- |.|...+......+.+.++.++|.+.++++ ...|+ ....-.+..+|.+.|+..+|+.+++...... +
T Consensus 329 l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 329 LQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 99888775 778888888888888889999998888887 44555 5566778888888888888888888887764 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 259 PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
-|+..|..|..+|...|+..++..-..+ .|...|++++|...+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 3788888888888888888877655443 456678888888888777665
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00028 Score=66.94 Aligned_cols=142 Identities=14% Similarity=0.157 Sum_probs=114.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
....+...|++++|+..+..+....+ .|++.+......+.+.++.++|.+.++.++... |........+..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcC
Confidence 33445578899999999999876653 567777788889999999999999999998875 555778888899999999
Q ss_pred ChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 209 MIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 209 ~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
+..+|+++++.. ..+.|...|..|..+|...|+..++.....+ .|...|++++|...+..
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence 999999999887 4566788999999999999998887766544 45567888888888888
Q ss_pred HHHcC
Q 043068 287 MRLNG 291 (526)
Q Consensus 287 ~~~~~ 291 (526)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76653
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0034 Score=64.08 Aligned_cols=419 Identities=16% Similarity=0.132 Sum_probs=237.9
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHH--HHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITD--VLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNV 139 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 139 (526)
.++++.|++-....++..|+.. |..... .+.+.|+.++|..+++.-. ..|..+...+-.+|.+.|+.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 5678999999999988766432 344333 3467899999999888532 33667889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hh-------
Q 043068 140 KAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM-IE------- 211 (526)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~------- 211 (526)
++|..+|++..... |+......+..+|.+.+.+.+-.+.--++-+. .|.+.+.+=++++.+...-. .+
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998776 66888888899999999887665555555554 35566665566666555321 11
Q ss_pred --hHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 212 --NAKKVFDVMTVKP----NLLAYNTMINGFCKKGELEEAKKCMN-EMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLM 284 (526)
Q Consensus 212 --~A~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (526)
-|.+.++.+-..+ +..-.......+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 2344444441111 22223333445566788999999984 4444433444555566778888899999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHH----------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcC
Q 043068 285 AKMRLNGFKDNVSTHKSMLKGLCV----------------VGKFDQAVGYLRNVMEANMNPDVKSYEVVING---FCKIG 345 (526)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g 345 (526)
.++...| ..| |...++.+++ .+..+...+...+....... + .|-+-+.+ +-..|
T Consensus 250 ~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-g--p~LA~lel~kr~~~~g 322 (932)
T KOG2053|consen 250 SRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-G--PYLARLELDKRYKLIG 322 (932)
T ss_pred HHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-C--cHHHHHHHHHHhcccC
Confidence 9888877 333 3333332221 12223333333333222111 1 12222222 22345
Q ss_pred ChhHHHHHHHHHH-HC---------------------------CCCCCHH-------HHHHHHHHHHHcCC-----HHHH
Q 043068 346 KSDEAISLLKEMR-AR---------------------------GLKPTVF-------SFNAVFRILVENGE-----LDRA 385 (526)
Q Consensus 346 ~~~~A~~~~~~m~-~~---------------------------~~~p~~~-------~~~~li~~~~~~g~-----~~~a 385 (526)
+.+++...|-+-. .. +..++.. -+...+..-...|. -+.-
T Consensus 323 d~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 323 DSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred ChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5555443332211 00 0011110 01111111122232 2222
Q ss_pred HHHHHHcc---cC------CCCcCHH---------HHHHHHHHHHhcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 386 ILLLKQMP---QM------DCLPNFV---------SYNTIICGLCMAKGRMQ---DVEDLVDRMIRSGHNLDFTMYSCLL 444 (526)
Q Consensus 386 ~~~~~~~~---~~------~~~p~~~---------~~~~ll~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~ 444 (526)
..++++.. ++ ++-|+.. +.+.+++.+ +..++.. +|+-+++........ |..+--.|+
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~-rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLi 480 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLW-RKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHH
Confidence 33332221 11 2333433 234555554 4445544 455556665554333 667777889
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Q 043068 445 KGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERT 512 (526)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 512 (526)
+.|+-.|-+..|.++++.|--+++......++. .-....++.|.......++.+.++...
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~--------~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI--------FRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHH--------HHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 999999999999999999877777544443332 223334556666555555555544443
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0035 Score=63.99 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=143.7
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV--LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
...+++.+|++-..++.+.. |+. .|..++.+ +.+.|+.++|..+++.....+ +.|..|...+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence 46788999999888887765 332 23344444 457889999998888877665 458888999999999999999
Q ss_pred hHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHH
Q 043068 212 NAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR----------VDEA 280 (526)
Q Consensus 212 ~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a 280 (526)
+|..++++. +..|+......+..+|.+.+.+.+-.+.--+|.+. .+-+...|=++++.+.+.-. ..-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999988 55677767777778888887776655554444443 22244444445555443211 2335
Q ss_pred HHHHHHHHHcC-CCCCHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 281 KMLMAKMRLNG-FKDNVSTHKSMLKGLCVVGKFDQAVGYL-RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
.+.++.+.+.+ --.+..-.......+...|++++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555555443 1122222223334455677888888887 334443333344445566777788888888888888888
Q ss_pred HCC
Q 043068 359 ARG 361 (526)
Q Consensus 359 ~~~ 361 (526)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 775
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0009 Score=58.08 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 240 GELEEAKKCMNEMMNR---G-CRPNELT-YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
.+.++..+++.+++.. | ..++..+ |..++-+....|+.+.|...+..+...- +-+..+-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3445555555554332 2 3333322 3344445555566666666666655442 2222222222223334566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
|.++|+.+++.++. |..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666666665532 4555554455555555555666666555544 344566666666666666666666666666554
Q ss_pred CCCCcCHHHH-HHHHHHHHhcC--CCHHHHHHHHHHHHHC
Q 043068 395 MDCLPNFVSY-NTIICGLCMAK--GRMQDVEDLVDRMIRS 431 (526)
Q Consensus 395 ~~~~p~~~~~-~~ll~~~~~~~--g~~~~a~~~~~~~~~~ 431 (526)
+.|-...| ..+...++... .+++-+.+++.+.++.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 22433322 22222222221 2445566666666654
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=3.4e-05 Score=62.96 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 043068 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGF 236 (526)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~ 236 (526)
.....+...+...|++++|.+.|+.+...+ |.+...+..+...+.+.|++++|..+++.. .. +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334444445555555555555555555544 445555555555555555555555555544 11 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043068 237 CKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~ 255 (526)
...|++++|.+.|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555544
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=5.6e-05 Score=72.25 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043068 100 DVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEE 179 (526)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (526)
..+...++++.|..++++....++.....+++.+...++-.+|++++++.....+ .+......-...+.+.++++.|++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 3333344455555555544443343444444444444444455555544443321 233334444444444455555555
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 180 FFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
+.+++.+.. |.+..+|..|+.+|.+.|+++.|+..++.+
T Consensus 256 iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555554443 344445555555555555555555444444
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=5.9e-05 Score=61.54 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG 345 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (526)
.+...+.+.|++++|...++.+...+ +.+...+..+...+.+.|++++|..+++...+.+.. +...+..+...|...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 333444444444444444444444444444443221 3333444444444444
Q ss_pred ChhHHHHHHHHHHH
Q 043068 346 KSDEAISLLKEMRA 359 (526)
Q Consensus 346 ~~~~A~~~~~~m~~ 359 (526)
++++|+..|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00079 Score=58.43 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 137 GNVKAAIFWFHQAKQI---E-NGACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
.+.++.++++.++... + ..++.. .|..++-+....|+.+.|...++++..+- |.+...-..-.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4566666666655431 2 223432 35555666667777777777777776653 445444444444455567777
Q ss_pred hHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 212 NAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 212 ~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
+|+++++.+ ..+-|.+++---+...-..|+-.+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776 33345556665555555666666777777777665 455777777777777777777777777777765
Q ss_pred cCCCCCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 043068 290 NGFKDNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEAN 326 (526)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~ 326 (526)
.. |.+...+..+.+.+.-.| +.+-+.++|.+.++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 43 445555555555554443 3445666666666653
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.0002 Score=59.07 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN 379 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 379 (526)
+...+...|++++|...|+.+......+.. .....+...+...|++++|+..++..... ......+......|.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHC
Confidence 334444455555555555555444322211 12223344444455555555555432221 11222333344445555
Q ss_pred CCHHHHHHHHHH
Q 043068 380 GELDRAILLLKQ 391 (526)
Q Consensus 380 g~~~~a~~~~~~ 391 (526)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 555555554443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.00013 Score=69.67 Aligned_cols=124 Identities=12% Similarity=0.160 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (526)
...|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3345555556677777777777777662 33 33345666666667777777777766543 4455555556666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
.++++.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777665332 44567777777777777777776666553
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.9e-06 Score=48.63 Aligned_cols=33 Identities=48% Similarity=0.979 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN 260 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (526)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577788888888888888888888877777776
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00043 Score=57.12 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC--HHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC---LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD--VSTYTTM 200 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 200 (526)
|..++..+ ..++...+...++.+....+ .+ ....-.+...+...|++++|...|+.+.... ..++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 44444444 36666666666666665442 12 1223334455666677777777777776654 1111 1234445
Q ss_pred HHHHHHcCChhhHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 201 IRGYCKMGMIENAKKVFDVMT-VKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
...+...|++++|+..++... .......+....+.+.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666777777777766542 122333455566666667777777666654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1e-05 Score=48.15 Aligned_cols=33 Identities=45% Similarity=0.994 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 365 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 365 (526)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666665555554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=47.71 Aligned_cols=33 Identities=27% Similarity=0.600 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP 259 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 259 (526)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00023 Score=68.41 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM 302 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (526)
+......+++.+....+++.+..++.+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555555666655555543 11112233345666666666666666666555555666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 303 LKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666555555444444444444444433
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.91 E-value=0.00024 Score=57.65 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
..-.+...+...|++++|.++|+-+.. +.|....|..=+.+.++..|++++|...|......++. |+..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 344556667889999999999999888 45888877777777788889999999999999998865 889999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 448 CEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
...|+.+.|++.|+..+......|
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999999988875444
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.3e-05 Score=46.20 Aligned_cols=32 Identities=34% Similarity=0.762 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 364 (526)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00022 Score=68.51 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068 291 GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN--MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368 (526)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 368 (526)
+.+.+......+++.+....+.+.+..++-+..... ...-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445666677777777777777777777777776641 212233445788888888888888888887777788888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC 412 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 412 (526)
+|.||+.+.+.|++..|.++...|...+...+..|+..-+.+++
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 88888888888888888888877776655556666655555543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00022 Score=53.54 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=39.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
+...+...|++++|..+++++.+..+ .+...+..+...+...+++++|.+.|+...+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence 33344444555555555544443332 122334444444444455555555555444433 333334444444444444
Q ss_pred ChhhHHHHHHh
Q 043068 209 MIENAKKVFDV 219 (526)
Q Consensus 209 ~~~~A~~~~~~ 219 (526)
++++|...+..
T Consensus 83 ~~~~a~~~~~~ 93 (100)
T cd00189 83 KYEEALEAYEK 93 (100)
T ss_pred hHHHHHHHHHH
Confidence 44444444433
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00053 Score=51.32 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG 310 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 310 (526)
.+...+...|++++|.+.+++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 3344444445555555555544443211 22334444444444444555554444444332 222234444444444444
Q ss_pred CHHHHHHHHHHHH
Q 043068 311 KFDQAVGYLRNVM 323 (526)
Q Consensus 311 ~~~~A~~~~~~~~ 323 (526)
+.++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444433
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00065 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+..+..++.+.|+.++|.+.++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0037 Score=58.13 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=36.4
Q ss_pred HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHH
Q 043068 201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKK-GELEEAKKCMNEMMNR----GCRPN--ELTYNAMIYGLCI 273 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~ 273 (526)
+..|...|++..|-+.+.. +...|-.. |++++|++.|++..+. | .+. ...+..+...+.+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 3445555555555444433 33444444 6677777766665432 1 100 1223445555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 043068 274 NGRVDEAKMLMAKMRL 289 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~~ 289 (526)
.|++++|.++|++...
T Consensus 168 l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAK 183 (282)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.0013 Score=53.52 Aligned_cols=98 Identities=9% Similarity=-0.068 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
+......+...+...|++++|.++|+-+...... +..-|..|.-++-..|++++|+..|....... +.++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344444555555556666666666555554322 33444455555555566666666666555544 345555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVME 324 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~ 324 (526)
++...|+.+.|.+.|+..+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55666666666555555444
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00076 Score=53.38 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL--DFTMYS 441 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~ 441 (526)
++..+...+.+.|++++|.+.|+.+.+.. |+ ...+..+...+... |++++|...++.+....+.. ....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 44556666777777777777777776532 22 22333444455444 77888888888777643221 245677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 442 CLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 442 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.+..++.+.|+.++|.+.++++++..+..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 777777888888888888888888776543
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.052 Score=54.20 Aligned_cols=132 Identities=11% Similarity=0.132 Sum_probs=67.7
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC-H----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043068 99 TDVLLSHSLISIAASLLKNSNKLS-D----FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS 173 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (526)
+.+..+-|++-.+.++++.++..+ + ..|+.+...++....+++|.+.|..-.. -...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 344445555555555555544221 1 2455566666666666666666554211 1123444555555
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
+++-+.+...+ |.+....-.+..++...|.-++|.+.|-+-+.+ . ..+..|...+++.+|.++-+.
T Consensus 838 f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-k-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 838 FGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-K-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-H-----HHHHHHHHHHHHHHHHHHHHh
Confidence 54444433332 444555566666667777777766666555422 1 234445555666666655443
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0092 Score=55.70 Aligned_cols=256 Identities=15% Similarity=0.085 Sum_probs=141.1
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCC
Q 043068 61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRG 137 (526)
Q Consensus 61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g 137 (526)
.+..+.++..|+..+..++...|+...+ |..-+..+.--++++++..-.+.....++. ...-.-+++...+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASY------YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhh------hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 3444667889999999999887765333 445555555667777777666544332211 1122222333333
Q ss_pred CHHHHHHHHH---------------HHHhcCC-CCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068 138 NVKAAIFWFH---------------QAKQIEN-GACLYSYNSL-LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM 200 (526)
Q Consensus 138 ~~~~A~~~~~---------------~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 200 (526)
+..+|.+.++ ....... +|.-..|..+ ..++.-.|+.++|.++-..+++.. +.+......-
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vr 209 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhc
Confidence 3333332222 1111111 1222333322 234556788888888888887765 3344333333
Q ss_pred HHHHHHcCChhhHHHHHHhC-CCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 043068 201 IRGYCKMGMIENAKKVFDVM-TVKPNLLA-------------YNTMINGFCKKGELEEAKKCMNEMMNR---GCRPNELT 263 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~-~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~ 263 (526)
..++.-.++.+.|...|++. ...|+... +..-.+-..+.|++..|.+.|.+.+.. +..|+...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 33444567888888888876 44454322 222233455677777777777777654 23344555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
|.....+..+.|+.++|+.-.++..+.. +.-...+..-..++...+++++|.+-+++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666677777777777777665432 111222333344445566677777777666654
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=6.7e-05 Score=55.27 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 137 GNVKAAIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
|+++.|+.+|+++....+. ++...+..+..++.+.|++++|.+++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555544421 1222333345555555555555555555 2222 2223333344555555555555555
Q ss_pred HHH
Q 043068 216 VFD 218 (526)
Q Consensus 216 ~~~ 218 (526)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=3.9e-05 Score=44.07 Aligned_cols=29 Identities=48% Similarity=1.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRG 256 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 256 (526)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00079 Score=64.65 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=57.6
Q ss_pred HHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068 374 RILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN 452 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 452 (526)
..+...|++++|++.|+++++.. |+ ...|..+..++.. .|++++|...++++++.... +...|..+..+|.+.|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIK-LGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 34445566666666666666532 33 3333333333333 36677777777766665433 55566666666777777
Q ss_pred HHHHHHHHHHHHHcCCCccchhhh
Q 043068 453 VENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 453 ~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
+++|+..|++.++.++..+....+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 777777777777666655554444
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0068 Score=56.35 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HHHH
Q 043068 305 GLCVV-GKFDQAVGYLRNVMEA----NMNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-----PTVF-SFNA 371 (526)
Q Consensus 305 ~~~~~-g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ 371 (526)
.|-.. |++++|.+.|++..+. + .+ -..++..+...+.+.|++++|+++|+++...... .+.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5566666666554432 1 10 1223445555666666666666666666543211 1111 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHccc
Q 043068 372 VFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.+-++...|+...|.+.+++...
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 23344455666666666666553
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.0011 Score=61.37 Aligned_cols=129 Identities=13% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
+|..++...-+.+..+.|.++|.+.++.+ ..+...|......-.. .++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666655332 1123333333333222 34444466666655543 244555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 307 CVVGKFDQAVGYLRNVMEANMNPD---VKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666666555543 1111 12555555555555555555555555554
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0013 Score=60.97 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR-VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG 203 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 203 (526)
+|..+++...+.+..+.|..+|.++.+.+. .+..+|-.....-.+ .++.+.|.++|+..++.- +.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 566677777777778888888888764331 234444444444333 456666888888887763 6677778888888
Q ss_pred HHHcCChhhHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 204 YCKMGMIENAKKVFDVM-TVKPN----LLAYNTMINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+.+.|+.+.|..+|++. ..-+. ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888776 22222 246777777777777777777777777664
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00094 Score=64.12 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
..+...|++++|++.|+++...++ .+...|..+..+|.+.|++++|+..++++++.. |.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 344456666666666666665553 345556666666666666666666666666654 55566666666666666666
Q ss_pred hhHHHHHHhC
Q 043068 211 ENAKKVFDVM 220 (526)
Q Consensus 211 ~~A~~~~~~~ 220 (526)
++|...|++.
T Consensus 87 ~eA~~~~~~a 96 (356)
T PLN03088 87 QTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.0009 Score=50.45 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 373 FRILVENGELDRAILLLKQMPQMDC-LPNFVSYNTIICGLCMAK-------GRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~-------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 444 (526)
|..+...|++.....+|+.++..|+ .|+..+|+.++.+.+++. +++-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555556666666655555 556666666665555432 12344555666666666666666666666
Q ss_pred HHHHh
Q 043068 445 KGYCE 449 (526)
Q Consensus 445 ~~~~~ 449 (526)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00014 Score=53.48 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=50.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNL-LAYNTMINGFCKKGELEEAKKCM 249 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 249 (526)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.++++..+..++. .....+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46777888888887776511113445555777777888888888777664333322 34445567777777777777777
Q ss_pred HH
Q 043068 250 NE 251 (526)
Q Consensus 250 ~~ 251 (526)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.7e-05 Score=43.37 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777765
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.0012 Score=49.72 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANM-NPDVKSYEVVINGFC 342 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~ 342 (526)
.+...+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 33333444444444444444444 444444444444433
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.045 Score=51.32 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=95.8
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHH---
Q 043068 224 PNLLAYNTM-INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY--GLCINGRVDEAKMLMAKMRLNGFKDNVS--- 297 (526)
Q Consensus 224 p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 297 (526)
|...+|..+ ..++...|++++|.+.--..++..-. ..+...++ ++.-.++.+.|...|.+.+..+ |+-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 333444333 24555667777777776666554211 12222222 2334566677777777766443 2221
Q ss_pred ----------hHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068 298 ----------THKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364 (526)
Q Consensus 298 ----------~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 364 (526)
.+..-.+-..+.|.+..|.+.|.+.+.. +.+++...|........+.|+.++|+.--++..+.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 1112233456778888888888887764 34556667777777778888888888877777654
Q ss_pred CHHHHHH---HHHHHHHcCCHHHHHHHHHHcccC
Q 043068 365 TVFSFNA---VFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 365 ~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
|....-. -..++...++|++|.+-+++..+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3332222 234455667788888888776653
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00027 Score=48.98 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=48.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.+... |++++|.+.|+++++..+. +...+..+..++.+.|++++|...|+++++..+..|
T Consensus 6 ~~~~~-g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 6 ALYQQ-GDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHC-THHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc-CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34454 9999999999999987644 778899999999999999999999999998887543
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0043 Score=52.89 Aligned_cols=86 Identities=17% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344455555555555555555555554322211 2344555555555555555555555555432 2233444444555
Q ss_pred HHHcCCHHH
Q 043068 306 LCVVGKFDQ 314 (526)
Q Consensus 306 ~~~~g~~~~ 314 (526)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555544333
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.1 Score=52.32 Aligned_cols=328 Identities=16% Similarity=0.107 Sum_probs=184.5
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH----------HHHhcCChhH
Q 043068 107 LISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLG----------VLVRVNSIKL 176 (526)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----------~~~~~g~~~~ 176 (526)
.+++|.+.++.. |.+..|..|...-...-.++.|...|-+.... +-+.....|-. .-+--|++++
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 355566655543 55677877777777777788888877665432 11211111111 1122488999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPN----LLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
|+++|-++-+++ ..+..+.+.|++-.+.++++.-+-..| ...|+.+...+.....+++|.+.|..-
T Consensus 753 aek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 753 AEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988775432 246677888999988888876532222 347888888888888888888888654
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK 332 (526)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (526)
.. -...+.++.+..++++-+.+.+.+ +.+....-.+.+++...|.-++|.+.|-+- +. |
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p--- 881 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P--- 881 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c---
Confidence 32 123456666666666655555443 555566677788888888888887765432 11 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--------------HHHHHHHHcCCHHHHHHHHHHccc----
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFN--------------AVFRILVENGELDRAILLLKQMPQ---- 394 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--------------~li~~~~~~g~~~~a~~~~~~~~~---- 394 (526)
...+.+|...++|.+|.++-++..- |...|.- --|..+-+.|+.-.|-+++.+|.+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2345567777777777776654431 2222211 112334455555555555555543
Q ss_pred CCCCcCHHHHHHHHHHHH--------------hcCCCHHHHHHHHHHHHHC-------CCCCCHHHHH--HHHHHHHhCC
Q 043068 395 MDCLPNFVSYNTIICGLC--------------MAKGRMQDVEDLVDRMIRS-------GHNLDFTMYS--CLLKGYCEEG 451 (526)
Q Consensus 395 ~~~~p~~~~~~~ll~~~~--------------~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~--~l~~~~~~~g 451 (526)
.+.++-..--..++.++. ..+|..++|..+++.-.-. +.--....|. .|..--...|
T Consensus 956 K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg 1035 (1189)
T KOG2041|consen 956 KYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEG 1035 (1189)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 233322221111122211 1135666666544432211 0111233343 3444455679
Q ss_pred CHHHHHHHHHHHHHcCCCccchhhh
Q 043068 452 NVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 452 ~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
.++.|++.--.+.+..-..|+..-+
T Consensus 1036 ~v~~Al~Tal~L~DYEd~lpP~eiy 1060 (1189)
T KOG2041|consen 1036 RVKDALQTALILSDYEDFLPPAEIY 1060 (1189)
T ss_pred hHHHHHHHHhhhccHhhcCCHHHHH
Confidence 9999988876666655545555444
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0057 Score=52.15 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI 338 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 338 (526)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 44567777788888999999999998876532222 457788888888999999999999888886433 566677777
Q ss_pred HHHHhcCChhHHHHH
Q 043068 339 NGFCKIGKSDEAISL 353 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~ 353 (526)
..+...|+...+..-
T Consensus 114 ~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 114 VIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHcCChHhHhhC
Confidence 777777775554433
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0045 Score=62.25 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=87.0
Q ss_pred CCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc--------CChhhHHHHHHhC-
Q 043068 155 GACLYSYNSLLGVLVRVN-----SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM--------GMIENAKKVFDVM- 220 (526)
Q Consensus 155 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~- 220 (526)
..+...|...+++..... ..+.|..+|++.++.. |.....|..+..++... +++..+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355666666666644322 2567777777777765 55556666554444332 1234455544442
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 221 ---TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 221 ---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123345667777666667788888888888888774 57778888888888888888888888887765
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00023 Score=49.89 Aligned_cols=59 Identities=8% Similarity=0.258 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 415 KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
.|++++|.++++++.+..+. +..++..++.+|.+.|++++|.++++++....++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 38999999999999987655 888888999999999999999999999999998655443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0018 Score=54.98 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
.+..+...+...|++++|+..|++.......+ ...++..+..++...|++++|++.+++..... +....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 45667777778888888888888887654322 23577788888888888888888888888764 555666666666
Q ss_pred HHH
Q 043068 203 GYC 205 (526)
Q Consensus 203 ~~~ 205 (526)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 666
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0088 Score=52.35 Aligned_cols=131 Identities=10% Similarity=0.012 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-----hHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS-----THKSML 303 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~li 303 (526)
-+.++.++...|.+.-...++++.++...+-++.....|++.-.+.|+.+.|...|+...+..-..+.. +.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 355666677777888888888888877666677777778888888888888888888765442222222 222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 304 KGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
..|.-.+++..|...+.++...+.. |...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455666666666666655433 4444444333444456666666666666655
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.52 E-value=0.058 Score=48.69 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=33.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYS---YNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
....+...|++++|++.|+++....+.. ... .-.++.++.+.+++++|...|++.++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444455666666666666666554322 111 1234455666666666666666666654
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0011 Score=59.21 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=68.7
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
-..+.++|++|+..|.+++...+ .|.+-|..-..+|.+.|.++.|++-.+..+..+ |.-..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 35567777777777777777664 456666666777777777777777777777665 555667777777777777777
Q ss_pred hHHHHHHhC-CCCCCHHHHHH
Q 043068 212 NAKKVFDVM-TVKPNLLAYNT 231 (526)
Q Consensus 212 ~A~~~~~~~-~~~p~~~~~~~ 231 (526)
+|++.|++. .+.|+-.+|-.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHH
Confidence 777777765 66676665543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.038 Score=49.84 Aligned_cols=175 Identities=10% Similarity=0.088 Sum_probs=92.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 043068 269 YGLCINGRVDEAKMLMAKMRLNGFKDNVSTH---KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK-- 343 (526)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 343 (526)
..+.+.|++++|.+.|+.+...- +-+.... -.++.++.+.+++++|...+++..+..+......|...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 34445666666666666665532 2222222 23455666666666666666666665433222233333333221
Q ss_pred c---------------CC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 344 I---------------GK---SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 344 ~---------------g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
. .+ ..+|++.|+++++. -|+. .-..+|...+..+.+. ..-..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-----la~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-----LAKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-----HHHHH
Confidence 0 11 23455566666554 3443 2234444433333221 00111
Q ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 406 -TIICGLCMAKGRMQDVEDLVDRMIRS--GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 406 -~ll~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
.+..-|.+ .|.+..|..-++.+++. +.+........++.+|.+.|..++|.+....+..
T Consensus 179 ~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 22223444 48888888888888875 2233455677788899999999999888765543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.0006 Score=47.76 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=27.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 170 RVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 170 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
+.|++++|+++|+++.+.. |.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555554 445555555555555555555555555555
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0017 Score=60.20 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMR----LNGFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRNVME----AN-MNPDVK 332 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~ 332 (526)
.|..|.+.|.-.|+++.|+...+.-. +-|-. ..-..+..+..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35555555555666666666554321 11211 1123455566666666777777666655332 11 111233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRAR----G-LKPTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
+..+|.++|.-..++++|+.++.+-... + ..-....+.+|..+|...|..++|+.+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555666666666666776666543221 1 01123455666666666777776666655443
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.01 Score=59.70 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 331 VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444455555555555555554 24455555555555555555555555555554
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0022 Score=59.52 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCH
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVME----ANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRA----RGLK-PTV 366 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~ 366 (526)
..|..+...|.-.|+++.|+...+.-++ .|-. .....+..+.+++.-.|+++.|.+.|+.... .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777778889888876654332 2211 1234677788888888888888888876532 2211 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHccc----C-CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQMPQ----M-DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
...-+|...|.-..++++|+.++.+-.. . ...-....+.+|-.++... |..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-GEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Confidence 3344566666666777888877765432 0 1112345566666665443 777777766655443
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0036 Score=53.49 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCCHHhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 043068 293 KDNVSTHKSMLKGLCV-----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF 367 (526)
Q Consensus 293 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 367 (526)
..+..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3445555555555543 35555556666667777777777777777766543 2111 1110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGL 411 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 411 (526)
+-++..-| -.+-+-|++++++|...|+-||..++..++..+
T Consensus 108 -fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 108 -FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred -HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 00000001 123344566666666666666666666666555
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.13 Score=49.06 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred hcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHcccCCCCcCH----HHHHHHHHH
Q 043068 343 KIGK-SDEAISLLKEMRARGLKPTVFSFNAVF----RILVE---NGELDRAILLLKQMPQMDCLPNF----VSYNTIICG 410 (526)
Q Consensus 343 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~ 410 (526)
+.|. -++|+.+++.+.+-. .-|..+-|.+. ..|.+ ...+.+-+.+-+-+.+.|+.|-. ..-|.+.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 778888888877641 11332222222 22221 23344444444444456665533 334444433
Q ss_pred -HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 411 -LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 411 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
|.-.+|++.++.-.-.-+.+ +.|++.+|..++-+.....++++|..++..+.-
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 22235999998877666665 788999999999999999999999999986643
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0066 Score=51.52 Aligned_cols=62 Identities=18% Similarity=0.035 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRP--NELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
.|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555554332111 112444444555555555555555555443
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.38 E-value=0.056 Score=44.95 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 043068 258 RPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEV 336 (526)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 336 (526)
.|+...-..|..+....|+..+|...|++...--+..|......+.++....+++..|...++++.+.++. .+..+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444455555555555555555555544333444444455555555555555555555555543211 01112333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA 385 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 385 (526)
+...|...|.+.+|+..|+..... .|+...-......+.+.|+.+++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 444555555555555555555443 33333222233334444444443
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0016 Score=58.13 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHH
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKA 141 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 141 (526)
.+++++|+..+..++...|....| |..-+.+|.+-|.++.|++-.+.....|+. .|..|..+|...|++++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVy------ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVY------YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchH------HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445666666666666655543322 555556666666666666666555544433 45555556666666666
Q ss_pred HHHHHHHHHhcC
Q 043068 142 AIFWFHQAKQIE 153 (526)
Q Consensus 142 A~~~~~~~~~~~ 153 (526)
|++.|.+.+..+
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 666665555444
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0052 Score=52.55 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 223 KPNLLAYNTMINGFCK-----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS 297 (526)
Q Consensus 223 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (526)
..+..+|..+++.|.+ .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4566666666666654 36677777777777777777777777777776643 2221 111111111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
. -.-.+.+-|++++++|...|+-||..++..+++.|++.+.
T Consensus 113 ------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0012344455666666666666666666666666655554
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.14 Score=47.89 Aligned_cols=283 Identities=14% Similarity=0.134 Sum_probs=151.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL--VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (526)
.|+-..|.++-.+..+. +..|....-.++.+- .-.|+++.|.+-|+.|...- ..-..-...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHH
Confidence 56666776666554321 123333444444332 33578888888888886431 11111122233333456777777
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHH
Q 043068 214 KKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRG-CRPNELT--YNAMIYGLC---INGRVDEAKMLMA 285 (526)
Q Consensus 214 ~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~ 285 (526)
.++-+.. +..|. ...+...+...|..|+++.|+++++.-++.. +.++..- -..|+.+-. -..+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777665 33333 4467777788888888888888887665432 3333321 122222211 1234445555544
Q ss_pred HHHHcCCCCCHH-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC
Q 043068 286 KMRLNGFKDNVS-THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR-GLK 363 (526)
Q Consensus 286 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~ 363 (526)
+..+. .||.. .-..-..++.+.|+..++-.+++.+-+..+.|+.. . +-.+.+.|+ .+..-+++.... .++
T Consensus 254 ~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 44432 34432 23334566777788888888888777775554432 1 112334443 333333333211 123
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 364 PT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 364 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
|| ...--.+..+-...|++..|..--+.... ..|....|..|.+.-....|+-.++..++.+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33 34445556666677777777666665555 34666666666554333347777777777777765
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.0013 Score=46.19 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Q 043068 401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG-NVENVMQIAHEMVTKKG 468 (526)
Q Consensus 401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~ 468 (526)
...|..+-..+... |++++|+..|++.++..+. +...|..+..+|.+.| ++++|++.+++.++.+|
T Consensus 3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666665 8999999999999887544 6778888888999998 78999999988887654
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.023 Score=44.55 Aligned_cols=56 Identities=21% Similarity=0.104 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 234 NGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555544432 22333444455555555555555555543
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.16 Score=47.73 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILV 377 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 377 (526)
+.+..+.-+...|+...|.++-.+.. .|+-..|-..+.+++..++|++-.++-.. +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445556666777766665544431 35667777777777777777766655332 113466777777777
Q ss_pred HcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043068 378 ENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR 427 (526)
Q Consensus 378 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 427 (526)
+.|+..+|..+...+. +..-+..|.+. |++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~-~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKC-GDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHC-CCHHHHHHHHHH
Confidence 7777777777766621 12233344443 677766655443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.01 Score=46.57 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=49.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---CHHHHHHHHHH
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPP---DVSTYTTMIRG 203 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~ 203 (526)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |. +......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44455566677777777776666554322 2344455566666677777777766666543 22 22223333345
Q ss_pred HHHcCChhhHHHHHHh
Q 043068 204 YCKMGMIENAKKVFDV 219 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~ 219 (526)
+...|+.++|.+++-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5556666666655543
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.0015 Score=45.28 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
+...+.+.|++++|+..|+++.+..+ .+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556666777777777777766553 345666666667777777777777777766553
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.02 Score=50.25 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=103.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
++..+......+..++.|++-. ..+.+.++..+.-.+.+.-...+++++++.. -+.+......|++.-.+.|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcc
Confidence 3333333333455566665432 3456677777777888888888888888765 3567777888888888888
Q ss_pred ChhhHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 209 MIENAKKVFDVM--------TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA 280 (526)
Q Consensus 209 ~~~~A~~~~~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 280 (526)
|.+.|...|++. +..-+..........|.-.+++-.|...|.+....... |...-|.-.-+..-.|+..+|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHH
Confidence 888888888854 22223333334445566678888888888887776433 444444433344456888888
Q ss_pred HHHHHHHHHcCCCCCHHhHH
Q 043068 281 KMLMAKMRLNGFKDNVSTHK 300 (526)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (526)
.+.++.|... .|...+-+
T Consensus 306 iK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 306 LKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHhcc--CCccchhh
Confidence 8888888765 34444433
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.36 Score=49.08 Aligned_cols=310 Identities=11% Similarity=0.091 Sum_probs=151.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI--KLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
.++.-+...+.+..|+++-..+...-... ..+|.....-+.+..+. +++.+..++=+... . -....|..+.+-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 45666667777777777766654322111 45555555555555321 22222222222221 1 23345666666666
Q ss_pred HcCChhhHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Q 043068 206 KMGMIENAKKVFDVMTV-------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG-----------CRPNELTYNAM 267 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~l 267 (526)
..|+.+-|..+++.=+. --+..-+...+.-....|+.+-...++-.+...- .+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 77777777777654210 0122234455556666677766666665554431 00011111111
Q ss_pred HH--------HHHHcCCHHHHHHHHH-HH-HH-cCCCCCHHhHHHHHHHHHHcCCHH---HH-------HHHHHHHHH-c
Q 043068 268 IY--------GLCINGRVDEAKMLMA-KM-RL-NGFKDNVSTHKSMLKGLCVVGKFD---QA-------VGYLRNVME-A 325 (526)
Q Consensus 268 i~--------~~~~~g~~~~a~~~~~-~~-~~-~~~~~~~~~~~~li~~~~~~g~~~---~A-------~~~~~~~~~-~ 325 (526)
++ .+.+.++-.++..-|. +- .+ ..+.+-..........+.+..... +| +++.+.+.. .
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 0111111111111111 00 00 001111112223334444333211 11 111122211 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 326 NMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
+.....-+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.... +.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 222233344455556667788888887777665 46777777778888888888877776666552 23355
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043068 406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIA 460 (526)
Q Consensus 406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 460 (526)
..+..+.+ .|+.+||.+++.+.. +.. -...+|.+.|++.+|.++.
T Consensus 749 PFVe~c~~-~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLK-QGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHh-cccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHHHH
Confidence 55555444 488888888776542 111 4567778888888777764
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.0024 Score=45.34 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=52.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
.+... +++++|.+.++++++.++. ++..|.....++.+.|++++|.+.+++.++.+++.+..
T Consensus 4 ~~~~~-~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQ-EDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhC-CCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444 8999999999999998655 78889999999999999999999999999999866554
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.23 Score=46.40 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=193.0
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh--CCCHHHHHHHHHhcCC---CCHHHHHHHH--HHHHcCCC
Q 043068 66 TNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS--HSLISIAASLLKNSNK---LSDFFISKLI--KAYGDRGN 138 (526)
Q Consensus 66 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~li--~~~~~~g~ 138 (526)
..|..+-++|....+. ..|.+|...++. .|+-..|+++-++... .|....-.|+ +.-.-.|+
T Consensus 67 ~sP~t~~Ryfr~rKRd-----------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~ 135 (531)
T COG3898 67 ESPYTARRYFRERKRD-----------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGD 135 (531)
T ss_pred hCcHHHHHHHHHHHhh-----------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCc
Confidence 3455666666644321 125666666554 5778888888776542 2222222232 33445799
Q ss_pred HHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068 139 VKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV 216 (526)
Q Consensus 139 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 216 (526)
++.|.+-|+.|... |.. --...|.-..-+.|..+.|.+.-+..-... |.-...+...+...|..|+++.|+++
T Consensus 136 ~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 136 YEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred hHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999742 221 122233333446799999999988887765 66678899999999999999999999
Q ss_pred HHhC----CCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 043068 217 FDVM----TVKPNLLA--YNTMINGFC---KKGELEEAKKCMNEMMNRGCRPNELT-YNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 217 ~~~~----~~~p~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
.+.- -+.++..- -..|+.+-. -.-+...|...-.+..+. .||..- -.....++.+.|+..++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 9875 24455432 122322211 123455666665555443 555332 23345678899999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNP-DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 364 (526)
+-+.. |.+.++. +..+.+.|+. +..-++...+. ..+| +..+...+..+-...|++..|..--+..... .|
T Consensus 289 aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~p 360 (531)
T COG3898 289 AWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--AP 360 (531)
T ss_pred HHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cc
Confidence 98764 4433332 2334455553 33223322221 1122 5566777788888899999888877777654 67
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHcccC
Q 043068 365 TVFSFNAVFRILVE-NGELDRAILLLKQMPQM 395 (526)
Q Consensus 365 ~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~ 395 (526)
....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888777776554 49999999999888764
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.038 Score=49.92 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068 363 KPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAK--GRMQDVEDLVDRMIRSGHNLDFTMY 440 (526)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~ 440 (526)
+-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... ....++..++++++..+.. |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3367788888888888999988888888887731 134444444444444332 3456788899999887655 77888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
..|...+...|++.+|...|+.|++..+...+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 88888899999999999999999988875444
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.26 Score=46.32 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLC 412 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 412 (526)
+.+.-|.-+...|+...|.++-.+.. .|+...|..-+.+++..++|++-.++-.. . -++.-|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 44555667778899998888877664 57899999999999999999998876543 2 23467888888865
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068 413 MAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
. .|...+|..++.++ + +..-+..|.+.|++.+|.+..-
T Consensus 249 ~-~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 K-YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred H-CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 5 49999999988872 2 2456778899999999987643
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.044 Score=49.50 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEANMNPDVKSYEV 336 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (526)
|...|..|..+|...|+.+.|..-|.+..+.. +++...+..+..++.... ...++..+|+++...+.. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44555555555555555555555555554432 344444444444433321 133444555555544333 4444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 043068 337 VINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444555555555555555555543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.042 Score=48.17 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
-.....+...|++.+|++.|+.+....+... ..+.-.++.++.+.|+++.|...+++.++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445556677888888888888776543211 3445566777778888888888888877764
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0037 Score=43.79 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=4.6
Q ss_pred hcCCHHHHHHHHH
Q 043068 238 KKGELEEAKKCMN 250 (526)
Q Consensus 238 ~~g~~~~A~~~~~ 250 (526)
..|++++|+..|+
T Consensus 15 ~~~~~~~A~~~~~ 27 (69)
T PF13414_consen 15 QQGDYEEAIEYFE 27 (69)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3333333333333
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.96 E-value=0.38 Score=45.94 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH-HHHH
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN-TIIC 409 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~ 409 (526)
.+|...+++-.+..-++.|..+|-++.+.| +.+++..+++++.-++. |+...|..+|+.-... .||...|- -.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677788788888999999999999888 56788888888887654 7788899999876553 25544432 2333
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
-+.+ .++-+.|..+|+..++. +.-+ ..+|..++.--..-|+...+..+-++|.+.-+..
T Consensus 475 fLi~-inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIR-INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHH-hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 3333 48889999999976654 3323 5689999988899999999999999988887744
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.16 Score=44.57 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 043068 415 KGRMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEEGNVENV 456 (526)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 456 (526)
.|.+..|..-++.+++.=+.. .......++.+|.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 377777777777777642111 123455666677777776644
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.055 Score=44.59 Aligned_cols=68 Identities=18% Similarity=0.438 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFS 368 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 368 (526)
..++..+...|++++|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555556666666666666666665433 566666666666666666666666665532 355665543
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.22 Score=47.30 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCCHH
Q 043068 122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIEN---GACLYSYNSLLGVLVR---VNSIKLAEEFFHQIVKENVVPPDVS 195 (526)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 195 (526)
++.+.-.++-+|....+++..+++.+.+..... ......--...-++-+ .|+.++|++++..++... ..++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChH
Confidence 334445566679999999999999998876421 1112222233445556 789999999999854443 367888
Q ss_pred HHHHHHHHHHHc---------CChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---HH-HHHcC-
Q 043068 196 TYTTMIRGYCKM---------GMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELE----EAKKCM---NE-MMNRG- 256 (526)
Q Consensus 196 ~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m~~~g- 256 (526)
+|..+.+.|-.. ...++|+..|.+. .+.||..+--.++..+...|.-. +..++- .. ..++|
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888888776441 2355666666664 44455443333333333333211 111111 11 11122
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 257 --CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 257 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
-..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1223344455555555566666666666665543
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.88 E-value=0.022 Score=51.82 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----CHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD---VSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----NLLAYNT 231 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ 231 (526)
.|...+..+.+.|++++|...|+.+++.. |.+ ..++..+..+|...|++++|...|+.+ ...| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666666553 222 234555555666666666666666555 1111 1223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+...+...|+.++|.++|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555556666666666655554
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.86 E-value=0.21 Score=41.63 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 043068 294 DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---LKPTVFSFN 370 (526)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 370 (526)
|++.....+..+..+.|+..+|...|++....-..-|......+.++....+++..|...++++-+.+ -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444445555555555555555544443333344444444444444455555555554444331 1111 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccc
Q 043068 371 AVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.+.+.+...|...+|..-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 333444444444444444444444
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.25 Score=49.14 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 043068 330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIIC 409 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 409 (526)
+..+...+...+.+...+.-|-++|..|-.. ..+++.....++|++|..+-++..+ +.||+..- ...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~p--yaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMP--YAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccch--HHH
Confidence 3445555555566667778888888877532 4567788888999999998888877 44554321 111
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 410 GLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 410 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
-++.. .+++||.+ +|.++|+-.+|.++++++...
T Consensus 813 wLAE~-DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAEN-DRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred Hhhhh-hhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 22222 45555543 345556667777777666543
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.029 Score=46.29 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
.++..+...|++++|.++...++... |-|...|..+|.+|...|+..+|.++|++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444555555555555555544 44555555555555555555555555444
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.036 Score=50.50 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSML 303 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li 303 (526)
.|...+..+.+.|++++|+..|+.+++.-.... ...+-.+...|...|++++|...|+.+.+.- -+.....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555667777777766666522110 2345556666666666666666666665432 011223333345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 043068 304 KGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
..+...|+.++|..+|+++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555666666666666666654
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.77 E-value=0.35 Score=46.98 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=115.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
+|.-.-+..+...-++.-++.++. .||..+.-.++ +--......++++++++..+.|- ...+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhh
Confidence 333344555555555555555554 44433222222 22234557788888887765431 0001000
Q ss_pred HHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 312 FDQA-VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PTVFSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 312 ~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
..+. -..++........+-..+-..+..+.-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000 011112222222222333345666667788888888888888754211 12345667888888888888888888
Q ss_pred HHcccCCCCcC--HHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHCCCCCCHHHHH----HH---HH
Q 043068 390 KQMPQMDCLPN--FVSYNTIICGLCMAKGR---------------MQDVEDLVDRMIRSGHNLDFTMYS----CL---LK 445 (526)
Q Consensus 390 ~~~~~~~~~p~--~~~~~~ll~~~~~~~g~---------------~~~a~~~~~~~~~~~~~p~~~~~~----~l---~~ 445 (526)
.+..+... |. ...|+..+-. .+.-++ -..|.+.+.++++.++ .+.-|- .| -.
T Consensus 319 ~kYdDi~l-pkSAti~YTaALLk-aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe~K~LilPPe 394 (539)
T PF04184_consen 319 AKYDDISL-PKSATICYTAALLK-ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLEMKSLILPPE 394 (539)
T ss_pred HHhccccC-CchHHHHHHHHHHH-HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhccCCCCCChH
Confidence 88765322 33 3345544322 121111 1234566777666432 211111 01 11
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHH
Q 043068 446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVD 482 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 482 (526)
.+.+.|| .||+...---++.-.+.+++.+++.|..+
T Consensus 395 hilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe 430 (539)
T PF04184_consen 395 HILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE 430 (539)
T ss_pred HhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence 3456665 66666655555555556777777654433
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.063 Score=46.70 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 043068 197 YTTMIRGYCKMGMIENAKKVFDVMT-------VKPNL-LAYNTMINGFCKKGELEEAKKCMNEMMNRG---CRPNELTYN 265 (526)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 265 (526)
+....+++.+...+++|-..|.+-+ --++. ..|-..|-.+.-..++..|.+.+++--+.+ -.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666655554431 11111 234444555555667777777777644432 112455666
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLM 284 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~ 284 (526)
.|+.+| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 446666655443
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.69 E-value=0.014 Score=41.28 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
..|.+.+++++|+++++.+...++ .+...+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456677778888888877777664 356667777777777788888888887777765
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.45 Score=45.25 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHHHHHHcCChhhHHHHHHhCCCCCCH------HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068 199 TMIRGYCKMGMIENAKKVFDVMTVKPNL------LAYNTMINGFCK---KGELEEAKKCMNEMMNRGCRPNELTYNAMIY 269 (526)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (526)
.++-.|-...+++...++.+.+...|+. ..-...+-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666666322211 111223344445 6777777777777555555566666666665
Q ss_pred HH
Q 043068 270 GL 271 (526)
Q Consensus 270 ~~ 271 (526)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.67 E-value=0.072 Score=43.80 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN 452 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 452 (526)
..-+...|++++|..+|+-+.-.+ |...-|..=+.+.+...+++++|...|......+.. |+..+.....+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344567899999999998877633 444445555556566678999999999887776554 66667777888999999
Q ss_pred HHHHHHHHHHHHHc
Q 043068 453 VENVMQIAHEMVTK 466 (526)
Q Consensus 453 ~~~a~~~~~~m~~~ 466 (526)
.+.|+..|+..+++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888873
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.039 Score=43.75 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHH
Q 043068 257 CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL-NGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 307 (526)
..|+..+..+++.+|+..|++..|.++++...+ -+++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345555555555555555555555555554432 234444455555554443
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.51 E-value=0.26 Score=38.62 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
....++.+.+.|+-|+-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555555555555555555432 23344445555555555555555555555555544
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.48 E-value=0.86 Score=43.62 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR--- 170 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 170 (526)
.|..-...+...++-+.|....+++.+.++..--.+...|.-..+-+.....|+...+.- ..-|. .+..-+.
T Consensus 304 vw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys-~~~s~~~s~~ 378 (660)
T COG5107 304 VWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYS-MGESESASKV 378 (660)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHh-hhhhhhhccc
Confidence 344444555666777788888887765554422223333433444444444444432100 00000 0000000
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM---T-VKPNLLAYNTMINGFCKKGELEEAK 246 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~ 246 (526)
-|+++...+++-.-+ ..=..+|..+++...+..-++.|..+|-+. + +.+++..+++++.-++ .|+..-|.
T Consensus 379 D~N~e~~~Ell~kr~-----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~ 452 (660)
T COG5107 379 DNNFEYSKELLLKRI-----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAY 452 (660)
T ss_pred cCCccccHHHHHHHH-----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHH
Confidence 122221111111100 112345555555555555566666666555 1 3345555555555443 35555566
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 247 KCMNEMMNRGCRPNELTY-NAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
++|+--... -||...| ...+..+...++-+.|..+|+....+ +..+ ..+|..+|+.-..-|+...+..+=+.+.
T Consensus 453 ~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 453 NIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 666543333 2233332 33444555556666666666643322 0111 3455556665566666666555555554
Q ss_pred Hc
Q 043068 324 EA 325 (526)
Q Consensus 324 ~~ 325 (526)
+.
T Consensus 530 e~ 531 (660)
T COG5107 530 EL 531 (660)
T ss_pred HH
Confidence 43
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0092 Score=42.98 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
+..+..++...|++++|++++++.
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444433
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.5 Score=44.81 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV 372 (526)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 372 (526)
....-+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+.++ .+.-|...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3444455566677778899889887766543 4688888888899999999988777766554 35667788
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR 427 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 427 (526)
..+|.+.|+.++|.+++-+.... + -...+|.+. |++.+|.++.-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~-~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRV-GDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHh-ccHHHHHHHHHH
Confidence 89999999999999998876642 1 233455554 777777665543
No 225
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.22 E-value=1 Score=41.74 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 160 SYNSLLGVLVRVNSI---KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 160 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
++..++.+|...+.. ++|.++++.+.... +.....+..-+..+.+.++.+++.+.+.+|
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 455555566555543 34455555554443 223444545555555566666666666665
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.19 Score=49.91 Aligned_cols=217 Identities=12% Similarity=0.084 Sum_probs=114.1
Q ss_pred ChHHHHHHHHhcCC--hhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHH--HHH--
Q 043068 54 GSNIVTKVIYEQTN--PYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDF--FIS-- 127 (526)
Q Consensus 54 ~~~~l~~~l~~~~~--~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~-- 127 (526)
.-+.....+.+-.| +-+-+--++...+.+..|+ -..+++.+.=.|.|.+|.++|++.+..+-. .|+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~--------~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPN--------DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL 671 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch--------HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH
Confidence 33555556655333 2233334444443332222 134566677778888888888887754422 222
Q ss_pred ---HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH------HHHcC--CCCCCHHH
Q 043068 128 ---KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQ------IVKEN--VVPPDVST 196 (526)
Q Consensus 128 ---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~--~~~~~~~~ 196 (526)
-++.-|...|..++-..+..+-.. ...++.--.+...++...|+.++|..+.-+ +.+.+ .-..+..+
T Consensus 672 RMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 672 RMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 233445555555544433332111 001111112344555566666666554211 11111 01234455
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------HH
Q 043068 197 YTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELT-----------YN 265 (526)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----------~~ 265 (526)
...+..-+.+...+.-|-++|.+|+.. ..+++.....+++++|..+-+..-+. .||... |.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHH
Confidence 666666666777888899999988632 24667788889999999887765543 333221 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
..-.+|.++|+-.+|..+++++.
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHhh
Confidence 23344555566666666655553
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.02 Score=41.23 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLN----GF-KDN-VSTHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
+|+.+...|...|++++|+..|++..+. |- .++ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555444321 10 011 3345555555666666666666655544
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.13 E-value=0.01 Score=37.13 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
.+|..+..+|.+.|++++|+++++++++..|+.+.....+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4678888999999999999999999999999877654443
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.99 Score=40.92 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=24.4
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 185 (526)
....|++.+|...|........ .+...--.++..|...|+++.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444555555555555444332 122333344445555555555555555443
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=96.10 E-value=0.14 Score=42.07 Aligned_cols=91 Identities=15% Similarity=-0.012 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
...-+...|++++|..+|.-+.-.++- +..-+..|..++-..+++++|+..|......+ ..|+..+--...+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 333444556666666666655544322 33444555555555666666666665554433 2333333345555666666
Q ss_pred HHHHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVME 324 (526)
Q Consensus 312 ~~~A~~~~~~~~~ 324 (526)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655554
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.10 E-value=0.08 Score=52.13 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068 101 VLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180 (526)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (526)
+..+.|+++.|.++.++.. ++..|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3344455555544443332 344555555555555555555555554321 33444455555555555555
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
.+.....| -++....++.-.|++++..+++.+.
T Consensus 396 ~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERG-------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54444444 1333334444445555555555444
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.07 E-value=0.35 Score=47.75 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (526)
.+.++..+.+.|..+.|+++.++-..+ .....+.|+++.|.++.++ ..+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 445555555555555555543322111 2233345555555544432 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (526)
.|+++-|++.|.+... +..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 5555555555544322 34444455555555555555554444431 23333344444555555555
Q ss_pred HHH
Q 043068 389 LKQ 391 (526)
Q Consensus 389 ~~~ 391 (526)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.98 E-value=0.56 Score=46.98 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
..+.|.+++..+.++- |......-.-.+.+...|++++|.+.|++
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3445555555555442 22222222333444445555555555554
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.95 E-value=1.7 Score=43.66 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV------KSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSF 369 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 369 (526)
..+++...=.|+-+.+++.+.+..+.+--... -.|..++..++. ..+.+.|.+++..+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555555567777777777665553211111 223444444433 34567888888888876 6776655
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHHcccCCC-Cc--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068 370 NAV-FRILVENGELDRAILLLKQMPQMDC-LP--NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445 (526)
Q Consensus 370 ~~l-i~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 445 (526)
... .+.+...|++++|++.|++...... -+ ....+.-+.-.+... +++++|.+.+.++.+.. ..+..+|..+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 443 3556678888888888887654110 01 112222222233344 78888888888888754 335556655554
Q ss_pred HH-HhCCCH-------HHHHHHHHHHHHcCC----CccchhhhHHH
Q 043068 446 GY-CEEGNV-------ENVMQIAHEMVTKKG----RLLKLKNFLTR 479 (526)
Q Consensus 446 ~~-~~~g~~-------~~a~~~~~~m~~~~~----~~~~~~~~~~~ 479 (526)
+| ...|+. ++|.++|.+...... +..+...|...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~R 393 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIR 393 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Confidence 43 567777 888888887754433 34455555433
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=1 Score=46.52 Aligned_cols=252 Identities=12% Similarity=0.118 Sum_probs=144.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 043068 197 YTTMIRGYCKMGMIENAKKVFDVMTVKPNLL--AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN 274 (526)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (526)
...-+..+++...++-|+.+-+.-+..++.. ......+-+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4455677777778888888777765444322 2334445566788888888888776543 2332 234555666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 043068 275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISL 353 (526)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 353 (526)
.+..+--.+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..+.+.+-.++|..+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHH
Confidence 677777778888888874 555566778888888888888766665543 2211 12 34456666667777777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068 354 LKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH 433 (526)
Q Consensus 354 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~ 433 (526)
-.+... +...... .+-..|++++|++++..+.-...-+....|...+ . ....++...++-+......
T Consensus 486 A~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l--~h~P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L--EHDPEETMKILIELITELN 552 (933)
T ss_pred HHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H--hhChHHHHHHHHHHHhhcC
Confidence 554432 2333333 3445688999999888875322223334443333 1 1345555555544443322
Q ss_pred CCCHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 434 NLDFTMYS-----CLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 434 ~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
+++..... .+-..+.-.++++.....++.|.+..+..+.
T Consensus 553 ~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 553 SQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 11111111 1111223345666666666667666655544
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.17 Score=48.91 Aligned_cols=62 Identities=15% Similarity=-0.016 Sum_probs=43.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV---STYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
+...++.+..+|.+.|++++|+..|++.++.+ |.+. .+|..+..+|.+.|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777777777777777777777664 3333 34777777777777777777777765
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.85 E-value=1.2 Score=39.53 Aligned_cols=188 Identities=12% Similarity=0.130 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVI 338 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 338 (526)
...|+.-+ .-.+.|++++|.+.|+.+...- -+-...+...++.++.+.+++++|+...++.....+.....-|-..|
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444443 3446788888888888877542 12233455556777778888888888888877764433333444444
Q ss_pred HHHHhcC-------Chh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHH
Q 043068 339 NGFCKIG-------KSD---EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTII 408 (526)
Q Consensus 339 ~~~~~~g-------~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 408 (526)
.+++..- +.. .|+.-|++++++ -||.. -...|..-...+.. -..-+...|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d-----~LA~~Em~I 173 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLND-----ALAGHEMAI 173 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHH-----HHHHHHHHH
Confidence 4444221 222 333444444433 23321 11112111111111 011233334
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 409 CGLCMAKGRMQDVEDLVDRMIRSGHNLDF---TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
.-+....|.+..|..-+++|++. .+-.. ..+-.+..+|.+.|-.++|.+.-+-+..+.++.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 44444458888899999999886 33233 345566778999999999998876666665544
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.12 Score=48.60 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAY-NTMINGFC 237 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~li~~~~ 237 (526)
+++.+..++.+.+++..|++..+..+..+ ++|.....--..++...|+++.|+..|+++ .+.|+...- +-++.+--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555555566666666666666665555 555555555556666666666666666555 334433322 22333333
Q ss_pred hcCCH-HHHHHHHHHHHH
Q 043068 238 KKGEL-EEAKKCMNEMMN 254 (526)
Q Consensus 238 ~~g~~-~~A~~~~~~m~~ 254 (526)
+.... +...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 32222 223455555544
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.25 Score=46.66 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHh
Q 043068 233 INGFCKKGELEEAKKCMNEMMNR-----GCRP---------NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVST 298 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 298 (526)
.+.|.+.|++..|...|++.... +..+ -...+..+.-+|.+.+++..|+....+.+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34566777777777777665432 0110 11223334444444455555555444444443 344444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 299 HKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
.-.-..+|...|+++.|...|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444444444455555544444443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.68 E-value=1.1 Score=43.72 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=89.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (526)
..-..+|++++++..+.+-. .+..- ......|. .++....+...|-..+=..+..++-+.|+.++|++.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~ 281 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM 281 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence 44578888888887765311 11100 00011111 112222222223333334567777899999999999
Q ss_pred HHHcccCC-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCC--------------
Q 043068 389 LKQMPQMD-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEEGN-------------- 452 (526)
Q Consensus 389 ~~~~~~~~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-------------- 452 (526)
+++|.+.. ...+......|+..+... +.+.++..++.+--+...+.+ ...|+..+-.+...|+
T Consensus 282 ~rdLlke~p~~~~l~IrenLie~LLel-q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ 360 (539)
T PF04184_consen 282 FRDLLKEFPNLDNLNIRENLIEALLEL-QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSP 360 (539)
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHhc-CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCCh
Confidence 99998632 112334556677777766 999999999999754322222 2456665544443333
Q ss_pred -HHHHHHHHHHHHHcCCCccc
Q 043068 453 -VENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 453 -~~~a~~~~~~m~~~~~~~~~ 472 (526)
-..|.+.+++..+.|+..|+
T Consensus 361 ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 361 AEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hHHHHHHHHHHHHHhCCCCch
Confidence 13467889999999987663
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=1.8 Score=40.12 Aligned_cols=224 Identities=14% Similarity=0.138 Sum_probs=113.5
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCC----
Q 043068 237 CKKGELEEAKKCMNEMMNRG--CRPNEL------TYNAMIYGLCING-RVDEAKMLMAKMRLN--------GFKDN---- 295 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~---- 295 (526)
.+.|+.+.|..++.+....- ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566777777666665432 122211 1222222 23344 777776666655332 11222
Q ss_pred -HHhHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043068 296 -VSTHKSMLKGLCVVGKFD---QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 371 (526)
Q Consensus 296 -~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 371 (526)
..+...++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+++.+.+.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245666777887776654 455566666544322 34455555666666888888888888888652 212334444
Q ss_pred HHHHH---HHcCCHHHHHHHHHHcccCCCCcCHH-HH-HHHHHHH--HhcC------CCHHHHHHHHHHHHHC-CCCCCH
Q 043068 372 VFRIL---VENGELDRAILLLKQMPQMDCLPNFV-SY-NTIICGL--CMAK------GRMQDVEDLVDRMIRS-GHNLDF 437 (526)
Q Consensus 372 li~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~-~~-~~ll~~~--~~~~------g~~~~a~~~~~~~~~~-~~~p~~ 437 (526)
++..+ .... ...|...+..+....+.|... .. ..++... +... ++++...++++...+. +.+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44443 3333 345556665555433444442 11 1111111 1111 1244455555533321 233333
Q ss_pred HHHH---HH----HHHHHhCCCHHHHHHHHHHHH
Q 043068 438 TMYS---CL----LKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 438 ~~~~---~l----~~~~~~~g~~~~a~~~~~~m~ 464 (526)
.+-. +| +..+.+.+++++|.+.|+-.+
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 22 334677899999999887543
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.65 E-value=0.4 Score=38.04 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh---------------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQ---------------IENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV 189 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 189 (526)
++..++.++++.|+.+....+.+..=. ....|+..+..+++.+|+..|++..|.++.+...+.-+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 445555555555555555555443211 11224555555555566555666666666655555544
Q ss_pred CCCCHHHHHHHHHHHHH
Q 043068 190 VPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 190 ~~~~~~~~~~li~~~~~ 206 (526)
++-+..+|..|+.-...
T Consensus 84 I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 84 IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=1 Score=36.67 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI 273 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (526)
++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444455555555555544432 344444555555544
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.48 E-value=1.6 Score=38.39 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKMRLN-GFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN-GF 341 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~ 341 (526)
+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333334444444444444444443321 112233333334444444444444444444444432221 111111111 45
Q ss_pred HhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCCC
Q 043068 342 CKIGKSDEAISLLKEMRARGL--KPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSYNTIICGLCMAKGR 417 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~g~ 417 (526)
...|+++.|...+.+...... ......+......+...++.+.+...+....... ++ ...+..+-..+... ++
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 217 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL-GK 217 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc-cc
Confidence 555555555555555533110 0112223333333455566666666666665522 22 33344444443333 56
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 418 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
.+++...+......... ....+..+...+...|..+++...+.+..+..+.
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66676666666653222 2344444444444556677777777777666653
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.36 E-value=0.31 Score=47.08 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 120 KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACL--YSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
+.++..++.+..+|.+.|++++|+..|++..+.++.... .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455678899999999999999999999999888742211 46899999999999999999999999875
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.32 E-value=1.3 Score=36.09 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
++..+.+.+.......+++.+...+. .+....+.++..|++.+ .++.++.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 44444444455555555555554442 34445555555555432 2233333321 0122223345555555555
Q ss_pred HHHHHHHHHHc
Q 043068 382 LDRAILLLKQM 392 (526)
Q Consensus 382 ~~~a~~~~~~~ 392 (526)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555554
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.25 E-value=0.2 Score=44.62 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 043068 223 KPNLLAYNTMINGFCK-----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING----------------RVDEAK 281 (526)
Q Consensus 223 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 281 (526)
+.|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455556555555543 3456666666667777777777777777766653321 223466
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
+++++|...|+.||..+-..+++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 677777777777777777777777766554
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=95.23 E-value=1 Score=43.77 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF 217 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 217 (526)
...+|.++-++..+.+. .|..+...+..+..-.++++.|..+|++....+ |....+|....-...-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44556666666666664 456666666666666666777777777776665 445555655555566667777777777
Q ss_pred Hh-CCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 043068 218 DV-MTVKPNLL---AYNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 218 ~~-~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~ 250 (526)
++ +...|... .....++.|+. ...+.|+++|-
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence 76 34444332 23333444443 33455555553
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.16 E-value=0.69 Score=37.23 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 270 GLCINGRVDEAKMLMAKMRLNGF--KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
...+.|++++|.+.|+.+...-. +-....-..++.+|.+.+++++|...+++.++.++..-..-|-..+.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33455666666666666654410 1122344446666666666666666666666654432223343334443
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=2.1 Score=37.67 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC--CCHHHHHHHH
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMN--PDVKSYEVVI 338 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~~~li 338 (526)
|+.....|...|..+.|-..+++.-+ ....-++++|+++|++.... +-. --...+...-
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 44444555555555555555444322 12334566666666654321 100 0112344445
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHccc---CCCCcCHHHHHHHHHH
Q 043068 339 NGFCKIGKSDEAISLLKEMRAR----GLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQ---MDCLPNFVSYNTIICG 410 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~ 410 (526)
..+.+...+++|-..+.+-... .-.++. ..|-..|-.+....++..|.+.++.-.+ ..-.-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 5666666666665555433211 111121 2355555566667788888888877433 2223456677777777
Q ss_pred HHhcCCCHHHHHHHH
Q 043068 411 LCMAKGRMQDVEDLV 425 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~ 425 (526)
| .. |+.+++..++
T Consensus 238 y-d~-gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DE-GDIEEIKKVL 250 (308)
T ss_pred h-cc-CCHHHHHHHH
Confidence 5 33 7777766554
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.071 Score=33.24 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM 200 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 200 (526)
++..+...|.+.|++++|+++|+++++.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 34455555666666666666666666554 5555555444
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.05 E-value=0.79 Score=36.89 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068 95 YTAITDVLLSHSLISIAASLLKNSN------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168 (526)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (526)
+..-+....+.|++.+|.+.|+... .-.....-.|+.+|.+.|++++|+..+++.++.++...-..|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3334555566666777666666432 2233445567777888888888888888877777543344455555554
Q ss_pred Hh
Q 043068 169 VR 170 (526)
Q Consensus 169 ~~ 170 (526)
+.
T Consensus 93 ~~ 94 (142)
T PF13512_consen 93 SY 94 (142)
T ss_pred HH
Confidence 43
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=3.2 Score=37.82 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=90.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 043068 166 GVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNT---MINGFCKKGEL 242 (526)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---li~~~~~~g~~ 242 (526)
......|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..++..-....+.. -|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 35667899999999999998876 66778888899999999999999999999854333333332 34444454444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHHcCC
Q 043068 243 EEAKKCMNEMMNRGCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNG-FKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 243 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 311 (526)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+.. ---|...-..+++.+.-.|.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444444433 23 55555566677777777777777666554331 12334445555555555553
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=94.76 E-value=3.3 Score=40.37 Aligned_cols=149 Identities=9% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 043068 312 FDQAVGYLRNVMEA-NMNPD-VKSYEVVINGFCK---------IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG 380 (526)
Q Consensus 312 ~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 380 (526)
.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ .-|......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45666667666611 12232 3334333332221 123446666666666664 235666666666666677
Q ss_pred CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q 043068 381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEEGNVENVMQI 459 (526)
Q Consensus 381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 459 (526)
+.+.|...|++... +.||...-......++...|+.++|.+.+++.++..+.-- ..+....++.|+.. ..++|+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 78888888888777 3466433222222222224888888888888766433211 22233333355543 35666666
Q ss_pred HHHHH
Q 043068 460 AHEMV 464 (526)
Q Consensus 460 ~~~m~ 464 (526)
+-+-.
T Consensus 430 ~~~~~ 434 (458)
T PRK11906 430 YYKET 434 (458)
T ss_pred Hhhcc
Confidence 65433
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.70 E-value=2.6 Score=36.44 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068 274 NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL 353 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (526)
.|-+.-|..-|.+..... +.-+.+||-+.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|+++-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHH
Confidence 344444555555554432 3446688888888889999999999999999987664444444444433 45888888877
Q ss_pred HHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH-HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 354 LKEMRARGLKPTVFSFNAV-FRILVENGELDRAILLL-KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 354 ~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
+...-+.. +.|+ |.+| +..-.+.-++.+|..-+ ++..+ .|..-|...|-.+.- |++.+ +.+++++..
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gkiS~-e~l~~~~~a- 224 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKISE-ETLMERLKA- 224 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhccH-HHHHHHHHh-
Confidence 77665542 1122 2222 11122334566666544 33333 445556666655543 44322 233344332
Q ss_pred CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 432 GHNLD-------FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 432 ~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+-.-+ ..||..|..-|...|+.++|..+|+-.+..++
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 11211 35788899999999999999999999888876
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.67 E-value=6.1 Score=40.69 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----HHHcCChhhHHHHHHhCCC-------CCCHHHHHHHHHHHHhcC-
Q 043068 174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRG-----YCKMGMIENAKKVFDVMTV-------KPNLLAYNTMINGFCKKG- 240 (526)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~li~~~~~~g- 240 (526)
...|.+.++...+.| +......+..+ +....|.+.|+.+|+.+-. .-......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 457888888888877 33333333322 3456788888888877611 113334556666666643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--HcCCHH
Q 043068 241 ----ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC--VVGKFD 313 (526)
Q Consensus 241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~ 313 (526)
+.+.|..+|.+.-+.|.+ +...+...+..... ..+...|.++|....+.|. +...-+.+++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 667788888888877644 44433333222222 2457788899988888773 22222222221111 234678
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068 314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362 (526)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 362 (526)
.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 8888888888887 3232222233334444 677777766666666543
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.52 Score=42.21 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-C-CHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN-L-DFTMYS 441 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~ 441 (526)
.|+.-+. +.+.|++..|...|...++.. |+ ...+-.|...++.. |++++|..+|..+.+.-++ | -+..+-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 4655554 356677888888888877642 22 22344455666665 8888888888888775321 1 246777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 442 CLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 442 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
.|..+..+.|+.++|...|+++.++.|..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 8888888899999999999999888886543
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.44 Score=42.65 Aligned_cols=93 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHhC----CC-CCCHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD---VSTYTTMIRGYCKMGMIENAKKVFDVM----TV-KPNLLAYNT 231 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~-~p~~~~~~~ 231 (526)
.|+.-+.. .+.|++..|...|...++.. |.+ ...+..|..++...|++++|..+|..+ +. +.-...+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555533 34555777777777776653 322 223444666666666666666666655 11 112244555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
|..+..+.|+.++|...|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666666666666655
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.55 E-value=3 Score=36.62 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 195 STYTTMIRGYCKMGMIENAKKVFDVMT----VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
..+......+...+++..+...+.... .......+......+...+++..+.+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444444444455444444444331 112223333444444444445555555544444
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=1.1 Score=41.77 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=120.0
Q ss_pred HHhcCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChhhHHHHH-HhC----CCCC---CHHHHHHHHHHHHh
Q 043068 168 LVRVNSIKLAEEFFHQIVKEN-VVPPDVSTYTTMIRGYCKMGMIENAKKVF-DVM----TVKP---NLLAYNTMINGFCK 238 (526)
Q Consensus 168 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~----~~~p---~~~~~~~li~~~~~ 238 (526)
+....+.++|+..+.+.+..- ....-..++..+..+.++.|.+++++..- ..| .... -...|-.+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778877777665431 01112346667777778888777765432 122 1111 12344555555555
Q ss_pred cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHHc
Q 043068 239 KGELEEAKKCMNEMMNR-GCRP---NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-----KDNVSTHKSMLKGLCVV 309 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~ 309 (526)
.-++.+++.+-+.-... |..| .-....++..+..-.+.++++++.|+...+... .....++..+.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55556665554443322 2222 112334455666667777777777776653211 11234677777777777
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 043068 310 GKFDQAVGYLRNVMEA----NMNPDVKSY-----EVVINGFCKIGKSDEAISLLKEMRA----RGLKPT-VFSFNAVFRI 375 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~----~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~ 375 (526)
.|+++|.-+..+..+. ++.--..-| ..|.-++...|....|.+.-++..+ .|-++. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777666554432 222111112 2234455666666666666655432 332221 2234445566
Q ss_pred HHHcCCHHHHHHHHHHccc
Q 043068 376 LVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 376 ~~~~g~~~~a~~~~~~~~~ 394 (526)
|-..|+.+.|+.-|+....
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6667777776666655443
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.50 E-value=7.5 Score=40.97 Aligned_cols=198 Identities=11% Similarity=0.027 Sum_probs=112.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-------hHHHHH-HHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 043068 272 CINGRVDEAKMLMAKMRLNGFKDNVS-------THKSML-KGLCVVGKFDQAVGYLRNVMEA----NMNPDVKSYEVVIN 339 (526)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 339 (526)
....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45688999999998886543232221 222222 2223468889999888877654 23345666777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCHH--HHHHHHHHcccC--CCC----cCHHHHHH
Q 043068 340 GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF-----RILVENGELD--RAILLLKQMPQM--DCL----PNFVSYNT 406 (526)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~--~a~~~~~~~~~~--~~~----p~~~~~~~ 406 (526)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+.. +....|...... +-. +-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998888776542233433332222 2355667332 223333332221 001 22344555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 407 IICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY--SCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 407 ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
++.++.+..+...++..-++-.......|-...+ ..|+..+...|+.++|...+.++......
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5555544333334444444433333333322222 36778888999999999999998776553
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.41 E-value=0.97 Score=35.44 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=60.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHH---HHHHHHHHHHH
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVS---TYTTMIRGYCK 206 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 206 (526)
.-+.+..|+.+.|++.|.+....-+ .....||.-..++.-.|+.++|++-+++.++..+ +.+.. .|..-...|-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHH
Confidence 3456677888888888888776553 4577888888888888888888888887776542 22222 23333455666
Q ss_pred cCChhhHHHHHHhC
Q 043068 207 MGMIENAKKVFDVM 220 (526)
Q Consensus 207 ~g~~~~A~~~~~~~ 220 (526)
.|+-+.|..-|+..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 77778877777654
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.24 E-value=0.062 Score=31.29 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=27.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043068 425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQ 458 (526)
Q Consensus 425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 458 (526)
+++.++..+. +...|..|...|...|++++|++
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence 5677776655 88999999999999999999863
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.23 E-value=2.2 Score=33.67 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=77.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068 308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAIL 387 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 387 (526)
-.|..++..++..+..... +..-+|.+|.-....-+-+-..+.++.+-+ -.|.. ..|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHH
Confidence 3567777777777776642 455566666555544444444555544432 22322 2244444443
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 388 LLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
.+-.+- .+.......++.+..+ |+-+.-.+++..+.+ +-.+++...-.+..+|.+.|+..++.+++++.-++|
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~-~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQ-GKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHT-T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHh-ccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333322 1233445556666555 888888888888876 346788888999999999999999999999999888
Q ss_pred C
Q 043068 468 G 468 (526)
Q Consensus 468 ~ 468 (526)
.
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 6
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.21 E-value=0.48 Score=42.35 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 348 DEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 348 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466677777777777777766677777665554
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=3.6 Score=38.05 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=102.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHH----HHHHHHHhcCC
Q 043068 168 LVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYN----TMINGFCKKGE 241 (526)
Q Consensus 168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~----~li~~~~~~g~ 241 (526)
+...|++.+|-..++++++.. |.|...+.-.=.++.-.|+.+.-...++++ .-.+|...|. .+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888888888875 788888888888888888888888888877 2245544332 33445567888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHcCCHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVVGKFDQAVGY 318 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 318 (526)
+++|++.-++..+.+. .|...-.+....+-..|++.++.++..+-...--..+ ..-|=-..-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999998888877643 3677777788888888888888887765432210000 01111122234556888899988
Q ss_pred HHHH
Q 043068 319 LRNV 322 (526)
Q Consensus 319 ~~~~ 322 (526)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8753
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.16 E-value=5.6 Score=38.19 Aligned_cols=181 Identities=16% Similarity=0.057 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC--HHHH
Q 043068 330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN--FVSY 404 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~ 404 (526)
...+|..++..+.+.|.++.|...+.++...+... +....-.-+..+...|+..+|+..++...+..+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45567777888888888888888888777643111 233444455666777888888888877776322221 1111
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 405 NTIICGLCMA-KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE------GNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 405 ~~ll~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
..+..++... ............ ...-..++..+..-.... +..+++.+.|++..+..+........+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKES------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhhccccccccccccchhhhh------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1111110000 000000000000 000112333333333334 788889999999998887666665556
Q ss_pred HHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHHHHhcC
Q 043068 478 TRVVDALLLMWIVTGGSW--ISRFVFVHQVVVIMERTVEDG 516 (526)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g 516 (526)
+...+..+.........- ......+..++...-+++.-|
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC
Confidence 666665554433222111 245566666777777777433
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.05 E-value=4.2 Score=36.30 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRGCRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
.+.+.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3557788999999999999999887 3322 33456677888899999888877665543
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.04 E-value=5.3 Score=37.42 Aligned_cols=126 Identities=12% Similarity=0.090 Sum_probs=56.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHhHHH-
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGC-----RPNELTYNAMIYGLCINGRVDEAKMLMAKMRL----NGFKDNVSTHKS- 301 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~- 301 (526)
+..++...+.++++++.|+...+... ......|..|...|.+..++++|.-+..+..+ .++..-..-|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44445555555555555555443211 11223455555556666666665555444322 121111111221
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 302 ----MLKGLCVVGKFDQAVGYLRNVME----ANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 302 ----li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
|.-++-..|....|.+..++..+ .|-. ........+.+.|...|+.+.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22233445555555554444332 2211 12233445556666666666666555543
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.88 E-value=2.5 Score=33.20 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 204 YCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
.+..|+++.|++.|.+. . .+.....||.-..++--.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555443 1 122344455555555555555555555544444
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.77 E-value=0.16 Score=29.99 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.72 E-value=5.9 Score=36.91 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--c----CChhHHHHHHHHHHHcC
Q 043068 139 VKAAIFWFHQAKQIENGACLYSYNSLLGVLVR--V----NSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 139 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~ 188 (526)
+++.+.+++.+.+.|.+.+..+|-+..-.... . ....+|.++|+.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 44556788888888887777666554433333 1 23567888888888765
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.64 E-value=3.9 Score=42.13 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIY----G-LCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~a~~~~~~~~~ 289 (526)
...|.++++...+.|.. ..-..+.. + +....+.+.|..+++.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 45677777776666532 22222211 1 3345567777777776655
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.27 E-value=0.23 Score=28.68 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
.+|..++.+|...|++++|+..|++.++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57888899999999999999999999888763
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.25 E-value=0.27 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
..|..+..+|.+.|++++|++.|++.++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46778888999999999999999999887763
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.21 E-value=4.3 Score=33.76 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=23.1
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGAC-LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
++.+..++|+.-|..+.+.|...- +-............|+...|...|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344555555555555554443211 111112222334445555555555555443
No 277
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=2.3 Score=42.42 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=90.8
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068 54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAY 133 (526)
Q Consensus 54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 133 (526)
..+.+++.+..+|-.++||.+- ++|+ . -.++..+-|+++.|.++..+.. ++.-|..|.+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D~d-~---------rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TDPD-Q---------RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CChh-h---------hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHH
Confidence 3456777777777777776543 2222 1 1344566688888888776543 345678888888
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (526)
...|++..|.+.|.+... |..|+-.+...|+-+....+-....+.| ..| ....+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N-----~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KNN-----LAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--ccc-----hHHHHHHHcCCHHHH
Confidence 889999999988887543 4467777777888777777777776666 323 333456678888888
Q ss_pred HHHHHhCC
Q 043068 214 KKVFDVMT 221 (526)
Q Consensus 214 ~~~~~~~~ 221 (526)
.+++.+-+
T Consensus 741 ~~lLi~t~ 748 (794)
T KOG0276|consen 741 LELLISTQ 748 (794)
T ss_pred HHHHHhcC
Confidence 88887764
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.02 E-value=1.3 Score=40.42 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSFNAV 372 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 372 (526)
++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445566666666666666666666666544 666666677777777777776666666644 3566655554443
Q ss_pred HH
Q 043068 373 FR 374 (526)
Q Consensus 373 i~ 374 (526)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.01 E-value=1.8 Score=36.90 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|+...-.+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666666666777777777766666533332 2234555666666666666666666554
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.90 E-value=0.93 Score=41.28 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
++..++..+...|+++.+.+.++++.... |-+...|..++.+|.+.|+...|+..++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 33444444444455555555555554444 44444555555555555554444444443
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.82 E-value=12 Score=37.72 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=80.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHH-HHcCCCHHHHHH
Q 043068 69 YHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKA-YGDRGNVKAAIF 144 (526)
Q Consensus 69 ~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~~~A~~ 144 (526)
+.+...++..+...| ....-|...++.-.+-|..+.+..+|+++.. .+...|...... ....|+.+...+
T Consensus 62 ~~~r~~y~~fL~kyP------l~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 62 DALREVYDIFLSKYP------LCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHhhCc------cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 444455665554433 3344488888888899999999999998763 344455444443 345789999999
Q ss_pred HHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 145 WFHQAKQIENG--ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 145 ~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
.|+.++..-.. .+...|...|..-...+++.....+|+++++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 99988753311 23567888888888889999999999999864
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.78 E-value=0.18 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK 214 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (526)
|++.++.. |.|..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444544 666667777777777777766664
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=14 Score=38.37 Aligned_cols=146 Identities=8% Similarity=-0.023 Sum_probs=79.9
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 043068 99 TDVLLSHSLISIAASLLKNSNKLS-----DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS 173 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 173 (526)
++.+.+.+.+++|..+.+...... ......+|..+...|++++|-...-.|.. -+...|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 566777888888888887654322 23566777777788888888777766653 335555555555555554
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCC-------------------CCCCHHHHHHHHH
Q 043068 174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT-------------------VKPNLLAYNTMIN 234 (526)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------------~~p~~~~~~~li~ 234 (526)
..... .-+.... -..+...|..++..+.. .+...-.++..+-+ ...+...-..|+.
T Consensus 439 l~~Ia---~~lPt~~-~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIA---PYLPTGP-PRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhh---ccCCCCC-cccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 43222 2222111 11234556666655555 22222222222210 0112223344777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043068 235 GFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~ 253 (526)
.|...+++..|+.++-...
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777788888877776655
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.68 E-value=18 Score=39.58 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=84.3
Q ss_pred CChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHH
Q 043068 208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI----YGLCINGRVDEAKML 283 (526)
Q Consensus 208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~ 283 (526)
+++++|+.-+.+++ ...|.-.++.--+.|.+++|+.++ .|+...+..+. ..+.....+++|.-.
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 44555555555543 112222333333445555555544 34544444433 344456667777666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068 284 MAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK--SYEVVINGFCKIGKSDEAISLLKEMRARG 361 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 361 (526)
|+..-+. .-.+.+|..+|++.+|+.+..++.... +.. +-..|+.-+...+++-+|-++..+....
T Consensus 962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 6654221 124566777788888877777664321 222 2256677777788888888777766542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 362 LKPTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 362 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
| ...+..|++...+++|..+-....
T Consensus 1029 --~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 --P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 233445566667777777665544
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.66 E-value=5.3 Score=33.37 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043068 318 YLRNVMEANMNPDVKSYEVVINGFCKIGKS 347 (526)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (526)
.++.+.+.++.|+...+..+++.+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 334444445555555555555555555543
No 286
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.01 E-value=14 Score=36.57 Aligned_cols=176 Identities=13% Similarity=0.129 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM 200 (526)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 200 (526)
+++.-.-+++..++......-...+..+|...| .+-..|-.++..|... ..++-..+++++++.. -.|++.-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHH
Confidence 344445567777777777777777777777666 5666777777777776 5566667777777664 3344445555
Q ss_pred HHHHHHcCChhhHHHHHHhC--CCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 043068 201 IRGYCKMGMIENAKKVFDVM--TVKP---N---LLAYNTMINGFCKKGELEEAKKCMNEMMNR-GCRPNELTYNAMIYGL 271 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~--~~~p---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 271 (526)
+.-|-+ ++.+++..+|.++ .+-| + ...|.-+...- ..+.+..+.+..+.... |..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 6777777777665 1111 1 11344333311 34556666666555443 3333445555566667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
....++++|++++..+.+.. ..|......++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 77777788887777766654 3444444444443
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.58 E-value=4.7 Score=34.32 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CCH----HH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYEVVINGFCKIGKSDEAISLLKEMRARGLK---PTV----FS 368 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~----~~ 368 (526)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+....--. ++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555666666666666666666555432222 223445555555566666666555554332111 111 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 369 FNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
|..+ .+...+++.+|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234566776666665554
No 288
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.55 E-value=20 Score=37.58 Aligned_cols=407 Identities=12% Similarity=0.136 Sum_probs=206.4
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHhcCCCCCCCCCcC-ChhhHHHHHHHHHhCCCHHHHHHHHHhcC------CCCHH--H
Q 043068 56 NIVTKVIY-EQTNPYHALFFFNWASNPNPNPNKYHH-TTPCYTAITDVLLSHSLISIAASLLKNSN------KLSDF--F 125 (526)
Q Consensus 56 ~~l~~~l~-~~~~~~~Al~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~--~ 125 (526)
-.++++|. ...+.+.|...++++...... ..+.. -..+...+++++.+.+... |...+++.. ..... .
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 35666666 478899999999988654322 12221 1234556677777777666 888777533 12222 3
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHcCC--------CC
Q 043068 126 ISKL-IKAYGDRGNVKAAIFWFHQAKQIE---NGACLYSYNSLLGVLV--RVNSIKLAEEFFHQIVKENV--------VP 191 (526)
Q Consensus 126 ~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~--------~~ 191 (526)
|..+ +..+...+++..|++.++...... ..+-+.++-.++.+.. +.+..+++.+..+++..... -+
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 333334489999999998876533 2233555555555544 34556777777776633210 13
Q ss_pred CCHHHHHHHHHHHHH--cCChhhHHHHHHhC-------CCCC--------------------------CHHHH-------
Q 043068 192 PDVSTYTTMIRGYCK--MGMIENAKKVFDVM-------TVKP--------------------------NLLAY------- 229 (526)
Q Consensus 192 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~~-------~~~p--------------------------~~~~~------- 229 (526)
|-..+|..+++.++. .|+++.+.+.++++ ...+ ....|
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~ 300 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY 300 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence 456778777777654 67766776666554 1111 11111
Q ss_pred --HHHHHH--HHhcCCHHHHHHHHHHHHHc--------CCCCC--------HHHHHHHHH---------HHHHcCCHHHH
Q 043068 230 --NTMING--FCKKGELEEAKKCMNEMMNR--------GCRPN--------ELTYNAMIY---------GLCINGRVDEA 280 (526)
Q Consensus 230 --~~li~~--~~~~g~~~~A~~~~~~m~~~--------g~~p~--------~~~~~~li~---------~~~~~g~~~~a 280 (526)
.-++.+ .+..+..++|.+++++..+. ...+. ...|...+. ..+-.+++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 112222 23345554665555543221 11111 111222222 22446889999
Q ss_pred HHHHHHHHHcCC-CCC-------HHhHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHH----HHH
Q 043068 281 KMLMAKMRLNGF-KDN-------VSTHKSMLKGLCVVGKFDQAVGYLR--------NVMEANMNPDVKSYEVV----ING 340 (526)
Q Consensus 281 ~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l----i~~ 340 (526)
...++.+.+..- .|+ +.++....-.+...|+.+.|+..|. .....+...+...+..+ |.-
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 999998875321 111 2233333334456799999999997 44444444444333221 112
Q ss_pred HHhcCChhH--HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHHHcCC--HHHHHHHHHHcc-----cCCCCcCHHHHHHH
Q 043068 341 FCKIGKSDE--AISLLKEMRAR-GLKP--TVFSFNAV-FRILVENGE--LDRAILLLKQMP-----QMDCLPNFVSYNTI 407 (526)
Q Consensus 341 ~~~~g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g~--~~~a~~~~~~~~-----~~~~~p~~~~~~~l 407 (526)
+......++ +.++++.+... .-.| +..++..+ +.++..... ..++...+.+.. +.+..--....-.+
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 222223333 67777766542 1122 22333333 333332211 123333333222 11111111112223
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCC-C--CHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHH
Q 043068 408 ICGLCMAKGRMQDVEDLVDRMIRSGHN-L--DFTMYSC-----LLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~~~~~~~~-p--~~~~~~~-----l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
+....- .|+..+..+........-.+ | ....|.. +...|...|+.++|.....+...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333233 37887766665543332111 2 3445633 34457778999999998876643
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.41 E-value=0.51 Score=27.75 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555544
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.83 E-value=8.6 Score=32.08 Aligned_cols=135 Identities=11% Similarity=0.240 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-HHHHHHH
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV-SYNTIIC 409 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~ 409 (526)
..|...++ +.+.+..++|+.-|.++.+.|...-+. .--.......+.|+...|...|.++-...-.|-.. ....|-.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 356778888888888888776542111 11112234567888899999998887643333322 1222222
Q ss_pred HH-HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 410 GL-CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 410 ~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
+| ...+|.+++...-.+-+-..+-+.....-..|.-+-.+.|++.+|.+.|+.+..-.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 21 22358888888888777655544455566778888889999999999998887733
No 291
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.52 E-value=21 Score=36.02 Aligned_cols=359 Identities=11% Similarity=0.004 Sum_probs=184.2
Q ss_pred cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHH-hCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHcCC
Q 043068 65 QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLL-SHSLISIAASLLKNSN------KLSDFFISKLIKAYGDRG 137 (526)
Q Consensus 65 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g 137 (526)
.|..+.+.++|++.... ++.+...|.....-+. ..+..+..++.|+++. ..+...|...|..--..+
T Consensus 92 lg~~~~s~~Vfergv~a------ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk 165 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQA------IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK 165 (577)
T ss_pred hhhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc
Confidence 56778899999999864 3455666666554444 4677777888888654 345567888888878889
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---c------CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR---V------NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
++.....+|++.++.. ..-|+.....|.+ . ...+++.++-....++ ......+
T Consensus 166 s~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~~~~ 227 (577)
T KOG1258|consen 166 SWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--------------SKITHSQ 227 (577)
T ss_pred cHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhccccc
Confidence 9999999999987632 3344444433332 1 1122222222111110 0000011
Q ss_pred C-hhhHHHHHHhCC-CCCCHH-HHHH-------HHHHHHhcCCHHHHHHHHHHHHHcC---CC----CCHHHHHHHHHHH
Q 043068 209 M-IENAKKVFDVMT-VKPNLL-AYNT-------MINGFCKKGELEEAKKCMNEMMNRG---CR----PNELTYNAMIYGL 271 (526)
Q Consensus 209 ~-~~~A~~~~~~~~-~~p~~~-~~~~-------li~~~~~~g~~~~A~~~~~~m~~~g---~~----p~~~~~~~li~~~ 271 (526)
. .+......+... ..+... ..+. .-.++-......+....|++-+..- ++ ++..+|..-+.--
T Consensus 228 ~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~ 307 (577)
T KOG1258|consen 228 EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFE 307 (577)
T ss_pred ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhh
Confidence 1 111111111111 011100 0111 1111222222333333333333321 11 2455677777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043068 272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAI 351 (526)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 351 (526)
...|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+..++-...+--.-....-..|++..|.
T Consensus 308 i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 7788888888887776421 111223444444444555777777777666555433322222222222334457888888
Q ss_pred HHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHH---HHHHHcccCCCCcCH--HHHHHHHHHHHhcCCCHHHHHHHH
Q 043068 352 SLLKEMRARGLKPTVFS-FNAVFRILVENGELDRAI---LLLKQMPQMDCLPNF--VSYNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 352 ~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
.+++.+.+.- |+..- -..-+....+.|+.+.+. +++....+....+.. ..+.-...--..-.++.+.|..++
T Consensus 387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l 464 (577)
T KOG1258|consen 387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIIL 464 (577)
T ss_pred HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887762 44321 122234455677777776 444443332111111 111111111112237888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068 426 DRMIRSGHNLDFTMYSCLLKGYCEEG 451 (526)
Q Consensus 426 ~~~~~~~~~p~~~~~~~l~~~~~~~g 451 (526)
.++.+. .+++...|..+++.....+
T Consensus 465 ~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 465 LEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 888875 4557777888777766554
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.41 E-value=0.49 Score=26.86 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 440 YSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
+-.+..++.+.|++++|.+.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445677888889999999999998888763
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.23 E-value=5.6 Score=33.99 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCRPN-----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (526)
-+.+.|++++|..-|.+.+.. +++. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345567777777777666655 2211 2234444455666677777766666666554 22333333445566666
Q ss_pred CCHHHHHHHHHHHHHcC
Q 043068 310 GKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~~ 326 (526)
..++.|+.-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77777777777776653
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.09 E-value=5.2 Score=36.71 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=52.3
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 043068 292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN---MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFS 368 (526)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 368 (526)
.+....+...++..-....+++.++..+-++...- ..++... ...++.+ -.-++++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34444444555555555556666666555554321 0111111 1112222 22355566666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
++.+|+.+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666666555543
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.08 E-value=48 Score=39.50 Aligned_cols=150 Identities=10% Similarity=0.033 Sum_probs=95.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGA--CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
.+..+-.+.+.+..|+-.++.-.....+. ....|-.+...|...+++|....+...-.. .|+ ....+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 45556667888999999888741111111 123344444589999999988887764222 222 334455667
Q ss_pred HcCChhhHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 043068 206 KMGMIENAKKVFDVM-TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN-AMIYGLCINGRVDEAKM 282 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~ 282 (526)
..|+++.|..-|+.+ +..|+ ..+++-++......|.++..+-..+-.... ..+....++ .-+.+--+.++++....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 789999999999998 55555 667888888888888888888766665544 122222232 23344466777777666
Q ss_pred HHH
Q 043068 283 LMA 285 (526)
Q Consensus 283 ~~~ 285 (526)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 654
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.59 E-value=11 Score=31.22 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=5.4
Q ss_pred cCCHHHHHHHHHHH
Q 043068 309 VGKFDQAVGYLRNV 322 (526)
Q Consensus 309 ~g~~~~A~~~~~~~ 322 (526)
.|++.+|..+|+++
T Consensus 57 r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 57 RGDWDDALRLLREL 70 (160)
T ss_pred hCCHHHHHHHHHHH
Confidence 33333333333333
No 297
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.52 E-value=1.9 Score=37.19 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-----CCCCCHHHHHHHHHH
Q 043068 161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-----TVKPNLLAYNTMING 235 (526)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~li~~ 235 (526)
.+..++.+.+.+++++++...++-++.. |.|..+-..++..+|-.|++++|..-++-. ...+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888888888888887776 777778888888888888888887766654 223345566666654
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.43 E-value=32 Score=36.56 Aligned_cols=223 Identities=14% Similarity=0.083 Sum_probs=119.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHH-HHHcCChhhHHHHHHhC-------CCCCCHHHHHHH
Q 043068 168 LVRVNSIKLAEEFFHQIVKENVVPPDV-------STYTTMIRG-YCKMGMIENAKKVFDVM-------TVKPNLLAYNTM 232 (526)
Q Consensus 168 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l 232 (526)
.....++++|..+..++...-+ +|+. ..++.|-.. ....|++++|.++-+.. ...+.+..+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456889999998888765421 1111 134433322 23468888888777654 123456677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHcCCH--HHHHHHHHHHHHc---CCC---CCHHhH
Q 043068 233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI-----YGLCINGRV--DEAKMLMAKMRLN---GFK---DNVSTH 299 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~ 299 (526)
..+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+. .+.+..|...... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999887766543233433333222 234456633 2233333332221 101 122344
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHH
Q 043068 300 KSMLKGLCVV-GKFDQAVGYLRNVMEANMNPDVKSY--EVVINGFCKIGKSDEAISLLKEMRARGLKPT----VFSFNAV 372 (526)
Q Consensus 300 ~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l 372 (526)
..+..++.+. +...++..-++--......|-.... ..|+......|+.++|...+.++......++ ..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555541 1112222222222222222222222 3677888899999999999999876543332 1111222
Q ss_pred HH--HHHHcCCHHHHHHHHHH
Q 043068 373 FR--ILVENGELDRAILLLKQ 391 (526)
Q Consensus 373 i~--~~~~~g~~~~a~~~~~~ 391 (526)
+. .-...|+..++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 22356888777776665
No 299
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=19 Score=33.60 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=106.8
Q ss_pred HHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH--HHHHHHHHHcCCHH
Q 043068 205 CKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE--LTY--NAMIYGLCINGRVD 278 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~--~~li~~~~~~g~~~ 278 (526)
.-.|+..+|-..++++ ..+.|...++.-=+++.-.|+.+.-...+++.... ..+|. .+| ....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467778877777776 55668888888888899999999999999988765 12232 333 33444556789999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043068 279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNPDVKSYEVVINGFCKIGKSDEAISLLK 355 (526)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (526)
+|++.-++..+.+ +.|.....+....+--.|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988776 677888888889999999999998877653321 000011123233345566689999999997
Q ss_pred HH
Q 043068 356 EM 357 (526)
Q Consensus 356 ~m 357 (526)
.=
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.20 E-value=1.1 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 437 FTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 437 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
..+++.|...|...|++++|.+++++.++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999887653
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=8.4 Score=38.71 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=77.3
Q ss_pred cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 207 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
.|+++.|..++-.++ ...-+.++..+.+.|-.++|+++- ..|| .-| ....+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s-------~D~d-~rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS-------TDPD-QRF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC-------CChh-hhh----hhhhhcCcHHHHHHHHHh
Confidence 455555555443332 223334555555555555555432 1111 111 223355666666666554
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|..
T Consensus 663 ~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 663 A------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred h------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 3 3445566677777777777777666655432 445555566666665555555555544421
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
|....+|...|+++++.+++.+-
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhc
Confidence 22233455567777776666543
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.80 E-value=11 Score=30.54 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=7.8
Q ss_pred HhcCChhHHHHHHHHHHH
Q 043068 169 VRVNSIKLAEEFFHQIVK 186 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~ 186 (526)
...|++++|+++|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444433
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.55 E-value=26 Score=34.24 Aligned_cols=345 Identities=11% Similarity=0.138 Sum_probs=155.8
Q ss_pred HHHhCCCHHHHHHHHHhcCC---CCHH------HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HH
Q 043068 101 VLLSHSLISIAASLLKNSNK---LSDF------FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV--LV 169 (526)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~ 169 (526)
.+-+.++++++..+|.+... .++. .-+.++.+|.. .+.+.....+....+.. | ...|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 34567777777777765432 2222 22345555543 34444444444443332 2 2334444433 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCCC-----------CCHHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCCHHHH
Q 043068 170 RVNSIKLAEEFFHQIVKE--NVVP-----------PDVSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPNLLAY 229 (526)
Q Consensus 170 ~~g~~~~A~~~~~~~~~~--~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 229 (526)
+.+.+++|.+.+....+. +.-+ +|...-+..++++...|.+.++..+++++ ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567777777776666543 1111 12222334555666666666666666665 223455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 230 NTMINGFCKKGELEEAKKCMNEMMNR---GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
+.++-.+++ ..|-++.+. .+-|+ |-.++-.|.+.=. .++.-.=..+.|.......++...
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHH
Confidence 655544443 223333221 11121 1222222222110 000000001233333333333333
Q ss_pred HHcC--CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHc
Q 043068 307 CVVG--KFDQAVGYLRNVMEANMNPDVK-SYEVVINGFCKIGKSDEAISLLKEMRARGLKP----TVFSFNAVFRILVEN 379 (526)
Q Consensus 307 ~~~g--~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~ 379 (526)
.-.. +..--.++++.-...-+.|+.. ....++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111122222222333334322 22333333433 4455544444443221111 245778888888888
Q ss_pred CCHHHHHHHHHHcccCCCCcCHHHH-------HHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---
Q 043068 380 GELDRAILLLKQMPQMDCLPNFVSY-------NTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG--- 446 (526)
Q Consensus 380 g~~~~a~~~~~~~~~~~~~p~~~~~-------~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--- 446 (526)
++..+|.+.+.-+.- +.|+...- ..+-+..|.. .-+...=..+|+.....++. .-.....|+.+
T Consensus 312 ~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHH
Confidence 888888888877665 23443321 1222233311 12334445556666554433 22233334433
Q ss_pred HHhCCC-HHHHHHHHHHHHHcCCCcc
Q 043068 447 YCEEGN-VENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 447 ~~~~g~-~~~a~~~~~~m~~~~~~~~ 471 (526)
+.+.|. -++|+++++..++-...+-
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ 414 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDI 414 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccH
Confidence 455665 7888888888877665333
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=5.2 Score=36.69 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=77.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHH
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVME----------ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---LKPTVFS 368 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~ 368 (526)
+.++|.....++.-....-.+-. .|......+...++..-...++++.++..+-+++..- ..|+. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 45555555555543333322221 2333344455556666566677888888877776431 11221 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG 432 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~ 432 (526)
-...++.|. .-+.++++.++..=+..|+.||..+++.+|+.+.+. +++.+|.++.-.|+...
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~-~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK-ENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHHH
Confidence 223333333 346678888888888888888888888888888775 88888888777776553
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=36 Score=35.92 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 408 ICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
+..++.. .+.+.+..+.+..- .. ++..|-.++..+.+.+..+.-.+...+.
T Consensus 712 ~~~~~q~-~d~E~~it~~~~~g---~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 712 MLYFQQI-SDPETVITLCERLG---KE-DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHh-hChHHHHHHHHHhC---cc-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 3334443 67777777766653 33 7788888888888888666555554444
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.28 E-value=0.21 Score=40.90 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH 182 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (526)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555555555544433445555566666666555555555444
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.27 E-value=1 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 438 TMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.+|..+...|.+.|++++|...|++.++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677788888889999999999988877654
No 308
>PRK09687 putative lyase; Provisional
Probab=88.15 E-value=22 Score=32.95 Aligned_cols=187 Identities=10% Similarity=0.083 Sum_probs=79.2
Q ss_pred CChhhHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-----hhHHHHHHhCCCCCCH
Q 043068 156 ACLYSYNSLLGVLVRVNSI----KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI-----ENAKKVFDVMTVKPNL 226 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~p~~ 226 (526)
++...-...+.+++..|+. .++...+..+... .++..+-...+.++...+.- ..+...+...-..++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence 3444444555556666543 3455555555332 24455555555555444321 1222223222112344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
..-...+.++++.|+ .+++..+-.+.+. ++...-...+.++.+.+ ....+...+..+.. .++..+....+.+
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 444444555555554 3444444444432 23333333333443332 12234444444332 3344445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
+.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+..+.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555 23444333333332 1 122344455555553 45555555544
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.96 E-value=30 Score=34.33 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 043068 224 PNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSML 303 (526)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 303 (526)
-|-...-+++..+..+..+.-.+.+..+|..-| -+-..|..++.+|... ..++-..+++++.+..+ .|++.-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355556677777777777777777777777764 2556677777777776 45666777777766542 3344444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 043068 304 KGLCVVGKFDQAVGYLRNVMEANMNP--D---VKSYEVVINGFCKIGKSDEAISLLKEMRAR-GLKPTVFSFNAVFRILV 377 (526)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 377 (526)
..|-+ ++...+...|.++...-++. + -..|..+...- ..+.+....+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 54444 66777777777766542221 0 11343333211 23555566666555433 33333444555555666
Q ss_pred HcCCHHHHHHHHHHcccC
Q 043068 378 ENGELDRAILLLKQMPQM 395 (526)
Q Consensus 378 ~~g~~~~a~~~~~~~~~~ 395 (526)
...++++|++++..+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 677777777777766664
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.81 E-value=24 Score=32.98 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCK--IG----KSDEAISLLKEMRARGL---KPTVFSFNAVFRILVENGEL 382 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~ 382 (526)
+++...+++.+.+.|+.-+..+|-+....... .. ...+|..+|+.|++... .++..++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555677777777777666555443322222 22 24477888888877632 2344556555443 33333
Q ss_pred ----HHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043068 383 ----DRAILLLKQMPQMDCLPNFV-SYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNV 453 (526)
Q Consensus 383 ----~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 453 (526)
+.+..+|+.+.+.|+..+.. .+.+-+-+++..... ...+.++++.+.+.|+++....|..++-...-.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 45566677777666654432 233333344432122 346778888888888887777777665544333333
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.79 E-value=48 Score=36.56 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH--HHHHHHHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV--SYNTIICG 410 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~ 410 (526)
.|.+..+.+.....+++|.-.|+..-+. ...+.+|..+|+|.+|+.+..++... .+.. +-..|..-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 3455555666677788877777665322 34567788889999998888877642 1211 12344444
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
+...++.-+|-++..+.... ..-.+..|++...|++|.++....
T Consensus 1009 -L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 -LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 34458888888888777542 122344566777788888776543
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.70 E-value=1.7 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIE 153 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 153 (526)
.|..+...|...|++++|+..|+++.+..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34455555555666666666665555443
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.26 E-value=4.7 Score=29.85 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
+.=++.+.++.+...+.-|++....+.+++|.+.+++..|.++|+.++.+- ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence 344566777777777777888888888888888888888888888776442 22444565554
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.18 E-value=75 Score=38.08 Aligned_cols=157 Identities=8% Similarity=0.081 Sum_probs=95.9
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHh-cCCCCHHHHHHHHH
Q 043068 53 LGSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKN-SNKLSDFFISKLIK 131 (526)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~ 131 (526)
+....+..+-.+-+.+.+|+-.++.-. ..+ .........|..+-..|..-++++....+... ...+ . +..-|-
T Consensus 1384 iP~~tLa~aSfrc~~y~RalmylEs~~-~~e--k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil 1457 (2382)
T KOG0890|consen 1384 IPSDTLARASFRCKAYARALMYLESHR-STE--KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQIL 1457 (2382)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHhc-ccc--chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHH
Confidence 344566666677788888888888741 111 01111122344444578888888877777663 2222 2 223444
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHcCCh
Q 043068 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM-IRGYCKMGMI 210 (526)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~ 210 (526)
.....|+++.|...|+.+.+.++ +....++.++......|.++..+-..+...... .+....++.+ +.+--+.+++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcch
Confidence 55678899999999998887773 336777777777777788887777666655443 3333333332 3444667777
Q ss_pred hhHHHHHH
Q 043068 211 ENAKKVFD 218 (526)
Q Consensus 211 ~~A~~~~~ 218 (526)
+.......
T Consensus 1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred hhhhhhhh
Confidence 77766655
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.08 E-value=3.3 Score=30.95 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
+.-+..+-++.+......|++.+..+.+++|.+..++..|.++++-+..+-...
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~ 78 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK 78 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence 444666777777777888999999999999999999999999999888777644
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=86.99 E-value=31 Score=33.43 Aligned_cols=138 Identities=15% Similarity=0.063 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHH
Q 043068 379 NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD----FTMYSCLLKGYCEEGNVE 454 (526)
Q Consensus 379 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 454 (526)
.|+.+++.+.+..+......+...-|-.|+.+-.....+..+|+++++...-. .|. .....--+-...+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58888899988888876677777778888777666667888999998877642 333 233444455667889999
Q ss_pred HHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHHHHhcCCc
Q 043068 455 NVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTG-------GSWISRFVFVHQVVVIMERTVEDGKR 518 (526)
Q Consensus 455 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~g~~ 518 (526)
++..+-.+...+....|-..||...++..........+ -+.++......-.+.+-++++.+|+.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~ 273 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKT 273 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH
Confidence 99999888888888888888888877777765531111 12222333333344555555566654
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.98 E-value=3.6 Score=30.44 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+.-++.+-++.+......|++.+..+-+++|.+..|+.-|.++++-...+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4556777777887788889999999999999999999999999988876655
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.77 E-value=3.1 Score=38.47 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 340 GFCKIGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
.|.++|.+++|+..|...... .| +.+++..-..+|.+...+..|..=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 355555555555555544432 33 4555555555555555555444433333
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.29 E-value=2.2 Score=24.23 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIE 153 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 153 (526)
+..+...|...|++++|++.|++.....
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3445555555555555555555554433
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.19 E-value=8.4 Score=33.13 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred HHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhCCC
Q 043068 376 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS---GHNLDFTMYSCLLKGYCEEGN 452 (526)
Q Consensus 376 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~ 452 (526)
..+.|+ ++|.+.|-.+...+.--++.....+. .|+.. .+.+++..++-+.++. +-.+|+..+.+|+..|.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344455 67788888888776555555555555 44444 7899999999888775 336788999999999999999
Q ss_pred HHHHH
Q 043068 453 VENVM 457 (526)
Q Consensus 453 ~~~a~ 457 (526)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=12 Score=32.98 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=61.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHH
Q 043068 344 IGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE 422 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~ 422 (526)
...+..|+..|.+.+.. .|+. ..|..=+.++.+..+++.+..=-.+.++ +.||.+.-...+.........+++|.
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34555566655444433 4555 3344455556666666666555555554 44666655555554444445666666
Q ss_pred HHHHHHHH----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068 423 DLVDRMIR----SGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 423 ~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
..+.+... ..+++-..++..|..+=.+.=...+..++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 66665532 2344555566666655544444455555443
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.03 E-value=8.1 Score=33.06 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=51.4
Q ss_pred HHHcCCHHHHHHHHHHcccCCCCcCH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043068 376 LVENGELDRAILLLKQMPQMDCLPNF------VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE 449 (526)
Q Consensus 376 ~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 449 (526)
+.+.|++++|..-|...++.- |.. ..|..-..++.+. +.++.|..-..+.++.++. ......--..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 345566666666666665531 221 1222222233343 6777777777777765443 22333333456777
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q 043068 450 EGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~~ 469 (526)
...+++|+.-|+++++..|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 77788888888888877764
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.95 E-value=3 Score=38.64 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=24.0
Q ss_pred HHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 202 RGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
+-|.+.|.+++|+..+... ...| |.+++..-..+|.+...+..|+.-.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 3344555555555555442 3333 4445555555555555554444444333
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.81 E-value=9.6 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
+++|.+.|++..+. .|+...|..-+.... +|-+++.++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 34444444444443 566666666655542 344555555444
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.40 E-value=9.1 Score=32.94 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=8.7
Q ss_pred CHHhHHHHHHHHHHcCCHHHH
Q 043068 295 NVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A 315 (526)
|+..+.+|++.+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 334444444444444444433
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.68 E-value=2.7 Score=25.23 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555544
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.43 E-value=55 Score=35.41 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHhHH--
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRG---CRPNELTYNAMIYGLCINGRV--DEAKMLMAKMRLNGFKDNVSTHK-- 300 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 300 (526)
-|..|+..|...|..++|+++|.+..+.- ..--...+..+++...+.+.. +-++++-....+........+++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37788888888888888888888887631 000112233344444444443 44444443333221111111111
Q ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 301 ----------SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 301 ----------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
.-+-.|.+....+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455556666666777776665555566666666666553
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.42 E-value=5.8 Score=29.73 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
+..+.++.+...+.-|++.+..+.+++|.+.+++..|.++|+.++.+- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHH
Confidence 566667777777777888888888888888888888888888887653 22222565554
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.14 E-value=24 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
.+.+.+.+ ++++...+..+++.+.+.|++....+++.-
T Consensus 17 irSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 17 IRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 33333444 556666666666666666665555544443
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.08 E-value=59 Score=34.14 Aligned_cols=105 Identities=8% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENG-ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (526)
=++.+.+.+.+++|+++-+.....-.. .........|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence 466778889999999887754332211 02456778888899999999999988888643 667788888888887
Q ss_pred CChhhHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043068 208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCK 238 (526)
Q Consensus 208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~ 238 (526)
++......++=.-+-.-+...|..++..+..
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 7766544433222111244567777777765
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.74 E-value=33 Score=33.64 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=51.6
Q ss_pred HHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 043068 201 IRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVD 278 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (526)
...+...|+++.+.+.+... -+.....+...++....+.|++++|...-.-|+...++ ++..........-..|-++
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 34455667777777666555 12234445666666677777777777777766665554 3333333333344456666
Q ss_pred HHHHHHHHHHHc
Q 043068 279 EAKMLMAKMRLN 290 (526)
Q Consensus 279 ~a~~~~~~~~~~ 290 (526)
++.-.++++...
T Consensus 409 ~~~~~wk~~~~~ 420 (831)
T PRK15180 409 KSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhcc
Confidence 776666666543
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=23 Score=32.26 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
..++..+.+.|.+.+|+.+...++
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 456778889999999988776654
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.84 E-value=11 Score=30.71 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=35.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068 342 CKIGKSDEAISLLKEMRARGLKPTVF---SFNAVFRILVENGELDRAILLLKQMPQMD 396 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 396 (526)
...++++++..++..|.-. .|+.. +|. ...+...|++++|+.+|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 3477888888888888754 45433 333 334677888888888888888754
No 334
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.32 E-value=33 Score=29.95 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|+++.|.+-|.+.-+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC
Confidence 3455555555555666666666666555554322222222222 1222355555555555554443
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.12 E-value=2 Score=22.99 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
....+..++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777888888888887765
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.12 E-value=41 Score=30.85 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 043068 299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSF 369 (526)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 369 (526)
+......|..+|.+.+|.++.+..+..+. .+...+-.++..+...|+--.|.+-++++.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44456677777777777777777776643 3666677777777777777777766666632 3555554433
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.52 E-value=38 Score=30.02 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHcccCCCCcCHHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 043068 372 VFRILVENGELDRAILLLKQMPQMDCLPNFVS-------YNTIICGLCMAKGRMQDVEDLVDRMIRSG 432 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~g~~~~a~~~~~~~~~~~ 432 (526)
+...-+..+++.+|+++|++.....+.-+..- +...+..+|. .+.-.+...+++..+..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~--~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK--ADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc--ccHHHHHHHHHHHHhcC
Confidence 33444567788888888887765433322222 2223323332 45555666666666543
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.29 E-value=0.77 Score=37.50 Aligned_cols=86 Identities=12% Similarity=0.295 Sum_probs=52.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566667777777777776555556677777777777777667777666611 11222455666666777
Q ss_pred HHHHHHHHHHccc
Q 043068 382 LDRAILLLKQMPQ 394 (526)
Q Consensus 382 ~~~a~~~~~~~~~ 394 (526)
++++.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 7777766666543
No 339
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.57 E-value=46 Score=30.42 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 365 TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444 (526)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 444 (526)
++.....+...|.+.|++.+|...|-.-.+ |+...+..++..+... |...++--+ .-. .+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~-~~~~e~dlf--------------i~R-aV 148 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTK-GYPSEADLF--------------IAR-AV 148 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHH-TSS--HHHH--------------HHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHh-cCCcchhHH--------------HHH-HH
Confidence 455666777888888888888876644322 3343333344333333 443333111 112 22
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CC----------CccchhhhHHHHHHHH
Q 043068 445 KGYCEEGNVENVMQIAHEMVTK----KG----------RLLKLKNFLTRVVDAL 484 (526)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~----~~----------~~~~~~~~~~~~~~~~ 484 (526)
--|.-.|+...|...++...++ ++ ...+..||...++.++
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~ 202 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTC 202 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHH
Confidence 3466678888888888777766 21 2335677876666654
No 340
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=80.34 E-value=98 Score=34.09 Aligned_cols=349 Identities=11% Similarity=0.044 Sum_probs=165.4
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHH-HHHHH---hCC---CHHHHHHHHHhcCCCCHHHH
Q 043068 54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAI-TDVLL---SHS---LISIAASLLKNSNKLSDFFI 126 (526)
Q Consensus 54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l-~~~~~---~~~---~~~~a~~~~~~~~~~~~~~~ 126 (526)
+...+-.++.....+++|+.+++++....|....- ..+-..+ +..+- ..+ .+.+|..-|++...-.....
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPL 553 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCch
Confidence 33456677788889999999999998776643211 1111111 11111 122 46666666665443322223
Q ss_pred HHHH--HHHHcCCCHHHHHHHHHHHHhcCCC-CChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 127 SKLI--KAYGDRGNVKAAIFWFHQAKQIENG-ACLYS-YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 127 ~~li--~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
..|. -.|.+.|++++=++.+.-..++-+. |-..- -..+ ..++++..... ...+|.-++-
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----~~~~~~~~~~ 616 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL------------VYRLHESLYKH-----RREALVFMLL 616 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH------------HHHHHHHHHHH-----HHHHHHHHHH
Confidence 3333 3466667777776666655543321 21111 0011 11122222111 1112222222
Q ss_pred HHHH---cCChhhHHHHHHhC--C--------CCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043068 203 GYCK---MGMIENAKKVFDVM--T--------VKPNLLA-----YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTY 264 (526)
Q Consensus 203 ~~~~---~g~~~~A~~~~~~~--~--------~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 264 (526)
+... .-...+-+++|+.+ . +.+...+ +..++... .|..---.++|++..+. +|-.+.
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~ 691 (932)
T PRK13184 617 ALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRAL 691 (932)
T ss_pred HHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHH
Confidence 2211 11122223444443 1 1222221 22222221 34444445566666543 244566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH--------HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 265 NAMIYGLCINGRVDEAKMLMAKMRLN----GFKDNV--------STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK 332 (526)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (526)
..+.-..+..|.++-+.+..+.+.+. ..+.+. ..|..-+.+......++++.+.+....... -..
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 768 (932)
T PRK13184 692 ADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTL---ILY 768 (932)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHH---HHH
Confidence 66666678889998888777766532 111111 112222444555556666665444322111 122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRARGLKPT--VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 410 (526)
.+..++.-..-.++.+....+.+.+...-.... ......-|.+|.-..++++|-+++......-...+......|-+.
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (932)
T PRK13184 769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGC 848 (932)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHH
Confidence 334444444445566655555555554321111 123345678888899999999999877654333333322233333
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 043068 411 LCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~~ 430 (526)
+....++-+.|...|..-.+
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 849 YLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHhcCchhHHHHHHhhccc
Confidence 33334666777777766553
No 341
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.21 E-value=10 Score=24.69 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
-.+.-++.+.|++++|.+..+.+++..|.........
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3456678888999999999999988888766554443
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.91 E-value=3.6 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 442 CLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 442 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.|..+|...|+.+.|.++++++++.+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 477899999999999999999996553
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.39 E-value=23 Score=32.18 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK--- 206 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 206 (526)
|.++++.+++.+++.+.-+--+.--+-...+...-|-.|.+.+.+..+.++-....+... ..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHH
Confidence 556666666666665544332211111233444444556666666666666666554321 1122335555544443
Q ss_pred --cCChhhHHHHH
Q 043068 207 --MGMIENAKKVF 217 (526)
Q Consensus 207 --~g~~~~A~~~~ 217 (526)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666555
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.04 E-value=89 Score=32.82 Aligned_cols=222 Identities=13% Similarity=0.142 Sum_probs=93.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHH---
Q 043068 233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNG-FKDNVSTHKSMLKGLCV--- 308 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 308 (526)
...+.-.|+++.|++.+-+ ..+...+.+.+...+..|.-.+-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567889999888766 2223445555555554443222222111 2222111 01112556778888876
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhHHH-----------HHHHH---HHHCCCCC-CHH---HH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYE-VVINGFCKIGKSDEAI-----------SLLKE---MRARGLKP-TVF---SF 369 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-----------~~~~~---m~~~~~~p-~~~---~~ 369 (526)
..+..+|.+++--+....-+.....+. .+-......++++.-+ -++++ +. ++.. +.. ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREII 417 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHHH
Confidence 456778888776665542211111221 1212222222111111 11111 11 1111 111 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHCC-----C
Q 043068 370 NAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR-----------MQDVEDLVDRMIRSG-----H 433 (526)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~-----------~~~a~~~~~~~~~~~-----~ 433 (526)
.....-+...|++++|+.+|+-..+.. .-....|..+......... ...|..+.+.....+ .
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 333445677889999998888877521 1123344444332222122 334444444443221 1
Q ss_pred C-CCHHHHHHHHHH-----HHhCCCHHHHHHHHHHH
Q 043068 434 N-LDFTMYSCLLKG-----YCEEGNVENVMQIAHEM 463 (526)
Q Consensus 434 ~-p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 463 (526)
. -...|+..|+.. +...|++++|++.++++
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 1 123455555543 46799999999887755
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.63 E-value=31 Score=29.21 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 349 EAISLLKEMRARGLKPTVFSFNAVFRIL 376 (526)
Q Consensus 349 ~A~~~~~~m~~~~~~p~~~~~~~li~~~ 376 (526)
+|...|++.... .|+..+|+.-+...
T Consensus 98 kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 344444444333 45555555555544
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.15 E-value=4 Score=22.06 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+|..+...+...|++++|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456677777788888888888877776543
No 347
>PRK10941 hypothetical protein; Provisional
Probab=77.61 E-value=21 Score=32.69 Aligned_cols=68 Identities=9% Similarity=-0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 405 NTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 405 ~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
+.+-.++.+ .++++.|.+..+.++...+. |+.-+.--.-.|.+.|.+..|..-++..++..+..|...
T Consensus 185 ~nLK~~~~~-~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALME-EKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHH-cCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 334444444 49999999999999987554 777788888889999999999999999999999777643
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.38 E-value=34 Score=31.14 Aligned_cols=57 Identities=11% Similarity=-0.112 Sum_probs=22.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 268 IYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 324 (526)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (526)
|.+++..++|.+++.+.-+--+.--+....+...-|-.|.+.+++..+.++-..-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344444455554444433322211112222333333444455555544444444443
No 349
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.30 E-value=1.1e+02 Score=32.26 Aligned_cols=216 Identities=12% Similarity=0.116 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCCHH---HH
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS-------IKLAEEFFHQIVKENVVPPDVS---TY 197 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~---~~ 197 (526)
.+|--|.++|++++|.++..+... ........+...+..+....+ -++...-|++..+.. ...|.+ .|
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~-~~~DpyK~AvY 193 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS-TDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC-CCCChHHHHHH
Confidence 577778899999999999855543 333445677778888876532 235555566665443 111332 23
Q ss_pred HHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGE-----------LEEAKKCMNEMMNRGCRPNELTYNA 266 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (526)
..+ +.|... ..-. . .+..++.-|--+=-.+.+... +++-.+.+.+.-+.-+.+ ....-.
T Consensus 194 ~il--g~cD~~--~~~~---~--~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~ 263 (613)
T PF04097_consen 194 KIL--GRCDLS--RRHL---P--EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLL 263 (613)
T ss_dssp HHH--HT--CC--C-S----T--TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------
T ss_pred HHH--hcCCcc--ccch---H--HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHH
Confidence 322 111110 0000 0 011122222111111111111 122222222222222333 111122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhc-
Q 043068 267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM-NPDVKSYEVVINGFCKI- 344 (526)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~- 344 (526)
....+.-.|+++.|.+++-. ..+...+.+.+...+..|.-.+-.+... ..+..... .|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 23455678999999999877 2233445555554444443222222211 22222110 11125577888888763
Q ss_pred --CChhHHHHHHHHHHHC
Q 043068 345 --GKSDEAISLLKEMRAR 360 (526)
Q Consensus 345 --g~~~~A~~~~~~m~~~ 360 (526)
.++.+|.+.|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4777888888777654
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.24 E-value=4.6 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444445555555555554443
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.22 E-value=63 Score=29.57 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=69.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHhHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELT-------YNAMIYGLCINGRVDEAKMLMAKM----RLNGFKDNVSTHK 300 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~ 300 (526)
+.+-..+.+++++|+..|.+....|+..|..+ ...+...|...|+.....++.... ..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556677888888888888888877666544 345666777777766554444322 2212122334445
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 301 SMLKGLCVV-GKFDQAVGYLRNVMEANMN-----PDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 301 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
+++..+-.. ..++.-+.+....++-..+ .-...-..++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555554432 2344444444443321100 01112245677788888888888766544
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.02 E-value=8.8 Score=21.69 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 353
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.81 E-value=74 Score=30.19 Aligned_cols=118 Identities=10% Similarity=0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK---IGKSDEAISL 353 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 353 (526)
.+.-+.+++++.+.. +.+......++..+.+..+.++..+-++++...... +...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345566777776664 566666777777777777777777778887776443 56667766665544 2235555555
Q ss_pred HHHHHHC------CC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068 354 LKEMRAR------GL----KPT-------VFSFNAVFRILVENGELDRAILLLKQMPQMD 396 (526)
Q Consensus 354 ~~~m~~~------~~----~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 396 (526)
|.+..+. +. .+- ...+..+...+.+.|..+.|..+++.+.+..
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5544321 11 001 1122333344557888888888888887743
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.59 E-value=52 Score=28.30 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 269 YGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
..+...|++++|+.-++......-..+ ..+--.+.......|.+|+|+..++...+.+.. ......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 344555556666555555442210000 111122344455556666666555555443211 1112223345555566
Q ss_pred hhHHHHHHHHHHHC
Q 043068 347 SDEAISLLKEMRAR 360 (526)
Q Consensus 347 ~~~A~~~~~~m~~~ 360 (526)
-++|+.-|++..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666555554
No 355
>PRK09687 putative lyase; Provisional
Probab=73.49 E-value=77 Score=29.34 Aligned_cols=136 Identities=11% Similarity=0.065 Sum_probs=64.6
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 295 NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG-KSDEAISLLKEMRARGLKPTVFSFNAVF 373 (526)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 373 (526)
+..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455555566655554 3444554444442 23334444444444432 23345555555543 23555555666
Q ss_pred HHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 374 RILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
.++.+.|+ ..|...+-+..+.+ +. ....+.++..- |. .+|...+..+.+. .||..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~~--~~~a~~ALg~i-g~-~~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---TV--GDLIIEAAGEL-GD-KTLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---ch--HHHHHHHHHhc-CC-HhHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666 34444444444432 11 22344444443 44 3566666666542 23555444444443
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.37 E-value=8.5 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 357
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.11 E-value=88 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP---NELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
...+|..++..+.+.|.++.|...+.++...+... ++.....-+...-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888877643211 233344445556677788888887777665
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.79 E-value=77 Score=31.45 Aligned_cols=106 Identities=16% Similarity=0.065 Sum_probs=58.1
Q ss_pred HHhcCChhHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHccc-------CCCCcC-----
Q 043068 341 FCKIGKSDEAISLLKEMR---ARGLKPT-----VFSFNAVFRILVENGELDRAILLLKQMPQ-------MDCLPN----- 400 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~---~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~p~----- 400 (526)
+.-.|++.+|.+++...- ..|...+ ...||.+-..+.+.|.+..+..+|.+... .|+.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344566666666665431 1121111 11234444444455555555555554432 233332
Q ss_pred ------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043068 401 ------FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE 449 (526)
Q Consensus 401 ------~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 449 (526)
..+||+=+..+ . .|+.-.|.+.|.+.+.. +.-++..|--|..+|..
T Consensus 330 s~nks~eilYNcG~~~L-h-~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYL-H-SGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHH-h-cCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 34567666443 3 38888888888887765 55578888888888753
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.11 E-value=19 Score=28.69 Aligned_cols=58 Identities=7% Similarity=0.053 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 416 GRMQDVEDLVDRMIRS-GHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
.++.+...+++...+. .+.-+......|.-++.+.|++++++++.+.+++..++.+..
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3455555666666542 122223344445556666666666666666666666554443
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.88 E-value=82 Score=28.55 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHH
Q 043068 301 SMLKGLCVVGKFDQAVGYLRNVMEANMN-----------PDVKSYEVVINGFCKIGKSDEAISLLKEMRARG-LKPTVFS 368 (526)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~ 368 (526)
-+...|...+++.+..++++++...-.. .=...|..-|..|....+-.+-..++++..... --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4555566666666666666665432110 012345556666766666666666666554321 2233332
Q ss_pred HHHHHHH-----HHHcCCHHHHHH
Q 043068 369 FNAVFRI-----LVENGELDRAIL 387 (526)
Q Consensus 369 ~~~li~~-----~~~~g~~~~a~~ 387 (526)
. .+|+- ..+.|++++|..
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHh
Confidence 2 23333 345677776653
No 361
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.64 E-value=88 Score=28.81 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHh-cC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQ-IENGACLYSYNSLLGVLVR-VN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
|..|+. ....+-+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+...-+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 544543 23345677777763221 1222456666666666555 22 333344455555544113567778888888
Q ss_pred HHHHcCChhhHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 043068 203 GYCKMGMIENAKKVFDVM----TVKPNLLAYNTMINGFCKKGELEEAKKCMNE-----MMNRGCRPNELTYNAMIYGL 271 (526)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~~~ 271 (526)
.+++.+++.+-.++++.. +...|...|...|....+.|+..-..++.++ +.+.|+..+...-..+-+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 899999999988888876 2334777888899988999988777666654 23345555655555554444
No 362
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=70.35 E-value=1e+02 Score=29.29 Aligned_cols=169 Identities=11% Similarity=0.128 Sum_probs=78.1
Q ss_pred hHHHHHHHHHh---CCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 043068 94 CYTAITDVLLS---HSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV 167 (526)
Q Consensus 94 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 167 (526)
.++++++.-.. +..++.|...+......+.. -.--+.+.+++.++-+.+..+-+.+... |. .....+..+
T Consensus 131 ~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~l---P~-~vl~aL~~~ 206 (340)
T PF12069_consen 131 MFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHL---PP-EVLYALCGC 206 (340)
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhC---Ch-HHHHHHHHH
Confidence 56666655544 33466666655433322222 2345667777777766655544433321 32 233344444
Q ss_pred HHhcCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C--CCCCHHHHHHHH-HHHHhcCCH
Q 043068 168 LVRVNSI-KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T--VKPNLLAYNTMI-NGFCKKGEL 242 (526)
Q Consensus 168 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~--~~p~~~~~~~li-~~~~~~g~~ 242 (526)
+-...-. .-+..+.+.+.. .+|......++++.+...........++.+ . ...+.....++. ++..-..+.
T Consensus 207 LEh~~l~~~l~~~l~~~~~~----~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~ 282 (340)
T PF12069_consen 207 LEHQPLPDKLAEALLERLEQ----APDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDP 282 (340)
T ss_pred hcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCH
Confidence 4333322 223333333332 267777778888877765554444433333 2 111222222221 222223444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043068 243 EEAKKCMNEMMNRGCRPNELTYNAMIYGLCI 273 (526)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (526)
+....+++++-.. +|...|+.+..=...
T Consensus 283 ~~l~~fle~LA~~---~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 283 QLLRLFLERLAQQ---DDQALFNQLFADLVM 310 (340)
T ss_pred HHHHHHHHHHHcc---cHHHHHHHHHHHHHh
Confidence 5555555555443 234555555444433
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.93 E-value=60 Score=32.02 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=101.1
Q ss_pred HHHHHHcCChhhHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC
Q 043068 201 IRGYCKMGMIENAKKVFDVMTVKPNLLA--YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNEL--TYNAMIYGLCINGR 276 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 276 (526)
+...++.|+.+-+..+++ .|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 6 L~~A~~~g~~~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELDIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 334456788777766665 354555432 234455556677765 444555666655432 11234456667788
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVS---THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS--YEVVINGFCKIGKSDEAI 351 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~ 351 (526)
.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 776655554 33211110 1123344455566654 4445555565554321 112333444566665444
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHH---HHHHHHHHHhcCCCHHHHHHHH
Q 043068 352 SLLKEMRARGLKPT---VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVS---YNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 352 ~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
.+ .+.|..++ ..-.+.| ...+..|+.+-+.-++ +.|..++... ..+.+...+.. |+.+ +.
T Consensus 153 ~L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll----~~ga~~n~~~~~~~~t~l~~A~~~-~~~~----iv 218 (413)
T PHA02875 153 LL----IDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLL----DSGANIDYFGKNGCVAALCYAIEN-NKID----IV 218 (413)
T ss_pred HH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH----hCCCCCCcCCCCCCchHHHHHHHc-CCHH----HH
Confidence 33 34444332 2222333 3345567765544443 3343343221 12233222333 6654 45
Q ss_pred HHHHHCCCCCCHH
Q 043068 426 DRMIRSGHNLDFT 438 (526)
Q Consensus 426 ~~~~~~~~~p~~~ 438 (526)
+.+++.|..++..
T Consensus 219 ~~Ll~~gad~n~~ 231 (413)
T PHA02875 219 RLFIKRGADCNIM 231 (413)
T ss_pred HHHHHCCcCcchH
Confidence 5556677777653
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.89 E-value=26 Score=35.35 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068 105 HSLISIAASLLKNSNKL----SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180 (526)
Q Consensus 105 ~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (526)
.|+...|...+...... ..+..-.|.....+.|...+|-.++.+...... ...-++-.+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHH
Confidence 57777777766654322 223445566667777788888888888776552 3455677788899999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
|++..+.. +.+.+.-+.|...-|+
T Consensus 699 ~~~a~~~~--~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 699 FRQALKLT--TKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHh
Confidence 99998886 6778888888777664
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.52 E-value=79 Score=27.80 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 043068 299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG--LKPTVFSFNAVFRI 375 (526)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 375 (526)
.+..++.+.+.+...+|+...++-++..+. |..+-..++..+|-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556666777777777777666665433 55556667777777788887777666554431 22334456666554
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.39 E-value=74 Score=27.40 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=24.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHccc
Q 043068 339 NGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA-----VFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
..+...|++++|+..++..... |....+.. |.+...+.|.+|+|+..++...+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~ 154 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE 154 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 3455555555555555554432 11112222 22334455555555555555444
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.22 E-value=54 Score=25.82 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 420 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
|..+-++.....++.|++.+...-+++|.+..|+..|.++|+-+..+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~ 117 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ 117 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH
Confidence 455556667777888999999999999999999999999998887776633
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.17 E-value=85 Score=28.03 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACL-YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK 214 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (526)
..++..|+..|.+.+..+ |++ .-|..-+..+.+..+++.+..--...++-. +..+....-+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccccHHH
Confidence 344555555555554444 333 233334444555555555554444444331 222223333344444445555555
Q ss_pred HHHHhC
Q 043068 215 KVFDVM 220 (526)
Q Consensus 215 ~~~~~~ 220 (526)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 554443
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.01 E-value=1.5e+02 Score=30.82 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
....+.++.+-+-.+...-..++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.+.|+.+.+..+-..+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555554444666677778888888888888888877654311 233455556666777777666665555554
No 370
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.86 E-value=1.7e+02 Score=31.46 Aligned_cols=170 Identities=12% Similarity=0.155 Sum_probs=87.0
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 043068 98 ITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLA 177 (526)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 177 (526)
+=..|...|+|+.|.+..+..+..-..++..-...|.+.+++..|-++|.++. ..|..+.--+....+.+.-
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEVaLKFl~~~~~~~L 435 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEVALKFLEINQERAL 435 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHHHHHHHhcCCHHHH
Confidence 34567778999999988776633333455566667788889999998888763 2334444444455555422
Q ss_pred HHHHHHHHHcCCCCCCHHHHHH-----HHHHHH-HcCChh----hHHHHHHh--------C----CCCCCHHHHHHHHHH
Q 043068 178 EEFFHQIVKENVVPPDVSTYTT-----MIRGYC-KMGMIE----NAKKVFDV--------M----TVKPNLLAYNTMING 235 (526)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-----li~~~~-~~g~~~----~A~~~~~~--------~----~~~p~~~~~~~li~~ 235 (526)
..++.+=+++ ++|...+-.. ++..|. +.++.+ ++.+-++. + ...-+-..+.+....
T Consensus 436 ~~~L~KKL~~--lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l 513 (911)
T KOG2034|consen 436 RTFLDKKLDR--LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQL 513 (911)
T ss_pred HHHHHHHHhh--CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Confidence 2222222222 3333333222 222222 223322 22221111 0 111122223344444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
+...|+.+....+-.-|. -|..++..+++.+.+++|++++..
T Consensus 514 ~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666655544443 245566667777777777776543
No 371
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=1e+02 Score=28.82 Aligned_cols=117 Identities=15% Similarity=0.258 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHcccCCCCcC----HH
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEMRA----RGLKPTVFSFNAVFRI-LVENGELDRAILLLKQMPQMDCLPN----FV 402 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~----~~ 402 (526)
..+......||+.|+-+.|++.+++..+ .|.+.|...+..-+.. |....-+.+-++..+.+.+.|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566677777777777776665533 3556565544332222 2222333444444444444443333 22
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043068 403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG 451 (526)
Q Consensus 403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 451 (526)
+|..+ ||..-.++.+|-.+|-+.+..=-.-....|..++.--.-.|
T Consensus 185 vY~Gl---y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 185 VYQGL---YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHHHH---HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
Confidence 33333 33333567777777766554311122334555554433333
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.25 E-value=64 Score=26.28 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHcccCCCCcCHHHHHHH
Q 043068 334 YEVVINGFCKIGKSDEAISLLKEMRARGL-----KPTVFSFNAVFRILVENGE-LDRAILLLKQMPQMDCLPNFVSYNTI 407 (526)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l 407 (526)
.|.++......++..-.+.+++.+..... ..+...|+.++.+.++..- --.+..+|.-+.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444555555444444421100 1133345555555544333 22344444555444455555555555
Q ss_pred HHH
Q 043068 408 ICG 410 (526)
Q Consensus 408 l~~ 410 (526)
+.+
T Consensus 122 i~~ 124 (145)
T PF13762_consen 122 IKA 124 (145)
T ss_pred HHH
Confidence 555
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.65 E-value=1.5e+02 Score=30.24 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred CChhHHHHHHHHhcCCCCCCCC---C---cCChhhHHHHHHHHHhCCCHHHHHHHHHhcC------------------C-
Q 043068 66 TNPYHALFFFNWASNPNPNPNK---Y---HHTTPCYTAITDVLLSHSLISIAASLLKNSN------------------K- 120 (526)
Q Consensus 66 ~~~~~Al~~f~~~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------~- 120 (526)
+.+++|..-|.-+....+.... . +.-..+...+++++..+|+.+.+..+++++. +
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4467788777766654321110 0 1113356778888999999999988887632 0
Q ss_pred ----C-CHHHHH---HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCC-
Q 043068 121 ----L-SDFFIS---KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLV-RVNSIKLAEEFFHQIVKENVV- 190 (526)
Q Consensus 121 ----~-~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~- 190 (526)
+ +-..|- .-+..+.+.|.+..|.++-+-+...++..|+...-.+|+.|+ +..+++-.+++++.....+.+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1 112333 234567788999999999988888887667778788888775 567888888888877544322
Q ss_pred -CCCHHHHHHHHHHHHHcCC
Q 043068 191 -PPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 191 -~~~~~~~~~li~~~~~~g~ 209 (526)
-||...-.+|+..|.+...
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred hcCCchHHHHHHHHHHhcCC
Confidence 3454444455566665544
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.59 E-value=60 Score=26.47 Aligned_cols=78 Identities=4% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068 197 YTTMIRGYCKMGMIENAKKVFDVMT-V-------KPNLLAYNTMINGFCKKGE-LEEAKKCMNEMMNRGCRPNELTYNAM 267 (526)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~-~-------~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (526)
.+.++.-....++.....++++.+. + ..+...|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4445554455555555555555540 0 1233345556655544444 33445555555555556666666666
Q ss_pred HHHHHHc
Q 043068 268 IYGLCIN 274 (526)
Q Consensus 268 i~~~~~~ 274 (526)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6555443
No 375
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.59 E-value=1.1e+02 Score=28.35 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=24.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHcC
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRV----NSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~ 188 (526)
..+++..+...+......+. ......+...|... .+..+|.++|....+.|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g 107 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG 107 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc
Confidence 45666777777766654321 22333333333322 23455555555444444
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.57 E-value=53 Score=24.71 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG 361 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 361 (526)
.+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555444333 3445555444422 24444444444444444443
No 377
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=66.48 E-value=90 Score=29.12 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=50.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 043068 337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG 416 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g 416 (526)
++..+.+.++..+..+.+..+.. ...-...+..+...|++..|++++.+..+. --+...|+++=. + ..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~~l~~~~c~~~-L---~~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LEELKGYSCVRH-L---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHhcccchHHHH-H---hH
Confidence 34444444444444444444432 222334455556667777666666655441 001111111111 1 12
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhCCCHHHHH
Q 043068 417 RMQDVEDLVDRMIRSG-----HNLDFTMYSCLLKGYCEEGNVENVM 457 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~ 457 (526)
++++-....+++++.. ...|+..|..+..||.-.|+...+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 2333333333332221 1346677777777777777655544
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.97 E-value=23 Score=25.21 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=21.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKPT--VFSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~ 388 (526)
..++.++|+..|+...+.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544322211 12444555555555555554443
No 379
>PRK10941 hypothetical protein; Provisional
Probab=65.30 E-value=93 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHH
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD 218 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (526)
.+-.+|.+.++++.|+++.+.++.-. |.+..-+.--.-.|.+.|.+..|..=++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~ 239 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLS 239 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44445555566666666666655554 5555555555555556666555554333
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.90 E-value=1e+02 Score=27.43 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCR 258 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~ 258 (526)
-...+++.+|+++|++.......
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456777777777776655433
No 381
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.58 E-value=1e+02 Score=27.40 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN 212 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 212 (526)
+...+++++|++.+-.- .. ...--..++.++...|+.+.|..+++...-. ..+......++.. ...+.+.+
T Consensus 88 ~LD~~~~~~A~~~L~~p---s~--~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~E 158 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP---SL--IPWFPDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTE 158 (226)
T ss_pred HhChHhHHHHHHHhCCC---CC--CcccHHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHH
Confidence 44556677777666321 11 1111224666666677777777777664321 2233333333333 55577777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 043068 213 AKKVFDVMTVKPNLLAYNTMINGFC 237 (526)
Q Consensus 213 A~~~~~~~~~~p~~~~~~~li~~~~ 237 (526)
|..+-+.....-....+..++..+.
T Consensus 159 Af~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 159 AFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHhCchhhhHHHHHHHHHHHH
Confidence 7776666532111334555555444
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.01 E-value=2e+02 Score=30.44 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH
Q 043068 345 GKSDEAISLLKEMRARG-LKPT--VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV 421 (526)
Q Consensus 345 g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a 421 (526)
.+.+.|..++....... ..+. ...+..+....+..+..+++...++.........+...+. +....+. ++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r--~r~Al~~-~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERR--VRMALGT-GDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHH--HHHHHHc-cCHHHH
Confidence 45567777777654332 2211 1233344333344332456666666554322122222222 2222233 777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
...+..|....-. ...-.-=+.+++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776443211 23333335566666777777777777763
No 383
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.90 E-value=1.2e+02 Score=27.94 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHHcCCHHHHH
Q 043068 241 ELEEAKKCMNEMMN-RGCRPNELTYNAMIYGLCING--RVDEAKMLMAKMRLN-GFKDNVSTHKSMLKGLCVVGKFDQAV 316 (526)
Q Consensus 241 ~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (526)
.+.+|+++|+..-. ..+--|..+...+++...... ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666652211 123335556666666555411 112222222222221 23556666666777777777777777
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 317 GYLRNVMEA-NMNPDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
++++..... ++.-|...|..+|..-...|+..-..++..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 766665554 4455666677777777777776665555543
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.78 E-value=1.4e+02 Score=29.04 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=31.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHHC
Q 043068 303 LKGLCVVGKFDQAVGYLRNVMEANMNPDVK--SYEVVINGFCK--IGKSDEAISLLKEMRAR 360 (526)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 360 (526)
+..+...+++..|.++++.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445667777777777777765 333333 33344444432 33566777777666543
No 385
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=63.65 E-value=1.3e+02 Score=28.30 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCK------IGKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDR 384 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 384 (526)
++++..++++....+. |........|.++-. .-+|.....+|+-+... .|+++ +.|-- .+..+....+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHH-HHHHHhhhHHh
Confidence 3445555555544443 344444443333211 12344444555544443 23322 22222 22333334455
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
++.+.+-+...+--.+...|..+=..++...|+.++|...|++.+..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 55555555443222334445555445555556666666666665543
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.39 E-value=26 Score=30.26 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+..++..+ ..|++.+|..++.++...|+.++|.+..+++....+
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444443 568888999999999999999999999988888877
No 387
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.55 E-value=1.9e+02 Score=29.58 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=23.9
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 348 DEAISLLKEM-RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 348 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
++..+.+... .+.|+..+......++... .|++..+...++.+..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 3444444443 3446655555554444332 4677777776666543
No 388
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.36 E-value=65 Score=24.27 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
..++|..+-+-+...+ .....+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|-.+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 4566666666555443 1122222233345566777777777777764 677777755543 4566666666666666
Q ss_pred HHcCCCCCHHHH
Q 043068 253 MNRGCRPNELTY 264 (526)
Q Consensus 253 ~~~g~~p~~~~~ 264 (526)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 6665 3344443
No 389
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.92 E-value=69 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHH
Q 043068 141 AAIFWFHQAKQIENGAC-LYSYNSLLGVLVRVNSIKLAEEFFH 182 (526)
Q Consensus 141 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 182 (526)
.+.++|..|...++... ...|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433222 2334444444444444444444443
No 390
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.62 E-value=1.4e+02 Score=27.72 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---------------CHHHHHHHHHHHHHcCC
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEG---------------NVENVMQIAHEMVTKKG 468 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~ 468 (526)
+.++|..+|.+.-+.|. ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 56677777777766654 22222222 344333 66666777766666665
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.61 E-value=55 Score=33.18 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=55.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
.|+...|...+........ ....+....|.....+.|-...|..++.+. . ......++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p-~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAP-LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccCh-hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4677777766666554331 112233445566666666666666666543 1 122344566666777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 249 MNEMMNRGCRPNELTYNAMIYGLC 272 (526)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~ 272 (526)
|++..+.... +...-+.|...-|
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHH
Confidence 7777665322 3444444444333
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.71 E-value=40 Score=21.31 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068 405 NTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445 (526)
Q Consensus 405 ~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 445 (526)
..++.+ +..|-..++..++++|.+.|+..+...+..++.
T Consensus 7 GiL~~A--k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 7 GILLLA--KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHH--HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344444 334788888888888888888877777776654
No 393
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.94 E-value=1.4e+02 Score=27.43 Aligned_cols=95 Identities=13% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--
Q 043068 192 PDVSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPNLLAYNT-MINGFCKKGELEEAKKCMNEMMNRGCRPNE-- 261 (526)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 261 (526)
....++..+..-|++.++.+.+.++..+. +.+-|+....+ |.-.|....-+++-++..+.|.++|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34667888889999999999998887764 45555543333 223344445567788888888888765432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 262 --LTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 262 --~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
.+|.-+- +....++.+|-.++....
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2333322 223356777777666554
No 394
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.80 E-value=1e+02 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHcccCCCCcCHHHHHHHH
Q 043068 378 ENGELDRAILLLKQMPQMDCLPNFVSYNTII 408 (526)
Q Consensus 378 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 408 (526)
+.|++.+|.+.+-.+.+.+..|...-...+.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 4466777777766666655556554433333
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.27 E-value=1.4e+02 Score=27.22 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 192 PDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGL 271 (526)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (526)
.+......+...|.+.|++.+|+..|-.-+ .++...+..++......|...++ |... ...+-.|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHHHH
Confidence 366777778888888888888877765432 22333332233222222222222 1111 2223345
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 043068 272 CINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~ 289 (526)
.-.++...|...++...+
T Consensus 152 L~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHTTBHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 566777777777666543
No 396
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.29 E-value=89 Score=27.57 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 419 QDVEDLVDRMIRSGHNL----D-FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
..|.+.|.+..+..-.| + ..+.-.++..+.+.|+.++|.+.|.+++..+....
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34555555555443221 2 23444455667788999999999999888776433
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.21 E-value=92 Score=26.52 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 043068 446 GYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~ 465 (526)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555554
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.15 E-value=32 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHH
Q 043068 416 GRMQDVEDLVDRMIRSGHNLD--FTMYSCLLKGYCEEGNVENVMQIA 460 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 460 (526)
.+.++|+..|...++.-..+. ..++..|+.+|+..|++.++++..
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888887777543322 246677777888888887776654
No 399
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.02 E-value=1.6e+02 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHcCCHHH
Q 043068 298 THKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~ 314 (526)
+|.-++.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 44455556666655544
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.98 E-value=36 Score=22.97 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=4.4
Q ss_pred HHHHcCCHHHHHH
Q 043068 305 GLCVVGKFDQAVG 317 (526)
Q Consensus 305 ~~~~~g~~~~A~~ 317 (526)
+|...|++++|.+
T Consensus 32 gllqlg~~~~a~e 44 (62)
T PF14689_consen 32 GLLQLGKYEEAKE 44 (62)
T ss_dssp HHHHTT-HHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 3333333333333
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.96 E-value=1.3e+02 Score=26.46 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHcccCCC----CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068 370 NAVFRILVENGE-------LDRAILLLKQMPQMDC----LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN 434 (526)
Q Consensus 370 ~~li~~~~~~g~-------~~~a~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~ 434 (526)
..+...|-..|+ ...|.+.|.+..+..- .-+..+..-|++-+.+..|+.++|.+.|.+++..+-.
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 334444555555 3445555555543221 2244556667777777789999999999998876544
No 402
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.83 E-value=1.7e+02 Score=27.53 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=12.3
Q ss_pred HcCCHHHHHHHHHHccc
Q 043068 378 ENGELDRAILLLKQMPQ 394 (526)
Q Consensus 378 ~~g~~~~a~~~~~~~~~ 394 (526)
...-+.+|.++|++..+
T Consensus 228 Ea~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALK 244 (556)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 44557788888888765
No 403
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.64 E-value=1.9e+02 Score=28.12 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRP---NELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
.+.-+.+-|...|+++.|++.|.+..+- +.- ....|..+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566677777777777777777775432 111 223344555555666777777766666654
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.42 E-value=58 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=14.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 043068 164 LLGVLVRVNSIKLAEEFFHQIVK 186 (526)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~~~~ 186 (526)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445556777777766666654
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.39 E-value=1.9e+02 Score=28.09 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCccchhhhHHHHHHHHHHHHHHh
Q 043068 436 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK----GRLLKLKNFLTRVVDALLLMWIVT 491 (526)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 491 (526)
.+..+..+..-| .+++...+++++++..+- .-.|...+.|+.+.+..+..+..+
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~p 362 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSP 362 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCc
Confidence 444555554444 466777777777665432 224667777777777776665444
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.72 E-value=2.7e+02 Score=29.54 Aligned_cols=369 Identities=9% Similarity=0.029 Sum_probs=193.0
Q ss_pred hcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHcCCCHHH
Q 043068 64 EQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKL--SDFFISKLIKAYGDRGNVKA 141 (526)
Q Consensus 64 ~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 141 (526)
+.|++..+.++...+.. .| - .....|..+..- .....+++...++++.+.. ....-..-+..+.+.+++.+
T Consensus 45 ~~g~~~~~~~~~~~l~d-~p---L--~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKD-YP---L--YPYLEYRQLTQD-LMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HCCCHHHHHHHHHhccC-CC---c--HhHHHHHHHHhc-cccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 36788877777665431 11 0 111123332221 1234678888888876632 22233445556667888887
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-
Q 043068 142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM- 220 (526)
Q Consensus 142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 220 (526)
.+..+. ..+.+...-.....+....|+.++|......+-..| ......++.++..+.+.|.+.... ++.+|
T Consensus 118 ~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~ 189 (644)
T PRK11619 118 LLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQDPLA-YLERIR 189 (644)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCCCHHH-HHHHHH
Confidence 777331 122455566677788888999888888888887777 445668888888888777655433 22222
Q ss_pred --CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 043068 221 --TVKPNLLAYNTMINGFCK------------KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC--INGRVDEAKMLM 284 (526)
Q Consensus 221 --~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~ 284 (526)
-...+...-..+...+.. ..+...+...+. .+.|+...-..++-++. ...+.+.|..++
T Consensus 190 ~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~ 264 (644)
T PRK11619 190 LAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMI 264 (644)
T ss_pred HHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence 001122221222221100 011111111111 11223221121222222 345668888888
Q ss_pred HHHHHcC-CCCCH--HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043068 285 AKMRLNG-FKDNV--STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG 361 (526)
Q Consensus 285 ~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 361 (526)
....... ..+.. .+...++......+...+|...++....... +......-+..-...++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 8774433 22221 2334444444444335667777666544322 34444445555558899999988888885432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHCCCCCCHHHH
Q 043068 362 LKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDV-EDLVDRMIRSGHNLDFTMY 440 (526)
Q Consensus 362 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a-~~~~~~~~~~~~~p~~~~~ 440 (526)
.-...-.--+.+++...|+.++|...|+.+... .+|..++.+ -+. |..-.. ...... ....+.-++ -
T Consensus 343 -~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~L-g~~~~~~~~~~~~-~~~~~~~~~--~ 410 (644)
T PRK11619 343 -KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRL-GEEYPLKIDKAPK-PDSALTQGP--E 410 (644)
T ss_pred -ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHc-CCCCCCCCCCCCc-hhhhhccCh--H
Confidence 223333445677777789999999999997541 235555533 122 322000 000000 000001011 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
..-+..+...|+..+|...+..+...
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22344567789999999999888875
No 407
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.37 E-value=35 Score=23.00 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
++...++++.+... .-|-.-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555432 11333344567788888888888887777653
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.30 E-value=1.6e+02 Score=26.81 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 275 GRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
..+++|+.-|++..+..-.... .....++..+.+.+++++....|.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3566666666666543212222 233345555666666666666665554
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.78 E-value=2e+02 Score=27.82 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=23.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHc
Q 043068 339 NGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILV-ENGELDRAILLLKQM 392 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~ 392 (526)
..+.+.|.+..|.++.+-+...+..-|+......|+.|+ +.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344455555555555555544432223333333333332 444444444444443
No 410
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.64 E-value=1.8e+02 Score=27.13 Aligned_cols=69 Identities=14% Similarity=0.370 Sum_probs=36.5
Q ss_pred HcCCHHHHHHHHH-HHHHcCCCCCHH----hHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 273 INGRVDEAKMLMA-KMRLNGFKDNVS----THKSMLKGLCVVGKFDQAVGYL-RNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 273 ~~g~~~~a~~~~~-~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
+...+++...... +|.+.+ -|+.. +|..++++-- |.+-.++. ++.++ ...+|.-|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsave----WnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 3344555544444 455555 45543 4555555443 32222211 22222 34568889999999998
Q ss_pred hhHHH
Q 043068 347 SDEAI 351 (526)
Q Consensus 347 ~~~A~ 351 (526)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 87554
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.35 E-value=94 Score=23.87 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 334 YEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888887765
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.05 E-value=2.1e+02 Score=27.89 Aligned_cols=57 Identities=18% Similarity=0.032 Sum_probs=34.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHh--cCChhHHHHHHHHHHHc
Q 043068 130 IKAYGDRGNVKAAIFWFHQAKQIENGACLY--SYNSLLGVLVR--VNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 187 (526)
+..+.+.++|..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445778888888888887765 333332 34444444433 45677777777776654
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.02 E-value=30 Score=34.01 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=38.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK 214 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (526)
..+.++.|+.++.++.+.++ -++..|..-..++.+.+++..|+.=+...++.. |.-...|.--..++.+.+.+.+|+
T Consensus 16 ~~~~fd~avdlysKaI~ldp-nca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDP-NCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHhcCC-cceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence 34455555555555544431 122223222344455555555555444444443 222333333333344444444444
Q ss_pred HHHHhC-CCCCCHH
Q 043068 215 KVFDVM-TVKPNLL 227 (526)
Q Consensus 215 ~~~~~~-~~~p~~~ 227 (526)
..|+.. .+.|+-.
T Consensus 93 ~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHhhhcCcCcH
Confidence 444443 3334433
No 414
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.67 E-value=29 Score=22.54 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
.-++.+.|++++|.+..+.+.+ +.|+.....
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 3344555555555555555554 334444333
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.65 E-value=82 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHH
Q 043068 274 NGRVDEAKMLMAKMR 288 (526)
Q Consensus 274 ~g~~~~a~~~~~~~~ 288 (526)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344555555555444
No 416
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.59 E-value=1.6e+02 Score=26.27 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 95 YTAITDVL--LSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 95 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
|...++++ ..++++++|.+.+-... ..+..-..++.++...|+.+.|+.++..+.... .+......++.. ..++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps-~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPS-LIPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCC-CCcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcC
Confidence 55556655 45788999999885432 223334457777788999999999988654211 223333444444 6678
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
.+.+|...-+...+.. ....+..++..+....
T Consensus 155 ~v~EAf~~~R~~~~~~----~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDEL----RRRLFEQLLEHCLEEC 186 (226)
T ss_pred CHHHHHHHHHhCchhh----hHHHHHHHHHHHHHHh
Confidence 9999988777664432 1346667777666544
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.44 E-value=1.4e+02 Score=28.09 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCH
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEA---NMNPDVKSY--EVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTV 366 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~ 366 (526)
++...-+.++.++|+++++++.+. .-.|+.+.| ..+...+...|+..++.+++.+..+ .|++|++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 344444556777777777777653 223455444 3344556667777777777777665 4555544
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.86 E-value=89 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 143 IFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
.+-++.+...++-|+...-...++++.+.+++..|.++|+-++.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344444445555566666666666666666666666666666543
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.81 E-value=13 Score=29.58 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
|.-.+|..+|++|++.|-+|| .|+.|+...
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 666678888888888887776 466666543
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.07 E-value=59 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=17.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMI 268 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (526)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555566666666555555555555444
No 421
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.20 E-value=2.6e+02 Score=27.70 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCCCHHh
Q 043068 241 ELEEAKKCMNEMMNR---GC-RPNELTYNAMIYGLCINGRVDEAKMLMAKM------------------RLNGFKDNVST 298 (526)
Q Consensus 241 ~~~~A~~~~~~m~~~---g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~------------------~~~~~~~~~~~ 298 (526)
..++...+++..... |+ ..+......++..+ .|+...++.+++.+ .......+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHCCCCCCHHHHH
Q 043068 299 HKSMLKGLCVV---GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD-----EAISLLKEMRARGLKPTVFSFN 370 (526)
Q Consensus 299 ~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~~~~p~~~~~~ 370 (526)
+..+++++.+. ++.+.|+.++..|.+.|..|....-..++.++...|.-+ -|...++.....|.+--.....
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~ 309 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHccc
Q 043068 371 AVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
..+-.++..-.-..+...+..+.+
T Consensus 310 ~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 310 QAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHH
No 422
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.46 E-value=1.6e+02 Score=31.01 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCC
Q 043068 120 KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC-------LYSYNSLLGVLVRVNSIKLAEEFFHQIVK-ENVVP 191 (526)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~ 191 (526)
.+++.+...++-.|....+++..+++.+.++...-.-+ .+.|.-.+.---+-|+-++|+...-.+++ .|.+.
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 45566778888899999999999999998876421001 12233333333345778888887766664 55566
Q ss_pred CCHHHHH-----H--HHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HHHHHHHH------HHHH-Hc
Q 043068 192 PDVSTYT-----T--MIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGE-LEEAKKCM------NEMM-NR 255 (526)
Q Consensus 192 ~~~~~~~-----~--li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~-~~~A~~~~------~~m~-~~ 255 (526)
||.+... - +-+.|...+..+.|.++|++. .+.|+..+--.+...+...|+ ++..+++= ..++ ++
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 7754322 1 123344556778889999887 666765543222222222222 22222211 1111 11
Q ss_pred CCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 256 GCRPNELTY---NAMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 256 g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
|..-....| ...+.+-.-++++.+|...-+.|.+..
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 211111111 222344455678888888888887654
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.42 E-value=34 Score=31.55 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=31.4
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043068 222 VKPNLLA-YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN 265 (526)
Q Consensus 222 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (526)
+.||..+ |+..|....+.||+++|+++++|..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3455554 5678888888888888888888888888764444443
No 424
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.42 E-value=4e+02 Score=29.74 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=16.0
Q ss_pred HHHHHHHHcCChhhHHHHHHhC
Q 043068 199 TMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~ 220 (526)
..++-+...+++.+|+.+.++-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHh
Confidence 3455666788888888888775
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.58 E-value=2.3e+02 Score=26.65 Aligned_cols=83 Identities=10% Similarity=0.083 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043068 174 IKLAEEFFHQIVKENVV---PPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 174 ~~~A~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (526)
.+.|.+.|++....+.- ..+......+.....+.|+.+.-..+++.....++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 46677777777764211 234445555555566666655555555554434566666777777777777777777777
Q ss_pred HHHHcC
Q 043068 251 EMMNRG 256 (526)
Q Consensus 251 ~m~~~g 256 (526)
.....+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 776643
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.39 E-value=20 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGL 271 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (526)
.-+.|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999999884 66666543
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.24 E-value=2.3e+02 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068 336 VVINGFCKIGKSDEAISLLKEMRARGLKPTV---FSFNAVFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
.+..+-.+.|+..+|.+.++++.+. .|-. ..-..|+.++....-+.++..++-+.-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444555778888888888877654 2211 12345667777666666666666555543
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.81 E-value=1.2e+02 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQ 151 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~ 151 (526)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666777777777777666554
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.57 E-value=2.4e+02 Score=26.69 Aligned_cols=80 Identities=6% Similarity=-0.024 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE---NGELDRAILL 388 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~ 388 (526)
.+.-+.++++.++.++ -+......++..+.+..+.++..+.++++...... +...|...+..... .-.++...++
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4556777888777755 37777888888888888888888888888876321 45566666655443 2345555555
Q ss_pred HHHcc
Q 043068 389 LKQMP 393 (526)
Q Consensus 389 ~~~~~ 393 (526)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 55443
No 430
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=47.89 E-value=15 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=17.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDV 194 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~ 194 (526)
-+++.|...|.++...|.+|++.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 37778888888887777677664
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.83 E-value=1.4e+02 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA 414 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 414 (526)
+..|.+.|.+++|.+++++..+ .|+......-+..+.+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 4457777888888888877765 24444444444444443
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.55 E-value=63 Score=27.87 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 192 PDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
|+..+|..++.++...|+.++|.++.++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333334444444444333333
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.42 E-value=46 Score=18.02 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
|+.+.|..+|++++... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHH
Confidence 34556666666666553 44455554444
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.62 E-value=2.8e+02 Score=26.83 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=32.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 043068 233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC-INGRVDEAKMLMAKMR 288 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~ 288 (526)
|..+.+.|.+..|+++.+-+......-|+.....+|+.|+ +.++++--+++++...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4556666777777777776666644445555555555553 4555555555555543
No 435
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.35 E-value=4.8e+02 Score=29.45 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHH
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEMRARGLK---PT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI 407 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 407 (526)
.-|...++.+.+.+-.+.+.++-...++. +. |+ ..+++.+.+-....|.+-+|...+-.-... .........+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 34677888899999999999988887765 22 22 346777778888889998888776554331 1223445556
Q ss_pred HHHHHhcCCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043068 408 ICGLCMAKGRMQ------------DVED-LVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAH 461 (526)
Q Consensus 408 l~~~~~~~g~~~------------~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (526)
+-.++.. |.++ +.+. +++..-...+.-....|..|-.-+...+++.+|-.+.-
T Consensus 1061 vivLfec-g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1061 VIVLFEC-GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHhc-cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 6566654 5543 3444 33333332222233456666556678889988776643
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.28 E-value=2.2e+02 Score=26.57 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 351 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.++++.|.+.++.|.-..|..+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666666666666666666666666666667777766654
No 437
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.05 E-value=4.1e+02 Score=28.59 Aligned_cols=86 Identities=7% Similarity=-0.031 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHH
Q 043068 382 LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFT-MYSCLLKGYCEEGNVENVMQIA 460 (526)
Q Consensus 382 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 460 (526)
++.|...|.........+................++++.+..+++.....|.. +.. .|-..++.=...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 34455555554432222222222222222233347888888888887766543 443 5555555556678888888876
Q ss_pred HHHHHcCC
Q 043068 461 HEMVTKKG 468 (526)
Q Consensus 461 ~~m~~~~~ 468 (526)
+.....-.
T Consensus 521 R~ay~~~~ 528 (881)
T KOG0128|consen 521 RKAYSQVV 528 (881)
T ss_pred HHHHhcCc
Confidence 66655443
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=2.5e+02 Score=25.98 Aligned_cols=28 Identities=11% Similarity=0.392 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 296 VSTHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
...+..+...|++.++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3455555666666666666555554443
No 439
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.69 E-value=1.2e+02 Score=22.23 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=16.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELD 383 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 383 (526)
..|+.+.|.+++..+. +| | ..|..++.++-..|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchh
Confidence 3455555555555555 31 1 23444555554444433
No 440
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.48 E-value=1.4e+02 Score=22.84 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
...++|..+.+-+...+ .....+--+-+..+.+.|++++|+..=.. ...||...|-+|- -.+.|-.+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQC-HCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34556666666555544 12222333334445556666666221111 2245555554432 2355555666655555
Q ss_pred HHHc
Q 043068 252 MMNR 255 (526)
Q Consensus 252 m~~~ 255 (526)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5444
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.46 E-value=2.3e+02 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHHHcCChhhHHHHHHhC
Q 043068 200 MIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~ 220 (526)
-|......|++++|++..+.+
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 344445555555555555554
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.44 E-value=1.4e+02 Score=22.83 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 043068 346 KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 346 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
..++|..+.+.+...+.. ...+--.-+..+.+.|++++| +..-... ..||...|..+-.. +. |-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~--~~pdL~p~~AL~a~--kl-GL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQCH--CYPDLEPWAALCAW--KL-GLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHTTS----GGGHHHHHHHHH--HC-T-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhcccC--CCccHHHHHHHHHH--hh-ccHHHHHHHH
Confidence 455666666666554321 222222233445566666666 2222111 24666666555432 33 6666666666
Q ss_pred HHHHHC
Q 043068 426 DRMIRS 431 (526)
Q Consensus 426 ~~~~~~ 431 (526)
.++-..
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 655443
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.28 E-value=1.3e+02 Score=24.53 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 209 (526)
.++..+...++.-.|.++|+++.+.+ .+-+..|-..-++.+...|-
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCC
Confidence 34444444444455555555555443 22333443344444444443
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.26 E-value=54 Score=30.35 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 043068 257 CRPNELT-YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH 299 (526)
Q Consensus 257 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 299 (526)
+.||..+ |+..|....+.|++++|+.+++++++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3455554 568899999999999999999999998865433333
No 445
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.07 E-value=2.1e+02 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 335 EVVINGFCKIGKSDEAISLLKEMRARGL--------------KPTVFSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
-+++-.|-+.-++.+..++++.|.+..+ .+.-...|.....+.+.|.+|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3566678888889999999888876422 23334567777888888999999888874
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.52 E-value=1.3e+02 Score=31.14 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRLN--GFKDNVSTHKSMLKGLCVVGKFD------QAVGYLRNVMEANMNPDVKSYEVV 337 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 337 (526)
+|+.+|...|++..+.++++..... |-+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999999888654 22333456777778888888754 2333333333 44477778777
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 043068 338 INGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~ 359 (526)
+.+-...-+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665443333333444444443
No 447
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.32 E-value=2.5e+02 Score=25.25 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDEAKMLMAKMR 288 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~ 288 (526)
.++..+-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4566777888888888888888888776666666666555532 344455566655554
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=2.9e+02 Score=26.06 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCH----
Q 043068 194 VSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPNLLAYNTMINGFC-KKGELEEAKKCMNEMMNRGCRPNE---- 261 (526)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~---- 261 (526)
...+.....-||+.||.+.|.+.+.+. |.+-|+..+..-+..+. ...-+.+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345666677788888888888777653 55566665554443332 223344455555555565544332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
.+|..+- |....++.+|-.+|-+..
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 2333332 333456666666665544
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.16 E-value=1.3e+02 Score=27.24 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=7.0
Q ss_pred HHHHcCCHHHHHHHHHH
Q 043068 270 GLCINGRVDEAKMLMAK 286 (526)
Q Consensus 270 ~~~~~g~~~~a~~~~~~ 286 (526)
.|.+.|++++|.++|+.
T Consensus 187 ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 33344444444444443
No 450
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.06 E-value=1.3e+02 Score=22.08 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
|...--.+...+...|++++|++.+-.+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444445555555555555555555555443
No 451
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.75 E-value=3.6e+02 Score=27.03 Aligned_cols=377 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHcCC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCCH-----HHHH
Q 043068 129 LIKAYGDRG--NVKAAIFWFHQAKQIENGACLYSYNSLLGV---LVRVNSIKLAEEFFHQIVKENVVPPDV-----STYT 198 (526)
Q Consensus 129 li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ 198 (526)
+...+...| +...+++.++......+..-+.+-..|=-+ +.-..+++.|..-++.....-.--|+. .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHHcC-ChhhHHHHHHhC-CCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 199 TMIRGYCKMG-MIENAKKVFDVM-TVKPNLLAYNT-----MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGL 271 (526)
Q Consensus 199 ~li~~~~~~g-~~~~A~~~~~~~-~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (526)
.|...|+... .+..|..++.+. ....+...|.. |+..+.-..++..|.+++.---+. -.+-...|..++...
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Q ss_pred HHc---------CCHHHHHHHHHHHHHcCCCCC--------HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 043068 272 CIN---------GRVDEAKMLMAKMRLNGFKDN--------VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP----- 329 (526)
Q Consensus 272 ~~~---------g~~~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----- 329 (526)
.+. .++..+.....++.+.. .+| ++-.+.-+..|...|+...+...++++.+.--..
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Q ss_pred -----------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCC-----CHHHHHHHH
Q 043068 330 -----------------------DVKSYEVVINGFCKIGKSDEAISLLKEMRAR--------GLKP-----TVFSFNAVF 373 (526)
Q Consensus 330 -----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p-----~~~~~~~li 373 (526)
..-.|..-...-...|-+++|.++-+++... +..| ...+...++
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHccc-CCCCcC-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHH
Q 043068 374 RILVENGELDRAILLLKQMPQ-MDCLPN-------FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY--SCL 443 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~-~~~~p~-------~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l 443 (526)
.+=.-.|+..+|++-...|.+ ..-.|. ......+++.||-.-|.++.|+.-|....+.--..|...+ ..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Q 043068 444 LKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVI 508 (526)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 508 (526)
...|.+.|+-+.-.++++.+-..+. .+-....+..-+--..+...-...++-|....+++.+.+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt-~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNT-NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCC-CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
No 452
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.57 E-value=2e+02 Score=31.09 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=81.8
Q ss_pred HHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043068 102 LLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFF 181 (526)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (526)
....|+++.|.+..++.. ++..|..|+......|+.+-|.-.|++.+. |+.|--.|.-.|+.++-.++-
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 445677787777766654 345778888888888888888888876553 334444566678877766665
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 182 HQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+-...++ |..+.. ....-.|++++-.++++..+..|- .|-+ ....|.-++|.++.++....
T Consensus 722 ~iae~r~----D~~~~~---qnalYl~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 722 KIAEIRN----DATGQF---QNALYLGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhhh----hhHHHH---HHHHHhccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhccc
Confidence 5544332 322211 112235888888888888764321 2211 12357778888888887664
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.55 E-value=1.4e+02 Score=22.46 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 418 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
..+.++.+++....+....+-....|.-.|.+.|+.+.|.+-|+.=....+..-
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 344455566665555444444555666678888888888888776655555433
No 454
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.16 E-value=2.6e+02 Score=27.97 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=74.1
Q ss_pred HHHHHHcCChhhHHHHHHhCCC--------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCC--
Q 043068 201 IRGYCKMGMIENAKKVFDVMTV--------KPN---LLAYNTMINGFCKKGELEEAKKCMNEMMN-------RGCRPN-- 260 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~--------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~-- 260 (526)
-..+...|++.+|.+++...++ .|. -..||.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3445667999999999877621 221 22357777777778888888887777664 465543
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068 261 ---------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308 (526)
Q Consensus 261 ---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (526)
..+||.=+ .|...|++-.|.+.|.+.... +..++..|-.+..+|.-
T Consensus 327 ~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23344333 577889999999999988764 36778899999998864
No 455
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.63 E-value=5.1e+02 Score=28.15 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=91.3
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068 54 GSNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAY 133 (526)
Q Consensus 54 ~~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 133 (526)
.+.-+-+++...|+++.|++.-+-. | ..--.++..-++.+...+.|..|.+++.+. ...|..+.--+
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~----p-----~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKF 426 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTR----P-----DALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKF 426 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCC----H-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHH
Confidence 4466778888899999999876521 1 112234667788888899999998888776 33455555555
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHH-hcCChh----HHHHHHHHHHHc--------CCCCCCHH
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYN-----SLLGVLV-RVNSIK----LAEEFFHQIVKE--------NVVPPDVS 195 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~li~~~~-~~g~~~----~A~~~~~~~~~~--------~~~~~~~~ 195 (526)
....+.+ ++..|-.-+-....|...+-. -++..|. +.++.+ ++.+-++.-.+. ....-+..
T Consensus 427 l~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~ 505 (911)
T KOG2034|consen 427 LEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDEL 505 (911)
T ss_pred HhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 5565655 444443322222223222211 1222222 222222 222222111100 00011112
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
.+.+....+...|+.+.+..+-.-| ..|..++.-+++.+.+++|++++..
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~------~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLI------KDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333344445555554443332 2356677777888888888887754
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.28 E-value=2.8e+02 Score=24.91 Aligned_cols=102 Identities=13% Similarity=0.268 Sum_probs=58.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc-CC-----------CCcCHHHHHHHH
Q 043068 341 FCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ-MD-----------CLPNFVSYNTII 408 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~-----------~~p~~~~~~~ll 408 (526)
|.+..+..---++.+-....+++-+.....+++ +...|+..+|+..++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334333333333333333444443433333333 3346666666666654332 11 137777778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 409 CGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 409 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
.. |.. +++++|.+++.++.+.|+.|. .+.+.+.+.+
T Consensus 247 ~~-~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 247 QA-CLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HH-HHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 76 444 799999999999999999864 3444555544
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.12 E-value=4.7e+02 Score=27.54 Aligned_cols=411 Identities=12% Similarity=0.127 Sum_probs=208.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHH-hCCCHHHHHHHHHhcCC------CCHH---HHHHHHHHHHcCCC
Q 043068 69 YHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLL-SHSLISIAASLLKNSNK------LSDF---FISKLIKAYGDRGN 138 (526)
Q Consensus 69 ~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~------~~~~---~~~~li~~~~~~g~ 138 (526)
..|++-++.+.+.. .+ .......++..++.+|. ...+++.|+..++++.. ..+. ....++..|.+.+.
T Consensus 38 ~~ai~CL~~~~~~~-~l-~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQF-KL-SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhccC-CC-CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 34666666666421 11 12234456788888888 57899999999997632 1111 22356666766665
Q ss_pred HHHHHHHHHHHHhcCCC----CChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHH--cCC
Q 043068 139 VKAAIFWFHQAKQIENG----ACLYSYNSL-LGVLVRVNSIKLAEEFFHQIVKENV--VPPDVSTYTTMIRGYCK--MGM 209 (526)
Q Consensus 139 ~~~A~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~--~g~ 209 (526)
.. |....++..+.--. +-...|..+ +..+...+++..|.+.++.+..... ..+-..++..++.+... .+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 98888886543211 112333333 3333344799999999988875431 13445555555555443 455
Q ss_pred hhhHHHHHHhC-----C-------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc---C-CC-------------
Q 043068 210 IENAKKVFDVM-----T-------VKPNLLAYNTMINGFC--KKGELEEAKKCMNEMMNR---G-CR------------- 258 (526)
Q Consensus 210 ~~~A~~~~~~~-----~-------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~---g-~~------------- 258 (526)
.+++.+..+++ + ..|....|..+++.++ ..|+++.+...++++.+. . -.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 56666666554 1 1345667777776554 567777777666554321 1 00
Q ss_pred -------------CCHHHH---------HHHHH--HHHHcCCHHHHHHHHHHHHHc--------CCCCC--------HHh
Q 043068 259 -------------PNELTY---------NAMIY--GLCINGRVDEAKMLMAKMRLN--------GFKDN--------VST 298 (526)
Q Consensus 259 -------------p~~~~~---------~~li~--~~~~~g~~~~a~~~~~~~~~~--------~~~~~--------~~~ 298 (526)
+....| .-++. ..+..+..++|.+++++..+. ...+. ...
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 111111 11111 223345444665555544221 11111 112
Q ss_pred HHHHHHH---------HHHcCCHHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCChhHHHHHHH------
Q 043068 299 HKSMLKG---------LCVVGKFDQAVGYLRNVMEANM-NPD-------VKSYEVVINGFCKIGKSDEAISLLK------ 355 (526)
Q Consensus 299 ~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~------ 355 (526)
|...+.. .+-.+++..|...++.+.+... .|+ ...+....-.+...|+.+.|...|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 2222222 2446889999999998876421 111 2223333334556799999999998
Q ss_pred --HHHHCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHcccC-CCCc--CHHHHHHH-HHHHHhc-CCCHHHHH
Q 043068 356 --EMRARGLKPTVFSFNAV--FRILVENG--ELDR--AILLLKQMPQM-DCLP--NFVSYNTI-ICGLCMA-KGRMQDVE 422 (526)
Q Consensus 356 --~m~~~~~~p~~~~~~~l--i~~~~~~g--~~~~--a~~~~~~~~~~-~~~p--~~~~~~~l-l~~~~~~-~g~~~~a~ 422 (526)
.....+...+..++..+ +..+...+ ..++ +.++++.+... .-.| +..++..+ +.++... .-...++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 44444444444444332 22222222 2223 77777776642 1122 33344444 3333111 11223444
Q ss_pred HHHHHHHH-----CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHH
Q 043068 423 DLVDRMIR-----SGHN-LDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDA 483 (526)
Q Consensus 423 ~~~~~~~~-----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 483 (526)
..+.+.++ .+.. .-..+++.+...+. .|+..+..+........-...++..+.++..+..
T Consensus 515 ~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~ 580 (608)
T PF10345_consen 515 RHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVAS 580 (608)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 44433322 1111 11223333333334 7888887776666555444445555665544443
No 458
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=40.00 E-value=3.1e+02 Score=25.47 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 415 KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
.|.+.+|.++.++.+..+ +.+...|..|+..+...||--.|.+-++++
T Consensus 292 ~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 292 AGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 466666666666666543 235556666666666666655555555544
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.83 E-value=1.7e+02 Score=28.66 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVMTVKP----------NLLAYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
+...|++.++-.||+..|+++++.+.+.. .+.+|.-+.-+|.-.+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888877763211 22344555556666666666666666543
No 460
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.38 E-value=30 Score=32.43 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=48.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLL-AYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 248 (526)
.|.++.|++.|...++.+ |+....|..-.+++.+.++...|++=.... .+.||.. .|-.--.+..-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 455666666666666555 555555666666666666666666555443 3334332 222222333335666677666
Q ss_pred HHHHHHcCCCCCH
Q 043068 249 MNEMMNRGCRPNE 261 (526)
Q Consensus 249 ~~~m~~~g~~p~~ 261 (526)
|....+.++.+..
T Consensus 205 l~~a~kld~dE~~ 217 (377)
T KOG1308|consen 205 LALACKLDYDEAN 217 (377)
T ss_pred HHHHHhccccHHH
Confidence 6666666554433
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.17 E-value=4.2e+02 Score=26.73 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHH-HHHcCCCHHHHHHH
Q 043068 70 HALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIK-AYGDRGNVKAAIFW 145 (526)
Q Consensus 70 ~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~-~~~~~g~~~~A~~~ 145 (526)
.-..+|+.+.. .|.++...|...+..+.+.+.+.+...++..+. +.++..|-.-.. -|-..-+++.|..+
T Consensus 89 rIv~lyr~at~------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 89 RIVFLYRRATN------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 34456666654 355677778888887777777888888777654 333444433333 34444558888888
Q ss_pred HHHHHhcCC
Q 043068 146 FHQAKQIEN 154 (526)
Q Consensus 146 ~~~~~~~~~ 154 (526)
|.+..+.++
T Consensus 163 flrgLR~np 171 (568)
T KOG2396|consen 163 FLRGLRFNP 171 (568)
T ss_pred HHHHhhcCC
Confidence 888877763
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.08 E-value=4.6e+02 Score=27.97 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC
Q 043068 447 YCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
-.-+.++.+|.+..+.|.+.++
T Consensus 376 sVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 376 SVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hhhccCHHHHHHHHHHHhccCC
Confidence 3456889999999999988885
No 463
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.06 E-value=1.7e+02 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcc
Q 043068 371 AVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
.++..|...|+.++|...++++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 44555666677777777776653
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.01 E-value=1.5e+02 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
.++.-.|.++++.+.+.++..+..|--..+..+.+.|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555444333333333334444444
No 465
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.66 E-value=3.9e+02 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=8.1
Q ss_pred hCCCHHHHHHHHHhcC
Q 043068 104 SHSLISIAASLLKNSN 119 (526)
Q Consensus 104 ~~~~~~~a~~~~~~~~ 119 (526)
+.|..+.+..+++.+.
T Consensus 11 ~~g~~~iv~~Ll~~g~ 26 (413)
T PHA02875 11 LFGELDIARRLLDIGI 26 (413)
T ss_pred HhCCHHHHHHHHHCCC
Confidence 3455555555555443
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.48 E-value=2.2e+02 Score=23.25 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 043068 320 RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG 380 (526)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 380 (526)
..+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455554332 34555666666666777777777766654444444333444444444
No 467
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.23 E-value=73 Score=21.81 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
+...++.++..+++-.-.++++..+.++.+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444555555444444
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.93 E-value=1.5e+02 Score=26.89 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 195 STYTTMIRGYCKMGMIENAKKVFDVMT--------VKPNLLAYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
...-.+..-|.+.|++++|.++|+.+. ..+...+...+..++.+.|+.+..+.+--+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344456666777777777777777661 12233445556666777777777666655443
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.40 E-value=4.1e+02 Score=26.12 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------
Q 043068 96 TAITDVLLSHSLISIAASLLKNSNKLSD----------------FFISKLIKAYGDRGNVKAAIFWFHQAKQIE------ 153 (526)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------ 153 (526)
..++..++...++.+..+..+++..++. .+.-.|++.++-.|++..|+++++.+.-..
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 3345555666666666655555432221 123356667777788888877776542110
Q ss_pred -CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 154 -NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185 (526)
Q Consensus 154 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 185 (526)
+.-.+.+|-.+.-+|.-.+++.+|.+.|..++
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123445555556666677777777666654
No 470
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.39 E-value=1.7e+02 Score=30.35 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCChh------hHHHHHHhCCCCCCHHHHHHHHHH
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKENV-VPPDVSTYTTMIRGYCKMGMIE------NAKKVFDVMTVKPNLLAYNTMING 235 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~li~~ 235 (526)
+|+.+|...|++..+.++++....... -..-...+|..++-..+.|.++ .|.+.++...+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 788999999999999999988876431 1222456778888888888753 566677766666777888887776
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~ 254 (526)
-..--+-.-..-++.+++.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 5553333333344444443
No 471
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.71 E-value=91 Score=30.85 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 233 INGFCKKGELEEAKKCMNEMMNRGCRPNELT-YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
++.+.+.++++.|..++.+.++. .|+... |..-..++.+.+++..|+.=+..+.+.. +.....|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 44555667777777777777765 444333 3333356677777777776666666543 2222333333444444555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
+.+|+..|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 55665555555443 45555444444443
No 472
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.30 E-value=1.2e+02 Score=20.69 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
|....++.++...++..-.+.++..+.+..+.|. -+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 4455566666666666667777777777777663 355556555555554
No 473
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.64 E-value=3.8e+02 Score=25.15 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 331 VKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
..-...++.+.+...+.+...++++....
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33444445555444555544445544444
No 474
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=6.4e+02 Score=27.83 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 330 DVKSYEVVINGFCKIGKSDEAISLLKEMRA-RGLKPTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
|..++..-...+...|++..|.+++.++.+ .|-.++...|..++..+...|-- -...+++.+.
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNWM 1293 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhhe
Confidence 455555555566666777777777776654 34455555666666665555543 3334444443
No 475
>PRK09857 putative transposase; Provisional
Probab=35.34 E-value=3.1e+02 Score=25.62 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 265 NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN 328 (526)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (526)
..++....+.++.++..++++.+.+. .+.......+++.-+.+.|.-+++.++..+|...|..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444455555455555544433 1222222333444444444444444444444444433
No 476
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.93 E-value=1.9e+02 Score=21.37 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=12.8
Q ss_pred HHHHHHHcCChhhHHHHHHhC
Q 043068 200 MIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~ 220 (526)
+...+...|+.++|.+.+++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 444555566666666666654
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.49 E-value=2.3e+02 Score=22.39 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
.+.++|..|...|.-..-...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999988775566778888999999999999999998864
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.30 E-value=7.4e+02 Score=28.13 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=14.7
Q ss_pred HhcCccchhHHHHHHHHHHHHHHH
Q 043068 490 VTGGSWISRFVFVHQVVVIMERTV 513 (526)
Q Consensus 490 ~~g~~~~~~~~~~~~~~~~~~~~~ 513 (526)
.+.-+|.......+++-.+++..+
T Consensus 1309 ~p~r~~~~~ssaadeaW~lL~~lv 1332 (1480)
T KOG4521|consen 1309 TPQRGWVAASSAADEAWSLLRGLV 1332 (1480)
T ss_pred CCcccchhhccchhhHHHHHHHHH
Confidence 344566666666666666666655
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.02 E-value=3.1e+02 Score=23.69 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------------CCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRLNGF--------------KDNVSTHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
+++..|-+.-+|.++.++++.|.+..+ .+.-...|.....+.+.|..|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345566666677777777776654321 2223344555555566666666665554
No 480
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.87 E-value=1.9e+02 Score=21.24 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=16.2
Q ss_pred CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
+.|....-.+...+...|++++|++.+-.+++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444445555555555555555555555544
No 481
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.86 E-value=2.1e+02 Score=21.79 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 370 NAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAK-GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 448 (526)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 448 (526)
..++.-|...|++++|..-+.++......+ .....++....... ..-+....++..+.+.+.. +. ..+..++
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~-~~---~~~~~~f- 78 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQANVI-ST---KQFEKGF- 78 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCc-CH---HHHHHHH-
Confidence 345566677777777777777765422111 12222222222221 1233344455555544432 11 1122222
Q ss_pred hCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHH
Q 043068 449 EEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALL 485 (526)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 485 (526)
.++++.+-+...+.|....+++.++..++
T Consensus 79 --------~~~~~~l~dl~~D~P~a~~~la~~~a~~v 107 (113)
T smart00544 79 --------WRLLEDIEDLELDIPNAWRNLAEFVARLI 107 (113)
T ss_pred --------HHHHhhChhhhcccccHHHHHHHHHHHHH
Confidence 12444445555566666666665555443
No 482
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.64 E-value=7.6e+02 Score=28.30 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--------CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--------TV--KPNLLAYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
++....|..|...+-+.|+.++|..+=.+. +. ..+...|..+.-.....++...|...+.+..
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 444555666666666666666666554433 11 1123344444444444445555555554443
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.62 E-value=5.8e+02 Score=29.17 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=88.3
Q ss_pred HHHHcCCCHHHHHH------HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-------HHcCCCCCCHHHH
Q 043068 131 KAYGDRGNVKAAIF------WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQI-------VKENVVPPDVSTY 197 (526)
Q Consensus 131 ~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~ 197 (526)
......|.+.+|.+ +++.....-.......|..+...+-+.|+.++|+..-... .... -+.+...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-s~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-SPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-CHHHHHHh
Confidence 33445566666666 6663322222244677888889999999999988764433 2222 13345566
Q ss_pred HHHHHHHHHcCChhhHHHHHHhC---------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C--CCC
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVM---------T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG-----C--RPN 260 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~---------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~--~p~ 260 (526)
..+.......++...|...+.+. . .+|...+++.+-..+...++++.|.++.+...... . -.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66766666677777777766654 2 23344455555555555688888888888776531 1 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKM 282 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~ 282 (526)
..+|..+.+.+...+++..|..
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHH
Confidence 3445555555544455444433
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.53 E-value=4.1e+02 Score=28.89 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=97.8
Q ss_pred cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 207 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
..+++++..+.+...+. =.++|.-+.+.|-.+-|+.+.+.= .+- ...+...|+++.|++.-.+
T Consensus 606 ~k~ydeVl~lI~ns~Lv-----GqaiIaYLqKkgypeiAL~FVkD~---------~tR---F~LaLe~gnle~ale~akk 668 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLV-----GQAIIAYLQKKGYPEIALHFVKDE---------RTR---FELALECGNLEVALEAAKK 668 (1202)
T ss_pred hhhhHHHHHHHHhcCcc-----cHHHHHHHHhcCCcceeeeeecCc---------chh---eeeehhcCCHHHHHHHHHh
Confidence 34555555555543211 113444455556555555544321 111 1234456777777665544
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
+ .+..+|..|.....+.|+.+-|+..|+.... |+.|--.|.-.|+.++-.++.+....++ |.
T Consensus 669 l------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~ 730 (1202)
T KOG0292|consen 669 L------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DA 730 (1202)
T ss_pred c------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hh
Confidence 2 4566788888888888888887777776543 4444445666777777776666554431 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 367 FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
. .....-.-.|++++-.++++..-.. | ..| +.+ ..+|.-++|.++.++..+.
T Consensus 731 ~---~~~qnalYl~dv~ervkIl~n~g~~---~--lay---lta--~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 731 T---GQFQNALYLGDVKERVKILENGGQL---P--LAY---LTA--AAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred H---HHHHHHHHhccHHHHHHHHHhcCcc---c--HHH---HHH--hhcCcHHHHHHHHHhhccc
Confidence 1 1122223357777777777654431 1 112 112 2357778888888777653
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.47 E-value=2.8e+02 Score=25.93 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 043068 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE----------NGELDRA 385 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 385 (526)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45677777777788777777777777777777888888887765 33335566655542 3566666
Q ss_pred HHHHHHc
Q 043068 386 ILLLKQM 392 (526)
Q Consensus 386 ~~~~~~~ 392 (526)
+++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6655543
No 486
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.22 E-value=6.3e+02 Score=27.03 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=28.8
Q ss_pred hhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 347 SDEAISLLKEM-RARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 347 ~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.++..+.+... ...|+..+......++... .|++..++.+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 34555555544 3446666666666665543 5888888888877654
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.04 E-value=3.8e+02 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=16.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCC
Q 043068 446 GYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.|.-.|+.++|.++.++..+...
T Consensus 178 ~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 178 YYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHH
Confidence 34568999999999888776653
No 488
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=32.04 E-value=4.8e+02 Score=25.24 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHcc
Q 043068 372 VFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~ 393 (526)
+++.|...|-.+.|.+.|..+.
T Consensus 223 LvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 223 LVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHhcC
Confidence 3444445555555555554444
No 489
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.33 E-value=30 Score=32.40 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=56.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
....|.++.|++.|...+... .+....|..-.+++.+.+++..|++=+....+.. +....-|-.--.+-...|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 345677777777777776653 3345556666667777777777777776666543 22222333333334446777777
Q ss_pred HHHHHHHHHcCCCCCH
Q 043068 316 VGYLRNVMEANMNPDV 331 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~ 331 (526)
...+....+.+..+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 7777777766554443
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.32 E-value=4.4e+02 Score=24.57 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 200 MIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
++..+.+.+++.+..+.++.+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~---~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK---TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444432 333444445555555666666555555443
No 491
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=29.65 E-value=24 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=17.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDV 194 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~ 194 (526)
.-+++.|...|..+...|.|||+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 347889999999998888888764
No 492
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.64 E-value=5.7e+02 Score=25.41 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 448 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 448 (526)
...|+.-|.-.|++.+|...++++--- +.-....+.+++.++-+. |+-...+.+++..-+.|.. |-+.+-.+|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk-~d~t~~ldLLk~cf~sglI----T~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKK-GDSTMILDLLKECFKSGLI----TTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCce----eHHHhhhhhh
Confidence 456677777777777777777765421 122345566666665544 6665666666666555432 3444445554
Q ss_pred hCC--------CHHHHHHHHHHHHHcC
Q 043068 449 EEG--------NVENVMQIAHEMVTKK 467 (526)
Q Consensus 449 ~~g--------~~~~a~~~~~~m~~~~ 467 (526)
+.. ++..|.+.|+...+.+
T Consensus 586 RV~dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 586 RVYDSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred hhhccCcccccCCCcHHHHHHHHHHHH
Confidence 422 2344555555544443
No 493
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.56 E-value=6.4e+02 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 335 EVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
-.++.++...++.+.|.++++++.+.
T Consensus 212 f~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 212 FYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 34445555555666666666665544
No 494
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.42 E-value=3.1e+02 Score=22.22 Aligned_cols=24 Identities=4% Similarity=0.232 Sum_probs=12.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 043068 337 VINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
|.-++.+.+++++++++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 334455555555555555555443
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.42 E-value=4.1e+02 Score=23.72 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHhcCCC-CCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 043068 66 TNPYHALFFFNWASNPN-PNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIF 144 (526)
Q Consensus 66 ~~~~~Al~~f~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 144 (526)
|+++.|+++.+.+++.+ |.|+.|..+..++.+ .--.+.|..-++.+...++.+...+...-....-+++..
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va-------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr- 168 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVA-------EEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR- 168 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHH-------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH-
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHH---------HhcCChhHHHHHHHHHHHcC
Q 043068 145 WFHQAKQIENGACLYSYNSLLGVL---------VRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~~ 188 (526)
...|..+...+ ...++...|..++++..+.+
T Consensus 169 -------------AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 169 -------------AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred -------------HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
No 496
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.82 E-value=5.2e+02 Score=24.64 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV------VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
++++..++++....+ .|.++.....|.++-- .-+|.....+|+-+......|-+ +.|-- -+..+..-++.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV-~LNRA-VAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVV-TLNRA-VALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeE-eehHH-HHHHHhhhHHhH
Confidence 677888888888777 4888888777766643 24677888888888777655432 33332 244555667888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHccc
Q 043068 351 ISLLKEMRARGLKPTVFSFNA-VFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 351 ~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
+.+.+-+...+---....|.. -...+.+.|+.++|..-|+....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 888888776532223333433 35667899999999999999887
No 497
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.61 E-value=2.5e+02 Score=21.40 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHcCChhhHHHHHHhCC
Q 043068 200 MIRGYCKMGMIENAKKVFDVMT 221 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~ 221 (526)
++.-|...|+.++|.+-+.+++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444444455555555555553
No 498
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=27.88 E-value=5.9e+02 Score=25.02 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043068 299 HKSMLKGLCV---VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG 345 (526)
Q Consensus 299 ~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (526)
+--+++++.| -.+.+.|+-++-+|++.|-.|-...-..++.++...|
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 3334455443 3456666666666666665555554444554544444
No 499
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.85 E-value=2.9e+02 Score=22.25 Aligned_cols=56 Identities=5% Similarity=0.042 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH
Q 043068 458 QIAHEMVTKKGRLLKLKNFLTRVVDALLLMWIVTGGSWISRFVFVHQVVVIMERTV 513 (526)
Q Consensus 458 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 513 (526)
++..++..+|...|....=--.++...+.++...-.-.+.--.++++.+..+++++
T Consensus 10 El~teLr~Rg~~VP~~V~E~lRlar~~l~~Y~~DPh~s~~~L~~~~~~Ln~~Q~~L 65 (170)
T COG4010 10 ELLTELRKRGVDVPTSVTEDLRLARTSLNFYKSDPHNSMKELKRINDMLNSIQEEL 65 (170)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 44455555565555444433444445555554444444445555556665555555
No 500
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=5.4e+02 Score=24.54 Aligned_cols=127 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHccc----CCCCcCHHHH
Q 043068 338 INGFCKIGKSDEAISLLKEMRAR--GLKPT-------VFSFNAVFRILVENGELDRAILLLKQMPQ----MDCLPNFVSY 404 (526)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~ 404 (526)
+......++.+++..++..+... |...+ ..+...+-+.|.+.|+.++-..+...... -+-.......
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 405 NTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY------SCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 405 ~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~------~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
..++..+....+..+.-..+..++++--.. .-.++ .-|+..|...+++.+|+.+...+..
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~-ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKR-EKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Done!