Query 043068
Match_columns 526
No_of_seqs 676 out of 3761
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 22:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-36 5.3E-41 314.5 43.5 402 56-472 88-551 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-35 4.8E-40 307.3 42.5 405 56-477 121-590 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3E-28 1E-32 238.3 45.5 367 99-475 6-377 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-28 1.1E-32 237.9 45.7 379 58-452 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 9.7E-31 3.3E-35 260.8 24.9 186 228-413 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 9.9E-31 3.4E-35 260.7 24.4 204 175-379 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.1E-24 7.3E-29 218.8 38.3 405 57-477 11-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.8E-23 9.5E-28 207.0 39.3 334 125-469 28-413 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.7E-23 9.2E-28 207.1 38.0 325 141-478 10-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 6.1E-23 2.1E-27 208.1 33.2 376 56-443 43-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 3.2E-22 1.1E-26 204.0 37.2 403 57-477 30-502 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 4.1E-20 1.4E-24 177.8 39.5 321 124-477 4-346 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 3.4E-20 1.2E-24 178.3 38.6 291 158-481 3-316 (359)
14 3fp2_A TPR repeat-containing p 99.9 4.5E-20 1.5E-24 188.1 37.5 369 92-474 25-465 (537)
15 3hym_B Cell division cycle pro 99.9 2.8E-19 9.6E-24 169.9 31.3 287 123-417 22-320 (330)
16 2xm6_A Protein corresponding t 99.9 3.8E-17 1.3E-21 164.5 47.3 353 92-469 39-435 (490)
17 3hym_B Cell division cycle pro 99.9 1.3E-18 4.4E-23 165.4 34.3 291 156-454 20-322 (330)
18 2xm6_A Protein corresponding t 99.8 7.9E-17 2.7E-21 162.1 44.5 380 57-468 44-469 (490)
19 4g1t_A Interferon-induced prot 99.8 3.1E-18 1.1E-22 171.6 33.7 368 92-477 51-470 (472)
20 1fch_A Peroxisomal targeting s 99.8 3.3E-19 1.1E-23 172.5 24.4 306 133-464 35-357 (368)
21 1fch_A Peroxisomal targeting s 99.8 1.3E-18 4.5E-23 168.2 26.8 264 125-393 66-357 (368)
22 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.6E-23 167.4 26.9 264 125-393 67-354 (365)
23 2ooe_A Cleavage stimulation fa 99.8 5.8E-16 2E-20 157.4 43.9 371 92-471 13-459 (530)
24 3cv0_A Peroxisome targeting si 99.8 8.9E-18 3.1E-22 159.3 27.8 261 128-394 26-314 (327)
25 2ooe_A Cleavage stimulation fa 99.8 5.7E-16 1.9E-20 157.5 41.1 395 63-469 23-495 (530)
26 4eqf_A PEX5-related protein; a 99.8 5.9E-18 2E-22 163.5 23.8 233 157-394 64-309 (365)
27 3mkr_A Coatomer subunit epsilo 99.8 1.8E-16 6.2E-21 147.4 32.2 273 101-389 8-288 (291)
28 3cv0_A Peroxisome targeting si 99.8 2.2E-17 7.5E-22 156.6 24.5 260 94-358 23-313 (327)
29 3mkr_A Coatomer subunit epsilo 99.8 1.5E-16 5E-21 148.1 28.1 274 61-353 8-287 (291)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.4E-22 158.7 21.0 293 58-392 9-308 (449)
31 1b89_A Protein (clathrin heavy 99.8 2.2E-18 7.4E-23 164.1 15.1 285 101-424 12-304 (449)
32 4g1t_A Interferon-induced prot 99.8 5.5E-16 1.9E-20 155.2 30.6 361 55-433 54-461 (472)
33 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-18 5.7E-23 177.6 12.1 118 226-343 127-248 (1134)
34 1xi4_A Clathrin heavy chain; a 99.8 3.1E-14 1E-18 150.9 44.0 356 57-458 990-1376(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-18 5.3E-23 177.8 10.0 129 260-392 126-258 (1134)
36 1xi4_A Clathrin heavy chain; a 99.7 3E-14 1E-18 150.9 41.5 352 55-461 1052-1440(1630)
37 3uq3_A Heat shock protein STI1 99.7 3.5E-15 1.2E-19 136.1 25.0 221 125-359 7-235 (258)
38 3uq3_A Heat shock protein STI1 99.7 6E-15 2E-19 134.5 25.4 227 226-467 5-237 (258)
39 2pl2_A Hypothetical conserved 99.7 7.3E-15 2.5E-19 130.4 21.8 207 123-357 5-211 (217)
40 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.6E-19 129.4 21.9 199 191-394 2-213 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.4E-15 1.8E-19 136.3 19.6 245 135-389 17-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-14 7.5E-19 142.2 25.2 377 56-466 7-421 (452)
43 2ho1_A Type 4 fimbrial biogene 99.7 6.9E-14 2.4E-18 127.1 26.1 205 264-473 40-245 (252)
44 1ouv_A Conserved hypothetical 99.6 7.3E-13 2.5E-17 122.0 33.0 225 225-468 5-253 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.8E-18 125.8 26.7 197 124-325 38-238 (252)
46 3u4t_A TPR repeat-containing p 99.6 2.1E-14 7.3E-19 132.2 22.0 232 128-394 8-249 (272)
47 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.8E-18 133.1 27.1 230 124-360 98-348 (382)
48 3u4t_A TPR repeat-containing p 99.6 2.5E-14 8.6E-19 131.7 21.5 245 227-477 4-261 (272)
49 2vq2_A PILW, putative fimbrial 99.6 2.2E-13 7.4E-18 121.2 26.9 198 159-359 9-210 (225)
50 2vq2_A PILW, putative fimbrial 99.6 2.5E-13 8.7E-18 120.8 27.0 210 261-474 8-219 (225)
51 2q7f_A YRRB protein; TPR, prot 99.6 3E-14 1E-18 128.7 21.0 197 124-325 24-222 (243)
52 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.8E-18 133.0 25.9 237 158-403 97-354 (382)
53 3e4b_A ALGK; tetratricopeptide 99.6 8.3E-14 2.8E-18 138.0 24.8 349 96-468 7-389 (452)
54 1ouv_A Conserved hypothetical 99.6 1.2E-12 4.1E-17 120.6 30.8 222 123-360 6-251 (273)
55 2q7f_A YRRB protein; TPR, prot 99.6 7.2E-14 2.5E-18 126.1 21.5 199 157-360 22-222 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.8E-14 2E-18 129.4 20.6 224 239-469 18-247 (275)
57 4a1s_A PINS, partner of inscut 99.6 6.4E-14 2.2E-18 137.4 18.7 267 127-394 52-371 (411)
58 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.6E-18 134.6 20.7 231 126-357 12-293 (406)
59 3sf4_A G-protein-signaling mod 99.6 2E-13 6.9E-18 133.3 21.6 296 156-454 7-364 (406)
60 3ro2_A PINS homolog, G-protein 99.6 7.5E-14 2.6E-18 132.4 16.8 266 127-393 9-330 (338)
61 4a1s_A PINS, partner of inscut 99.5 1.7E-13 5.9E-18 134.3 19.0 276 159-468 49-374 (411)
62 2ond_A Cleavage stimulation fa 99.5 6.5E-12 2.2E-16 117.9 27.9 214 175-394 33-269 (308)
63 4abn_A Tetratricopeptide repea 99.5 5.3E-13 1.8E-17 133.1 20.8 211 139-355 84-316 (474)
64 3ro2_A PINS homolog, G-protein 99.5 7.7E-13 2.6E-17 125.3 20.7 275 160-468 7-334 (338)
65 4e6h_A MRNA 3'-END-processing 99.5 1.1E-10 3.9E-15 119.7 37.8 405 59-476 73-580 (679)
66 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.8E-16 116.2 27.3 216 140-360 33-270 (308)
67 3ulq_A Response regulator aspa 99.5 1.7E-12 5.8E-17 126.0 21.9 233 232-468 109-370 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 5.5E-12 1.9E-16 108.5 22.7 166 225-394 4-169 (184)
69 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-12 3E-16 107.2 22.6 163 158-324 5-169 (184)
70 3ulq_A Response regulator aspa 99.5 7.1E-12 2.4E-16 121.6 23.9 291 134-431 23-368 (383)
71 4abn_A Tetratricopeptide repea 99.5 2.6E-12 8.7E-17 128.2 20.7 216 172-393 82-319 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-12 4.1E-17 122.7 15.7 242 226-468 27-309 (311)
73 3nf1_A KLC 1, kinesin light ch 99.4 4.4E-13 1.5E-17 125.7 12.1 165 125-289 29-223 (311)
74 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.5E-15 110.2 28.8 161 128-288 19-201 (373)
75 1hz4_A MALT regulatory protein 99.4 2.7E-10 9.3E-15 109.9 28.9 297 161-468 17-351 (373)
76 3q15_A PSP28, response regulat 99.4 1.6E-10 5.5E-15 111.8 26.9 230 234-467 109-366 (378)
77 3q15_A PSP28, response regulat 99.4 2.3E-10 7.9E-15 110.7 27.4 304 122-430 9-364 (378)
78 4e6h_A MRNA 3'-END-processing 99.4 4.2E-09 1.4E-13 108.1 36.7 392 67-469 47-536 (679)
79 3as5_A MAMA; tetratricopeptide 99.4 2.3E-10 7.7E-15 98.0 23.3 162 195-359 9-172 (186)
80 3as5_A MAMA; tetratricopeptide 99.3 1.1E-10 3.6E-15 100.0 20.0 159 126-288 11-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1E-10 3.5E-15 121.5 20.9 161 158-322 9-171 (723)
82 4i17_A Hypothetical protein; T 99.3 3.8E-10 1.3E-14 100.6 21.9 207 225-445 6-222 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.3E-10 4.4E-15 120.7 21.0 163 193-358 8-172 (723)
84 4i17_A Hypothetical protein; T 99.3 4E-10 1.4E-14 100.4 21.3 201 122-335 6-218 (228)
85 3mv2_B Coatomer subunit epsilo 99.3 8.6E-10 2.9E-14 100.7 22.0 208 165-392 20-237 (310)
86 3edt_B KLC 2, kinesin light ch 99.3 7.2E-11 2.4E-15 108.7 14.7 201 158-359 43-280 (283)
87 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.7E-15 105.3 14.5 229 237-466 12-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.2 1.5E-08 5.2E-13 92.5 26.1 176 213-394 85-281 (310)
89 1qqe_A Vesicular transport pro 99.1 3.4E-09 1.2E-13 98.4 20.0 171 173-359 32-227 (292)
90 1qqe_A Vesicular transport pro 99.1 8.6E-09 3E-13 95.6 22.0 200 176-394 3-227 (292)
91 3qky_A Outer membrane assembly 99.1 5.5E-09 1.9E-13 95.2 20.0 195 260-476 14-234 (261)
92 3urz_A Uncharacterized protein 99.1 7.3E-09 2.5E-13 90.8 19.3 159 231-394 9-185 (208)
93 2fo7_A Synthetic consensus TPR 99.1 9E-09 3.1E-13 82.5 18.4 129 228-359 3-131 (136)
94 3qky_A Outer membrane assembly 99.1 7E-09 2.4E-13 94.5 19.2 64 124-187 16-81 (261)
95 2fo7_A Synthetic consensus TPR 99.1 4.9E-09 1.7E-13 84.1 16.1 126 126-254 4-131 (136)
96 3dra_A Protein farnesyltransfe 99.1 1.5E-07 5E-12 86.8 26.9 218 136-358 46-285 (306)
97 3urz_A Uncharacterized protein 99.1 9.6E-09 3.3E-13 90.0 17.8 134 127-265 58-194 (208)
98 3qou_A Protein YBBN; thioredox 99.0 2.1E-08 7.2E-13 92.6 20.2 164 156-323 115-282 (287)
99 3dra_A Protein farnesyltransfe 99.0 1.5E-07 5.1E-12 86.8 25.5 223 240-468 47-290 (306)
100 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.7E-13 87.0 15.9 161 160-323 8-171 (176)
101 2pzi_A Probable serine/threoni 99.0 2.5E-09 8.7E-14 111.4 14.3 172 134-311 402-583 (681)
102 2pzi_A Probable serine/threoni 99.0 1.3E-08 4.5E-13 106.0 18.1 168 237-411 402-578 (681)
103 2r5s_A Uncharacterized protein 99.0 1.8E-08 6.3E-13 85.5 16.0 155 95-253 9-171 (176)
104 4ga2_A E3 SUMO-protein ligase 99.0 2.8E-09 9.6E-14 88.0 10.3 140 60-208 5-148 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.9E-08 1.7E-12 86.6 19.0 191 260-471 3-218 (225)
106 3qou_A Protein YBBN; thioredox 99.0 2.2E-08 7.5E-13 92.5 17.3 178 108-288 102-282 (287)
107 3rjv_A Putative SEL1 repeat pr 99.0 8.7E-08 3E-12 84.1 20.3 159 298-467 20-198 (212)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.2E-08 2.5E-12 85.5 19.9 62 194-255 4-70 (225)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 2.2E-08 7.6E-13 93.6 17.0 130 228-358 78-222 (307)
110 3rjv_A Putative SEL1 repeat pr 99.0 5.4E-08 1.9E-12 85.4 18.5 140 142-289 5-157 (212)
111 4ga2_A E3 SUMO-protein ligase 98.9 8.2E-09 2.8E-13 85.1 12.2 136 102-240 7-148 (150)
112 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.1E-13 102.1 17.7 147 106-255 3-157 (568)
113 2uy1_A Cleavage stimulation fa 98.9 1.2E-06 4E-11 87.2 29.0 204 243-465 196-412 (493)
114 2vsy_A XCC0866; transferase, g 98.9 4.8E-08 1.6E-12 99.8 18.9 162 136-302 2-168 (568)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5E-12 82.5 17.3 91 96-187 10-100 (213)
116 3q7a_A Farnesyltransferase alp 98.8 2.7E-06 9.4E-11 79.2 26.2 174 133-311 64-257 (349)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.7E-07 1.9E-11 78.7 20.1 128 196-326 8-151 (213)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 2.2E-07 7.6E-12 86.7 18.1 96 227-323 117-222 (307)
119 3q7a_A Farnesyltransferase alp 98.8 3.5E-06 1.2E-10 78.5 24.7 224 237-467 65-332 (349)
120 2uy1_A Cleavage stimulation fa 98.8 1.5E-05 5E-10 79.3 30.8 172 277-463 195-380 (493)
121 4gco_A Protein STI-1; structur 98.7 6.5E-07 2.2E-11 71.0 16.1 97 228-326 15-111 (126)
122 1a17_A Serine/threonine protei 98.7 8.9E-07 3E-11 73.8 17.8 127 228-357 15-143 (166)
123 4f3v_A ESX-1 secretion system 98.7 3E-07 1E-11 82.8 15.4 190 135-326 18-238 (282)
124 3u3w_A Transcriptional activat 98.7 2.7E-06 9.3E-11 78.6 22.5 164 302-466 81-266 (293)
125 3u3w_A Transcriptional activat 98.7 6.8E-07 2.3E-11 82.8 18.3 60 333-392 198-263 (293)
126 2c2l_A CHIP, carboxy terminus 98.7 1.1E-07 3.8E-12 87.4 12.7 99 225-325 3-101 (281)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 1E-06 3.6E-11 81.5 19.4 167 227-393 76-264 (293)
128 4f3v_A ESX-1 secretion system 98.7 9.9E-07 3.4E-11 79.4 17.7 186 170-360 18-237 (282)
129 1a17_A Serine/threonine protei 98.7 5.1E-07 1.7E-11 75.3 15.2 92 126-220 16-107 (166)
130 1na0_A Designed protein CTPR3; 98.7 1.8E-06 6E-11 67.8 17.1 97 227-325 10-106 (125)
131 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.5E-12 86.9 10.8 195 260-467 3-200 (281)
132 2vyi_A SGTA protein; chaperone 98.6 1.8E-06 6.2E-11 68.4 16.3 117 227-346 13-129 (131)
133 3gw4_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 79.1 13.1 61 125-185 28-93 (203)
134 2qfc_A PLCR protein; TPR, HTH, 98.6 1.8E-06 6.1E-11 79.9 18.2 161 127-287 79-263 (293)
135 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.8E-11 68.9 14.6 93 160-254 11-105 (125)
136 3gyz_A Chaperone protein IPGC; 98.6 3.5E-07 1.2E-11 75.0 11.8 99 226-326 36-134 (151)
137 4gco_A Protein STI-1; structur 98.6 1.9E-06 6.4E-11 68.3 15.6 96 263-360 15-110 (126)
138 2e2e_A Formate-dependent nitri 98.6 6.9E-07 2.4E-11 75.7 13.9 120 238-360 22-144 (177)
139 2e2e_A Formate-dependent nitri 98.6 5.3E-07 1.8E-11 76.4 12.9 132 342-476 21-154 (177)
140 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.8E-11 69.4 14.5 95 228-324 18-112 (133)
141 3gw4_A Uncharacterized protein 98.6 5.8E-07 2E-11 77.9 13.0 60 228-287 68-133 (203)
142 2fbn_A 70 kDa peptidylprolyl i 98.6 3.5E-07 1.2E-11 79.2 10.9 150 200-351 10-176 (198)
143 1p5q_A FKBP52, FK506-binding p 98.6 2E-06 6.9E-11 81.2 17.1 131 226-358 147-292 (336)
144 3dss_A Geranylgeranyl transfer 98.6 3.8E-05 1.3E-09 71.2 25.1 185 278-468 91-306 (331)
145 3gyz_A Chaperone protein IPGC; 98.6 1E-06 3.5E-11 72.2 12.8 92 126-220 39-130 (151)
146 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.7E-11 68.1 14.1 89 128-219 17-105 (131)
147 2vgx_A Chaperone SYCD; alterna 98.5 3.3E-07 1.1E-11 75.2 9.6 115 353-473 9-125 (148)
148 1p5q_A FKBP52, FK506-binding p 98.5 1.5E-06 5.2E-11 82.0 15.0 127 125-253 149-292 (336)
149 2lni_A Stress-induced-phosphop 98.5 2.1E-06 7.1E-11 68.4 13.7 114 92-208 16-132 (133)
150 3dss_A Geranylgeranyl transfer 98.5 4.7E-05 1.6E-09 70.6 24.0 29 312-341 209-237 (331)
151 2vgx_A Chaperone SYCD; alterna 98.5 1.6E-06 5.4E-11 71.0 12.5 92 126-220 24-115 (148)
152 3upv_A Heat shock protein STI1 98.5 6.4E-06 2.2E-10 65.1 15.0 96 228-325 6-101 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.7E-10 61.8 16.3 96 228-325 6-101 (118)
154 4b4t_Q 26S proteasome regulato 98.4 1.8E-05 6E-10 77.6 20.7 95 263-357 137-242 (434)
155 3upv_A Heat shock protein STI1 98.4 1E-05 3.5E-10 63.9 15.3 97 262-360 5-101 (126)
156 4gcn_A Protein STI-1; structur 98.4 3E-06 1E-10 67.3 11.9 94 160-255 10-112 (127)
157 2xcb_A PCRH, regulatory protei 98.4 2.6E-06 8.9E-11 69.1 11.6 104 366-473 18-122 (142)
158 4gcn_A Protein STI-1; structur 98.4 8.1E-06 2.8E-10 64.7 14.0 58 229-287 11-68 (127)
159 3sz7_A HSC70 cochaperone (SGT) 98.4 7.8E-06 2.7E-10 68.1 14.5 93 125-220 13-105 (164)
160 2xcb_A PCRH, regulatory protei 98.4 5.6E-06 1.9E-10 67.1 13.3 91 127-220 22-112 (142)
161 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.5E-10 61.4 14.9 92 126-220 7-98 (118)
162 2fbn_A 70 kDa peptidylprolyl i 98.3 6.4E-06 2.2E-10 71.1 13.3 125 126-252 41-183 (198)
163 2dba_A Smooth muscle cell asso 98.3 2.6E-05 8.8E-10 63.2 16.2 98 225-325 27-128 (148)
164 1hxi_A PEX5, peroxisome target 98.3 4.5E-06 1.6E-10 65.5 10.8 86 131-219 25-110 (121)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 1.6E-05 5.6E-10 66.1 14.9 98 226-325 11-108 (164)
166 1elr_A TPR2A-domain of HOP; HO 98.3 3.1E-06 1.1E-10 67.0 10.0 93 161-255 7-108 (131)
167 2dba_A Smooth muscle cell asso 98.3 1.4E-05 4.6E-10 64.9 14.0 106 365-474 27-136 (148)
168 2kck_A TPR repeat; tetratricop 98.3 8.4E-06 2.9E-10 62.4 12.1 96 228-325 8-106 (112)
169 1elr_A TPR2A-domain of HOP; HO 98.3 8.8E-06 3E-10 64.3 12.5 59 229-288 7-65 (131)
170 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.6E-10 64.1 13.6 92 125-219 11-102 (137)
171 2kck_A TPR repeat; tetratricop 98.3 8E-06 2.7E-10 62.5 11.6 94 160-255 8-106 (112)
172 4b4t_Q 26S proteasome regulato 98.3 2.8E-05 9.5E-10 76.1 18.3 194 131-324 12-244 (434)
173 3q49_B STIP1 homology and U bo 98.3 2.6E-05 9E-10 62.3 15.0 93 263-357 11-103 (137)
174 1hxi_A PEX5, peroxisome target 98.3 3.2E-06 1.1E-10 66.4 9.2 98 369-470 20-118 (121)
175 3ro3_A PINS homolog, G-protein 98.2 7.4E-06 2.5E-10 67.5 11.0 95 125-219 11-114 (164)
176 2xev_A YBGF; tetratricopeptide 98.2 3E-05 1E-09 61.2 12.6 98 371-472 7-111 (129)
177 3k9i_A BH0479 protein; putativ 98.2 3.8E-06 1.3E-10 65.5 6.9 83 136-220 3-87 (117)
178 3ro3_A PINS homolog, G-protein 98.2 2.3E-05 7.7E-10 64.5 12.0 96 228-323 11-116 (164)
179 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.9E-09 57.8 15.4 92 232-325 8-105 (129)
180 3k9i_A BH0479 protein; putativ 98.1 3.9E-06 1.3E-10 65.4 6.5 97 378-476 2-100 (117)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-05 8.1E-10 77.2 13.4 120 125-246 270-405 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.6E-05 1.6E-09 75.2 15.5 138 226-386 268-405 (457)
183 1wao_1 Serine/threonine protei 98.1 1.4E-05 5E-10 79.2 10.6 121 232-355 12-134 (477)
184 3rkv_A Putative peptidylprolyl 98.1 5.2E-05 1.8E-09 62.8 12.4 68 402-471 64-131 (162)
185 3rkv_A Putative peptidylprolyl 98.1 9.6E-05 3.3E-09 61.2 14.0 63 297-360 64-126 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.1 5.6E-05 1.9E-09 72.1 14.1 137 228-386 225-361 (370)
187 1wao_1 Serine/threonine protei 98.0 1.7E-05 6E-10 78.6 10.6 117 131-250 14-134 (477)
188 2hr2_A Hypothetical protein; a 98.0 7.8E-05 2.7E-09 60.5 11.7 71 403-474 59-139 (159)
189 1dce_A Protein (RAB geranylger 98.0 0.0003 1E-08 71.1 18.7 164 312-480 45-235 (567)
190 1ihg_A Cyclophilin 40; ppiase 98.0 6.4E-05 2.2E-09 71.8 13.0 119 126-247 226-362 (370)
191 1dce_A Protein (RAB geranylger 98.0 0.00026 9E-09 71.5 18.1 121 226-349 107-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 3.1E-05 1E-09 73.1 10.5 127 125-255 181-328 (338)
193 2hr2_A Hypothetical protein; a 98.0 9.7E-05 3.3E-09 60.0 11.7 92 126-219 14-127 (159)
194 2l6j_A TPR repeat-containing p 97.9 2.3E-05 7.9E-10 60.0 7.3 94 124-220 5-104 (111)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 73.2 9.1 146 227-394 180-327 (338)
196 3n71_A Histone lysine methyltr 97.8 7.3E-05 2.5E-09 73.7 10.1 121 168-288 319-462 (490)
197 1na3_A Designed protein CTPR2; 97.8 0.00041 1.4E-08 50.5 11.5 82 124-208 10-91 (91)
198 3n71_A Histone lysine methyltr 97.8 0.00014 4.8E-09 71.7 11.5 122 238-359 321-463 (490)
199 1klx_A Cysteine rich protein B 97.8 0.00034 1.2E-08 56.1 11.8 110 138-256 10-127 (138)
200 1klx_A Cysteine rich protein B 97.8 0.00079 2.7E-08 53.9 13.9 16 241-256 10-25 (138)
201 2kat_A Uncharacterized protein 97.7 0.00013 4.5E-09 56.3 8.9 77 141-220 3-79 (115)
202 2l6j_A TPR repeat-containing p 97.7 3.5E-05 1.2E-09 58.9 4.8 92 157-250 3-102 (111)
203 1na3_A Designed protein CTPR2; 97.6 0.0011 3.8E-08 48.0 11.5 24 300-323 47-70 (91)
204 2kat_A Uncharacterized protein 97.6 0.0005 1.7E-08 52.9 10.0 78 245-324 4-81 (115)
205 1zu2_A Mitochondrial import re 97.6 0.00011 3.9E-09 59.4 6.3 71 135-208 14-94 (158)
206 1zu2_A Mitochondrial import re 97.5 0.00039 1.3E-08 56.3 8.8 92 275-370 16-128 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.00044 1.5E-08 51.8 8.5 84 122-206 6-89 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.00074 2.5E-08 50.5 7.9 62 157-220 6-67 (100)
209 3ly7_A Transcriptional activat 97.2 0.011 3.9E-07 54.9 16.0 131 156-290 192-339 (372)
210 3ly7_A Transcriptional activat 97.1 0.055 1.9E-06 50.4 19.1 71 330-404 276-346 (372)
211 2kc7_A BFR218_protein; tetratr 97.1 0.0021 7.2E-08 47.6 7.8 66 129-197 6-72 (99)
212 3bee_A Putative YFRE protein; 97.0 0.011 3.7E-07 43.3 11.2 72 399-471 4-77 (93)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.046 1.6E-06 57.9 18.5 125 134-289 610-735 (814)
214 2kc7_A BFR218_protein; tetratr 96.8 0.011 3.8E-07 43.5 9.6 61 411-473 10-71 (99)
215 3qwp_A SET and MYND domain-con 96.7 0.024 8E-07 54.9 14.0 104 373-477 294-416 (429)
216 3mkq_B Coatomer subunit alpha; 96.7 0.093 3.2E-06 43.0 14.9 130 99-252 12-141 (177)
217 3qww_A SET and MYND domain-con 96.7 0.0049 1.7E-07 59.7 8.7 48 240-287 312-366 (433)
218 3mkq_A Coatomer beta'-subunit; 96.6 0.024 8.1E-07 60.2 14.6 183 63-281 610-803 (814)
219 3qwp_A SET and MYND domain-con 96.5 0.012 4.2E-07 56.9 10.7 88 271-358 297-398 (429)
220 1wy6_A Hypothetical protein ST 96.5 0.15 5.2E-06 39.2 13.9 83 207-292 74-156 (172)
221 3u64_A Protein TP_0956; tetrat 96.4 0.4 1.4E-05 42.8 18.4 92 242-335 179-281 (301)
222 2v5f_A Prolyl 4-hydroxylase su 96.4 0.041 1.4E-06 41.1 10.7 76 401-477 5-86 (104)
223 2v5f_A Prolyl 4-hydroxylase su 96.4 0.038 1.3E-06 41.3 10.3 73 124-198 6-84 (104)
224 3qww_A SET and MYND domain-con 96.2 0.0099 3.4E-07 57.5 8.0 99 415-518 311-421 (433)
225 3bee_A Putative YFRE protein; 96.2 0.061 2.1E-06 39.2 10.5 66 294-360 4-72 (93)
226 1pc2_A Mitochondria fission pr 96.2 0.032 1.1E-06 44.6 9.4 92 382-476 14-110 (152)
227 3mkq_B Coatomer subunit alpha; 96.2 0.39 1.3E-05 39.3 17.7 127 271-428 15-141 (177)
228 1pc2_A Mitochondria fission pr 95.7 0.11 3.7E-06 41.5 10.2 65 294-359 30-99 (152)
229 4ady_A RPN2, 26S proteasome re 95.2 3.4 0.00012 43.5 22.2 206 271-487 500-719 (963)
230 1nzn_A CGI-135 protein, fissio 94.6 0.25 8.6E-06 37.9 9.1 94 381-476 16-113 (126)
231 3u64_A Protein TP_0956; tetrat 94.6 0.32 1.1E-05 43.4 11.0 92 277-370 179-281 (301)
232 4h7y_A Dual specificity protei 94.4 0.55 1.9E-05 37.1 10.5 53 310-363 74-126 (161)
233 1wy6_A Hypothetical protein ST 94.1 1.6 5.4E-05 33.7 16.9 140 169-328 18-157 (172)
234 3lvg_A Clathrin heavy chain 1; 93.5 5.5E-05 1.9E-09 71.7 -15.8 231 93-354 55-285 (624)
235 1nzn_A CGI-135 protein, fissio 93.4 0.4 1.4E-05 36.8 8.1 64 330-394 34-102 (126)
236 4h7y_A Dual specificity protei 93.2 0.74 2.5E-05 36.3 9.4 103 225-329 12-127 (161)
237 4b4t_P 26S proteasome regulato 92.6 3.8 0.00013 39.6 15.9 50 66-115 30-79 (445)
238 3lvg_A Clathrin heavy chain 1; 92.4 3.7E-05 1.3E-09 72.9 -18.7 264 123-422 54-324 (624)
239 4gns_B Protein CSD3, chitin bi 92.2 0.51 1.7E-05 48.6 9.4 52 412-464 347-398 (754)
240 4fhn_B Nucleoporin NUP120; pro 92.1 7.2 0.00025 42.9 19.2 129 262-392 900-1047(1139)
241 3lpz_A GET4 (YOR164C homolog); 91.4 8.3 0.00029 35.2 20.5 168 195-393 36-214 (336)
242 3ffl_A Anaphase-promoting comp 91.4 1.2 4.2E-05 35.8 8.9 57 94-150 22-90 (167)
243 3o48_A Mitochondria fission 1 90.9 2.8 9.5E-05 32.3 10.0 79 398-476 37-117 (134)
244 4ady_A RPN2, 26S proteasome re 90.9 18 0.00063 38.2 23.4 257 132-394 383-657 (963)
245 4gns_B Protein CSD3, chitin bi 90.8 1.3 4.3E-05 45.7 10.6 50 307-357 348-397 (754)
246 2ff4_A Probable regulatory pro 90.3 0.98 3.4E-05 42.9 8.8 69 196-264 173-248 (388)
247 1y8m_A FIS1; mitochondria, unk 90.2 2.7 9.3E-05 32.8 9.5 61 416-476 56-116 (144)
248 2ff4_A Probable regulatory pro 89.6 1.7 5.8E-05 41.2 9.9 67 301-368 176-247 (388)
249 4fhn_B Nucleoporin NUP120; pro 89.5 13 0.00045 40.8 18.1 147 97-246 817-991 (1139)
250 1v54_E Cytochrome C oxidase po 87.0 3.1 0.00011 30.1 7.2 62 138-201 25-86 (109)
251 4b4t_P 26S proteasome regulato 86.9 23 0.00077 34.1 26.7 235 158-394 56-323 (445)
252 3o48_A Mitochondria fission 1 86.3 9.7 0.00033 29.3 10.3 73 328-402 37-112 (134)
253 1v54_E Cytochrome C oxidase po 84.4 9.7 0.00033 27.6 9.8 54 417-470 25-78 (109)
254 1zbp_A Hypothetical protein VP 84.1 14 0.00047 32.5 11.5 54 306-360 7-60 (273)
255 2wpv_A GET4, UPF0363 protein Y 84.1 24 0.00082 31.9 22.2 123 100-249 21-157 (312)
256 1qsa_A Protein (soluble lytic 84.1 38 0.0013 34.1 25.8 250 98-359 78-347 (618)
257 3ffl_A Anaphase-promoting comp 82.9 9.8 0.00033 30.6 9.3 57 231-287 25-89 (167)
258 1zbp_A Hypothetical protein VP 82.1 7.1 0.00024 34.3 8.9 53 376-430 7-59 (273)
259 4b4t_R RPN7, 26S proteasome re 81.7 17 0.0006 34.7 12.6 18 308-325 220-237 (429)
260 3eiq_C Programmed cell death p 81.5 19 0.00064 33.3 12.0 105 368-487 219-325 (358)
261 3txn_A 26S proteasome regulato 80.9 37 0.0013 31.9 24.4 17 452-468 329-345 (394)
262 3txn_A 26S proteasome regulato 80.8 38 0.0013 31.8 23.3 219 199-432 104-344 (394)
263 2y69_E Cytochrome C oxidase su 79.8 19 0.00064 27.7 9.8 54 417-470 68-121 (152)
264 2y69_E Cytochrome C oxidase su 78.8 15 0.00051 28.3 8.4 62 138-201 68-129 (152)
265 1y8m_A FIS1; mitochondria, unk 78.5 22 0.00074 27.8 12.2 22 338-359 84-105 (144)
266 2wpv_A GET4, UPF0363 protein Y 76.2 44 0.0015 30.1 20.6 165 97-288 38-215 (312)
267 4b4t_R RPN7, 26S proteasome re 76.2 27 0.00094 33.3 12.1 94 196-289 133-236 (429)
268 2uwj_G Type III export protein 73.4 23 0.00079 25.5 8.7 78 346-432 21-98 (115)
269 2p58_C Putative type III secre 72.8 24 0.00082 25.5 9.3 78 346-432 22-99 (116)
270 3esl_A Checkpoint serine/threo 69.7 23 0.0008 29.5 8.3 20 416-435 129-148 (202)
271 2uwj_G Type III export protein 67.5 32 0.0011 24.8 9.0 79 172-256 20-98 (115)
272 1bpo_A Protein (clathrin); cla 67.1 90 0.0031 29.8 14.0 47 172-220 409-455 (494)
273 2p58_C Putative type III secre 66.8 33 0.0011 24.8 9.7 79 172-256 21-99 (116)
274 2qx5_A Nucleoporin NIC96; mRNA 66.7 59 0.002 33.0 12.2 93 54-150 355-470 (661)
275 3lpz_A GET4 (YOR164C homolog); 65.9 80 0.0027 28.8 25.7 168 228-430 37-215 (336)
276 2nsz_A Programmed cell death p 64.8 45 0.0015 25.5 8.7 102 369-484 10-112 (129)
277 1wdy_A 2-5A-dependent ribonucl 64.8 13 0.00046 32.5 6.8 84 374-459 153-238 (285)
278 2nsz_A Programmed cell death p 64.0 46 0.0016 25.4 9.1 111 403-522 9-122 (129)
279 1qsa_A Protein (soluble lytic 63.9 1.3E+02 0.0043 30.3 31.3 324 106-466 53-410 (618)
280 3esl_A Checkpoint serine/threo 62.6 66 0.0023 26.7 11.4 55 240-294 93-148 (202)
281 1wdy_A 2-5A-dependent ribonucl 62.2 37 0.0013 29.5 9.2 48 343-390 191-240 (285)
282 2ion_A PDCD4, programmed cell 60.7 56 0.0019 25.8 8.8 103 369-485 12-115 (152)
283 4b4t_S RPN3, 26S proteasome re 60.6 1.3E+02 0.0044 29.4 12.9 63 125-187 233-299 (523)
284 4a1g_A Mitotic checkpoint seri 58.3 48 0.0016 26.2 7.8 48 421-468 84-132 (152)
285 2zu6_B Programmed cell death p 56.9 79 0.0027 28.4 10.2 104 369-487 169-274 (307)
286 2wvi_A Mitotic checkpoint seri 54.8 61 0.0021 26.0 8.0 48 421-468 79-127 (164)
287 4gq2_M Nucleoporin NUP120; bet 53.2 1.3E+02 0.0045 32.1 12.9 49 262-310 898-950 (950)
288 1k1a_A B-cell lymphoma 3-encod 53.0 54 0.0019 27.6 8.5 20 237-256 17-36 (241)
289 2ion_A PDCD4, programmed cell 52.1 64 0.0022 25.4 7.8 66 403-470 11-78 (152)
290 3l6a_A Eukaryotic translation 50.5 64 0.0022 29.9 8.7 26 333-358 14-39 (364)
291 3kea_A K1L; tropism, ANK repea 50.2 42 0.0014 29.7 7.4 47 100-146 36-82 (285)
292 2d2s_A Exocyst complex compone 48.9 95 0.0032 26.6 9.0 23 232-254 24-46 (235)
293 4gq2_M Nucleoporin NUP120; bet 48.8 2E+02 0.0069 30.7 13.4 53 97-150 815-867 (950)
294 4b4t_S RPN3, 26S proteasome re 45.1 1.6E+02 0.0053 28.8 10.6 62 93-154 232-301 (523)
295 3ltm_A Alpha-REP4; protein eng 44.2 1.3E+02 0.0045 24.6 20.6 17 193-209 63-79 (211)
296 2fe3_A Peroxide operon regulat 44.2 69 0.0024 24.9 6.9 44 165-209 28-71 (145)
297 4g8k_A 2-5A-dependent ribonucl 43.0 87 0.003 28.2 8.6 102 352-468 220-325 (337)
298 4aez_C MAD3, mitotic spindle c 42.7 97 0.0033 26.2 7.7 51 419-469 131-182 (223)
299 3ltm_A Alpha-REP4; protein eng 42.5 1.4E+02 0.0048 24.4 21.0 154 121-289 31-184 (211)
300 2r9g_A AAA ATPase, central reg 42.4 1.5E+02 0.005 24.6 9.9 17 240-256 28-44 (204)
301 1oai_A Nuclear RNA export fact 40.7 15 0.00051 23.6 1.9 23 172-194 34-56 (59)
302 3eu9_A Huntingtin-interacting 40.2 26 0.0009 29.6 4.3 20 444-463 214-233 (240)
303 3pvs_A Replication-associated 40.0 2.5E+02 0.0087 26.7 12.5 32 257-290 190-221 (447)
304 3mv2_A Coatomer subunit alpha; 39.1 2.2E+02 0.0075 25.7 11.9 50 139-188 186-237 (325)
305 4a1g_A Mitotic checkpoint seri 38.5 1.4E+02 0.0049 23.4 10.3 50 245-294 84-134 (152)
306 2xig_A Ferric uptake regulatio 38.3 1.1E+02 0.0039 23.8 7.3 47 163-210 31-77 (150)
307 4ets_A Ferric uptake regulatio 36.3 98 0.0033 24.6 6.7 47 163-210 37-85 (162)
308 4aez_C MAD3, mitotic spindle c 35.6 2E+02 0.0069 24.3 9.0 52 243-294 131-183 (223)
309 3t8k_A Uncharacterized protein 35.5 92 0.0031 25.3 6.7 56 205-260 14-69 (186)
310 3eu9_A Huntingtin-interacting 34.8 52 0.0018 27.6 5.3 17 103-119 17-33 (240)
311 2wvi_A Mitotic checkpoint seri 33.7 1.8E+02 0.0062 23.2 10.7 50 245-294 79-129 (164)
312 2zu6_B Programmed cell death p 33.0 2.7E+02 0.0092 24.9 14.7 26 197-222 6-31 (307)
313 1bpo_A Protein (clathrin); cla 31.4 3.6E+02 0.012 25.9 14.7 149 56-222 333-484 (494)
314 3bu8_A Telomeric repeat-bindin 31.2 1.8E+02 0.0061 24.4 7.3 23 165-187 121-143 (235)
315 3jxi_A Vanilloid receptor-rela 30.6 79 0.0027 27.1 5.9 21 445-465 230-250 (260)
316 2qx5_A Nucleoporin NIC96; mRNA 30.6 4.4E+02 0.015 26.7 13.3 88 374-463 451-564 (661)
317 2xdt_A Endoplasmic reticulum a 30.1 5.1E+02 0.018 27.3 15.4 89 162-254 684-778 (897)
318 3kea_A K1L; tropism, ANK repea 30.0 1.1E+02 0.0039 26.7 6.9 15 133-147 38-52 (285)
319 1n11_A Ankyrin; clathrin, BAND 29.6 67 0.0023 30.3 5.6 16 204-219 120-135 (437)
320 3bge_A Predicted ATPase; struc 29.5 2.4E+02 0.0082 23.3 9.1 20 240-259 21-40 (201)
321 2rfa_A Transient receptor pote 28.7 1.4E+02 0.0049 24.7 7.1 17 203-219 9-25 (232)
322 3ctd_A Putative ATPase, AAA fa 27.3 2.7E+02 0.0093 23.2 9.5 32 239-270 48-79 (213)
323 2rg8_A Programmed cell death p 26.9 2.3E+02 0.0078 22.6 7.4 23 371-393 15-37 (165)
324 1k1a_A B-cell lymphoma 3-encod 26.8 2E+02 0.0067 23.9 7.7 186 268-468 13-207 (241)
325 2fe3_A Peroxide operon regulat 26.7 2.2E+02 0.0075 21.9 7.3 59 322-381 13-71 (145)
326 2xig_A Ferric uptake regulatio 26.6 2.3E+02 0.0077 22.0 8.0 60 322-382 18-77 (150)
327 3hra_A Ankyrin repeat family p 26.1 88 0.003 25.3 5.1 16 103-118 13-28 (201)
328 2b7e_A PRE-mRNA processing pro 26.0 50 0.0017 21.1 2.5 29 348-376 3-31 (59)
329 1ug3_A EIF4GI, eukaryotic prot 25.9 1.9E+02 0.0065 26.3 7.6 23 371-393 16-38 (339)
330 3eyy_A Putative iron uptake re 23.9 1.3E+02 0.0044 23.3 5.3 44 165-210 25-68 (145)
331 1mzb_A Ferric uptake regulatio 23.7 2.1E+02 0.0073 21.7 6.5 46 164-210 23-69 (136)
332 2f6m_A Suppressor protein STP2 23.5 1.5E+02 0.0052 19.3 4.5 26 266-291 7-32 (65)
333 2rfa_A Transient receptor pote 23.3 2.3E+02 0.0079 23.3 7.4 17 101-117 9-25 (232)
334 3lxu_X Tripeptidyl-peptidase 2 23.1 2.4E+02 0.0083 31.2 8.6 35 343-379 1296-1330(1354)
335 3mkr_B Coatomer subunit alpha; 22.7 3.7E+02 0.013 24.2 8.4 29 160-188 200-228 (320)
336 3twr_A Tankyrase-2; ankyrin re 22.6 1.5E+02 0.0051 22.9 5.7 16 204-219 15-30 (165)
337 1n11_A Ankyrin; clathrin, BAND 22.3 2.5E+02 0.0087 26.2 8.2 265 99-391 51-333 (437)
338 4ets_A Ferric uptake regulatio 22.2 1.9E+02 0.0065 22.9 6.1 59 323-382 25-85 (162)
339 1mzb_A Ferric uptake regulatio 22.2 2.3E+02 0.0079 21.5 6.4 60 322-382 9-69 (136)
340 2w57_A Ferric uptake regulatio 21.7 1.6E+02 0.0055 22.9 5.5 46 164-210 22-68 (150)
341 3hra_A Ankyrin repeat family p 21.2 1.5E+02 0.0053 23.7 5.7 12 457-468 158-169 (201)
342 3f3f_C Nucleoporin NUP85; stru 21.1 1.9E+02 0.0063 28.5 6.6 81 132-215 490-570 (570)
343 4g8k_A 2-5A-dependent ribonucl 21.1 4.3E+02 0.015 23.3 13.7 52 63-120 33-84 (337)
344 3bu8_A Telomeric repeat-bindin 21.0 3.7E+02 0.013 22.6 12.3 18 341-358 124-141 (235)
345 3rjo_A Endoplasmic reticulum a 20.8 5.2E+02 0.018 24.1 15.0 166 162-329 201-373 (419)
346 2jul_A Calsenilin; EF-hand, ca 20.7 3.5E+02 0.012 22.9 8.2 42 211-252 213-255 (256)
347 3ltj_A Alpharep-4; protein eng 20.7 3.3E+02 0.011 21.8 22.6 111 156-276 57-167 (201)
348 3eyy_A Putative iron uptake re 20.7 2.1E+02 0.0073 22.0 6.0 58 322-381 10-67 (145)
349 3utm_A Tankyrase-1; tankyrase, 20.6 3.5E+02 0.012 23.9 8.6 17 416-436 258-274 (351)
350 3jxi_A Vanilloid receptor-rela 20.3 28 0.00095 30.1 0.7 26 235-260 11-36 (260)
351 1wty_A Hypothetical protein TT 20.2 1.8E+02 0.0062 21.5 5.2 76 382-465 4-80 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-36 Score=314.50 Aligned_cols=402 Identities=10% Similarity=-0.011 Sum_probs=350.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNS--NKLSDFFISKLIKAY 133 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~ 133 (526)
+.+++.+.+.|++++|+.+|+.+....|+ ..++..++.++.+.|++++|..++++. ...++.+++.++.+|
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDITGN-------PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhCCC-------chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 45566777799999999999999865442 246788999999999999999999987 467788999999999
Q ss_pred HcCCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 043068 134 GDRGNVKAAIFWFHQAKQI---------------ENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYT 198 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 198 (526)
.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|+++|+++.+.+ |.+...+.
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 238 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFD 238 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHH
Confidence 9999999999999953321 112357899999999999999999999999999886 55665555
Q ss_pred HH--------------------------------------HHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 043068 199 TM--------------------------------------IRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKK 239 (526)
Q Consensus 199 ~l--------------------------------------i~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~ 239 (526)
.+ +..|.+.|++++|.++|+++ ..+++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 44 45566789999999999998 4468999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHH
Q 043068 240 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYL 319 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (526)
|++++|+++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999987644 77889999999999999999999999998765 678899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc
Q 043068 320 RNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP 399 (526)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 399 (526)
+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.
T Consensus 397 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 999987543 78899999999999999999999999998874 3478899999999999999999999999998753 34
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 400 NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 400 ~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
+..+|+.+...+++. |++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++++.++..+.
T Consensus 474 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 474 DPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred ChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 688899999998876 9999999999999886 66777 789999999999999999999999999999875553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=307.32 Aligned_cols=405 Identities=12% Similarity=0.077 Sum_probs=352.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCC-------------
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLS------------- 122 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------- 122 (526)
..+..++...|++++|+.+|+.+... ..+..+++.++.+|.+.|++++|..+|++..+..
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLY-------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGG-------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 45667777899999999999988643 2345679999999999999999999999654443
Q ss_pred ------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------------------------
Q 043068 123 ------DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSL-------------------------------- 164 (526)
Q Consensus 123 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------------------------------- 164 (526)
..+++.++.+|.+.|++++|+++|+++.+.++ .+...+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 66899999999999999999999999988764 233333333
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHH
Q 043068 165 ------LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGF 236 (526)
Q Consensus 165 ------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~ 236 (526)
+..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++ ..+.+..+++.++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 45566789999999999999865 579999999999999999999999999998 2244777899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHH
Q 043068 237 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAV 316 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (526)
.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999764 4478899999999999999999999999998765 567889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-
Q 043068 317 GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM- 395 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 395 (526)
++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 999999987643 78899999999999999999999999998764 347889999999999999999999999999874
Q ss_pred ---CCCcC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 396 ---DCLPN--FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 396 ---~~~p~--~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
+..|+ ..+|..+...+++. |++++|.++++++.+.++ .+..+|..++.+|.+.|++++|.+.|+++++.++..
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 55787 78999999998876 999999999999998763 389999999999999999999999999999999877
Q ss_pred cchhhhH
Q 043068 471 LKLKNFL 477 (526)
Q Consensus 471 ~~~~~~~ 477 (526)
+.....+
T Consensus 584 ~~~~~~l 590 (597)
T 2xpi_A 584 IMASDLL 590 (597)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6544443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=3e-28 Score=238.25 Aligned_cols=367 Identities=13% Similarity=0.046 Sum_probs=268.6
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068 99 TDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK 175 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (526)
+..+.+.|++++|...+++.. +.+...+..+...+...|++++|...++......+ .+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 344445555565555554432 22334455666667777788888887777776553 45677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043068 176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMM 253 (526)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (526)
+|++.|+++.+.. |.+..+|..+..++.+.|++++|.+.|+++ ...| +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887765 666777888888888888888888888776 3333 34556677777777888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068 254 NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS 333 (526)
Q Consensus 254 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 333 (526)
+.... +..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..+. +..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 76322 56777888888888888888888888887765 556677788888888888888888888888776543 5777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068 334 YEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM 413 (526)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 413 (526)
+..+...|.+.|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 8888888888888888888888887763 2245677888888888888888888888887642 3456677777777665
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhh
Q 043068 414 AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKN 475 (526)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 475 (526)
. |++++|.+.++++++.. +.+..++..++.+|.+.|++++|.+.++++++..+..++...
T Consensus 318 ~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 318 Q-GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp T-TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred c-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4 88888888888887753 236778888888888888888888888888887775554433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=3.3e-28 Score=237.94 Aligned_cols=379 Identities=16% Similarity=0.106 Sum_probs=329.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYG 134 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 134 (526)
+...+...|++++|+..|+.+.+..|+ +...+..++.++...|++++|...++... +.+...+..+...|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 455677799999999999999877653 23457888999999999999999988643 556678999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHH
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAK 214 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (526)
+.|++++|++.|+++....+ .+..+|..+..++.+.|++++|.+.|+++++.. |.+...+..+...+...|++++|.
T Consensus 79 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999988763 456789999999999999999999999999986 777888999999999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043068 215 KVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF 292 (526)
Q Consensus 215 ~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (526)
+.|+++ .. +.+..+|..+...+.+.|++++|+..|+++.+.+.. +...|..+...+...|++++|...++++.+..
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999987 32 345789999999999999999999999999987543 67789999999999999999999999998765
Q ss_pred CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 293 KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAV 372 (526)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 372 (526)
+.+..++..+...|.+.|++++|...++++.+.++. +..+|..+...+.+.|++++|++.|+++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 567889999999999999999999999999997644 67889999999999999999999999998763 4577899999
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043068 373 FRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN 452 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 452 (526)
...+.+.|++++|.+.++++.+.. +.+...+..+...++.. |++++|.+.++++++..+. +...|..+...+.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 999999999999999999998843 33467788888887775 9999999999999986543 67888888888877664
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.7e-31 Score=260.78 Aligned_cols=186 Identities=16% Similarity=0.258 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHh
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR---------VDEAKMLMAKMRLNGFKDNVST 298 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 298 (526)
.++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. +++|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765543 5666667777766666677777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 043068 299 HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE 378 (526)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 378 (526)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777766666667777777777777777777777777777666666777777777777777
Q ss_pred cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 043068 379 NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM 413 (526)
Q Consensus 379 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 413 (526)
.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777666666776677666666543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.9e-31 Score=260.71 Aligned_cols=204 Identities=15% Similarity=0.189 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---------
Q 043068 175 KLAEEFFHQIVKENVVPPD-VSTYTTMIRGYCKMGMIENAKKVFDVM---TVKPNLLAYNTMINGFCKKGE--------- 241 (526)
Q Consensus 175 ~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~g~--------- 241 (526)
..+..+.+++.+.+ +... ...++.+|.+|++.|++++|.++|++| |+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 44556667776666 3333 456889999999999999999999999 899999999999999998665
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN 321 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (526)
+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN 379 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 379 (526)
|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-24 Score=218.83 Aligned_cols=405 Identities=11% Similarity=0.031 Sum_probs=317.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY 133 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 133 (526)
.....+...|++++|+..|+.+....| +..+|..++.++.+.|++++|...+++.. +.+...+..++.+|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKE-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 345667778999999999999998764 24578889999999999999999998654 44566888899999
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----------------------------
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV---------------------------- 185 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------------------- 185 (526)
...|++++|+..|+++...++ ++......++..+.+......+.+.+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999988774 344444444444443322222222221110
Q ss_pred ------HcCC---------CCCCHHHHHHHHHHHHH---cCChhhHHHHHHhC-C-----C----------CCCHHHHHH
Q 043068 186 ------KENV---------VPPDVSTYTTMIRGYCK---MGMIENAKKVFDVM-T-----V----------KPNLLAYNT 231 (526)
Q Consensus 186 ------~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~-~-----~----------~p~~~~~~~ 231 (526)
.... -+.+...+..+...+.. .|++++|...|+++ . . +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0000 01225555555555554 89999999999886 3 2 234567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999987543 8889999999999999999999999998765 5677889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
+++|...++++.+.... +...+..+...|...|++++|+..++++.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999987654 67789999999999999999999999998763 23567888999999999999999999999
Q ss_pred cccCCCCcC-------HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043068 392 MPQMDCLPN-------FVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHE 462 (526)
Q Consensus 392 ~~~~~~~p~-------~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 462 (526)
+.+.. |+ ...+..+...+... .|++++|...++++++.... +..++..+..+|.+.|++++|...+++
T Consensus 398 a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 398 AIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 87632 32 22677777676651 49999999999999987544 788999999999999999999999999
Q ss_pred HHHcCCCccchhhhH
Q 043068 463 MVTKKGRLLKLKNFL 477 (526)
Q Consensus 463 m~~~~~~~~~~~~~~ 477 (526)
+++.++..+.....+
T Consensus 475 a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 475 SADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHCSSHHHHHHHH
T ss_pred HHHhccccHHHHHHH
Confidence 999999777665554
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.8e-23 Score=207.05 Aligned_cols=334 Identities=13% Similarity=0.101 Sum_probs=209.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..++..|.+.|++++|+.+|+++....+ .+..+|..+..++...|++++|.+.|+++++.+ |.+..++..++.+|
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence 445555566666666666666666655442 345556666666666666666666666666554 45556666666666
Q ss_pred HHcCChhhHHHHHHhC-CCCCCH----HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068 205 CKMGMIENAKKVFDVM-TVKPNL----LAYNTM------------INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAM 267 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (526)
.+.|++++|.+.|+++ ...|+. ..+..+ ...+.+.|++++|+..|+++.+... .+..++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 6666666666666655 333332 333333 3346667777777777777766532 256667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 043068 268 IYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV---------- 337 (526)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---------- 337 (526)
..+|.+.|++++|..+|+++.+.. +.+..++..++..|...|++++|...++++.+..+. +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776553 455667777777777777777777777777765433 34444433
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 043068 338 --INGFCKIGKSDEAISLLKEMRARGLKPT-----VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICG 410 (526)
Q Consensus 338 --i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 410 (526)
...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|++.++++.+.. +.+...|..+...
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 66777777888888888777664 333 3356677777777788888888877776532 2245666666666
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHH-HHHcCCC
Q 043068 411 LCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKG------------YCEEG-----NVENVMQIAHE-MVTKKGR 469 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-m~~~~~~ 469 (526)
+... |++++|...++++++..+. +..++..+..+ |...| +.+++.+.+++ .++..++
T Consensus 339 ~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 339 YLIE-EMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHh-cCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 5544 7888888888877775433 55566666532 43444 56777888886 4555553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.7e-23 Score=207.13 Aligned_cols=325 Identities=12% Similarity=0.088 Sum_probs=267.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
.+...+.+.....+ .+...+..+...+.+.|++++|+++|+++++.. |.+..++..++.++...|++++|.+.|+++
T Consensus 10 ~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555554443 557889999999999999999999999999876 788999999999999999999999999987
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHHcCCHHHHHH
Q 043068 221 -T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAM------------IYGLCINGRVDEAKM 282 (526)
Q Consensus 221 -~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~g~~~~a~~ 282 (526)
. .+.+...+..++.+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+.+.|++++|+.
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 2446788999999999999999999999999986 3443 455554 445889999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068 283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362 (526)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 362 (526)
.|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.... +..++..++..|...|++++|+..|+++.+.
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 240 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 240 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999998875 678889999999999999999999999999987543 7889999999999999999999999999876
Q ss_pred CCC-HHHHHHH------------HHHHHHcCCHHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCCCHHHHHHH
Q 043068 363 KPT-VFSFNAV------------FRILVENGELDRAILLLKQMPQMDCLPN-----FVSYNTIICGLCMAKGRMQDVEDL 424 (526)
Q Consensus 363 ~p~-~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~g~~~~a~~~ 424 (526)
.|+ ...+..+ ...+.+.|++++|.+.|+++.+. .|+ ...+..+...+.+. |++++|...
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD-EKPVEAIRV 317 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 343 3444444 78899999999999999999873 355 34677777777665 999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhHH
Q 043068 425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLT 478 (526)
Q Consensus 425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 478 (526)
++++++..+. +..+|..++.+|...|++++|.+.++++++..+..+.....+.
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999986433 7899999999999999999999999999999987776655554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.1e-23 Score=208.09 Aligned_cols=376 Identities=9% Similarity=-0.061 Sum_probs=277.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKA 132 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~ 132 (526)
..+..++...|++++|+..|+.+.+..| ....+|..++.++.+.|++++|...+++.. +.+......++..
T Consensus 43 ~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 43 SNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3456677779999999999999997765 234679999999999999999999998653 2222222223332
Q ss_pred HHcCCCHHHHHHHHH-----------------------------------HHHhcCCC---------CChhhHHHHHHHH
Q 043068 133 YGDRGNVKAAIFWFH-----------------------------------QAKQIENG---------ACLYSYNSLLGVL 168 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~-----------------------------------~~~~~~~~---------~~~~~~~~li~~~ 168 (526)
+........+.+.+. .+...... .+...+......+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 222211111111111 11111100 1133444444444
Q ss_pred Hh---cCChhHHHHHHHHHHH-----cCCC-------CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHH
Q 043068 169 VR---VNSIKLAEEFFHQIVK-----ENVV-------PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTM 232 (526)
Q Consensus 169 ~~---~g~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 232 (526)
.. .|++++|...|+++.+ .... +.+..++..+...+...|++++|.+.|+++ ...|+...+..+
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l 276 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHH
Confidence 44 7999999999999987 3111 234567888999999999999999999987 334557788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068 233 INGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 312 (526)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (526)
...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887433 67788899999999999999999999998865 55678889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHH
Q 043068 313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PT----VFSFNAVFRILVE---NGELDR 384 (526)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~ 384 (526)
++|...++++.+.... +...+..+...|...|++++|+..++++.+.... ++ ...+..+...+.. .|++++
T Consensus 355 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 9999999999887544 6678889999999999999999999998764211 11 3378889999999 999999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCL 443 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 443 (526)
|.+.++++.+.. +.+...+..+...+... |++++|...++++++..+. +...+..+
T Consensus 434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQ-EDIDEAITLFEESADLART-MEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 999999988743 23456666677666665 9999999999999986543 34444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.2e-22 Score=204.03 Aligned_cols=403 Identities=13% Similarity=0.099 Sum_probs=305.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAY 133 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 133 (526)
.+...+...|++++|+..|+.+....|+ +..+|..++.++.+.|++++|...+++.. +.+...+..+...|
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4566777799999999999999987653 35679999999999999999999999754 44566888999999
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCCHH-------------
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN-----VVPPDVS------------- 195 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~------------- 195 (526)
...|++++|+..|+ ..... |+. ....+..+...+....|...++++.... ...|+..
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 43333 221 1223445555666678888888876531 0112221
Q ss_pred -----------------HHHHHHHHHH--------HcCChhhHHHHHHhC-CCCCC--------HHHHHHHHHHHHhcCC
Q 043068 196 -----------------TYTTMIRGYC--------KMGMIENAKKVFDVM-TVKPN--------LLAYNTMINGFCKKGE 241 (526)
Q Consensus 196 -----------------~~~~li~~~~--------~~g~~~~A~~~~~~~-~~~p~--------~~~~~~li~~~~~~g~ 241 (526)
....+...+. ..|++++|.++++++ ...|+ ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1222222221 125788999999887 44444 3357777888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRN 321 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (526)
+++|.+.|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999987 5568889999999999999999999999998876 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCC-----
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMD----- 396 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----- 396 (526)
+.+..+. +...+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9987654 56789999999999999999999999998763 3356788999999999999999999999987632
Q ss_pred CCcCHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 397 CLPNFVSYNTIICGLCMAK----------GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 397 ~~p~~~~~~~ll~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
.......+......+ ... |++++|...++++++..+. +..++..+..+|.+.|++++|.+.|++.++.
T Consensus 414 ~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 001111122222222 234 8999999999999987544 7889999999999999999999999999999
Q ss_pred CCCccchhhhH
Q 043068 467 KGRLLKLKNFL 477 (526)
Q Consensus 467 ~~~~~~~~~~~ 477 (526)
.+..+......
T Consensus 492 ~~~~~~~~~~~ 502 (537)
T 3fp2_A 492 ARTMDEKLQAT 502 (537)
T ss_dssp C--CHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 98777655543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.1e-20 Score=177.80 Aligned_cols=321 Identities=11% Similarity=0.074 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG 203 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 203 (526)
..+..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...|+++.+.. |.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence 3455667777777888888888887776654 456677777777778888888888888877765 5667777777777
Q ss_pred HHHcCChhhHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 043068 204 YCKMGMIENAKKVFDVM-TVKP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVD 278 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (526)
+...|++++|.+.|+++ ...| +...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 88888888888777776 4444 2233333311000 001112233444445555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 279 EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554444433 334444444555555555555555555554444322 44445555555555555555555555544
Q ss_pred HCCCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH-----HHHHHHHHHHhcCCCHHHH
Q 043068 359 ARGLKPTVFSF------------NAVFRILVENGELDRAILLLKQMPQMDCLPNFV-----SYNTIICGLCMAKGRMQDV 421 (526)
Q Consensus 359 ~~~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~g~~~~a 421 (526)
+... .+...+ ..+...+.+.|++++|.+.++++.+.. |+.. .+..+...+.. .|++++|
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~-~~~~~~A 291 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK-DEKPVEA 291 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH-ccCHHHH
Confidence 4311 111111 123556777788888888887777632 3321 23334444444 4888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 422 EDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 422 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
...++++++..+. +..+|..+..+|.+.|++++|.+.++++++..+..+.....+
T Consensus 292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 8888888876433 677888888888888888888888888888887666554443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.4e-20 Score=178.35 Aligned_cols=291 Identities=14% Similarity=0.154 Sum_probs=219.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMING 235 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~ 235 (526)
+..+..+...+...|++++|+..|+++++.. |.+..++..+...+...|++++|.+.|+++ .. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4556677778888888888888888888775 667778888888888888888888888776 22 2356677777788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRP----NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
+...|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 88888888888888877765 33 2222222221110 1123345678899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
+++|...++++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.+++
T Consensus 136 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988654 78899999999999999999999999998763 34678899999999999999999999999
Q ss_pred cccCCCCcCH-HHHHH------------HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHH
Q 043068 392 MPQMDCLPNF-VSYNT------------IICGLCMAKGRMQDVEDLVDRMIRSGHNLDF----TMYSCLLKGYCEEGNVE 454 (526)
Q Consensus 392 ~~~~~~~p~~-~~~~~------------ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 454 (526)
..+.. |+. ..+.. +...+... |++++|...++++++..+. +. ..+..+..+|.+.|+++
T Consensus 214 a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 98743 432 22221 13345554 9999999999999986544 44 33566888999999999
Q ss_pred HHHHHHHHHHHcCCCccchhhhHHHHH
Q 043068 455 NVMQIAHEMVTKKGRLLKLKNFLTRVV 481 (526)
Q Consensus 455 ~a~~~~~~m~~~~~~~~~~~~~~~~~~ 481 (526)
+|.+.+++.++.++..+.....++.+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 999999999999887766555544433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.5e-20 Score=188.14 Aligned_cols=369 Identities=9% Similarity=0.018 Sum_probs=275.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068 92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168 (526)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (526)
...|..++..+.+.|++++|...+++.. +.++..+..+..+|...|++++|++.|+++...++ .+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 3467888999999999999999988754 45567888899999999999999999999988774 4678888899999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--------CCCHH------------
Q 043068 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV--------KPNLL------------ 227 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--------~p~~~------------ 227 (526)
...|++++|.+.|+.+ ... |+. ....+..+...+...+|...++++ .. .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN---GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHH-hcC---CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999633 322 221 122233444455556666666654 11 12211
Q ss_pred ------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHc
Q 043068 228 ------------------AYNTMINGFC--------KKGELEEAKKCMNEMMNRGCRPN-------ELTYNAMIYGLCIN 274 (526)
Q Consensus 228 ------------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~ 274 (526)
....+...+. ..|++++|..+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 1122222211 125789999999999876332 2 23567777888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068 275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL 354 (526)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (526)
|++++|...++++.+.. |+..++..+...+...|++++|...++++.+..+. +..++..+...+...|++++|+..+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998864 55888999999999999999999999999987654 7888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 043068 355 KEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN 434 (526)
Q Consensus 355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~ 434 (526)
+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.+.++++++....
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDR-GDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCc
Confidence 9998764 2256788999999999999999999999998743 23345666666666655 9999999999999875321
Q ss_pred -----CCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCccchh
Q 043068 435 -----LDFTMYSCLLKGYCEE----------GNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 435 -----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
.....+..+..++.+. |++++|...++++++..+..+...
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1223355566778888 999999999999999988666443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.8e-19 Score=169.94 Aligned_cols=287 Identities=12% Similarity=0.026 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
+..+..++..+...|++++|+++|+++....+ .+...+..++..+...|++++|..+++++.+.. |.+..++..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 34455666677777777777777777776653 345566666777777777777777777777765 566777777777
Q ss_pred HHHHcC-ChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068 203 GYCKMG-MIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE 279 (526)
Q Consensus 203 ~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (526)
.+...| ++++|.+.|++. ...| +...|..+...+...|++++|++.|+++.+.... +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 777777 777777777765 2223 4556777777777777777777777777766332 34556667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCChhHHH
Q 043068 280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM--------NPDVKSYEVVINGFCKIGKSDEAI 351 (526)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~ 351 (526)
|...++++.+.. +.+..++..+...+...|++++|...++++.+... ..+..++..+...|...|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777776654 45566677777777777777777777777665321 223456666667777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCC
Q 043068 352 SLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGR 417 (526)
Q Consensus 352 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~ 417 (526)
..+++..+.. +.+...+..+...+.+.|++++|.+.++++.+. .| +...+..+...+....|+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 7777666542 224556666666666777777777777766653 23 334444444443233344
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.8e-17 Score=164.45 Aligned_cols=353 Identities=12% Similarity=0.049 Sum_probs=292.3
Q ss_pred hhhHHHHHHHHHh----CCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCChhhHH
Q 043068 92 TPCYTAITDVLLS----HSLISIAASLLKNSNK-LSDFFISKLIKAYGD----RGNVKAAIFWFHQAKQIENGACLYSYN 162 (526)
Q Consensus 92 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 162 (526)
..++..++..+.. .+++++|..++++... -++..+..|...|.. .+++++|+++|++....+ +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3456777777777 7899999999987543 355677788888888 899999999999988765 567788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHH
Q 043068 163 SLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMIN 234 (526)
Q Consensus 163 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~ 234 (526)
.|...|.. .+++++|.+.|++..+.+ +...+..|...|.. .++.++|.++|++.-...+...+..+..
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888 789999999999998876 67888889998887 7899999999998722347888888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 235 GFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 235 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
.|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9988 899999999999998875 56778888888886 789999999999998754 456777788888
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 307 CV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI-----GKSDEAISLLKEMRARGLKPTVFSFNAVFRILV 377 (526)
Q Consensus 307 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 377 (526)
.. .++.++|..+|++..+.+ +...+..+...|... +++++|+..|++..+.| +...+..+...|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88 899999999999998764 566788888888887 89999999999998875 4567777888888
Q ss_pred HcC---CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 043068 378 ENG---ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE-- 449 (526)
Q Consensus 378 ~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 449 (526)
+.| +.++|+++|++..+.+ +...+..+-..+... .++.++|.+++++..+.| ++..+..|...|.+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 766 7899999999998864 455666666666551 389999999999999875 57788999999998
Q ss_pred --CCCHHHHHHHHHHHHHcCCC
Q 043068 450 --EGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~~ 469 (526)
.++.++|...|++..+.++.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999999864
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-18 Score=165.38 Aligned_cols=291 Identities=11% Similarity=0.002 Sum_probs=182.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHH
Q 043068 156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMI 233 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li 233 (526)
.+...+..+...+...|++++|.++|+++.+.. |.+..++..++.++...|++++|..+++++ ..+.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 445556666666667777777777777776665 555556666666677777777777777665 1123455666666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068 234 NGFCKKG-ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 312 (526)
Q Consensus 234 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (526)
..+...| ++++|.+.|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 677777777777665322 45566667777777777777777777766654 33455566667777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHH
Q 043068 313 DQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG--------LKPTVFSFNAVFRILVENGELDR 384 (526)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 384 (526)
++|...++++.+..+. +...+..+...+...|++++|+..++++.+.. ......++..+...+.+.|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665433 56666677777777777777777777665431 02234566667777777777777
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHH
Q 043068 385 AILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY-CEEGNVE 454 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 454 (526)
|.+.++++.+.. +.+...+..+...+... |++++|.+.++++++..+. +...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLM-GNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 777777766532 12334455555554444 7777777777776664332 566666666666 3445443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=7.9e-17 Score=162.13 Aligned_cols=380 Identities=11% Similarity=0.073 Sum_probs=305.6
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHh----CCCHHHHHHHHHhcCCC-CHHHHH
Q 043068 57 IVTKVIYE----QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLS----HSLISIAASLLKNSNKL-SDFFIS 127 (526)
Q Consensus 57 ~l~~~l~~----~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~ 127 (526)
.+...+.. .+++++|+.+|+.+.+.+ ...++..++..+.. .+++++|..++++.... ++..+.
T Consensus 44 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 44 ELGYRYFQGNETTKDLTQAMDWFRRAAEQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555665 789999999999998642 24578889999998 89999999999976533 566777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 043068 128 KLIKAYGD----RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYTT 199 (526)
Q Consensus 128 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (526)
.|...|.. .+++++|+.+|++....+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~ 188 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 88888888 889999999999998765 47788888888887 789999999999999876 7889999
Q ss_pred HHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 200 MIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGL 271 (526)
Q Consensus 200 li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (526)
+...|.. .++.++|.++|++.-...+...+..+...|.. .+++++|.++|++..+.| +...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999998 89999999999987334567788888888887 899999999999998764 566777888888
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 272 CI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 272 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
.. .++.++|..+|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88 899999999999998764 456777888888887 89999999999999875 5677888888888
Q ss_pred hcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-
Q 043068 343 KIG---KSDEAISLLKEMRARGLKPTVFSFNAVFRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA- 414 (526)
Q Consensus 343 ~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~- 414 (526)
..| ++++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+-..+...
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 766 7899999999998874 67788889999998 899999999999998865 455666666665541
Q ss_pred --CCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 415 --KGRMQDVEDLVDRMIRSGHN-L-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 415 --~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.++.++|...|++..+.+.. | +......+...+. .+.+.+.+..++..++.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHH
Confidence 48999999999999998754 2 3344444444333 244555555555555543
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.1e-18 Score=171.61 Aligned_cols=368 Identities=11% Similarity=-0.006 Sum_probs=243.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Q 043068 92 TPCYTAITDVLLSHSLISIAASLLKNSN------------KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIEN----- 154 (526)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----- 154 (526)
...|+.++.++...|++++|.+.+++.. .....+|+.+...|...|++++|...++++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4468888888888999999888877532 12345788888899999999999998888754321
Q ss_pred -C-CChhhHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HcCChhhHHHHHHhC-CCC-CC
Q 043068 155 -G-ACLYSYNSLLGVLVRV--NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC---KMGMIENAKKVFDVM-TVK-PN 225 (526)
Q Consensus 155 -~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~-~~~-p~ 225 (526)
. ....++..+..++.+. +++++|++.|++.++.. |.+...+..+..++. ..++.++|++.+++. .+. .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1245566665555554 46889999999998876 667777776666543 457778888888765 323 34
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 043068 226 LLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKS 301 (526)
Q Consensus 226 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (526)
...+..+...+.. .|++++|.+.+++....... +..++..+...|...|++++|...++++.+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5566655555544 46778899999888876433 67778888889999999999999999988765 556667776
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068 302 MLKGLCVV-------------------GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362 (526)
Q Consensus 302 li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 362 (526)
+...|... +..+.|...+++..+.++. +..++..+...|...|++++|+..|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66665432 3356788888888776543 556688899999999999999999999988744
Q ss_pred CCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 043068 363 KPTVF--SFNAVFR-ILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTM 439 (526)
Q Consensus 363 ~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 439 (526)
.+... .+..+.. ...+.|+.++|+..|++..+ +.|+..... +....+.+++++.++.++. ++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~----------~~~~~l~~~~~~~l~~~p~-~~~~ 432 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE----------KMKDKLQKIAKMRLSKNGA-DSEA 432 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH----------HHHHHHHHHHHHHHHHCC--CTTH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH----------HHHHHHHHHHHHHHHhCCC-CHHH
Confidence 33221 2222222 23568999999999999887 446543222 2344556677777776544 7889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhhH
Q 043068 440 YSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
|..|..+|...|++++|++.|++.++.++..|+..+++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999888766553
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3.3e-19 Score=172.46 Aligned_cols=306 Identities=9% Similarity=-0.018 Sum_probs=174.1
Q ss_pred HHcCCCHHHHHH-HHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 133 YGDRGNVKAAIF-WFHQAKQIENG---ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 133 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
+...|++++|++ .|++....... .+...+..+...+.+.|++++|...|+++++.. |.+..++..+..++.+.|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence 445577888887 77765544321 134567778888888888888888888888776 677788888888888888
Q ss_pred ChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 209 MIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 209 ~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
++++|.+.|+++ . .+.+..++..+...+...|++++|++.|+++.+.... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 888888888776 2 2346677778888888888888888888888776322 11111111000 00
Q ss_pred HHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043068 287 MRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP-DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 365 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 365 (526)
.. .+ ...+..+.. +...|++++|...++++.+..+.. +..++..+...|...|++++|+..++++.+.. +.+
T Consensus 178 ~~----~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----GL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----cc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 00 000111112 225555555555555555543221 34555555556666666666666666555442 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC----------C
Q 043068 366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHN----------L 435 (526)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~----------p 435 (526)
...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++++..+. .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 4555566666666666666666666655422 12344455555554443 6666666666666554222 1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 436 DFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
...+|..+..+|.+.|++++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 26778888888888888888887776443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.3e-18 Score=168.19 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=186.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..+...|...|++++|+..|+++....+ .+..++..+...+.+.|++++|.+.|+++.+.. |.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSF 142 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 345566666677777777777777766553 345666677777777777777777777777665 55667777777777
Q ss_pred HHcCChhhHHHHHHhC-CCCCCH-HHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 043068 205 CKMGMIENAKKVFDVM-TVKPNL-LAYNT---------------MINGFCKKGELEEAKKCMNEMMNRGCRP-NELTYNA 266 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 266 (526)
...|++++|.+.++++ ...|+. ..+.. .+..+...|++++|+..|+++.+..... +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 7777777777777665 112211 11110 2333337788888888888888763321 4677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 267 MIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+. +..++..+...|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCC
Confidence 8888888888888888888887764 556778888888888888888888888888876533 67788888888888888
Q ss_pred hhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 347 SDEAISLLKEMRARGLKP----------TVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 347 ~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
+++|...|+++.+..... ...+|..+..+|...|+.++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 888888888876542110 15678888888888888888888776543
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.6e-18 Score=167.45 Aligned_cols=264 Identities=11% Similarity=-0.013 Sum_probs=205.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..+...+.+.|++++|+..|+++....+ .+..+|..+...+.+.|++++|++.|+++++.. |.+..++..+..+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAVSY 143 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 466777788888888888888888887664 467788888888888888888888888888876 67788888888888
Q ss_pred HHcCChhhHHHHHHhC-CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 043068 205 CKMGMIENAKKVFDVM-TVKPN-----------LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGL 271 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~ 271 (526)
...|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|++.|+++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 8888888888888876 22222 233445678888999999999999999887432 2578888999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043068 272 CINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAI 351 (526)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 351 (526)
.+.|++++|+..++++.+.. +.+..++..+...|.+.|++++|...|+++.+..+. +..++..+...|...|++++|+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999988765 567888999999999999999999999999887544 6888999999999999999999
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 352 SLLKEMRARGLK-----------PTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 352 ~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
..|+++.+.... .+...|..+..++...|+.+.+.++.++-.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999988764211 125678888888899999998888877643
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.8e-16 Score=157.42 Aligned_cols=371 Identities=9% Similarity=0.008 Sum_probs=194.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068 92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168 (526)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (526)
..+|..++.. .+.|++++|..++++.. +.+...|..++..+.+.|++++|..+|+++.... |++..|...+...
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHH
Confidence 3445555553 45566666666666543 2233455566666666666666666666665544 3444555444322
Q ss_pred -HhcCChhHHHH----HHHHHHHc-CCCCCCHHHHHHHHHHHHH---------cCChhhHHHHHHhCCCCCC---HHHHH
Q 043068 169 -VRVNSIKLAEE----FFHQIVKE-NVVPPDVSTYTTMIRGYCK---------MGMIENAKKVFDVMTVKPN---LLAYN 230 (526)
Q Consensus 169 -~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~p~---~~~~~ 230 (526)
...|+++.|.+ +|++.+.. |.-+++...|...+....+ .|++++|.++|++.-..|. ...|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455554443 45444432 2112345555555554443 4556666666665411222 12222
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc----CC
Q 043068 231 TMINGF-------------CKKGELEEAKKCMNEMM------NRG---CRPN--------ELTYNAMIYGLCIN----GR 276 (526)
Q Consensus 231 ~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~ 276 (526)
...... .+.++++.|..+++++. +.. +.|+ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 211110 12344555665555422 111 2232 12343333222221 12
Q ss_pred H----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 277 V----DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV-------VGKFD-------QAVGYLRNVMEANMNPDVKSYEVVI 338 (526)
Q Consensus 277 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li 338 (526)
. +++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 1 35566666666543 4556666666666654 56665 6777777766521222566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC
Q 043068 339 NGFCKIGKSDEAISLLKEMRARGLKPTV--FSFNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAK 415 (526)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~ 415 (526)
..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+.. |+ ...|...........
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHc
Confidence 7777777777777777777664 3332 356666666666777777777777766532 22 122221111111123
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
|+.++|..+|++.++..+. +...|..++..+.+.|+.++|..+|++.++.++..|
T Consensus 405 ~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred CChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 6777777777777665322 566777777777777777777777777777665443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=8.9e-18 Score=159.27 Aligned_cols=261 Identities=11% Similarity=0.006 Sum_probs=173.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (526)
.+...+...|++++|+.+|+++....+ .+...+..+...+...|++++|.+.|+++.+.. |.+..++..+...+...
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHc
Confidence 334444455555555555555544432 234445555555555555555555555555543 44555555555555555
Q ss_pred CChhhHHHHHHhC-CCCCC-HHHHH-------------HH-HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 208 GMIENAKKVFDVM-TVKPN-LLAYN-------------TM-IN-GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 208 g~~~~A~~~~~~~-~~~p~-~~~~~-------------~l-i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (526)
|++++|.+.++++ ...|+ ...+. .+ .. .+...|++++|.+.++++.+.... +...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 5555555555544 11111 11111 11 22 366778888899988888876433 67788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++..+...|...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHH
Confidence 888999999999998887765 556778888888888899999999999888877543 677888888888899999999
Q ss_pred HHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 351 ISLLKEMRARGLKP-----------TVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 351 ~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
.+.++++.+..... +...+..+..++.+.|+.++|..++++..+
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99998887653221 356788888888889999998888877654
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=5.7e-16 Score=157.49 Aligned_cols=395 Identities=9% Similarity=-0.001 Sum_probs=288.5
Q ss_pred HhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC--CCHHHHHHHHHH-HHcCCCH
Q 043068 63 YEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK--LSDFFISKLIKA-YGDRGNV 139 (526)
Q Consensus 63 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~g~~ 139 (526)
...|++++|...|+.++...| .+...|...+..+.+.|+++.|..+|++... ++...|..++.. ....|++
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFP------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKL 96 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTS
T ss_pred HHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccch
Confidence 558999999999999998765 3456799999999999999999999998764 344566655543 3356777
Q ss_pred HHHHH----HHHHHHhc-CCC-CChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 140 KAAIF----WFHQAKQI-ENG-ACLYSYNSLLGVLVR---------VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 140 ~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
++|.+ +|++.... |.. .+...|...+....+ .|+++.|..+|++.++.. .......|.......
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYE 175 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHH
Confidence 77665 77776543 332 346778887777665 689999999999998731 111124444333211
Q ss_pred -------------HHcCChhhHHHHHHh-------CC-----CCCC--------HHHHHHHHHHHHhc----CCH----H
Q 043068 205 -------------CKMGMIENAKKVFDV-------MT-----VKPN--------LLAYNTMINGFCKK----GEL----E 243 (526)
Q Consensus 205 -------------~~~g~~~~A~~~~~~-------~~-----~~p~--------~~~~~~li~~~~~~----g~~----~ 243 (526)
.+.++++.|..++.+ +. ++|+ ...|...+...... ++. +
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~ 255 (530)
T 2ooe_A 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK 255 (530)
T ss_dssp HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence 124567777776664 21 3444 24566555443322 232 4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc
Q 043068 244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCI-------NGRVD-------EAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV 309 (526)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (526)
++..+|++.+... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 7788999998863 3367888888888775 69977 8999999998632355788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 043068 310 GKFDQAVGYLRNVMEANMNPD-VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRI-LVENGELDRAIL 387 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~ 387 (526)
|++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 9999999999999986433 3 3589999999999999999999999998762 1223333332222 346899999999
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 388 LLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH-NL--DFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 388 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
+|+...+.. +.+...|..++..+.. .|+.++|..+|++.+..+. .| ....|...+....+.|+.+.+..+.+++.
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988742 2246777777777655 4999999999999998753 22 24589888998899999999999999999
Q ss_pred HcCCC
Q 043068 465 TKKGR 469 (526)
Q Consensus 465 ~~~~~ 469 (526)
+..+.
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 98874
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=5.9e-18 Score=163.55 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHH
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMIN 234 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~ 234 (526)
+...+..+...+.+.|++++|++.|+++++.. |.+..+|..+..++.+.|++++|.+.|+++ .. +.+...|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45568888889999999999999999999886 778889999999999999999999999887 22 345778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHH
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCR---------PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSML 303 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li 303 (526)
+|...|++++|++.|+++.+.... .....+..+...+.+.|++++|+.+++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 888999999999998888775211 001222334556666677777777777766553 22 456666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 043068 304 KGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELD 383 (526)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 383 (526)
..|.+.|++++|...++++.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666665433 55566666666666666666666666665542 123455556666666666666
Q ss_pred HHHHHHHHccc
Q 043068 384 RAILLLKQMPQ 394 (526)
Q Consensus 384 ~a~~~~~~~~~ 394 (526)
+|...|+++.+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.8e-16 Score=147.45 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=207.4
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 043068 101 VLLSHSLISIAASLLKNSNKLSDF----FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL 176 (526)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 176 (526)
-..-.|+++.|...+++....++. ....+.++|...|++++|+..++. . ..|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 344568888888888776555443 234577889999999999876654 2 23567788888888999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043068 177 AEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRG 256 (526)
Q Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 256 (526)
|++.+++++..+..|.+...+..+..++.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999999887652366778888888999999999999999988 5678888899999999999999999999998873
Q ss_pred CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043068 257 CRPNELTY---NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS 333 (526)
Q Consensus 257 ~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 333 (526)
|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..+. +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 453221 122333444588999999999998774 678888999999999999999999999998887654 7788
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 334 YEVVINGFCKIGKSDE-AISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 334 ~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
+..++..+...|+.++ +.++++++.+. .|+.. .+.....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~---~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP---FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh---HHHHHHHHHHHHHHHHHHc
Confidence 8888888888998865 56888888775 45542 2334455555666555433
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.2e-17 Score=156.57 Aligned_cols=260 Identities=8% Similarity=-0.031 Sum_probs=202.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR 170 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 170 (526)
.+..++..+...|++++|..++++.. +.+...+..+...|...|++++|.+.|+++....+ .+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 46677777788888888888777643 33455677788888888888888888888877653 457778888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHH--------------HH-HHHHcCChhhHHHHHHhC--CCCCCHHHHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTM--------------IR-GYCKMGMIENAKKVFDVM--TVKPNLLAYNTMI 233 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li 233 (526)
.|++++|.+.++++.+.. |.+...+..+ .. .+...|++++|.+.++++ ..+.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 888888888888888765 4444444333 33 367778889999988887 2234677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHH
Q 043068 234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFD 313 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (526)
..+.+.|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999887743 367788889999999999999999999988765 566788889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 314 QAVGYLRNVMEANMNP-----------DVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 314 ~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
+|.+.++++.+..... +...|..+..++.+.|++++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999988764332 46788899999999999999998887543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.5e-16 Score=148.07 Aligned_cols=274 Identities=11% Similarity=0.050 Sum_probs=216.6
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHH
Q 043068 61 VIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVK 140 (526)
Q Consensus 61 ~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 140 (526)
-....|+++.|+..++......|.+ .......+++++...|+++.|...++....++...+..+...+...|+.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~-----~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPER-----DVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHH-----HHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchh-----hHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 3445799999999998766544321 12345667899999999999999887764445557888999999999999
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHh
Q 043068 141 AAIFWFHQAKQIENGA-CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 141 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.|++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998765334 566777888999999999999999987 46889999999999999999999999999
Q ss_pred C-CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 220 M-TVKPNLLAY---NTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN 295 (526)
Q Consensus 220 ~-~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 295 (526)
+ ...|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..++++.+.. +.+
T Consensus 156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 8 334553221 22334455669999999999999988 34588899999999999999999999999998876 678
Q ss_pred HHhHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068 296 VSTHKSMLKGLCVVGKFDQ-AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISL 353 (526)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (526)
..++..++..+...|+.++ +.++++++.+.++. +.. +.+...+.+.++++..-
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHHH
Confidence 8899999999999999876 67899999987544 332 33344555555555443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-17 Score=158.75 Aligned_cols=293 Identities=13% Similarity=0.176 Sum_probs=139.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCC
Q 043068 58 VTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRG 137 (526)
Q Consensus 58 l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 137 (526)
+..++...|+.++|..++++.- .| .+|..++.++.+.|++++|.+.|.+. .++..|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~----~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN----EP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC----Ch-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence 3444556788999999999872 11 26899999999999999999999875 45558888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF 217 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 217 (526)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988877653 2567889999999999999999988874 357779999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 218 DVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVS 297 (526)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 297 (526)
..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.
T Consensus 146 ~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad 208 (449)
T 1b89_A 146 NNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 208 (449)
T ss_dssp HHT------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred HHh------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence 987 37999999999999999999999998 27899999999999999999996655542 23344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-RGLKP------TVFSFN 370 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~ 370 (526)
-...++..|.+.|++++|..+++..+... +-....|+-+...|++- ++++..+.++.-.. .+++| +...|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45578999999999999999999998776 44778888888888875 34444444433322 22333 456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q 043068 371 AVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~ 392 (526)
.+...|.+.++++.|....-+-
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhhchHHHHHHHHHhC
Confidence 8999999999999988755443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.2e-18 Score=164.07 Aligned_cols=285 Identities=14% Similarity=0.076 Sum_probs=134.0
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043068 101 VLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF 180 (526)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 180 (526)
++-+.|++++|.+.+++...+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.
T Consensus 12 ll~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344568899999999998543 58999999999999999999999753 5677999999999999999999997
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068 181 FHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN 260 (526)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (526)
++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 84 l~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 7766654 4567889999999999999999998886 478889999999999999999999999977
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING 340 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 340 (526)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHH
Confidence 37999999999999999999999988 37899999999999999999996655442 2344446679999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHcccCCCCc------CHHHHHHHHHHHH
Q 043068 341 FCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE--NGELDRAILLLKQMPQMDCLP------NFVSYNTIICGLC 412 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~ll~~~~ 412 (526)
|.+.|.+++|+.+++...... +-....|+.|..+|++ .+++.+.++.|..-.. ++| +...|.-+.-.|+
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988654 4456677777777765 3455555555554333 333 3556777877777
Q ss_pred hcCCCHHHHHHH
Q 043068 413 MAKGRMQDVEDL 424 (526)
Q Consensus 413 ~~~g~~~~a~~~ 424 (526)
.. ++++.|...
T Consensus 294 ~~-~e~d~A~~t 304 (449)
T 1b89_A 294 KY-EEYDNAIIT 304 (449)
T ss_dssp HT-TCHHHHHHH
T ss_pred hh-chHHHHHHH
Confidence 65 899988653
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.5e-16 Score=155.20 Aligned_cols=361 Identities=11% Similarity=-0.008 Sum_probs=246.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHhcCCCCCC---CCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC-----------C
Q 043068 55 SNIVTKVIYEQTNPYHALFFFNWASNPNPNP---NKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN-----------K 120 (526)
Q Consensus 55 ~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~ 120 (526)
.+.+..++..+|++++|++.|+.+.+..+.. ........+|..++.++...|++++|...+++.. .
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 3678888999999999999999886531100 0122345578999999999999999998887532 1
Q ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCCHH
Q 043068 121 LSDFFISKLIKAYGD--RGNVKAAIFWFHQAKQIENGACLYSYNSLLGV---LVRVNSIKLAEEFFHQIVKENVVPPDVS 195 (526)
Q Consensus 121 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 195 (526)
..+.++..+..++.. .+++++|++.|++.....+ .+...+..+..+ +...++.++|++.+++.++.. |.+..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~ 210 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQY 210 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchH
Confidence 234566666555554 4579999999999998774 345555555544 445688899999999999886 77888
Q ss_pred HHHHHHHHHHH----cCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068 196 TYTTMIRGYCK----MGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIY 269 (526)
Q Consensus 196 ~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (526)
++..+...+.. .|++++|.+.+++. ..+.+...+..+...|...|++++|+..|++..+.... +..++..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHH
Confidence 88877766655 46788999999886 22456778999999999999999999999999987433 5666776666
Q ss_pred HHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 043068 270 GLCIN-------------------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD 330 (526)
Q Consensus 270 ~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (526)
+|... +.+++|...+++..+.. +.+..++..+...|...|++++|+..|++..+....+.
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 55432 23567888888887765 56677889999999999999999999999998754432
Q ss_pred HH--HHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHH
Q 043068 331 VK--SYEVVIN-GFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI 407 (526)
Q Consensus 331 ~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 407 (526)
.. .+..+.. .+...|+.++|+..|++..+. .|+...... ..+.+.++++...+.. +.+..+|..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 21 2233332 345779999999999999876 455433222 2234445555555432 2345677777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068 408 ICGLCMAKGRMQDVEDLVDRMIRSGH 433 (526)
Q Consensus 408 l~~~~~~~g~~~~a~~~~~~~~~~~~ 433 (526)
-..+... |++++|.+.|++.++.+.
T Consensus 437 G~~~~~~-g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 437 AFLQELN-EKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHH-HHCC--------------
T ss_pred HHHHHHc-CCHHHHHHHHHHHHhcCC
Confidence 6666555 999999999999998764
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=177.59 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMN---RGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM 302 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (526)
..+|+++|++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44566666666666666666666655542 356666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 303 LKGLCVVGK-FDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 303 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666554433
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.1e-14 Score=150.87 Aligned_cols=356 Identities=10% Similarity=0.127 Sum_probs=184.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcC
Q 043068 57 IVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDR 136 (526)
Q Consensus 57 ~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 136 (526)
...+.+...|.+.+|+.+++.+.-. | ..|+.....-+.++....+. +.....+.+.+....+ ...+...+...
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~-~--s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLD-N--SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcC-C--CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 4566777899999999999999833 3 22333333334344444333 2233333333222111 22344455555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH
Q 043068 137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV 216 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 216 (526)
|.+++|..+|++.. ......+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555531 1111112221 1445555555555433 1234555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 043068 217 FDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV 296 (526)
Q Consensus 217 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 296 (526)
|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++.
T Consensus 1128 YiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1128 YIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 5543 244455555555555555555555555444432 22222223445555555544322221 1 2333
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------------
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR---------------- 360 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------- 360 (526)
..+..+...|...|++++|..+|... ..|..+...|++.|++++|++.+++....
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence 34444555555555555555555442 13445555555555555555444433211
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Q 043068 361 --------GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA-KGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 361 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~g~~~~a~~~~~~~~~~ 431 (526)
++..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...+++. .+++.++.++|..-+.
T Consensus 1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin- 1344 (1630)
T 1xi4_A 1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN- 1344 (1630)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 112245566788888999999999999998887643 22334454444444432 1344444444443321
Q ss_pred CCCC------CHHHHHHHHHHHHhCCCHHHHHH
Q 043068 432 GHNL------DFTMYSCLLKGYCEEGNVENVMQ 458 (526)
Q Consensus 432 ~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 458 (526)
+++ +...|..++-.|.+.|+++.|..
T Consensus 1345 -i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1345 -IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred -cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 222 56789999999999999999984
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=177.78 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMR---LNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEV 336 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (526)
-..||+++|++||+.|++++|.++|++|. +.|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 337 VINGFCKIGKS-DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 337 li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence 99999999985 78999999999999999999999999877664 444444554
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=3e-14 Score=150.90 Aligned_cols=352 Identities=14% Similarity=0.073 Sum_probs=263.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHH-HhCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 043068 55 SNIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVL-LSHSLISIAASLLKNSNKLSDFFISKLIKAY 133 (526)
Q Consensus 55 ~~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 133 (526)
...++.++...|.+++|..+|+.+.. +...+..+ -..+++++|.++.++. .++.+|..+..++
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~--------------~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV--------------NTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 45567777778999999999998631 12212223 3678899999998866 3477888999999
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068 134 GDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (526)
...|++++|++.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHH
Confidence 9999999999999764 467788889999999999999999999877654 3333444599999999998865
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 214 KKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK 293 (526)
Q Consensus 214 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (526)
..+.+ .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++.
T Consensus 1187 e~fI~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1187 EEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred HHHHh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 54432 557778888999999999999999999985 47999999999999999999999886
Q ss_pred CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 294 DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVF 373 (526)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 373 (526)
.+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 45688999999999999999998766543 2356677899999999999999999998877553 22444666666
Q ss_pred HHHHH--cCCHHHHHHHHHHcccCCCCc------CHHHHHHHHHHHHhcCCCHHHHHHHH-------------HHHHHCC
Q 043068 374 RILVE--NGELDRAILLLKQMPQMDCLP------NFVSYNTIICGLCMAKGRMQDVEDLV-------------DRMIRSG 432 (526)
Q Consensus 374 ~~~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~~g~~~~a~~~~-------------~~~~~~~ 432 (526)
..|++ -++..++.++|..-.. ++| +...|.-++-.|++. |+++.|.... +..+.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~-~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-- 1396 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY-EEYDNAIITMMNHPTDAWKEGQFKDIIT-- 1396 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhccHhhhhhHHHHHHhc--
Confidence 66654 4455566666654433 222 456688888777765 8999887322 22221
Q ss_pred CCCCHHHHHHHHHHHHhCC---------------CHHHHHHHHH
Q 043068 433 HNLDFTMYSCLLKGYCEEG---------------NVENVMQIAH 461 (526)
Q Consensus 433 ~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 461 (526)
...++..|...+.-|...+ +.+++.++|+
T Consensus 1397 kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 2336777777777776666 6777766665
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.5e-15 Score=136.05 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-------HHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-------VSTY 197 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~ 197 (526)
.+..+...+...|++++|+..|+++.... .+...+..+...+...|++++|++.+++..+.. |.+ ..++
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchHHHHHHH
Confidence 45556666666677777777777666655 556666666666777777777777766666543 111 3555
Q ss_pred HHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR 276 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (526)
..+...+.+.|++++|.+.|++. ...|+. ..+.+.|++++|...++++...... +...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 55555555666666665555554 222332 2233445555555555555543211 23344445555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
+++|...++++.+.. +.+..++..+...|.+.|++++|...+++..+..+. +...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555554433 334444555555555555555555555555444322 344444555555555555555555554
Q ss_pred HHH
Q 043068 357 MRA 359 (526)
Q Consensus 357 m~~ 359 (526)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6e-15 Score=134.50 Aligned_cols=227 Identities=10% Similarity=0.060 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHhH
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF--KDN----VSTH 299 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 299 (526)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888888999999999999999998887 6788889999999999999999999998876431 112 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN 379 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 379 (526)
..+...+...|++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 889999999999999999999998864 342 34667788999999999998762 22456788888999999
Q ss_pred CCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043068 380 GELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQI 459 (526)
Q Consensus 380 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 459 (526)
|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++++..+. +...|..+..+|.+.|++++|.+.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999988743 23466777777776665 9999999999999987544 688999999999999999999999
Q ss_pred HHHHHHcC
Q 043068 460 AHEMVTKK 467 (526)
Q Consensus 460 ~~~m~~~~ 467 (526)
+++.++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999887
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=7.3e-15 Score=130.41 Aligned_cols=207 Identities=15% Similarity=0.089 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
+..+..+...+.+.|++++|+..|++..+..+ .+...+..+...+.+.|++++|+..|++.++.. |.+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 34455566666667777777777776666553 446666666666777777777777777776665 556666666666
Q ss_pred HHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068 203 GYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 282 (526)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (526)
++.+.+.. ... .....|++++|+..|++..+.... +...+..+..++...|++++|+.
T Consensus 82 ~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYRQ------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHH
Confidence 66665100 000 001115555555555555544222 34445555555555555555555
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
.|+++.+.. .+...+..+...|...|++++|...|++..+..+. +...+..+...+...|++++|+..+++.
T Consensus 140 ~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555444 44455555555555555555555555555554332 4445555555555555555555555544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.1e-14 Score=129.38 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI 268 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (526)
|++...+..+...+.+.|++++|...|++. .. +.+...+..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 445556666666666666666666666664 22 234556666666666666666777666666665322 455666666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068 269 YGLCIN-----------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV 337 (526)
Q Consensus 269 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (526)
..+.+. |++++|+..+++..+.. +.+...+..+...+...|++++|+..|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 99999999999998875 5678899999999999999999999999999987 588999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 338 INGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
...|...|++++|+..|++..+.. +-+...+..+...+.+.|++++|++.+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999998863 23567888999999999999999999987654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=5.4e-15 Score=136.32 Aligned_cols=245 Identities=13% Similarity=-0.020 Sum_probs=156.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 135 DRGNVKAAIFWFHQAKQIENG---ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
..|++++|+..|+++...... .+..++..+...+...|++++|.+.|+++++.. |.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 456778888888877765321 235667777778888888888888888887775 667777888888888888888
Q ss_pred hHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 212 NAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 212 ~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
+|.+.|+++ .. +.+...+..+..++.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888877776 22 235667777777777888888888888877765 33433444444455666777777777776665
Q ss_pred cCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 290 NGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP---DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
.. +++...+ .++..+...++.++|...+++..+..... +..++..+...|...|++++|...|+++.+. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 43 3333333 35566666667777777777665432110 1355666667777777777777777777654 2322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 043068 367 FSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222244555666666666554
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=2.2e-14 Score=142.21 Aligned_cols=377 Identities=11% Similarity=0.012 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCH---HHHHHHHHhcCCCCHHHHHHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLI---SIAASLLKNSNKLSDFFISKLIKA 132 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~ 132 (526)
..+.....+.|++++|++.|+.+.+.+. ..++..++.++...|.. ++|..++++....++..+..|...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~--------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY--------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CTGGGTCC----------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567777889999999999999875431 12345566667667777 899999998776666666677775
Q ss_pred HHcCC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 133 YGDRG-----NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK---LAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 133 ~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
+...| ++++|+.+|++....+. ...+..|...|...+..+ .+.+.+......| +...+..|...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence 55555 78899999999887664 347777888888766543 4555566665555 345777788888
Q ss_pred HHcCChhhHHHH----HHhC-CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--
Q 043068 205 CKMGMIENAKKV----FDVM-TVKPNLLAYNTMINGFCKKG---ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN-- 274 (526)
Q Consensus 205 ~~~g~~~~A~~~----~~~~-~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 274 (526)
...+.++++... ++.. ...|+ .+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 888866555444 4433 22333 7788888888888 889999999998888744 555556666667554
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 043068 275 --GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG-L--CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG---- 345 (526)
Q Consensus 275 --g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 345 (526)
+++++|..+|++.. +.+...+..+... + ...+++++|..+|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 68899999998876 3455666667766 3 45788999999999888876 6677777777776 45
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCC
Q 043068 346 -KSDEAISLLKEMRARGLKPTVFSFNAVFRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA---KGR 417 (526)
Q Consensus 346 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~ 417 (526)
++++|++.|++.. .| +...+..|...|.. ..+.++|...|++..+.|. ++ ....+-..|... ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCC
Confidence 8889999988877 43 55666667666665 3488899999988887663 32 233333333321 247
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 418 MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 418 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
.++|..++++..+.|.. +.......+......++.++|.++.++..+.
T Consensus 374 ~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 88888888888887743 2222222222222334566677766665554
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=6.9e-14 Score=127.13 Aligned_cols=205 Identities=10% Similarity=0.010 Sum_probs=115.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 264 YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 233444444455555555555555555555444322 44455555555666
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHH
Q 043068 344 IGKSDEAISLLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVE 422 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~ 422 (526)
.|++++|++.++++.+.+..| +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+... |++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-REYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CCHHHHH
Confidence 666666666666655422223 33455556666666666666666666665532 12345555555555554 7777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
..++++++... .+...+..+...+.+.|++++|.+.++++.+..+..+..
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 77777776543 356677777777777788888888888877777655543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.3e-13 Score=122.03 Aligned_cols=225 Identities=6% Similarity=-0.069 Sum_probs=177.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI----NGRVDEAKMLMAKMRLNGFKDNVSTHK 300 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (526)
+..++..+...+...|++++|++.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45667777778888888888888888887732 45677777778888 888888888888887765 567777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 301 SMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK----IGKSDEAISLLKEMRARGLKPTVFSFNAV 372 (526)
Q Consensus 301 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 372 (526)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888888764 67778888888888 888888888888888765 55667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 373 FRILVE----NGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCM----AKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444 (526)
Q Consensus 373 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 444 (526)
...|.. .+++++|+..|++..+.+ +...+..+-..+.. . +++++|.+.+++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777877 888999999988888754 34555555555554 4 89999999999998865 367788888
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHcCC
Q 043068 445 KGYCE----EGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 445 ~~~~~----~g~~~~a~~~~~~m~~~~~ 468 (526)
..|.+ .|++++|.+.+++..+.++
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88988 8999999999999999887
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.1e-13 Score=125.81 Aligned_cols=197 Identities=14% Similarity=0.040 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG 203 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 203 (526)
..+..+...|...|++++|++.|+++....+ .+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 3556666677777777777777777766543 346666667777777777777777777776664 4566666666666
Q ss_pred HHHcCChhhHHHHHHhC-C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068 204 YCKMGMIENAKKVFDVM-T--VKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDE 279 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~~-~--~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (526)
+...|++++|.+.++++ . ..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666655 2 223 3345555556666666666666666665554321 34555555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 280 AKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555432 334444555555555555555555555555544
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.1e-14 Score=132.15 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=104.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (526)
.....+...|++++|+..|+++.+..+ .+...+..+...+...|++++|++.+++.++.. ++...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~----------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKA----------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTC-----------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhH-----------
Confidence 344445555555555555555544432 223344455555555555555555555554421 11100
Q ss_pred CChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 208 GMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 208 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
....|..+...+...|++++|++.|++..+.... +..++..+...|...|++++|...+++.
T Consensus 73 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 -----------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred -----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1222444444444444455555544444443221 3344444455555555555555555544
Q ss_pred HHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CC
Q 043068 288 RLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK---SDEAISLLKEMRARG-LK 363 (526)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~ 363 (526)
.+.. +.+...+..+...+...+++++|...++++.+..+. +...+..+...+...|+ +++|...+++..+.. -.
T Consensus 135 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 135 IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 4332 233344444442222333555555555555544322 34444444555555454 444555555443321 01
Q ss_pred CC------HHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 364 PT------VFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 364 p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
|+ ...|..+...|.+.|++++|.+.|+++.+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 12444445555555555555555555554
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.1e-13 Score=133.08 Aligned_cols=230 Identities=10% Similarity=0.074 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNS-IKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
..+..+...+...|++++|++.|+++....+ .+..+|+.+..++...|+ +++|+..|+++++.. |.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3566777778888888899998888887774 457788888888888886 899999998888876 778888888888
Q ss_pred HHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHH
Q 043068 203 GYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCI-NGRVDE 279 (526)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 279 (526)
++.+.|++++|+..|+++ .+ +.+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888887 22 346778888888888888888888888888887544 67778888888877 555466
Q ss_pred H-----HHHHHHHHHcCCCCCHHhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------
Q 043068 280 A-----KMLMAKMRLNGFKDNVSTHKSMLKGLCVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG------- 345 (526)
Q Consensus 280 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 345 (526)
| +..|+++.+.. +.+...|..+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 46677776654 455667777777777766 567777777766 332 235666777777776653
Q ss_pred --ChhHHHHHHHHH-HHC
Q 043068 346 --KSDEAISLLKEM-RAR 360 (526)
Q Consensus 346 --~~~~A~~~~~~m-~~~ 360 (526)
..++|+++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 246777777776 443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.5e-14 Score=131.66 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLK 304 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 304 (526)
..+......+...|++++|+..|++..+.... +...+..+...+...|++++|+..++++.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556677788889999999999888876432 455777788888889999999999988887331111 234788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 384 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 384 (526)
.+...|++++|...+++..+..+. +..++..+...|...|++++|++.+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988887544 66788888899999999999999998887762 2345666666634455569999
Q ss_pred HHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhCCCH
Q 043068 385 AILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR---MQDVEDLVDRMIRSG-HNLD------FTMYSCLLKGYCEEGNV 453 (526)
Q Consensus 385 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~ 453 (526)
|.+.|+++.+. .|+ ...+..+...+... |+ .++|...++++++.. ..|+ ..+|..+...|.+.|++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999988874 344 44555555555444 66 777888888877642 1122 25788899999999999
Q ss_pred HHHHHHHHHHHHcCCCccchhhhH
Q 043068 454 ENVMQIAHEMVTKKGRLLKLKNFL 477 (526)
Q Consensus 454 ~~a~~~~~~m~~~~~~~~~~~~~~ 477 (526)
++|.+.+++.++.++..+.....+
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHh
Confidence 999999999999998777655443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.2e-13 Score=121.23 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 043068 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGF 236 (526)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~ 236 (526)
..+..+...+...|++++|.+.|+++.+.. |.+..++..+...+...|++++|.+.++++ . .+.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 334444444444555555555555444443 334444444444444445554444444443 1 122334444455555
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 237 CKK-GELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 237 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555544211222 3444445555555555555555555554433 2334445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
|...++++.+..+..+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555443212444444445555555555555555555543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.5e-13 Score=120.80 Aligned_cols=210 Identities=10% Similarity=-0.003 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 261 ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVING 340 (526)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 340 (526)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3445555555556666666666666555543 334555566666666666666666666666655332 45566666666
Q ss_pred HHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH
Q 043068 341 FCKI-GKSDEAISLLKEMRARGLKPT-VFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM 418 (526)
Q Consensus 341 ~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~ 418 (526)
+... |++++|+..++++.+.+..|+ ...+..+..++...|++++|.+.++++.+.. +.+...+..+...+... |++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CCH
Confidence 6666 777777777766665222232 4556666667777777777777777766532 12345555555555554 778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 419 QDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
++|...++++++..+..+...+..+...+...|+.++|..+++.+.+..+..+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 88888777777754423666677777777778888888888888777776555443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3e-14 Score=128.68 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG 203 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 203 (526)
..+..+...+...|++++|+..|+++....+ .+...+..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHH
Confidence 3455566666666777777777776665443 345666666666777777777777777766654 4556666666666
Q ss_pred HHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068 204 YCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK 281 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (526)
+...|++++|.+.++++ ..+.+...+..+...+.+.|++++|.+.++++.+... .+...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654 1123445555556666666666666666666555422 24445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 282 MLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
..++++.+.. +.+..++..+...|.+.|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555555443 334445555555555555555555555555554
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.1e-13 Score=133.01 Aligned_cols=237 Identities=10% Similarity=0.053 Sum_probs=194.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hhhHHHHHHhC-CC-CCCHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM-IENAKKVFDVM-TV-KPNLLAYNTMIN 234 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~-~~-~p~~~~~~~li~ 234 (526)
..+|..+..++.+.|++++|++.|+++++.. |.+..+|+.+..++.+.|+ +++|++.|+++ .. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5567788888999999999999999999987 8889999999999999996 99999999987 32 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH-cCCHH
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV-VGKFD 313 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 313 (526)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999987544 78889999999999999999999999998876 6678889999999988 56657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 043068 314 QA-----VGYLRNVMEANMNPDVKSYEVVINGFCKIG--KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG------ 380 (526)
Q Consensus 314 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 380 (526)
+| +..+++.++..+. +...|+.+...+...| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 4788888887655 6778888888888877 588888888887 33 2335667788888887764
Q ss_pred ---CHHHHHHHHHHc-ccCCCCcCHHH
Q 043068 381 ---ELDRAILLLKQM-PQMDCLPNFVS 403 (526)
Q Consensus 381 ---~~~~a~~~~~~~-~~~~~~p~~~~ 403 (526)
..++|+++++++ .+ +.|...-
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHH
Confidence 257888888888 55 3355443
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=8.3e-14 Score=138.05 Aligned_cols=349 Identities=11% Similarity=0.009 Sum_probs=238.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 043068 96 TAITDVLLSHSLISIAASLLKNSNKL-SDFFISKLIKAYGDRGNV---KAAIFWFHQAKQIENGACLYSYNSLLGVLVRV 171 (526)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 171 (526)
..++..+.+.|++++|..++++.... ++..+..|...|...|++ ++|+.+|++.... +...+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 34677888899999999999865322 233445566666777888 9999999998754 566677777756665
Q ss_pred C-----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh---HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043068 172 N-----SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN---AKKVFDVMTVKPNLLAYNTMINGFCKKGELE 243 (526)
Q Consensus 172 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 243 (526)
+ ++++|.+.|++..+.| .++ .+..|...|...+..++ +.+.+.......+...+..+...|...+.++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 5 7889999999999987 333 77788888887766444 4444444321224556777888888888666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc----CCHHHHH
Q 043068 244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCING---RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV----GKFDQAV 316 (526)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~ 316 (526)
++......+.+.-...++..+..|...|.+.| +.++|+.+|++..+.| +++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 66555444433322224448888888999999 9999999999999988 66776667788888655 7999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHH
Q 043068 317 GYLRNVMEANMNPDVKSYEVVING-F--CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENG-----ELDRAILL 388 (526)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~ 388 (526)
.+|++.. .| +...+..+... | ...+++++|++.|++..+.| +...+..|...|. .| ++++|++.
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999988 43 55667777766 4 56899999999999999876 6667777777777 55 99999999
Q ss_pred HHHcccCCCCcCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 043068 389 LKQMPQMDCLPNFVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCE----EGNVENVMQIAH 461 (526)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 461 (526)
|++.. .| +......+-..|... ..+.++|..++++..+.|. ......|...|.. ..+.++|...|+
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99988 43 445555555444331 1399999999999998774 4456677777764 468999999999
Q ss_pred HHHHcCC
Q 043068 462 EMVTKKG 468 (526)
Q Consensus 462 ~m~~~~~ 468 (526)
+..+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9999885
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.2e-12 Score=120.60 Aligned_cols=222 Identities=9% Similarity=-0.053 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 043068 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVR----VNSIKLAEEFFHQIVKENVVPPDVSTYT 198 (526)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 198 (526)
+..+..+...|...|++++|+++|++..+. .+..++..+...+.. .+++++|.+.|++..+.+ +..++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 334455556666666666666666666552 234555566666666 666666666666666554 455666
Q ss_pred HHHHHHHH----cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 199 TMIRGYCK----MGMIENAKKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 199 ~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (526)
.+...|.. .+++++|.+.|++.-...+...+..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 66666666666654111245555566666665 666666666666666543 34455555555
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 271 LCI----NGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV----VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 271 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 555 566666666666655543 33445555555555 566666666666655543 2444555555555
Q ss_pred h----cCChhHHHHHHHHHHHC
Q 043068 343 K----IGKSDEAISLLKEMRAR 360 (526)
Q Consensus 343 ~----~g~~~~A~~~~~~m~~~ 360 (526)
. .+++++|++.|++..+.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHc
Confidence 5 55666666666555544
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=7.2e-14 Score=126.13 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=124.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHH
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMIN 234 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~ 234 (526)
....|..+...+...|++++|...|+++.+.. |.+..++..+...+.+.|++++|.+.++++ . .+.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34566667777777888888888888887765 667777777777777788888887777765 1 1335666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
.+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777776532 256666677777777777777777777776654 4456666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
|...++++.+.... +..++..+...|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776665432 5566666777777777777777777776654
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.8e-14 Score=129.37 Aligned_cols=224 Identities=13% Similarity=-0.045 Sum_probs=133.6
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 239 KGELEEAKKCMNEMMNRGCR---PNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666677777666654221 124455666666666777777777777666554 44566666666777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC
Q 043068 316 VGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM 395 (526)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 395 (526)
...++++.+..+. +..++..+...|...|++++|+..++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777766665433 4556666667777777777777777776654 344333334444445567777777777665543
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 396 DCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL---DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 396 ~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
. .++...+. +...+.. .++.++|...++++.+..... +..++..+..+|.+.|++++|...++++++.++.
T Consensus 174 ~-~~~~~~~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp S-CCCSTHHH-HHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred C-CcchHHHH-HHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 2 12222222 3333333 366667777776665432210 1456677777777777777777777777776653
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.4e-14 Score=137.36 Aligned_cols=267 Identities=14% Similarity=0.094 Sum_probs=163.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACL----YSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTYT 198 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 198 (526)
..+...+...|++++|+..|+++....+ .+. ..+..+...+...|++++|++.|++.++. +..+....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3456667777788888887777776653 222 46677777777778888887777776543 10123445677
Q ss_pred HHHHHHHHcCChhhHHHHHHhC-------CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 043068 199 TMIRGYCKMGMIENAKKVFDVM-------TVK-PNLLAYNTMINGFCKKGE-----------------LEEAKKCMNEMM 253 (526)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~ 253 (526)
.+...|...|++++|.+.+++. +.. .....+..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7777777777777777777665 111 123456677777777777 777777776654
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 254 NR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK-DN----VSTHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 254 ~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
+. +..+ ...++..+...|...|++++|+..+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1111 1235666677777777777777777776542100 11 2256666777777777777777777665
Q ss_pred HcCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 324 EANMN-----PDVKSYEVVINGFCKIGKSDEAISLLKEMRARG----LK-PTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 324 ~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
+.... ....++..+...|...|++++|...+++..+.. .. ....++..+...|.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43111 013456666677777777777777777665421 00 012355566666667777777777766665
Q ss_pred c
Q 043068 394 Q 394 (526)
Q Consensus 394 ~ 394 (526)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 5
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.4e-13 Score=134.56 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=109.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTY 197 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 197 (526)
+..+...+...|++++|+..|+++....+ .+ ..++..+...+...|++++|...+++..+. +..+....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34445555566666666666666655442 12 234555566666666666666666654432 1001123445
Q ss_pred HHHHHHHHHcCChhhHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVM-TV---KPN----LLAYNTMINGFCKKGE--------------------LEEAKKCM 249 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 249 (526)
..+...+...|++++|...+++. .. .++ ..++..+...+...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55556666666666666655544 00 011 2245555555555666 55555555
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHHcCCHHHHHHHH
Q 043068 250 NEMMNR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-KDN----VSTHKSMLKGLCVVGKFDQAVGYL 319 (526)
Q Consensus 250 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~ 319 (526)
++..+. +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 554332 1000 122344555555555555555555555432200 001 124444455555555555555555
Q ss_pred HHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 320 RNVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 320 ~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
++..+.... .+ ..++..+...|...|++++|...+++.
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 544432100 00 223444444444555555555544444
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=2e-13 Score=133.34 Aligned_cols=296 Identities=12% Similarity=0.048 Sum_probs=212.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCC
Q 043068 156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKP 224 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p 224 (526)
.....+......+...|++++|...|+++++.+ +.+ ..++..+...+...|++++|...+++. +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566778888999999999999999999876 445 367888999999999999999998875 2122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HH
Q 043068 225 -NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN----ELTYNAMIYGLCINGR--------------------VD 278 (526)
Q Consensus 225 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~ 278 (526)
....+..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457888889999999999999999988664110 12 3467888888999999 99
Q ss_pred HHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChh
Q 043068 279 EAKMLMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM-NPD----VKSYEVVINGFCKIGKSD 348 (526)
Q Consensus 279 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 348 (526)
+|...+++..+. +. +....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877542 11 11234677888889999999999999988775311 112 236788888899999999
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCCCH
Q 043068 349 EAISLLKEMRAR----GLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQM----DCLPN-FVSYNTIICGLCMAKGRM 418 (526)
Q Consensus 349 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~g~~ 418 (526)
+|+..+++..+. +..+ ...++..+...|...|++++|.+.+++..+. +-.+. ...+..+...+... |++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCH
Confidence 999999887643 1111 1456778888888999999999988887652 11111 33455555555554 888
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhCCCHH
Q 043068 419 QDVEDLVDRMIRS----GHN-LDFTMYSCLLKGYCEEGNVE 454 (526)
Q Consensus 419 ~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~ 454 (526)
++|.+.+++.++. +.. ....++..+...+...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8888888887653 111 12456677777777777653
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=7.5e-14 Score=132.35 Aligned_cols=266 Identities=14% Similarity=0.116 Sum_probs=135.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCCHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE----NVVPPDVSTYT 198 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 198 (526)
......+...|++++|+..|+++....+ .+ ...+..+...+...|++++|.+.+++..+. +..+....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3445566677777777777777766543 22 345666777777777777777777765432 10112244566
Q ss_pred HHHHHHHHcCChhhHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 043068 199 TMIRGYCKMGMIENAKKVFDVM----TVKPN----LLAYNTMINGFCKKGE--------------------LEEAKKCMN 250 (526)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 250 (526)
.+...+...|++++|.+.+++. ...++ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6666677777777777666654 10111 2355566666666666 666666665
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHH
Q 043068 251 EMMNR----GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLR 320 (526)
Q Consensus 251 ~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (526)
+.... +..+ ...++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54332 1010 1234555555566666666666666655432 10 0011244445555555555555555555
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043068 321 NVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEMRARG----LK-PTVFSFNAVFRILVENGELDRAILLLK 390 (526)
Q Consensus 321 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (526)
+..+.... .+ ..++..+...|...|++++|...+++..+.. .. ....++..+...|.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54432100 01 2334444455555555555555555443220 00 001233344444444445554444444
Q ss_pred Hcc
Q 043068 391 QMP 393 (526)
Q Consensus 391 ~~~ 393 (526)
+..
T Consensus 328 ~a~ 330 (338)
T 3ro2_A 328 KHL 330 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.7e-13 Score=134.28 Aligned_cols=276 Identities=11% Similarity=0.067 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHhC-------C-CCCCH
Q 043068 159 YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTTMIRGYCKMGMIENAKKVFDVM-------T-VKPNL 226 (526)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 226 (526)
..+..+...+...|++++|+..|+++++.+ +.+. .++..+...|...|++++|.+.+++. + .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778889999999999999999876 4454 57888889999999999999988775 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNR----GC-RPNELTYNAMIYGLCINGR-----------------VDEAKMLM 284 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~ 284 (526)
..+..+...|...|++++|...|++..+. +- .....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56778888888888988888888877653 11 1123456667777777777 66666666
Q ss_pred HHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 285 AKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 285 ~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
++..+. +. .....++..+...|...|++++|...+++..+.... .+..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 260 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA-------------------------- 260 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence 655321 10 111224444555555555555555555554432100 0100
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCC-cCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Q 043068 359 ARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM----DCL-PNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH 433 (526)
Q Consensus 359 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~ 433 (526)
.....+..+...|...|++++|.+.+++..+. +.. .....+..+...+... |++++|...+++.++...
T Consensus 261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 00113444444455555555555555444331 000 0123333444444333 666666666665554210
Q ss_pred -----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 434 -----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 434 -----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.....++..+..+|.+.|++++|.+.+++.++...
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11134667777788888888888888888877765
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=6.5e-12 Score=117.86 Aligned_cols=214 Identities=10% Similarity=0.064 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------cCCh-------hhHHHHHHhC-C-CCC-CHHHHHHHHHHHH
Q 043068 175 KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK-------MGMI-------ENAKKVFDVM-T-VKP-NLLAYNTMINGFC 237 (526)
Q Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~-~-~~p-~~~~~~~li~~~~ 237 (526)
++|..+|++.++.. |.+...|..++..+.. .|++ ++|..+|++. . +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56777777777764 6677777777766653 3554 5666666654 3 333 3345566666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-HcCCHHH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPN-EL-TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC-VVGKFDQ 314 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 314 (526)
+.|++++|.++|++.++. .|+ .. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666553 222 22 55555555566666666666666655443 223333332222211 1355555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG-LKP--TVFSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
|..+|++..+..+. +...|..++..+.+.|++++|+.+|++..... +.| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555544322 44455555555555555555555555555431 222 233444444444455555555555555
Q ss_pred ccc
Q 043068 392 MPQ 394 (526)
Q Consensus 392 ~~~ 394 (526)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=5.3e-13 Score=133.11 Aligned_cols=211 Identities=9% Similarity=-0.019 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 043068 139 VKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI-KLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF 217 (526)
Q Consensus 139 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 217 (526)
++++++.+++...... .+...+..+...+...|++ ++|++.|++.++.. |.+..+|..+..+|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666665554332 4566777777777777777 77777777777765 566777777777777777777777777
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 043068 218 DVM-TVKPNLLAYNTMINGFCKK---------GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN--------GRVDE 279 (526)
Q Consensus 218 ~~~-~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~ 279 (526)
++. ...|+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 775 5556666677777777777 7777777777777766322 566667777777666 66777
Q ss_pred HHHHHHHHHHcCCC---CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043068 280 AKMLMAKMRLNGFK---DNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLK 355 (526)
Q Consensus 280 a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (526)
|+..|+++.+.. + .+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|++.+.
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777766653 3 45666666777777777777777777776665433 45566666666666666666665443
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=7.7e-13 Score=125.32 Aligned_cols=275 Identities=13% Similarity=0.061 Sum_probs=156.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCC-CHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKP-NLL 227 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 227 (526)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34455677888899999999999988875 445 467778888888889999888888775 1111 244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGR--------------------VDEAKM 282 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~ 282 (526)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 677777888888888888888877655311 112 2356666677777777 666666
Q ss_pred HHHHHHHc----CC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 283 LMAKMRLN----GF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-PDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 283 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
.+++..+. +. +....++..+...+...|++++|...+++..+.... ++.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------- 219 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh-------------------------
Confidence 66655321 10 111224444555555555555555555544332000 000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 357 MRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQM----DCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 357 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
.....++..+...+...|++++|...+++..+. +..+. ...+..+...+... |++++|...++++++.
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 001123444444555555555555555544321 10000 22333344444333 6666666666655542
Q ss_pred CC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 432 GH-----NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 432 ~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.. .....++..+...|.+.|++++|.+.+++.++...
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11 11134666777778888888888888887777654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=1.1e-10 Score=119.67 Aligned_cols=405 Identities=11% Similarity=0.033 Sum_probs=254.7
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCC---HHHHHHHHHhcCC-----CCHHHHHHHH
Q 043068 59 TKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSL---ISIAASLLKNSNK-----LSDFFISKLI 130 (526)
Q Consensus 59 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-----~~~~~~~~li 130 (526)
+..+...++.+.|..+|++++...| .....|...++.-.+.+. ++.+..+|+++.. ++...|...+
T Consensus 73 i~~~~~~~~~~~aR~vyEraL~~fP------~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 73 LKHHVSLKQWKQVYETFDKLHDRFP------LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3444446677777777777776543 334457777777777777 7777777776542 4455666555
Q ss_pred HHHHcCCCH--------HHHHHHHHHHHh-cCC-CC-ChhhHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCC
Q 043068 131 KAYGDRGNV--------KAAIFWFHQAKQ-IEN-GA-CLYSYNSLLGVLVR---------VNSIKLAEEFFHQIVKENVV 190 (526)
Q Consensus 131 ~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~ 190 (526)
....+.++. +...++|+.+.. .|. .+ +...|...+..... .++++.+.++|++++..
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i--- 223 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ--- 223 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---
Confidence 544444332 334466766553 233 23 24566666655432 23456677777777642
Q ss_pred CCC--HHHHHHHHHHHHHcC-------------ChhhHHHHHHhC-----CC----C-----------C-----C---HH
Q 043068 191 PPD--VSTYTTMIRGYCKMG-------------MIENAKKVFDVM-----TV----K-----------P-----N---LL 227 (526)
Q Consensus 191 ~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~~-----~~----~-----------p-----~---~~ 227 (526)
|.. ..+|......--..+ +++.|...+.++ ++ + | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 222 233332222111111 122333334331 10 0 1 0 13
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHhH
Q 043068 228 AYNTMINGFCKKG-------ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAK-MLMAKMRLNGFKDNVSTH 299 (526)
Q Consensus 228 ~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~ 299 (526)
.|...+..--..+ ..+.+..+|++.+..- .-....|...+..+...|+.++|. .+|++.... ++.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 3444444322222 1234556777777652 336777777777788889988996 999999864 35667778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVMEAN---------MNPD------------VKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
...+...-+.|++++|.++|+++.+.. ..|+ ...|...+....+.|+.+.|.++|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999999999988641 0132 3468888888888999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--
Q 043068 359 ARGLKPTVFSFNAVFRILVEN-GELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL-- 435 (526)
Q Consensus 359 ~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p-- 435 (526)
+.-.......|...+..-.+. ++.+.|.++|+...+. +.-+...+...+...... |+.+.|..+|++.+.....+
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~-~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV-NEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCHHH
Confidence 761111233443333333344 4589999999998874 233455556666655554 99999999999998865422
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 436 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
....|...+..-.+.|+.+.+.++.+++.+..+..+.+..|
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 34688888888899999999999999999999977665555
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.1e-11 Score=116.24 Aligned_cols=216 Identities=8% Similarity=0.025 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHH-cCCCCCCHHHHHHHHHHH
Q 043068 140 KAAIFWFHQAKQIENGACLYSYNSLLGVLV-------RVNSI-------KLAEEFFHQIVK-ENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~ 204 (526)
++|+.+|+++....+ .+...|..++..+. +.|++ ++|..+|++.++ .. |.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 678889998887664 56778888777765 35776 899999999988 34 66778899999999
Q ss_pred HHcCChhhHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 043068 205 CKMGMIENAKKVFDVM-TVKPN-LL-AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC-INGRVDEA 280 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a 280 (526)
.+.|++++|.++|++. ...|+ .. .|..++..+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999987 55554 33 788899999999999999999999988643 34455554433322 36999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 281 KMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN-MNP--DVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
..+|+++.+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988764 5578889999999999999999999999999863 233 5678888999999999999999999998
Q ss_pred HHC
Q 043068 358 RAR 360 (526)
Q Consensus 358 ~~~ 360 (526)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.7e-12 Score=126.02 Aligned_cols=233 Identities=9% Similarity=-0.019 Sum_probs=154.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC----CCCHHhHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN--GF----KDNVSTHK 300 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 300 (526)
....+...|++++|+..|++..+.-. .++ ..++..+...|...|++++|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45556667777777777777765310 112 345667777777777777777777776542 11 11134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 043068 301 SMLKGLCVVGKFDQAVGYLRNVMEANMN-PD----VKSYEVVINGFCKIGKSDEAISLLKEMRAR----GL-KPTVFSFN 370 (526)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 370 (526)
.+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777653111 11 236777888888889999888888887662 22 22355778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcccCC---CCcCH-HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 043068 371 AVFRILVENGELDRAILLLKQMPQMD---CLPNF-VSYNTIICGLCMAKGR---MQDVEDLVDRMIRSGHNL-DFTMYSC 442 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~-~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~ 442 (526)
.+...+.+.|++++|.+.+++..+.. -.|.. ..+.. +..+....|+ +++|..++++. +..| ....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 88888889999999999888876521 01222 22334 3344444577 67777777665 3333 3347778
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 443 LLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 443 l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+...|.+.|++++|...+++.++...
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999877544
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.5e-12 Score=108.51 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
+...|..+...|.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556666666666666666666666666665332 45566666666666667766666666665544 445555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDR 384 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 384 (526)
.+...++++.|...+.+..+..+. +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666676666666666665433 55666666666666777777777776666542 2245566666666667777777
Q ss_pred HHHHHHHccc
Q 043068 385 AILLLKQMPQ 394 (526)
Q Consensus 385 a~~~~~~~~~ 394 (526)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766665
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=8.9e-12 Score=107.18 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMING 235 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~ 235 (526)
..+|..+...+.+.|++++|++.|++.++.. |.+..++..+..+|.+.|++++|.+.++.. ..+.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3344444444444444444444444444443 344444444444444444444444444433 111223333334444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
+...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..++..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44444444444444444433211 33334444444444444444444444444332 23333444444444444444444
Q ss_pred HHHHHHHHH
Q 043068 316 VGYLRNVME 324 (526)
Q Consensus 316 ~~~~~~~~~ 324 (526)
.+.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=7.1e-12 Score=121.60 Aligned_cols=291 Identities=11% Similarity=-0.011 Sum_probs=192.8
Q ss_pred HcCCCHHHHHHHHHHHHhcC--CCCC--hhhHHHHHHH--HHhcCChhHHH-----------HHHHHHHHcCCCCCCHH-
Q 043068 134 GDRGNVKAAIFWFHQAKQIE--NGAC--LYSYNSLLGV--LVRVNSIKLAE-----------EFFHQIVKENVVPPDVS- 195 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~- 195 (526)
.+.+++++|..+++++...- ...+ ...|-.++.. ..-.+.++.+. +.++.+.... .+..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCchh
Confidence 45778888888887775432 1122 2333333322 11223444444 6666654432 1212
Q ss_pred -----HHHHHHHHHHHcCChhhHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 043068 196 -----TYTTMIRGYCKMGMIENAKKVFDVM-TV---KP----NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-P-- 259 (526)
Q Consensus 196 -----~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-- 259 (526)
.+......+...|++++|.+.|++. .. .+ ...++..+...|...|++++|+..+++..+.-.. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 2223666778889999999988876 21 12 2357888888999999999999999887664111 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC
Q 043068 260 ---NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRNVME-----AN 326 (526)
Q Consensus 260 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~ 326 (526)
...++..+...|...|++++|+..+++..+. +.. ....++..+...|...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1356778888899999999999999887643 111 1124778889999999999999999998877 22
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcccCCCCc
Q 043068 327 MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR----GLKPTVFSFNAVFRILVENGE---LDRAILLLKQMPQMDCLP 399 (526)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p 399 (526)
......++..+...|.+.|++++|...+++..+. +.......+..+...+...|+ +++|+.++++.. ..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence 1334667888899999999999999999887653 111122335667777888888 888888888773 234
Q ss_pred CHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 043068 400 NFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRS 431 (526)
Q Consensus 400 ~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 431 (526)
+.. .+..+...+. ..|++++|.+.+++.++.
T Consensus 337 ~~~~~~~~la~~y~-~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 337 DLEDFAIDVAKYYH-ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 433 3444444444 459999999999988753
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.6e-12 Score=128.17 Aligned_cols=216 Identities=9% Similarity=-0.003 Sum_probs=182.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-hhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI-ENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
+.++++++.+++..... +.+...+..+...+...|++ ++|++.|++. ...| +...|..+..+|.+.|++++|++.
T Consensus 82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34667778888776654 67899999999999999999 9999999987 3333 578899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc--------CC
Q 043068 249 MNEMMNRGCRPNELTYNAMIYGLCIN---------GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV--------GK 311 (526)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~ 311 (526)
|++..+. .|+...+..+...+... |++++|+..++++.+.. +.+...+..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999987 56778888999999998 99999999999998875 66788899999999988 99
Q ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMN--PDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLL 389 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (526)
+++|+..|++..+..+. -+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|++.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987541 378889999999999999999999999988763 224567888888899999999998876
Q ss_pred HHcc
Q 043068 390 KQMP 393 (526)
Q Consensus 390 ~~~~ 393 (526)
.++.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 6553
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=122.71 Aligned_cols=242 Identities=11% Similarity=0.029 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNR-------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN------G- 291 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~- 291 (526)
..++..+...+...|++++|..+|+++.+. ........+..+...|...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445556666666666666666666665542 11222344555666666666666666666665442 1
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 043068 292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA------NM-NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR---- 360 (526)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 360 (526)
.+....++..+...|...|++++|...+++..+. +. ......+..+...|...|++++|++.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223445566666666677777777666666543 11 112345666677777777777777777776543
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-------CCCcCHHHHHHHHHHHHh------cCCCHHHHHHH
Q 043068 361 --GLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQM-------DCLPNFVSYNTIICGLCM------AKGRMQDVEDL 424 (526)
Q Consensus 361 --~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~------~~g~~~~a~~~ 424 (526)
+..| ...++..+...|...|++++|.+.++++.+. ...+...........+.. ..+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2345666777777777777777777776641 111111111111111111 12455556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 425 VDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 425 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
++...... +.+..++..+..+|.+.|++++|.+.+++.++..+
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 66665432 23567889999999999999999999999887543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=125.72 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQI-------ENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE------NVVP 191 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~ 191 (526)
.+..+...|...|++++|+.+|+++... .......++..+...+...|++++|.+.+++.++. +..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455556666666666666666665542 11123455666666666677777777666666543 1112
Q ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 043068 192 PDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV---------KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR------ 255 (526)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 255 (526)
....++..+...+...|++++|.+.+++. .. ......+..+...+...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23455666666666666666666666554 10 112335566666666777777777777666553
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 256 GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 256 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
+..| ...++..+...|...|++++|...++++.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 233456666666677777777777666653
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=2.5e-10 Score=110.17 Aligned_cols=161 Identities=11% Similarity=0.005 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHH
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACL----YSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTT 199 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~ 199 (526)
.+...+...|++++|...+++........+. .+++.+...+...|++++|.+.+++......-..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344555677777777777776654422222 134555566666777777777776665421001111 22445
Q ss_pred HHHHHHHcCChhhHHHHHHhC-------CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 043068 200 MIRGYCKMGMIENAKKVFDVM-------TVK--P-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP----NELTYN 265 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~-------~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~ 265 (526)
+...+...|++++|.+.+++. +.. | ....+..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 555566666666666655543 111 1 12234445555556666666666666554432110 123344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
.+...+...|++++|...+++..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555555554
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=2.7e-10 Score=109.88 Aligned_cols=297 Identities=13% Similarity=0.106 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC-H----HHHHHHHHHHHHcCChhhHHHHHHhC----CCCCC----HH
Q 043068 161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD-V----STYTTMIRGYCKMGMIENAKKVFDVM----TVKPN----LL 227 (526)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 227 (526)
.......+...|++++|...+++..... +++ . .+++.+...+...|++++|.+.+++. ...++ ..
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3344556777899999999999988764 322 2 25667777888889999998888775 11112 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNR----GCR--P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFK----DNV 296 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~ 296 (526)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888889999888888877653 211 2 2345566777788888888888888887654211 123
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYE----VVINGFCKIGKSDEAISLLKEMRARGLKP---TVF 367 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~ 367 (526)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4566677778888888888888887765311111 11111 22334667788888888887776542211 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccc----CCCCcCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQ----MDCLPNFV-SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSC 442 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 442 (526)
.+..+...+...|++++|...+++... .+..++.. .+..+...+.. .|+.++|...+++.+..... ..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~~------~g 327 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANR------TG 327 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHH------HC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcc------cc
Confidence 455666777777888888877776653 12112222 23333333333 37777777777776643110 11
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 443 LLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 443 l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
.+..+...| +....+++++....+
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 122333444 455556666665555
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=1.6e-10 Score=111.78 Aligned_cols=230 Identities=7% Similarity=-0.020 Sum_probs=128.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---C-CCHHhHHHH
Q 043068 234 NGFCKKGELEEAKKCMNEMMNRGC-RPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLN--GF---K-DNVSTHKSM 302 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~~~~~l 302 (526)
..+...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+. .. . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334455555555555555543210 011 234455555555566666665555555432 00 0 113345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 043068 303 LKGLCVVGKFDQAVGYLRNVMEA----NMN-PDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFSFNAV 372 (526)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 372 (526)
...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|+..+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 66666666666666666655442 100 1123566667777777777777777777655 32 2225566777
Q ss_pred HHHHHHcCCHHHHHHHHHHcccCC---CCcCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 043068 373 FRILVENGELDRAILLLKQMPQMD---CLPNFVSYNTIICGLCMAKGR---MQDVEDLVDRMIRSGHNLD-FTMYSCLLK 445 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 445 (526)
...+.+.|++++|...+++..+.. -.|........+..+....|+ +.+|...+++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 777777888888887777765421 112322222333344444466 6666666665 222222 346667888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 043068 446 GYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
.|.+.|++++|...|++.++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=2.3e-10 Score=110.66 Aligned_cols=304 Identities=9% Similarity=-0.047 Sum_probs=211.0
Q ss_pred CHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcC--CCCC--hhhHHHHHHH--HHhcCChhHHH---------HHHHHH
Q 043068 122 SDFFISKLIKAY--GDRGNVKAAIFWFHQAKQIE--NGAC--LYSYNSLLGV--LVRVNSIKLAE---------EFFHQI 184 (526)
Q Consensus 122 ~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~~ 184 (526)
++.+-+.|-..| ...+++++|..+++++.... .+.| ...|-.++.. ..-.+.++.+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 344556666677 78999999999999876532 2223 3334444432 22234444455 666666
Q ss_pred HHcCCCCCC-H---HHHHHHHHHHHHcCChhhHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 185 VKENVVPPD-V---STYTTMIRGYCKMGMIENAKKVFDVM-T---VKPN----LLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 185 ~~~~~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
.... .+.+ . ..+......+...|++++|...|++. . ..++ ..++..+...|...|+++.|+..+++.
T Consensus 89 ~~~~-~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 89 ETPQ-KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HGGG-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccC-CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4432 0111 1 12334556677899999999999886 1 1122 457888999999999999999999998
Q ss_pred HHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 253 MNRG--CR---P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFK-DNVSTHKSMLKGLCVVGKFDQAVGYLRN 321 (526)
Q Consensus 253 ~~~g--~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (526)
.+.. .. + ...+++.+...|...|++++|+..+++..+. +.. ....++..+...|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7641 11 1 2456788999999999999999999988653 211 1235778899999999999999999999
Q ss_pred HHH-----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 043068 322 VME-----ANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL----KPTVFSFNAVFRILVENGE---LDRAILLL 389 (526)
Q Consensus 322 ~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~ 389 (526)
..+ .... ...++..+...|.+.|++++|...+++..+... +.....+..+...+...|+ +++|+..+
T Consensus 248 al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887 4333 377888999999999999999999999876421 1123355666667777888 88888888
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
++.. ..|+...+...+..+....|++++|...+++.++
T Consensus 327 ~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8743 3344444433444444456999999999999875
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=4.2e-09 Score=108.07 Aligned_cols=392 Identities=10% Similarity=0.017 Sum_probs=272.1
Q ss_pred ChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCC---HH
Q 043068 67 NPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGN---VK 140 (526)
Q Consensus 67 ~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~ 140 (526)
.+.+.+..|+..+..+| .+..+|..+++.+.+.+.++.++.++++.. +.....|...+..-.+.|+ ++
T Consensus 47 ~~~d~i~~lE~~l~~np------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp CCSCHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH
T ss_pred CCHHHHHHHHHHHHHCc------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHH
Confidence 45566767777776654 467789999999999999999999999765 5566788888888888888 99
Q ss_pred HHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHH----
Q 043068 141 AAIFWFHQAKQIEN-GACLYSYNSLLGVLVRVNSI--------KLAEEFFHQIVKENVV--PPDVSTYTTMIRGYC---- 205 (526)
Q Consensus 141 ~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~---- 205 (526)
.+..+|++.....+ .|++..|...+....+.++. +...++|+..+..-+. +.+...|...+....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 99999999986552 37788898888877776654 3345788877754223 345678888887654
Q ss_pred -----HcCChhhHHHHHHhC-CCCC--CHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHc--CCC----
Q 043068 206 -----KMGMIENAKKVFDVM-TVKP--NLLAYNTMINGFCKKG-------------ELEEAKKCMNEMMNR--GCR---- 258 (526)
Q Consensus 206 -----~~g~~~~A~~~~~~~-~~~p--~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~~--g~~---- 258 (526)
..++++.+.++|++. .++. -..+|......--..+ +++.|...+.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 344578899999887 3221 1234433322211111 233444555543321 111
Q ss_pred -----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCH
Q 043068 259 -----------P-----N---ELTYNAMIYGLCING-------RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKF 312 (526)
Q Consensus 259 -----------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (526)
| + ...|...+.---..+ ..+.+..+|+++...- +-....|...+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcH
Confidence 1 1 133444443322222 1345667888887653 66788899999999999999
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC------------HHHHH
Q 043068 313 DQAV-GYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARG---------LKPT------------VFSFN 370 (526)
Q Consensus 313 ~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~ 370 (526)
++|. ++|++..... +.+...|...+....+.|++++|.++|+++.... ..|+ ...|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 9997 9999998764 3467778888999999999999999999987631 0132 23677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcccC-C-CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043068 371 AVFRILVENGELDRAILLLKQMPQM-D-CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYC 448 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 448 (526)
..+....+.|+.+.|.++|..+.+. + ..+......+.+. .+..++.+.|.++|+..++. ++-+...|...+....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 7888888899999999999999875 2 1222332223332 23335689999999999987 4447788889999888
Q ss_pred hCCCHHHHHHHHHHHHHcCCC
Q 043068 449 EEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~~ 469 (526)
..|+.+.|..+|++.++..+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSS
T ss_pred hCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998863
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=2.3e-10 Score=97.95 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 195 STYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLC 272 (526)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (526)
..+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555566666666666666666665 21 2345556666666666666666666666666552 224555666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043068 273 INGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAIS 352 (526)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (526)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 345555566666666666666666666666555322 45555666666666666666666
Q ss_pred HHHHHHH
Q 043068 353 LLKEMRA 359 (526)
Q Consensus 353 ~~~~m~~ 359 (526)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.1e-10 Score=100.03 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+...|++++|+..|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 34455555555666666666655544332 334555555555666666666666666655553 445555555555555
Q ss_pred HcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 206 KMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML 283 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (526)
..|++++|.+.++++ ..+.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554 1122344455555555555555555555555554421 2344555555555555555555555
Q ss_pred HHHHH
Q 043068 284 MAKMR 288 (526)
Q Consensus 284 ~~~~~ 288 (526)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1e-10 Score=121.45 Aligned_cols=161 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHH
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMING 235 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~ 235 (526)
..+|+.|..++.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|++.|++. .+.| +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555555555555555555555555543 444455555555555555555555555443 2222 23444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQA 315 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (526)
|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++..+.. +.+...+..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 44455555555544444443211 33444444444444444444444444444432 23334444444444444444444
Q ss_pred HHHHHHH
Q 043068 316 VGYLRNV 322 (526)
Q Consensus 316 ~~~~~~~ 322 (526)
.+.++++
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=3.8e-10 Score=100.61 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
|...+......+...|++++|++.|++.++....++...+..+..++...|++++|+..+++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5567777888888888888888888888877544677777778888888888888888888888765 456677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 043068 305 GLCVVGKFDQAVGYLRNVMEANMNPDV-------KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT---VFSFNAVFR 374 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 374 (526)
.|...|++++|...+++..+..+. +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 888888888888888888876543 44 45777788888899999999999988875 454 456666666
Q ss_pred HHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068 375 ILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445 (526)
Q Consensus 375 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 445 (526)
+|...| ..+++++...+ ..+...|...... ..+.+++|...+++.++..+. +..+...+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 765544 34445544432 2334455544432 237789999999999986544 5555554443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.3e-10 Score=120.69 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 193 DVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (526)
+..+|+.|..+|.+.|++++|++.|++. .+.| +...|..+..+|.+.|++++|++.|++.++.... +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555443 2222 2444455555555555555555555555444211 34444455555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
+.+.|++++|++.|++..+.. +.+...+..+...|.+.|++++|++.|++.++..+. +...+..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555544433 333444445555555555555555555554444322 344444444555555555555
Q ss_pred HHHHHHHH
Q 043068 351 ISLLKEMR 358 (526)
Q Consensus 351 ~~~~~~m~ 358 (526)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=4e-10 Score=100.44 Aligned_cols=201 Identities=14% Similarity=0.079 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
++..+..+...+...|++++|+..|++.....+.++...+..+..++...|++++|++.|++.++.. |.+..+|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 3445555666666677777777777766665543455555556666667777777777777776654 55566666677
Q ss_pred HHHHHcCChhhHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 043068 202 RGYCKMGMIENAKKVFDVM-TVKP-NL-------LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN---ELTYNAMIY 269 (526)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~ 269 (526)
.++...|++++|.+.+++. ...| +. ..|..+...+...|++++|++.|++.++. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777776665 2222 23 34666666667777777777777777654 343 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043068 270 GLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYE 335 (526)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 335 (526)
+|...| ..+++++...+ ..+...+.... ....+.+++|...+++..+..+. +..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~ 218 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQ 218 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 554333 33344444332 22333333222 23345567777777777776433 333333
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=8.6e-10 Score=100.68 Aligned_cols=208 Identities=7% Similarity=0.020 Sum_probs=92.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043068 165 LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEE 244 (526)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 244 (526)
++-..-.|.+..++.-...+.. ......-.-+.++|...|+++.. +.-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~~~~~~~Rs~iAlg~~~~~------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK----VTDNTLLFYKAKTLLALGQYQSQ------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC----CCCHHHHHHHHHHHHHTTCCCCC------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHHHhhHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHcCCCccC------CCCCHHHHHHHHHHHHh-ccc----
Confidence 3444556777776663322211 11223333445666666666542 12233333333333322 111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF-KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 23344444555555555555555555555544331 1234444455555555555555555555554
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 043068 324 EANMNP-----DVKSYEVVINGF--CKIG--KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQM 392 (526)
Q Consensus 324 ~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 392 (526)
+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 22 123333333331 1112 455555555555433 233222222223444455555555555433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=7.2e-11 Score=108.71 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=110.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC--------
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE------NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-------- 222 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------- 222 (526)
..++..+...+...|++++|+..|+++++. +..+....++..+...|...|++++|.+.+++. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666666666666666665543 111233455666666666666666666666654 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 043068 223 -KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR------GCRP-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN---- 290 (526)
Q Consensus 223 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 290 (526)
+.....+..+...+...|++++|+..|++..+. +..| ...++..+...|...|++++|..+++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122445666777777777777777777776654 1122 2445667777777778888877777776542
Q ss_pred ---CCCCC-HHhHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 291 ---GFKDN-VSTHKSMLKGLCVVGK------FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 291 ---~~~~~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
...+. ...+..+...+...+. +..+...++..... ......++..+...|...|++++|...+++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122 2223333333332222 22222222211111 111345677788888888888888888887764
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.2e-10 Score=105.34 Aligned_cols=229 Identities=11% Similarity=-0.009 Sum_probs=160.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHhHHHH
Q 043068 237 CKKGELEEAKKCMNEMMNR-------GCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN------GF-KDNVSTHKSM 302 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 302 (526)
...|++++|+..|++.++. ..+....++..+...|...|++++|+..++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 11224567888999999999999999999998754 21 2345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHH
Q 043068 303 LKGLCVVGKFDQAVGYLRNVMEAN-----M--NPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR------GLKP-TVFS 368 (526)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~ 368 (526)
...|...|++++|...+++..+.. . .....++..+...|...|++++|+..++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988651 1 224567888999999999999999999998764 1122 3467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccC-------CCCcCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHCCCCC
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQM-------DCLPNFVSYNTIICGLCMAKGR------MQDVEDLVDRMIRSGHNL 435 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~g~------~~~a~~~~~~~~~~~~~p 435 (526)
+..+...|...|++++|.++++++.+. ...+....+...+..+....+. +.++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998752 1123322333333332222122 2222222222211 1122
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 436 DFTMYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
...++..+..+|.+.|++++|...+++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467888999999999999999999998764
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.5e-08 Score=92.47 Aligned_cols=176 Identities=9% Similarity=0.035 Sum_probs=85.3
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 213 AKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGC-RPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 213 A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
|...|++. . -.++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44445443 1 123444444555556666666666666665554432 11344455555666666666666666666654
Q ss_pred cCCCC-----CHHhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 290 NGFKD-----NVSTHKSMLKGL--CVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 290 ~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
. .| +..+...++.++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 23 233444444442 2223 566666666665443 233222233333555666666666666544331
Q ss_pred C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 361 G---------LKPTVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 361 ~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
- -+-+..++..+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 01133444344444444454 55555555555
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=3.4e-09 Score=98.37 Aligned_cols=171 Identities=10% Similarity=-0.066 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHH
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-------TVKPN-LLAYNTMINGFCKKGELEE 244 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~li~~~~~~g~~~~ 244 (526)
++++|...|++. ...|...|++++|.+.|++. +..++ ..+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366666666655 23455667777776666554 11111 3456666677777777777
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHHcCCHH
Q 043068 245 AKKCMNEMMNRGCR-PN----ELTYNAMIYGLCIN-GRVDEAKMLMAKMRLNGFK-DN----VSTHKSMLKGLCVVGKFD 313 (526)
Q Consensus 245 A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~ 313 (526)
|+..|++.++.... .+ ..++..+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 77776666543100 01 23455555555553 6666666555555432100 00 223444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 314 QAVGYLRNVMEANMNPDV------KSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
+|+..|++..+....... ..|..+..++...|++++|+..|++..+
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555543322111 1334444445555555555555555443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=8.6e-09 Score=95.60 Aligned_cols=200 Identities=12% Similarity=-0.027 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc--C-ChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 176 LAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM--G-MIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
+|.+++.+..+.- ++....| .+ .+. + ++++|...|++. +..|...|++++|.+.|++.
T Consensus 3 ~a~~~~~~a~k~~--~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKG--VPSSGFM-KL----FSGSDSYKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHS--SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh--CcCCCcc-hh----cCCCCCccHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Confidence 4666666666552 3321122 21 222 2 477887777765 44677889999999998887
Q ss_pred HHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHHc-CCHHHHHHHHHH
Q 043068 253 MNR----GCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KDN--VSTHKSMLKGLCVV-GKFDQAVGYLRN 321 (526)
Q Consensus 253 ~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~-g~~~~A~~~~~~ 321 (526)
.+. |..++ ..+|+.+..+|.+.|++++|+..+++..+... .+. ..++..+...|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 654 21111 45788888888899999999988888764310 111 34677777778775 888888888887
Q ss_pred HHHcCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 043068 322 VMEANMNP-D----VKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV------FSFNAVFRILVENGELDRAILLLK 390 (526)
Q Consensus 322 ~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~ 390 (526)
..+..... + ..++..+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542111 1 345677777888888888888888887765322111 145666677777888888888888
Q ss_pred Hccc
Q 043068 391 QMPQ 394 (526)
Q Consensus 391 ~~~~ 394 (526)
+..+
T Consensus 224 ~al~ 227 (292)
T 1qqe_A 224 EGQS 227 (292)
T ss_dssp GGGC
T ss_pred HHHh
Confidence 7776
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=5.5e-09 Score=95.18 Aligned_cols=195 Identities=8% Similarity=-0.001 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN-P-DVKSY 334 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~ 334 (526)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|...|+++.+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566666677777788888888888777653 233 556677777777788888888888777776332 1 23456
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH
Q 043068 335 EVVINGFCK--------IGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN 405 (526)
Q Consensus 335 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 405 (526)
..+..++.. .|++++|+..|+++.+. .|+. .....+.......+.. ...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~------------------~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL------------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH------------------HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH------------------HHHHH
Confidence 666667766 77777777777777665 2332 1221111110000000 00123
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCccch
Q 043068 406 TIICGLCMAKGRMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEE----------GNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 406 ~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
.+...+.. .|++++|...++++++..+.. ....+..+..+|... |++++|...++++++..+..+..
T Consensus 153 ~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 153 EAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 33444545 499999999999998864432 245788888888866 89999999999999999877654
Q ss_pred hhh
Q 043068 474 KNF 476 (526)
Q Consensus 474 ~~~ 476 (526)
...
T Consensus 232 ~~a 234 (261)
T 3qky_A 232 RTA 234 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=7.3e-09 Score=90.76 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNA----------------MIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
.....+...|++++|+..|++..+.... +...|.. +..+|.+.|++++|+..|++..+.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 3444555666666666666666554211 1222333 4555555555555555555555443 34
Q ss_pred CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 295 NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK--SDEAISLLKEMRARGLKPTVFSFNAV 372 (526)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 372 (526)
+...+..+...+...|++++|...|+++++..+. +..++..+...|...|. .+.+...++.... ..|....+...
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 4455555555555555555555555555554433 44455555554443332 2223333333321 11111122222
Q ss_pred HHHHHHcCCHHHHHHHHHHccc
Q 043068 373 FRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~ 394 (526)
..++...|++++|+..|++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3333444555555555555554
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=9e-09 Score=82.53 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.|..+...+...|++++|.++|+++.+.+.. +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3445555666666666666666666554322 44555555566666666666666666665543 334455555556666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
..|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665554322 445555555556666666666666655544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=7e-09 Score=94.48 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
..+..+...+.+.|++++|+..|+++....+... ...+..+..++.+.|++++|+..|+++++.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554432110 334445555555555555555555555554
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=4.9e-09 Score=84.14 Aligned_cols=126 Identities=17% Similarity=0.298 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+...|++++|..+|+++...++ .+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 34445555555555555555555554432 234455555555555555555555555555543 344445555555555
Q ss_pred HcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043068 206 KMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
..|++++|.+.++++ . .+.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555444 1 122334444444555555555555555554443
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.5e-07 Score=86.81 Aligned_cols=218 Identities=8% Similarity=-0.003 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----HHc--
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN--SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY----CKM-- 207 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 207 (526)
....++|+++++++...++ .+..+|+.--.++...| +++++++.++.++..+ |.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccc
Confidence 3344678888887777764 34666777777777777 7888888888887776 66666776655555 444
Q ss_pred -CChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 043068 208 -GMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELE--EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR------ 276 (526)
Q Consensus 208 -g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------ 276 (526)
+++++++++++++ ..+.+...|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.......+.++
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 5566666666665 22335556655555555566655 666666666665444 55555554444444443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQ-AVGYLRNVMEAN--MNPDVKSYEVVINGFCKIGKSDEAISL 353 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (526)
++++++.++++.... +.|...|+-....+.+.|+... +..+..++.+.+ -..+...+..++..|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 455555555554443 3444444444444444444222 223333333221 012344444445555555555555555
Q ss_pred HHHHH
Q 043068 354 LKEMR 358 (526)
Q Consensus 354 ~~~m~ 358 (526)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=9.6e-09 Score=90.00 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
..+...|.+.|++++|+..|++..+..+ .+...+..+..++...|++++|+..|++.++.. |.+..++..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3477777888888888888888877664 457777788888888888888888888888776 6777788888777765
Q ss_pred cCC--hhhHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043068 207 MGM--IENAKKVFDVMT-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYN 265 (526)
Q Consensus 207 ~g~--~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (526)
.|+ .+.+...++... ..|....+..+..++...|++++|+..|++.++. .|+.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 543 344555555552 1222223444555566677788888888877765 55544333
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=2.1e-08 Score=92.64 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=121.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHH-
Q 043068 156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMI- 233 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li- 233 (526)
.+...+..+...+.+.|++++|+..|++.++.. |.+...+..+...+.+.|++++|.+.++++ ...|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 345566677778888888888888888888876 778888888888888888888888888887 3455554333322
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCC
Q 043068 234 NGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGK 311 (526)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 311 (526)
..+...++.++|+..|++..+.... +...+..+...+...|++++|+..|+++.+.. +.+ ...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 3356677778888888888776432 66777788888888888888888888887764 222 5677778888888888
Q ss_pred HHHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVM 323 (526)
Q Consensus 312 ~~~A~~~~~~~~ 323 (526)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888877777654
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1.5e-07 Score=86.80 Aligned_cols=223 Identities=9% Similarity=0.009 Sum_probs=151.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----HHc---C
Q 043068 240 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING--RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL----CVV---G 310 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 310 (526)
...++|++++++++..+.. ....|+.--..+...| ++++++++++.+.... +.+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3345777777777776433 4555666666666666 7888888888777654 44455555443333 444 6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------H
Q 043068 311 KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD--EAISLLKEMRARGLKPTVFSFNAVFRILVENGE------L 382 (526)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~ 382 (526)
++++++.+++++.+.+++ +..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 778888888888887655 7777877777777778777 888888888776433 66667666666666665 7
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043068 383 DRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR-MQDVEDLVDRMIRSG--HNLDFTMYSCLLKGYCEEGNVENVMQI 459 (526)
Q Consensus 383 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 459 (526)
+++++.+++++... +-|...|+-+-..+... |+ .+++..+.+++.+.+ -..+...+..++.+|.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88888888887743 23455555555444443 54 444556666665543 133778888888999999999999999
Q ss_pred HHHHHH-cCC
Q 043068 460 AHEMVT-KKG 468 (526)
Q Consensus 460 ~~~m~~-~~~ 468 (526)
++.+.+ .++
T Consensus 281 ~~~l~~~~Dp 290 (306)
T 3dra_A 281 YDLLKSKYNP 290 (306)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHhccCh
Confidence 999886 455
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=1.1e-08 Score=87.01 Aligned_cols=161 Identities=10% Similarity=0.023 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHH-HH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMING-FC 237 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~-~~ 237 (526)
.+..+...+.+.|++++|+..|++.++.. |.+...+..+..++.+.|++++|.+.+++. ...|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34455556667777777777777766654 566677777777777777777777777766 233333322222111 11
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHHcCCHHHHH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD-NVSTHKSMLKGLCVVGKFDQAV 316 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 316 (526)
..++..+|+..|++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223355566665554222 45555566666666666666666666665543111 2335555666666666666666
Q ss_pred HHHHHHH
Q 043068 317 GYLRNVM 323 (526)
Q Consensus 317 ~~~~~~~ 323 (526)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=2.5e-09 Score=111.41 Aligned_cols=172 Identities=9% Similarity=-0.058 Sum_probs=122.0
Q ss_pred HcCCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 134 GDRGNVKAAIFWFHQAK--------QIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 134 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
...|++++|++.|+++. ...+ .+...+..+...+.+.|++++|++.|+++++.+ |.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67888889988888887 4432 446677778888888888888888888888776 677788888888888
Q ss_pred HcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 206 KMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML 283 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 283 (526)
..|++++|.+.|++. ...| +...|..+..++.+.|++++ ++.|++..+.... +...|..+..++.+.|++++|+..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888776 2233 45677777777888888888 8888777776433 566777777777777777777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 284 MAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
|+++.+.. +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 77766543 2334555556665554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.3e-08 Score=106.04 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=128.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 043068 237 CKKGELEEAKKCMNEMM--------NRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCV 308 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (526)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|+..|+++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 332 2356677888888888888888888888887765 5677788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043068 309 VGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILL 388 (526)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (526)
.|++++|...|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888887654 66778888888888888888 88888887763 22566788888888888888888888
Q ss_pred HHHcccCCCCcCH-HHHHHHHHHH
Q 043068 389 LKQMPQMDCLPNF-VSYNTIICGL 411 (526)
Q Consensus 389 ~~~~~~~~~~p~~-~~~~~ll~~~ 411 (526)
|+++.+. .|+. ..+..+..++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTL 578 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHT
T ss_pred HHhhccc--CcccHHHHHHHHHHH
Confidence 8888873 4664 3444444443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.8e-08 Score=85.53 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh
Q 043068 95 YTAITDVLLSHSLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGV-LVR 170 (526)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 170 (526)
+...+..+.+.|++++|...+++... .++..+..+...|...|++++|+..|+++....+ +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 44555666666666666666665542 2334555666666666666666666666554442 33222221111 112
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043068 171 VNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN---LLAYNTMINGFCKKGELEEAK 246 (526)
Q Consensus 171 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~ 246 (526)
.+....|+..+++.++.. |.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334556666666554 455666666666666666666666666654 33332 335555666666666666666
Q ss_pred HHHHHHH
Q 043068 247 KCMNEMM 253 (526)
Q Consensus 247 ~~~~~m~ 253 (526)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=2.8e-09 Score=87.96 Aligned_cols=140 Identities=7% Similarity=-0.041 Sum_probs=64.3
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcC
Q 043068 60 KVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDR 136 (526)
Q Consensus 60 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 136 (526)
.++..+|+.++|+..|..+....|. ....+..++.+|.+.|++++|...+++.. +.++..+..+...|...
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444456666666666666544321 11224445555555555555555554332 22333444455555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 137 GNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEF-FHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 137 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
|++++|+..|++..+.++ .+..+|..+...+.+.|++++|.+. +++.++.. |.+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 555555555555444442 2344444444455555544443332 24444443 444444444444444433
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=4.9e-08 Score=86.58 Aligned_cols=191 Identities=10% Similarity=-0.009 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDV--KSYE 335 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 335 (526)
+...+..+...+.+.|++++|+..|+++.+..... ....+..+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556666778888999999999999988753111 1356777888999999999999999998887544221 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcccCC
Q 043068 336 VVINGFCK------------------IGKSDEAISLLKEMRARGLKPTVF-SFNAVFRILVENGELDRAILLLKQMPQMD 396 (526)
Q Consensus 336 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 396 (526)
.+..++.. .|++++|+..|+++.+. .|+.. .+...... +... ..+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~------~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLK------DRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHH------HHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHH------HHHH---
Confidence 45555544 34566666666666654 23321 11111100 0000 0000
Q ss_pred CCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 397 CLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD--FTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 397 ~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.....+...+... |++++|...++++++..+... ...+..+..+|.+.|++++|.+.++++...++...
T Consensus 148 -----~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0011223344554 999999999999998644311 25788899999999999999999999999887554
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.2e-08 Score=92.53 Aligned_cols=178 Identities=12% Similarity=-0.029 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 108 ISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
.+.....++...+.+...+..+...+...|++++|+..|+++....+ .+...+..+...+.+.|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34455556555555556677888889999999999999999988775 46788889999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 043068 188 NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-NELTY 264 (526)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~ 264 (526)
. |............+.+.++.++|.+.+++. . .+.+...+..+...+...|++++|+..|.++.+..... +...+
T Consensus 181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 5 333333333344467788888898888876 2 24567889999999999999999999999999874331 26788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 265 NAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
..++..+...|+.++|...|++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999888765
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=8.7e-08 Score=84.09 Aligned_cols=159 Identities=9% Similarity=0.006 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIG----KSDEAISLLKEMRARGLKPTVFSFNAVF 373 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li 373 (526)
.+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|++.|++..+.| +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444332 23333334434433 3 4444444444444332 233333444
Q ss_pred HHHHH----cCCHHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043068 374 RILVE----NGELDRAILLLKQMPQMDCLPN---FVSYNTIICGLCMA---KGRMQDVEDLVDRMIRSGHNLDFTMYSCL 443 (526)
Q Consensus 374 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 443 (526)
..|.. .+++++|+++|++..+.+ |+ ...+..+-..+... .++.++|..++++..+. ..+...+..|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 44433 444555555555444433 21 23333333333220 13455555555555543 1123344444
Q ss_pred HHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 043068 444 LKGYCEE-G-----NVENVMQIAHEMVTKK 467 (526)
Q Consensus 444 ~~~~~~~-g-----~~~~a~~~~~~m~~~~ 467 (526)
...|.+. | +.++|...|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444432 2 5555555555555554
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=7.2e-08 Score=85.52 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 194 VSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN----LLAYNTMINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
...+..+...+.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344555566666667777777766665 11121 235556666666677777777777766665
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2.2e-08 Score=93.56 Aligned_cols=130 Identities=12% Similarity=-0.035 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGC---RP--NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KD--NVS 297 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~ 297 (526)
+|+.+...|.+.|++++|+..|++..+.-. .+ ...++..+...|.. |++++|+..|++..+... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 455555666666666666666665543210 00 12344455555555 666666666655543210 00 023
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANM----NPD-VKSYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
++..+...|.+.|++++|+..|++..+... .+. ...+..+...+...|++++|+..|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444455555555555555555555443210 000 1133334444444455555555555554
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=5.4e-08 Score=85.41 Aligned_cols=140 Identities=6% Similarity=-0.069 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC----ChhhHHHHH
Q 043068 142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG----MIENAKKVF 217 (526)
Q Consensus 142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 217 (526)
|+++|++..+.+ +..++..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 444444444332 34444444445555555555555555554443 34444444444444 3 444455544
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 043068 218 DVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRGCR-PNELTYNAMIYGLCI----NGRVDEAKMLMAKMR 288 (526)
Q Consensus 218 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~ 288 (526)
++.-...+...+..|...|.. .+++++|++.|++..+.|.. .....+..|...|.. .+++++|..+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 444112233444444444443 44455555555544443211 013344444444444 444455555554444
Q ss_pred H
Q 043068 289 L 289 (526)
Q Consensus 289 ~ 289 (526)
+
T Consensus 157 ~ 157 (212)
T 3rjv_A 157 S 157 (212)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=8.2e-09 Score=85.12 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=70.5
Q ss_pred HHhCCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068 102 LLSHSLISIAASLLKNSNKLSDF---FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE 178 (526)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (526)
+...|++++|...+++....++. .+..+...|.+.|++++|++.|++..+..+ .+..+|..+..++.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHH
Confidence 33345555555555555443332 233455556666666666666666555543 34555555666666666666666
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcC
Q 043068 179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKV-FDVM-TVKP-NLLAYNTMINGFCKKG 240 (526)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~li~~~~~~g 240 (526)
..|++.++.. |.+..+|..+...|.+.|++++|.+. +++. .+.| +...|......+...|
T Consensus 86 ~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 6666665554 44555566666666666655554433 2332 2222 3344444444444443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.4e-08 Score=102.13 Aligned_cols=147 Identities=10% Similarity=-0.026 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043068 106 SLISIAASLLKNSNK---LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFH 182 (526)
Q Consensus 106 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 182 (526)
|++++|...+++... .+...+..+...|...|++++|++.|++..+..+ .+...+..+...+...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555554332 2233455555555555555555555555554442 234555555555555555555555555
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 043068 183 QIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKK---GELEEAKKCMNEMMNR 255 (526)
Q Consensus 183 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 255 (526)
+..+.. |.+...+..+..+|.+.|++++|.+.+++. .. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 82 ~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 555554 445555555555555555555555555554 11 22344555555555555 5555555555555554
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.92 E-value=1.2e-06 Score=87.22 Aligned_cols=204 Identities=11% Similarity=-0.037 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 243 EEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV 322 (526)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (526)
+.+..+|++++... +-+...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 45678899888763 346778888888888999999999999999887 44433333 23322222222 2222
Q ss_pred HHcC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 043068 323 MEAN---------M---NPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVE-NGELDRAILLL 389 (526)
Q Consensus 323 ~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~ 389 (526)
.+.- . ......|...+....+.++.+.|.++|++. ... ..+...|...+..-.. .++.+.|.++|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2210 0 011245777777777888999999999999 321 2244444433322222 34699999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043068 390 KQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 465 (526)
+...+.. .-+...+...+..... .|+.+.|..+|+++. -....|...+..-...|+.+.+..+++++.+
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~-~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLR-IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9988742 1223445556655444 499999999999972 2578888888877888999999999988875
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=4.8e-08 Score=99.83 Aligned_cols=162 Identities=7% Similarity=-0.042 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 136 RGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
.|++++|++.|+++.+..+ .+...|..+...+.+.|++++|.+.|++..+.. |.+..++..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788899999998877653 457788888889999999999999999998876 7778889999999999999999999
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 043068 216 VFDVM-TV-KPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCIN---GRVDEAKMLMAKMRLN 290 (526)
Q Consensus 216 ~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 290 (526)
.+++. .. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 98886 22 335778888889999999999999999998887433 567788888888888 8999999999988876
Q ss_pred CCCCCHHhHHHH
Q 043068 291 GFKDNVSTHKSM 302 (526)
Q Consensus 291 ~~~~~~~~~~~l 302 (526)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3344444433
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=1.5e-07 Score=82.54 Aligned_cols=91 Identities=9% Similarity=-0.084 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 043068 96 TAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIK 175 (526)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (526)
..++..+...|++++|...+++...+++..+..+...|...|++++|+..|++.....+ .+...|..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccHH
Confidence 34455555555666666655555544555555555555556666666666655555442 33455555555555556666
Q ss_pred HHHHHHHHHHHc
Q 043068 176 LAEEFFHQIVKE 187 (526)
Q Consensus 176 ~A~~~~~~~~~~ 187 (526)
+|++.|++..+.
T Consensus 89 ~A~~~~~~al~~ 100 (213)
T 1hh8_A 89 LAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 666655555553
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=2.7e-06 Score=79.21 Aligned_cols=174 Identities=11% Similarity=0.022 Sum_probs=112.8
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-C-C
Q 043068 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM-G-M 209 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 209 (526)
..+.+..++|+++++++...++ .+..+|+.--..+...| .+++++++++.++... |.+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555678888888877764 45666777777777777 4888888888888776 67777887777777766 6 7
Q ss_pred hhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---
Q 043068 210 IENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELE--------EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR--- 276 (526)
Q Consensus 210 ~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--- 276 (526)
+++++++++++ ..+.|...|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 77777777776 22345666665555554444444 777777777776544 66677766666666554
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 277 ----VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 277 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666666544 4555555554444444443
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=5.7e-07 Score=78.70 Aligned_cols=128 Identities=11% Similarity=-0.016 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING 275 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (526)
.+..+...+...|++++|.+.|++.- .|+...|..+...+.+.|++++|++.|++..+... .+...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34455666667777777777777663 55666777777777777777777777777766532 25566677777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCC----------------HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 276 RVDEAKMLMAKMRLNGFKDN----------------VSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (526)
++++|+..|+++.+.. +.+ ...+..+...|.+.|++++|...+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777776543 222 2556666777777777777777777766654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=2.2e-07 Score=86.69 Aligned_cols=96 Identities=10% Similarity=-0.076 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-H
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRP-----NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN-V 296 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~ 296 (526)
.++..+...|.. |++++|+..|++..+..... ...++..+...|.+.|++++|+..|++..+. +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 355566666666 77777777776665431110 1345666777777778888888777776542 11111 1
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
..+..++..+...|++++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 255556666777788888888888877
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=3.5e-06 Score=78.48 Aligned_cols=224 Identities=10% Similarity=0.077 Sum_probs=133.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-C-CHH
Q 043068 237 CKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-G-KFD 313 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 313 (526)
.+.+..++|++++++++..+.. +..+|+.--..+...| .+++++.+++.+.... +.+..+|+--...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3344455677777777766433 4455666555566666 4777777777776654 45555666555555555 5 667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----
Q 043068 314 QAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD--------EAISLLKEMRARGLKPTVFSFNAVFRILVENGE---- 381 (526)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 381 (526)
+++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 777777777766544 6666665555555555555 777777777665432 55666666666666665
Q ss_pred ---HHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCC--------------------HHHHHHHHHHHHHCC-----
Q 043068 382 ---LDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGR--------------------MQDVEDLVDRMIRSG----- 432 (526)
Q Consensus 382 ---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~--------------------~~~a~~~~~~~~~~~----- 432 (526)
++++++.+++++... |+ ...|+-+-..+ ...|+ ..+..+....+...+
T Consensus 221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFL-KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH-HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 567777777766632 33 33444333332 22233 233334444443322
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 043068 433 HNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 467 (526)
Q Consensus 433 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 467 (526)
-.++...+.-|++.|...|+.++|.++++.+.++-
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 13578888999999999999999999999987543
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=1.5e-05 Score=79.30 Aligned_cols=172 Identities=7% Similarity=-0.063 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKE 356 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (526)
.+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +. +...|. .|+...+.++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~----~y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSL----YYGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHH----HHHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHH----HHHhhcchhHH---HHH
Confidence 355778899988754 667888999999999999999999999999988 32 433333 23332222222 222
Q ss_pred HHHCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHH--HHHHHHHhcCCCHHHHH
Q 043068 357 MRARG---------LKP---TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYN--TIICGLCMAKGRMQDVE 422 (526)
Q Consensus 357 m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~g~~~~a~ 422 (526)
+.+.- ..+ ....|...+....+.++.+.|.++|+++ ... ..+...|. +.+.. ...++.+.|.
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~--~~~~d~~~ar 340 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY--YATGSRATPY 340 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH--HHHCCSHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH--HHCCChHHHH
Confidence 22210 001 1245667777777888999999999999 321 12333443 22322 2224799999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043068 423 DLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 423 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 463 (526)
.+|+..++.-. -++..|...++...+.|+.+.|..+|+++
T Consensus 341 ~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998643 25667777888888899999999999997
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=6.5e-07 Score=71.04 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4555566666666666666666666555322 45555666666666666666666666665543 444555666666666
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 043068 308 VVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~ 326 (526)
..|++++|.+.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 6666666666666665553
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=8.9e-07 Score=73.79 Aligned_cols=127 Identities=16% Similarity=0.067 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4555556666666666666666666554322 45555566666666666666666666665543 344555556666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 043068 308 VVGKFDQAVGYLRNVMEANMNPDVKSYEV--VINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 357 (526)
..|++++|...+++..+.... +...+.. .+..+...|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666554332 3333322 222244555566665555544
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=3e-07 Score=82.79 Aligned_cols=190 Identities=8% Similarity=-0.066 Sum_probs=107.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHHc------------CC------
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSL-------LGVLVRVNSIKLAEEFFHQIVKE------------NV------ 189 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~------------~~------ 189 (526)
..++...|.+.|.++...++ .....|..+ ...+.+.++..+++..+..-++. |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 46777777777777776663 335566665 45555555555555555544431 10
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 043068 190 -VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--ELTYN 265 (526)
Q Consensus 190 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~ 265 (526)
+..-...+..+...+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 0000223444566666777777777777766 223433355555566667777777777776443321 110 22455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (526)
.+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 566667777777777777776653322132 2344555666666777777777777766653
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=2.7e-06 Score=78.65 Aligned_cols=164 Identities=16% Similarity=0.084 Sum_probs=113.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043068 302 MLKGLCVVGKFDQAVGYLRNVMEANMN-PDV----KSYEVVINGFCKIGKSDEAISLLKEMRARGLK-PT----VFSFNA 371 (526)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 371 (526)
.+..+...|++++|..++++..+.... ++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677788888888888887764322 121 12334666666777888888888888764222 22 236788
Q ss_pred HHHHHHHcCCHHHHHHHHHHccc----C-CCCcCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 043068 372 VFRILVENGELDRAILLLKQMPQ----M-DCLPNF-VSYNTIICGLCMAKGRMQDVEDLVDRMIRS----GHNLD-FTMY 440 (526)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 440 (526)
+...|...|++++|+..|+++.+ . +..+.. .++..+...+... |++++|.+.+++.++. +..+. ..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888999998888888773 1 122222 2555666666554 9999999999887753 22222 6789
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHc
Q 043068 441 SCLLKGYCEEGN-VENVMQIAHEMVTK 466 (526)
Q Consensus 441 ~~l~~~~~~~g~-~~~a~~~~~~m~~~ 466 (526)
..+..+|.+.|+ +++|.+.+++.++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999994 69999999888653
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=6.8e-07 Score=82.75 Aligned_cols=60 Identities=5% Similarity=-0.189 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHc
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMRAR----GLKPT-VFSFNAVFRILVENGE-LDRAILLLKQM 392 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~-~~~a~~~~~~~ 392 (526)
++..+...|.+.|++++|+..+++..+. +..+. ..+|..+..++.+.|+ +++|.+.+++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3444444444455555554444444321 11111 2344444444555552 34444444443
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.1e-07 Score=87.43 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK 304 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 304 (526)
+...+..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666666777777777777777777665322 56666667777777777777777777766543 445566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 043068 305 GLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~ 325 (526)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777666554
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=1e-06 Score=81.46 Aligned_cols=167 Identities=8% Similarity=-0.013 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--H
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE-----LTYNAMIYGLCINGRVDEAKMLMAKMRLNGF---KDN--V 296 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 296 (526)
..+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555667777888888888888877765322111 1233455556677788888888887764321 111 3
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-C
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVME---ANMN-P--DVKSYEVVINGFCKIGKSDEAISLLKEMRARG----LKP-T 365 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~ 365 (526)
.+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|+..+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677778888888888888888877762 2111 1 12467777788888888888888888765431 111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHcc
Q 043068 366 VFSFNAVFRILVENGELDRA-ILLLKQMP 393 (526)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 393 (526)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45677777778888888888 66666554
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=9.9e-07 Score=79.43 Aligned_cols=186 Identities=9% Similarity=-0.031 Sum_probs=134.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHHcCChhhHHHHHHhC-CCCCC----------------
Q 043068 170 RVNSIKLAEEFFHQIVKENVVPPDVSTYTTM-------IRGYCKMGMIENAKKVFDVM-TVKPN---------------- 225 (526)
Q Consensus 170 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~-~~~p~---------------- 225 (526)
..++...|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+..- ++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999999987 7888999888 56666666666666555543 33332
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HH
Q 043068 226 ------LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN--VS 297 (526)
Q Consensus 226 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 297 (526)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1233456677888899999999998887653 444355556667888999999999998554321 111 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVMEANMNPD--VKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 667788888888899999888888875433243 335666777888888888888888888876
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=5.1e-07 Score=75.28 Aligned_cols=92 Identities=12% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+...|++++|...|++.....+ .+..++..+...+...|++++|.+.+++.++.. |.+..++..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 44455555556666666666666555442 235555555555666666666666666655554 445555555555555
Q ss_pred HcCChhhHHHHHHhC
Q 043068 206 KMGMIENAKKVFDVM 220 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~ 220 (526)
..|++++|.+.|++.
T Consensus 93 ~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 93 ALGKFRAALRDYETV 107 (166)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 555555555555544
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=1.8e-06 Score=67.77 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
..|..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444555555555555555555544321 134444444455555555555555555544432 23344444444455
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 043068 307 CVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~ 325 (526)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555544443
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=1.3e-07 Score=86.93 Aligned_cols=195 Identities=11% Similarity=-0.004 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043068 260 NELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVIN 339 (526)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 339 (526)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 55678888899999999999999999998875 567889999999999999999999999999987654 7888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH
Q 043068 340 GFCKIGKSDEAISLLKEMRARGLKPTV-FSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM 418 (526)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~ 418 (526)
+|...|++++|+..|++..+.+ |+. ..+...+....+......... ........+... ...+..+. . |+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i-~~~l~~l~-~-~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESEL-HSYLTRLI-A-AER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHH-HHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHH-HHHHHHHH-H-HHH
Confidence 9999999999999999987642 211 111112222211111111111 111122233333 33333433 3 899
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcC
Q 043068 419 QDVEDLVDRMIRSGHNLD-FTMYSCLLKGYCEE-GNVENVMQIAHEMVTKK 467 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 467 (526)
++|.+.+++.++. .|+ ......+...+.+. +.+++|.++|+++.+..
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999988865 444 44455555555555 77899999999887643
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=1.8e-06 Score=68.36 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
..+..+...+...|++++|...|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 3445555555555666666666655555421 244455555555555555555555555555443 33444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043068 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK 346 (526)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (526)
...|++++|...+++..+..+. +...+..+...+...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555554322 34444445445444443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=3.7e-07 Score=79.12 Aligned_cols=61 Identities=15% Similarity=-0.067 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIEN-----GACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 185 (526)
.+..+...|...|++++|+..+++...... .....++..+...+...|++++|.+.+++..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444445555555555555544433100 0112334444444444555555544444443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.8e-06 Score=79.88 Aligned_cols=161 Identities=7% Similarity=-0.002 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCC--HHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGAC-----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV--VPPD--VSTY 197 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~--~~~~ 197 (526)
...+..+...|++++|.+.+++......... ...+..+...+...|++++|++.+++..+... ..+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455566677777777777776655432111 11233344455566667777766666654320 0111 3355
Q ss_pred HHHHHHHHHcCChhhHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHH
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVM----TVKPN-----LLAYNTMINGFCKKGELEEAKKCMNEMMNRG----CRP-NELT 263 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~ 263 (526)
+.+...|...|++++|.+.|++. ...|+ ..++..+...|.+.|++++|+..+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56666666666666666655543 00111 1345555555556666666665555544321 000 1344
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHH
Q 043068 264 YNAMIYGLCINGRVDEA-KMLMAKM 287 (526)
Q Consensus 264 ~~~li~~~~~~g~~~~a-~~~~~~~ 287 (526)
|..+..+|.+.|++++| ...+++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555555555555555 4444443
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.1e-06 Score=68.93 Aligned_cols=93 Identities=16% Similarity=0.311 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-T-VKPNLLAYNTMINGFC 237 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~li~~~~ 237 (526)
.+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++ . .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444444444444444444433 333444444444444444444444444433 1 1123333444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043068 238 KKGELEEAKKCMNEMMN 254 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~ 254 (526)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=3.5e-07 Score=75.02 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
...+..+...+.+.|++++|+..|++....... +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445666777777777777777777777766332 56667777777777777777777777776654 4556667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 043068 306 LCVVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~ 326 (526)
|.+.|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777653
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=1.9e-06 Score=68.33 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
.+......|.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+..+++.++.++. +...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 45555666666777777777776666554 455666666666666677777777666666665433 5566666666666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 043068 343 KIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~ 360 (526)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=6.9e-07 Score=75.66 Aligned_cols=120 Identities=7% Similarity=0.052 Sum_probs=70.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHHcCCH--HH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG-LCVVGKF--DQ 314 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 314 (526)
..|++++|+..+++..+... .+...+..+...|...|++++|...|+++.+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34666666666666665532 245566666666666666666666666665543 3445555556666 5566666 66
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 315 AVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
|...++++.+..+. +...+..+...|...|++++|+..|+++.+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666665433 4555666666666666666666666666654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=5.3e-07 Score=76.36 Aligned_cols=132 Identities=9% Similarity=0.132 Sum_probs=92.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH--H
Q 043068 342 CKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM--Q 419 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~--~ 419 (526)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...++...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577777888887776653 2355677777888888888888888888877632 123444555554423334887 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 420 DVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 420 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
+|...++++++..+. +...+..+..+|...|++++|...++++++..+..+.....
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 999999999887544 67888889999999999999999999999998876654433
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-06 Score=69.41 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.+..+...+...|++++|++.|++..+.... +...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444444444444444433111 33334444444444444444444444444332 223334444444444
Q ss_pred HcCCHHHHHHHHHHHHH
Q 043068 308 VVGKFDQAVGYLRNVME 324 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~ 324 (526)
+.|++++|...+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.8e-07 Score=77.86 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNR----GCRP--NELTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444444445555554444443332 1010 1122344444444555555555554444
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=3.5e-07 Score=79.20 Aligned_cols=150 Identities=15% Similarity=0.036 Sum_probs=77.3
Q ss_pred HHHHHHHcCChhhHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--------------HH
Q 043068 200 MIRGYCKMGMIENAKKVFDVMT--VKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN--------------EL 262 (526)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~ 262 (526)
.+......|+++++.+.++.-. .......+..+...+.+.|++++|+..|++..+.... |+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3444455666666666665431 1113445667777788888888888888887765221 10 14
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 55555556666666666666666655543 344555555566666666666666666665554332 4444555555554
Q ss_pred hcCChhHHH
Q 043068 343 KIGKSDEAI 351 (526)
Q Consensus 343 ~~g~~~~A~ 351 (526)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=2e-06 Score=81.18 Aligned_cols=131 Identities=11% Similarity=-0.044 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN--------------ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
...+..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++.+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33455555555666666666666666555422211 3556666666666666666666666666554
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043068 292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA-ISLLKEMR 358 (526)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 358 (526)
+.+...+..+..+|...|++++|...|++..+..+. +...+..+...+.+.|+.++| ...++.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666665433 455566666666666666655 33444443
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=3.8e-05 Score=71.21 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHH
Q 043068 278 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVG--KFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK-SDEAISLL 354 (526)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 354 (526)
++++.+++.+.... +-+..+|+--...+.+.+ .+++++.+++++.+..+. |..+|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444332 334444444333344444 244555555555554433 44444444444444444 34555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC----
Q 043068 355 KEMRARGLKPTVFSFNAVFRILVEN--------------GELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAK---- 415 (526)
Q Consensus 355 ~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~---- 415 (526)
.++.+..+. |...|+.....+.+. +.++++++.+.+..... |+ ...|+-+-..+....
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 555444221 333444433333332 33566666666666522 33 333333322222221
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHcCC
Q 043068 416 ------GRMQDVEDLVDRMIRSGHNLDFTMYSCLLK---GYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 416 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+.++++++.++++++..+. +.-.+..++. +....|..+++...+.++++.+|
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3578888999999885443 3333322222 22246778899999999998886
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1e-06 Score=72.20 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+.+.|++++|+..|+++...++ .+...|..+..++...|++++|++.|++.++.. |.+...|..+..+|.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence 33444455555555555555555554442 334455555555555555555555555555544 444445555555555
Q ss_pred HcCChhhHHHHHHhC
Q 043068 206 KMGMIENAKKVFDVM 220 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~ 220 (526)
+.|++++|.+.|++.
T Consensus 116 ~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 116 RLKAPLKAKECFELV 130 (151)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555443
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=2e-06 Score=68.15 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 043068 128 KLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM 207 (526)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (526)
.+...+...|++++|+..|++.....+ .+...+..+...+...|++++|.+.+++..+.. |.+...+..+..++.+.
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHh
Confidence 333444444444444444444433321 223334444444444444444444444444432 33333444444444444
Q ss_pred CChhhHHHHHHh
Q 043068 208 GMIENAKKVFDV 219 (526)
Q Consensus 208 g~~~~A~~~~~~ 219 (526)
|++++|.+.|++
T Consensus 94 ~~~~~A~~~~~~ 105 (131)
T 2vyi_A 94 NKHVEAVAYYKK 105 (131)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=3.3e-07 Score=75.16 Aligned_cols=115 Identities=5% Similarity=-0.073 Sum_probs=87.3
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 353 LLKEMRARGLKP-TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 353 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
.|+++... .| +...+..+...+.+.|++++|+..|++..... | +...|..+-..+.. .|++++|...++++++
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 34444433 33 34566777888889999999999999888743 4 45555555555544 5999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 431 SGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 431 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
..+. ++..+..+..+|...|++++|...|++.++..+..|..
T Consensus 84 l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 84 MDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred cCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 7654 67888999999999999999999999999988866654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=1.5e-06 Score=82.04 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV 190 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 190 (526)
.+..+...|.+.|++++|+..|++.....+... ..+|..+..++.+.|++++|+..|++.++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 556667777777777777777777776653221 3566666666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV-KPNLLAYNTMINGFCKKGELEEA-KKCMNEMM 253 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 253 (526)
|.+..+|..+..+|...|++++|...|++. .+ +.+...+..+..++.+.|+.++| ..+|+.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666654 22 22344555555666666666555 33444443
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.1e-06 Score=68.36 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 043068 92 TPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVL 168 (526)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 168 (526)
...+..++..+.+.|++++|...+++.. +.+...+..+...|...|++++|++.|+++....+ .+...+..+..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 3455556666666666666666665432 22334555666666666666666666666665543 3455666666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 043068 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMG 208 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 208 (526)
.+.|++++|.+.|++..+.. |.+...+..+..++.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 66666666666666666554 444555555555555444
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=4.7e-05 Score=70.56 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
++++++.+.+.+...+. |..+|+-+-..+
T Consensus 209 ~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 209 LLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 55566666666655443 555555443333
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=1.6e-06 Score=70.99 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+...|++++|+..|+++...++ .+...|..+..++...|++++|++.|++.++.. |.+...+..+..+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence 34455555566666666666666555443 345555555666666666666666666665554 445555666666666
Q ss_pred HcCChhhHHHHHHhC
Q 043068 206 KMGMIENAKKVFDVM 220 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~ 220 (526)
..|++++|.+.|++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666665554
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=6.4e-06 Score=65.08 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.|..+...+.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4445555555556666666666555554222 44555555555555555555555555555443 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 043068 308 VVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~ 325 (526)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1.4e-05 Score=61.79 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.+..+...+...|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555544321 134444444445555555555555555544432 233444444444455
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 043068 308 VVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~ 325 (526)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555444443
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.8e-05 Score=77.57 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-C--H
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLN--GF---KDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA---NMNP-D--V 331 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-~--~ 331 (526)
++..+...|...|++++|..+++++... +. +....++..++..|...|++++|..++++.... ...| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 3444555555555555555555544322 10 111234445555555555555555555544331 0111 0 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 332 KSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444445555555555555444
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1e-05 Score=63.88 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGF 341 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (526)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..+++..+.++. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555666667777777777777666554 445666666667777777777777777766665433 456666666666
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 043068 342 CKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~ 360 (526)
...|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6677777777666666554
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=3e-06 Score=67.29 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC----C----HHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP----N----LLAYN 230 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~ 230 (526)
++..+...+.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|++.+++. .+.| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34445555555556666666665555554 445555555555555555555555555543 1111 1 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
.+..++...|++++|++.|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666554
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2.6e-06 Score=69.12 Aligned_cols=104 Identities=8% Similarity=-0.097 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043068 366 VFSFNAVFRILVENGELDRAILLLKQMPQMDCLP-NFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLL 444 (526)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 444 (526)
...+..+...+.+.|++++|+..|++..... | +...|..+...+.. .|++++|...+++.++.++. ++..+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDIN-EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 3455667778889999999999999888743 4 44555555555555 49999999999999987654 778888999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 445 KGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
.+|...|++++|.+.|++.++..+..|..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999999988766543
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=8.1e-06 Score=64.70 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
+..+...+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444444444444444444443211 2333444444444444444444444443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=7.8e-06 Score=68.09 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..+...|...|++++|++.|++.....+ .+...|..+..++.+.|++++|+..|++.++.. |.+...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 455666667777777777777777766653 356667777777777777777777777777765 56677777777777
Q ss_pred HHcCChhhHHHHHHhC
Q 043068 205 CKMGMIENAKKVFDVM 220 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~ 220 (526)
.+.|++++|.+.|++.
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 7777777777777665
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=5.6e-06 Score=67.11 Aligned_cols=91 Identities=10% Similarity=-0.069 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043068 127 SKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK 206 (526)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 206 (526)
..+...+...|++++|+..|+++...++ .+...|..+..++.+.|++++|+..|++.++.. |.+...+..+..++..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH
Confidence 3444455555666666666665555443 344555555555555666666666666555554 4455555555555555
Q ss_pred cCChhhHHHHHHhC
Q 043068 207 MGMIENAKKVFDVM 220 (526)
Q Consensus 207 ~g~~~~A~~~~~~~ 220 (526)
.|++++|.+.|++.
T Consensus 99 ~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 99 LGDLDGAESGFYSA 112 (142)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555543
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.6e-05 Score=61.39 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC 205 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (526)
+..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+++..+.. |.+...+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 33444444555555555555555544332 234444445555555555555555555555443 334444444555555
Q ss_pred HcCChhhHHHHHHhC
Q 043068 206 KMGMIENAKKVFDVM 220 (526)
Q Consensus 206 ~~g~~~~A~~~~~~~ 220 (526)
..|++++|.+.+++.
T Consensus 84 ~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 84 FLNRFEEAKRTYEEG 98 (118)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 555555555544443
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.4e-06 Score=71.07 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC---------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV 190 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 190 (526)
+..+...+...|++++|+..|++.....+... ...|..+..++.+.|++++|+..+++.++..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 44555666667777777777776665432111 1455556666666666666666666666554
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVK-PNLLAYNTMINGFCKKGELEEAK-KCMNEM 252 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~-~~~~~m 252 (526)
|.+..++..+..+|...|++++|.+.|++. ... .+...+..+..++...++.+++. ..|..|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666554 222 23444555555555544444444 333333
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.6e-05 Score=63.21 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 043068 225 NLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHK 300 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (526)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+...|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555566666666666666666666554 333 3445555555566666666666666555443 33445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 301 SMLKGLCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~ 325 (526)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555556666666666666555554
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=4.5e-06 Score=65.53 Aligned_cols=86 Identities=14% Similarity=0.006 Sum_probs=40.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
..+.+.|++++|+..|+++.+..+ .+...|..+..++...|++++|+..|++.++.. |.+...+..+..++.+.|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 334444445555555544444432 234444444444444555555555555444443 34444444444444444444
Q ss_pred hhHHHHHHh
Q 043068 211 ENAKKVFDV 219 (526)
Q Consensus 211 ~~A~~~~~~ 219 (526)
++|.+.+++
T Consensus 102 ~~A~~~~~~ 110 (121)
T 1hxi_A 102 NAALASLRA 110 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=1.6e-05 Score=66.08 Aligned_cols=98 Identities=9% Similarity=-0.006 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
...+..+...+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334555555555555566665555555554222 44555555555555555555555555555443 3344555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 043068 306 LCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~ 325 (526)
|...|++++|...|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=3.1e-06 Score=67.02 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CC----CCC----HHHHHH
Q 043068 161 YNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TV----KPN----LLAYNT 231 (526)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 231 (526)
+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|...+++. .. .++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3334444444444444444444444433 334444444444444444444444444443 10 111 334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (526)
+..++...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555544
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.4e-05 Score=64.92 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043068 365 TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMY 440 (526)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 440 (526)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+... |++++|...+++.++.... +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 3455666666677777777777777776663 354 34455555554443 7888888888877775433 56777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 441 SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
..+..+|...|++++|.+.+++.++..+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 7788888888888888888888888777555433
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=8.4e-06 Score=62.41 Aligned_cols=96 Identities=14% Similarity=-0.063 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD--NVSTHKSMLKG 305 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 305 (526)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 4444555555555555555555555544221 34445555555555555555555555555432 22 34445555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHc
Q 043068 306 LCVV-GKFDQAVGYLRNVMEA 325 (526)
Q Consensus 306 ~~~~-g~~~~A~~~~~~~~~~ 325 (526)
+.+. |++++|.+.++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555444
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=8.8e-06 Score=64.30 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444444444444444444444432 1133344444444444444444444444443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=1.4e-05 Score=64.08 Aligned_cols=92 Identities=8% Similarity=-0.076 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
.+..+...+...|++++|+..|++.....+ .+...|..+..++...|++++|...|++.++.. |.+...+..+..++
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence 344444444444445555544444444332 233444444444444444444444444444443 33444444444444
Q ss_pred HHcCChhhHHHHHHh
Q 043068 205 CKMGMIENAKKVFDV 219 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~ 219 (526)
...|++++|...|++
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 88 LEMESYDEAIANLQR 102 (137)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 444444444444443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=8e-06 Score=62.51 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC---CHHHHHHHHHH
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP---NLLAYNTMING 235 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~li~~ 235 (526)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.|++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 33344444444444444444444444443 334444444444444444444444444443 1111 23444444444
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 043068 236 FCKK-GELEEAKKCMNEMMNR 255 (526)
Q Consensus 236 ~~~~-g~~~~A~~~~~~m~~~ 255 (526)
+.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 4444 4444444444444443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2.8e-05 Score=76.12 Aligned_cols=194 Identities=9% Similarity=-0.045 Sum_probs=119.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGAC----------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV 194 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 194 (526)
..+.+.|++++|++.|.++........ ..++..+...|...|++++|.+.+.++.+...-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 334556677777777766655432211 1135667777777777777777777765421111121
Q ss_pred ----HHHHHHHHHHHHcCChhhHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--C
Q 043068 195 ----STYTTMIRGYCKMGMIENAKKVFDVM-------TVKPN-LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GC--R 258 (526)
Q Consensus 195 ----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~ 258 (526)
.+.+.+...+...|+.+.|.++++.. +..+. ..++..+...|...|++++|..++++.... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12333333444467777777776654 22222 446777888888888888888888877553 11 1
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 259 P-NELTYNAMIYGLCINGRVDEAKMLMAKMRLN----GFKDN--VSTHKSMLKGLCVVGKFDQAVGYLRNVME 324 (526)
Q Consensus 259 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (526)
+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346777888888889998888888877532 21111 23556666777778888888888777654
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=2.6e-05 Score=62.35 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043068 263 TYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 342 (526)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (526)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.++. +...+..+...|.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 33333334444444444444444433332 223333334444444444444444444444333222 3333444444444
Q ss_pred hcCChhHHHHHHHHH
Q 043068 343 KIGKSDEAISLLKEM 357 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m 357 (526)
..|++++|+..|++.
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444433
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=3.2e-06 Score=66.45 Aligned_cols=98 Identities=9% Similarity=-0.006 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
+..+...+.+.|++++|+..|++..+. .|+ ...|..+-..+.. .|++++|+..+++.++..+. +...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 455667788889999999999988874 354 4455555545444 49999999999999887654 778888899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCc
Q 043068 448 CEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
.+.|++++|+..+++.++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999998887744
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=7.4e-06 Score=67.49 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC----HH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENG-AC----LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD----VS 195 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 195 (526)
++..+...|...|++++|+..+++....... .+ ..++..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455666666667777777766665543211 11 135555666666666666666666665432100011 23
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHh
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~ 219 (526)
++..+...+...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444445555544444443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=3e-05 Score=61.23 Aligned_cols=98 Identities=15% Similarity=0.014 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 043068 371 AVFRILVENGELDRAILLLKQMPQMDCLPNF----VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLD---FTMYSCL 443 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 443 (526)
.+...+.+.|++++|.+.|+++.+.. |+. ..+..+...+... |++++|...++++++..+. + ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 44556677788888888888777632 332 2444444455554 8888888888888876443 3 5677888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 444 LKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
..+|.+.|++++|...|+++++..+..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 88888899999999999998888875543
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=3.8e-06 Score=65.50 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhH
Q 043068 136 RGNVKAAIFWFHQAKQIE--NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENA 213 (526)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 213 (526)
.|++++|+..|++....+ .+.+...+..+..++...|++++|++.|++.++.. |.+..++..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 466777777777776653 11235566667777777777777777777777665 56666777777777777777777
Q ss_pred HHHHHhC
Q 043068 214 KKVFDVM 220 (526)
Q Consensus 214 ~~~~~~~ 220 (526)
.+.|++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=2.3e-05 Score=64.49 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCR-PN----ELTYNAMIYGLCINGRVDEAKMLMAKMRLNG----FKD-NVS 297 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 297 (526)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 1244455555555566666655555543210 000 022
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 298 THKSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
++..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444455555555555544443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=0.00011 Score=57.80 Aligned_cols=92 Identities=10% Similarity=-0.030 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNE---LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDN---VSTHKSMLKG 305 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 305 (526)
+...+...|++++|...|++..+.... +. ..+..+..++.+.|++++|...|+++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455555555555555555554221 11 344445555555555555555555555432 222 3344445555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 043068 306 LCVVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~ 325 (526)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.9e-06 Score=65.42 Aligned_cols=97 Identities=8% Similarity=0.055 Sum_probs=67.4
Q ss_pred HcCCHHHHHHHHHHcccCCC-CcC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043068 378 ENGELDRAILLLKQMPQMDC-LPN-FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVEN 455 (526)
Q Consensus 378 ~~g~~~~a~~~~~~~~~~~~-~p~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 455 (526)
..|++++|+..|++..+.+. .|+ ...+..+...+.. .|++++|...++++++..+. +..++..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 35777888888888777421 133 3445555555544 48899999999888887655 67888888888999999999
Q ss_pred HHHHHHHHHHcCCCccchhhh
Q 043068 456 VMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 456 a~~~~~~m~~~~~~~~~~~~~ 476 (526)
|+..+++.++..+..+....+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999988888766655443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=2.4e-05 Score=77.23 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC--------------LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVV 190 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 190 (526)
.+..+...|.+.|++++|+..|+++....+... ...|..+..+|.+.|++++|+..|++.++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 556677778888888888888888776553221 4566666677777777777777777777665
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 043068 191 PPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAK 246 (526)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~ 246 (526)
|.+...|..+..+|...|++++|...|++. .+.| +...+..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777776665 3333 3345555666666666665554
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.12 E-value=4.6e-05 Score=75.16 Aligned_cols=138 Identities=7% Similarity=-0.059 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043068 226 LLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 305 (526)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 305 (526)
...|..+...+.+.|++++|+..|++.++....... + .-+... +.. +.....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 446677777778888888888888877764221110 0 000000 000 0012344445555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRA 385 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 385 (526)
|.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554332 44555555555555555555555555555431 11233445555555555555544
Q ss_pred H
Q 043068 386 I 386 (526)
Q Consensus 386 ~ 386 (526)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=1.4e-05 Score=79.16 Aligned_cols=121 Identities=15% Similarity=0.054 Sum_probs=90.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK 311 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (526)
+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566788899999999888877332 57788888888899999999999999888765 5667788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVING--FCKIGKSDEAISLLK 355 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 355 (526)
+++|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988886543 33445555544 778888999998888
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=5.2e-05 Score=62.81 Aligned_cols=68 Identities=6% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 402 VSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 402 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
..|..+...+... |++++|...+++.++..+. +...|..+..+|...|++++|...|++.++.++..+
T Consensus 64 ~~~~nla~~~~~~-~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNI-GDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3455555555554 9999999999999887544 788899999999999999999999999999988655
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=9.6e-05 Score=61.16 Aligned_cols=63 Identities=17% Similarity=0.055 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 297 STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
..|..+..+|.+.|++++|+..+++.++.++. +...|..+..+|...|++++|+..|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44555555555666666666666555555432 4555555555666666666666666555544
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=5.6e-05 Score=72.13 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLC 307 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (526)
.+..+...+.+.|++++|++.|++.++.- +.. ......+++. +.. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 46667777777888888888777776520 000 0000000000 000 122334444555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043068 308 VVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAI 386 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 386 (526)
+.|++++|+..+++.++.... +...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544322 44455555555555555555555555554431 113334444444444444444443
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.7e-05 Score=78.56 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=73.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 131 KAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
..+.+.|++++|++.|+++.+..+ .+..+|..+..++.+.|++++|++.+++.++.. |.+..++..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 344566777777777777766553 346677777777777777777777777777765 56677777777777777777
Q ss_pred hhHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043068 211 ENAKKVFDVM-TVKP-NLLAYNTMING--FCKKGELEEAKKCMN 250 (526)
Q Consensus 211 ~~A~~~~~~~-~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 250 (526)
++|.+.|++. ...| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777765 2122 22334444433 666677777777766
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=7.8e-05 Score=60.54 Aligned_cols=71 Identities=8% Similarity=-0.033 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCccc
Q 043068 403 SYNTIICGLCMAKGRMQDVEDLVDRMIRS-----GHNL-DFTMY----SCLLKGYCEEGNVENVMQIAHEMVTKKGRLLK 472 (526)
Q Consensus 403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 472 (526)
.|..+-.++... |++++|+..+++.++. .+.| +...| .....++...|++++|+..|++.++..+....
T Consensus 59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 565565565554 8888888888888775 1134 45678 89999999999999999999999988775544
Q ss_pred hh
Q 043068 473 LK 474 (526)
Q Consensus 473 ~~ 474 (526)
+.
T Consensus 138 ~~ 139 (159)
T 2hr2_A 138 ET 139 (159)
T ss_dssp CC
T ss_pred HH
Confidence 33
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=0.0003 Score=71.10 Aligned_cols=164 Identities=8% Similarity=0.040 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-
Q 043068 312 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGK----------SDEAISLLKEMRARGLKPTVFSFNAVFRILVENG- 380 (526)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 380 (526)
.++|++.++++.+.++. +..+|+.--..+...|+ ++++++.++++.+...+ +..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566666666666544 55556655555555555 66777777777665322 4556666666666666
Q ss_pred -CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------
Q 043068 381 -ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG-RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE-------- 450 (526)
Q Consensus 381 -~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 450 (526)
+++++++.++++.+.. .-+...|+.--..+... | ..+++.+.++++++..+. +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 5577777777776643 22444454443333333 5 667777777777766555 667777766666552
Q ss_pred ------CCHHHHHHHHHHHHHcCCCccchhhhHHHH
Q 043068 451 ------GNVENVMQIAHEMVTKKGRLLKLKNFLTRV 480 (526)
Q Consensus 451 ------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 480 (526)
+.++++++.+++.++.+|......+|+..+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 557888889989988888877766665433
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=6.4e-05 Score=71.76 Aligned_cols=119 Identities=9% Similarity=0.109 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----------------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQ----------------IENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV 189 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 189 (526)
+..+...+.+.|++++|++.|+++.+ ... .+..+|..+..++.+.|++++|++.+++.++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 34455566666666666666666554 111 234567777777777777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043068 190 VPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKP-NLLAYNTMINGFCKKGELEEAKK 247 (526)
Q Consensus 190 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~ 247 (526)
|.+...|..+..+|.+.|++++|.+.|++. ...| +...+..+...+...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777765 2233 45556666666666666665543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00026 Score=71.47 Aligned_cols=121 Identities=8% Similarity=-0.037 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 043068 226 LLAYNTMINGFCKKG--ELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCING-RVDEAKMLMAKMRLNGFKDNVSTHKSM 302 (526)
Q Consensus 226 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (526)
..+|+.-.-++.+.| +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. +.+...|+-.
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r 184 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHH
Confidence 334444444444444 345555555555554333 4444444444444444 4555555555554433 3344444444
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 043068 303 LKGLCVV--------------GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDE 349 (526)
Q Consensus 303 i~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (526)
...+.+. +.++++++.+++.+...+. |...|+.+-..+.+.+..++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4433332 3467777777777776544 66677777666666665433
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=3.1e-05 Score=73.08 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh------------------hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIENGACL------------------YSYNSLLGVLVRVNSIKLAEEFFHQIVK 186 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 186 (526)
.+..+...+.+.|++++|+..|++..... |+. ..|..+..++.+.|++++|+..|++.++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566677777888888888888876654 322 2566666677777777777777777776
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 043068 187 ENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-LLAYNTMING-FCKKGELEEAKKCMNEMMNR 255 (526)
Q Consensus 187 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 255 (526)
.. |.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..+... ....+..+.+.++|.+|...
T Consensus 259 ~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 65 556677777777777777777777777765 33333 2333333333 22334555666666666544
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=9.7e-05 Score=59.99 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC------Ch-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc-------
Q 043068 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGA------CL-----YSYNSLLGVLVRVNSIKLAEEFFHQIVKE------- 187 (526)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 187 (526)
+......+.+.|++++|+..|++..+..+.. +. ..|..+..++.+.|++++|+..|++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4456667778888999999888888776431 12 26667777777777777777777776654
Q ss_pred CCCCCCHHHH----HHHHHHHHHcCChhhHHHHHHh
Q 043068 188 NVVPPDVSTY----TTMIRGYCKMGMIENAKKVFDV 219 (526)
Q Consensus 188 ~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~ 219 (526)
. |.+...| .....++...|++++|+..|++
T Consensus 94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 3 3334444 4555555555555555555544
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=2.3e-05 Score=59.97 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC------HHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPD------VSTY 197 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 197 (526)
..+..+...+...|++++|++.|++.....+ .+...+..+..++.+.|++++|++.|++.++.. |.+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 3566777788888888888888888887664 457778888888888888888888888888765 444 6667
Q ss_pred HHHHHHHHHcCChhhHHHHHHhC
Q 043068 198 TTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
..+..++...|+.+.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 77777777778777777666654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=3e-05 Score=73.18 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043068 227 LAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 306 (526)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (526)
..+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34556666677777777777777776654 233221 112222333222111 12566677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHHH
Q 043068 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT-VFSFNAVFRI-LVENGELDR 384 (526)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 384 (526)
.+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766433 5667777777777777777777777776654 232 3334444333 233455666
Q ss_pred HHHHHHHccc
Q 043068 385 AILLLKQMPQ 394 (526)
Q Consensus 385 a~~~~~~~~~ 394 (526)
+.++|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777777765
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=7.3e-05 Score=73.74 Aligned_cols=121 Identities=10% Similarity=-0.028 Sum_probs=61.6
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CC----CCCHHHHHHHHHHHHHcCChhhHHHHHHhC--------C-CCCC-HHHHHH
Q 043068 168 LVRVNSIKLAEEFFHQIVKEN--VV----PPDVSTYTTMIRGYCKMGMIENAKKVFDVM--------T-VKPN-LLAYNT 231 (526)
Q Consensus 168 ~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~-~~~~~~ 231 (526)
+...|++++|+.++++.++.. .+ +....+++.|..+|...|++++|..++++. | ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666777766666655421 01 112345666666666666666666666553 1 1222 234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMNR-----GCR-PN-ELTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
|...|...|++++|+.++++.++. |.. |+ ..+.+.+..++...+.+++|+.+|..++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555432 211 11 1223334444445555555555555554
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=0.00041 Score=50.50 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRG 203 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 203 (526)
..+..+...+...|++++|+..|++.....+ .+...+..+..++.+.|++++|.+.|++..+.. |.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 3556677777788888888888888776653 356677778888888888888888888887765 6677777777766
Q ss_pred HHHcC
Q 043068 204 YCKMG 208 (526)
Q Consensus 204 ~~~~g 208 (526)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00014 Score=71.73 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=57.5
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCCCHHhHHHHH
Q 043068 238 KKGELEEAKKCMNEMMNR---GCRP----NELTYNAMIYGLCINGRVDEAKMLMAKMRLN-----G--FKDNVSTHKSML 303 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li 303 (526)
..|++++|+.++++.++. -+.| ...+++.|..+|...|++++|+.++++..+. | .+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555544332 0111 1234455555555555555555555544321 1 111223455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 304 KGLCVVGKFDQAVGYLRNVME-----ANMN-P-DVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
..|...|++++|+.++++..+ .|.. | ...+.+.+..++...+.+++|+.+|.++++
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555442 1221 1 122344455555566666666666666654
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00034 Score=56.07 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChhhH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCK----MGMIENA 213 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 213 (526)
++++|+++|++..+.+. +. .. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666666666655542 22 22 4445555555666666666665554 45555555555555 4555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043068 214 KKVFDVMTVKPNLLAYNTMINGFCK----KGELEEAKKCMNEMMNRG 256 (526)
Q Consensus 214 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 256 (526)
.++|++.-..-+...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554112344444455555554 455555555555554443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00079 Score=53.87 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHHcC
Q 043068 241 ELEEAKKCMNEMMNRG 256 (526)
Q Consensus 241 ~~~~A~~~~~~m~~~g 256 (526)
++++|++.|++..+.|
T Consensus 10 d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 10 DLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC
Confidence 3444444444444443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.75 E-value=0.00013 Score=56.26 Aligned_cols=77 Identities=8% Similarity=-0.010 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 141 AAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 141 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
+|++.|++.....+ .+...+..+...+...|++++|+..|++.++.. |.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666655543 345666666666777777777777777766665 556666666666676777777766666654
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=3.5e-05 Score=58.88 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC-CCCCC-------HHH
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM-TVKPN-------LLA 228 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~ 228 (526)
+...+..+...+.+.|++++|++.|++.++.. |.+...+..+..++.+.|++++|.+.+++. ...|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 34567777888888888888888888888876 677888888888888888888888888876 44454 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043068 229 YNTMINGFCKKGELEEAKKCMN 250 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~ 250 (526)
+..+..++...|+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5556666666666555554443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.0011 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 300 KSMLKGLCVVGKFDQAVGYLRNVM 323 (526)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~ 323 (526)
..+...+.+.|++++|...+++..
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 47 YNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.0005 Score=52.86 Aligned_cols=78 Identities=14% Similarity=-0.013 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 245 AKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVME 324 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (526)
|+..|++..+... .+...+..+...|...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555444322 134455555555555555555555555555443 33444555555555555555555555555443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00011 Score=59.43 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043068 135 DRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSI----------KLAEEFFHQIVKENVVPPDVSTYTTMIRGY 204 (526)
Q Consensus 135 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (526)
+.+.+++|++.+++..+..+ .+...|..+..++...+++ ++|+..|++.++.. |.+..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 34556777777777766664 4566666666666666554 47777777777765 66677777777777
Q ss_pred HHcC
Q 043068 205 CKMG 208 (526)
Q Consensus 205 ~~~g 208 (526)
...|
T Consensus 91 ~~lg 94 (158)
T 1zu2_A 91 TSFA 94 (158)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=0.00039 Score=56.28 Aligned_cols=92 Identities=7% Similarity=0.034 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043068 275 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGK----------FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI 344 (526)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (526)
+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.++. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 33444444444444433 3344444444444444433 34666666666665443 455566666666554
Q ss_pred C-----------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 043068 345 G-----------KSDEAISLLKEMRARGLKPTVFSFN 370 (526)
Q Consensus 345 g-----------~~~~A~~~~~~m~~~~~~p~~~~~~ 370 (526)
| ++++|++.|++..+. .|+...|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 3 556666666665554 44444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00044 Score=51.77 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 122 SDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
++..+..+...|...|++++|+..|+++.+.++ .+...|..+..+|...|++++|++.|++.++...-.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 344566666777777777777777777766653 3455666777777777777777777776664321123444444444
Q ss_pred HHHHH
Q 043068 202 RGYCK 206 (526)
Q Consensus 202 ~~~~~ 206 (526)
..+.+
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00074 Score=50.46 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 157 CLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
+...+..+...+.+.|++++|++.|++.++.. |.+..+|..+..+|.+.|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777777788888888888777775 566677777777777778877777777664
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.011 Score=54.94 Aligned_cols=131 Identities=12% Similarity=-0.007 Sum_probs=67.5
Q ss_pred CChhhHHHHHHHHHh--cC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc---CC--------hhhHHHHHHh
Q 043068 156 ACLYSYNSLLGVLVR--VN---SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKM---GM--------IENAKKVFDV 219 (526)
Q Consensus 156 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~--------~~~A~~~~~~ 219 (526)
.+..+|...+++... .+ ...+|..+|++.++.. |.....|..+.-+|... +. ...+.+....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 556677766655432 22 3577888888888876 66666666555555410 00 0011111111
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 220 M-TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 220 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
+ ..+.+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 113344455555444444555555555555555553 45445555555555555555555555555443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.055 Score=50.36 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHH
Q 043068 330 DVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSY 404 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 404 (526)
+..+|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 45555555555555566666666666665553 4555555555555556666666666665555 23555444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.0021 Score=47.61 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068 129 LIKAYGDRGNVKAAIFWFHQAKQIENGACLY-SYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY 197 (526)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 197 (526)
....+...|++++|+..|+++....+ .+.. .+..+..++...|++++|++.|++.++.. |.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 34456667777777777777776653 3455 67777777777777777777777777765 4444444
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.011 Score=43.25 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=58.1
Q ss_pred cCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcc
Q 043068 399 PNFVSYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLL 471 (526)
Q Consensus 399 p~~~~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 471 (526)
.+...+..+..+++...|. .++|..++++.++..+. +......+...+.+.|++++|+..|+++++.++..|
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4556666666666544232 79999999999998766 888999999999999999999999999999988643
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.046 Score=57.93 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=71.0
Q ss_pred HcCCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068 134 GDRGNVKAAIF-WFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN 212 (526)
Q Consensus 134 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 212 (526)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|++++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~----------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD----------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC----------HH---HHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC----------cc---hheehhhhcCCHHH
Confidence 34667777765 43111 1012225666666777777777655421 11 11233456677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 213 AKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 213 A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++.+....
T Consensus 671 A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766653 556777777777777777777777776642 23344444556666655544444443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.011 Score=43.48 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccch
Q 043068 411 LCMAKGRMQDVEDLVDRMIRSGHNLDFT-MYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKL 473 (526)
Q Consensus 411 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 473 (526)
+... |++++|.+.++++++..+. +.. .|..+..+|.+.|++++|++.|++.++.++..+..
T Consensus 10 ~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 10 LINQ-GDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3344 8899999999988886544 667 88888888999999999999999999888766543
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.024 Score=54.92 Aligned_cols=104 Identities=6% Similarity=-0.045 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC-----CC-CCC-HH
Q 043068 373 FRILVENGELDRAILLLKQMPQM---DCLPN----FVSYNTIICGLCMAKGRMQDVEDLVDRMIRS-----GH-NLD-FT 438 (526)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~ 438 (526)
+..+.+.|++++|..++++..+. -+.|+ ..+++.+...|... |++++|+.+++++++. |. .|+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 33455667777777777766531 11122 34556666665554 7888888877776642 22 222 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCccchhhhH
Q 043068 439 MYSCLLKGYCEEGNVENVMQIAHEMVT-----KKGRLLKLKNFL 477 (526)
Q Consensus 439 ~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 477 (526)
+++.|...|...|++++|+.++++.++ .|++.|.....+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 678888888888998888888887764 466666554443
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.093 Score=43.05 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 043068 99 TDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAE 178 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (526)
.+.....|+++.|.++.+.. .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556678888888887765 3566788888888888888888888877543 445666677778877777
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 179 EFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
++-+....+| -++.....+.-.|+++++.++|.+.+.-|.... .....|..+.|.++.+++
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 6666666555 244455556677888888888887763332211 112256667777776654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.66 E-value=0.0049 Score=59.66 Aligned_cols=48 Identities=6% Similarity=-0.186 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 240 GELEEAKKCMNEMMNR---GCRPN----ELTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4555555555554432 11111 234455555555555555555555544
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.024 Score=60.16 Aligned_cols=183 Identities=12% Similarity=0.021 Sum_probs=92.9
Q ss_pred HhcCChhHHHH-HHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHH
Q 043068 63 YEQTNPYHALF-FFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKA 141 (526)
Q Consensus 63 ~~~~~~~~Al~-~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 141 (526)
...++++.|.+ ++..+. +......++..+.+.|..++|..+.+. +. .-.......|++++
T Consensus 610 ~~~~~~~~a~~~~l~~i~-----------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-----------GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-----------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcCC-----------chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHH
Confidence 34678888876 442110 011135566667777777777766532 11 11223455677777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCCCHHHHHHHHHHHHHcCChhhHHH
Q 043068 142 AIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV------VPPDVSTYTTMIRGYCKMGMIENAKK 215 (526)
Q Consensus 142 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (526)
|.++.+.+ .+...|..+...+.+.++++.|++.|..+..-.. ...+..-...+.......|+++.|..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 77765432 3466777777777777777777777776532110 01122223333344444444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 043068 216 VFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNE----LTYNAMIYGLCINGRVDEAK 281 (526)
Q Consensus 216 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~ 281 (526)
.|...+ -+...+..|.+.+++++|..+-+. ..|.. .........+...|+.+.|.
T Consensus 745 ~~~~~g------~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 745 AYWIAG------DIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HHHHHT------CHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HHHHcC------CHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 444332 122344445555555555555443 23344 33334444455566654443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.012 Score=56.93 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=45.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcC---CCC----CHHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNG---FKD----NVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-----NMN-P-DVKSYEV 336 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~ 336 (526)
+.+.|++++|+.++++..+.. +.+ ...+++.++..|...|++++|+.+++++++. |.. | ...+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344555555555555554320 111 1234555555566666666666555554431 111 1 2234666
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043068 337 VINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~ 358 (526)
|...|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.51 E-value=0.15 Score=39.25 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=42.5
Q ss_pred cCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 207 MGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAK 286 (526)
Q Consensus 207 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (526)
.|++..+..-+-.++ .+.......++.+...|.-|+-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.+
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 344444444444433 1333444555555556666666666655433 2344555555566666666666666666666
Q ss_pred HHHcCC
Q 043068 287 MRLNGF 292 (526)
Q Consensus 287 ~~~~~~ 292 (526)
+-+.|+
T Consensus 151 AC~kG~ 156 (172)
T 1wy6_A 151 ACKKGE 156 (172)
T ss_dssp HHHTTC
T ss_pred HHHhhh
Confidence 555553
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.41 E-value=0.4 Score=42.82 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHc-CCH
Q 043068 242 LEEAKKCMNEMMNRGCRPN---ELTYNAMIYGLCIN-----GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVV-GKF 312 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 312 (526)
...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+....-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45667777777765 455 45777888888874 88888888888888765222467777778888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHH
Q 043068 313 DQAVGYLRNVMEANMN--PDVKSYE 335 (526)
Q Consensus 313 ~~A~~~~~~~~~~~~~--~~~~~~~ 335 (526)
+++.+.+++.+...+. |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887655 5544333
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.041 Score=41.08 Aligned_cols=76 Identities=7% Similarity=0.045 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchh
Q 043068 401 FVSYNTIICGLCMAKGRMQDVEDLVDRMIRSG------HNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLK 474 (526)
Q Consensus 401 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 474 (526)
...+..+-..+... |++..|...++.+++.- -.+...++..|..+|.+.|++++|...++++++..|..+...
T Consensus 5 a~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444555555554 88888888888877641 123567899999999999999999999999999998776654
Q ss_pred hhH
Q 043068 475 NFL 477 (526)
Q Consensus 475 ~~~ 477 (526)
+.+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.038 Score=41.26 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHH
Q 043068 124 FFISKLIKAYGDRGNVKAAIFWFHQAKQIE------NGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTY 197 (526)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 197 (526)
.....|...+.+.|+++.|..+|+.+.+.. .......+..+..++.+.|+++.|...+++..+.. |.+..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~ 83 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 334456666777777777777777765432 11234566777777777777777777777777654 4454443
Q ss_pred H
Q 043068 198 T 198 (526)
Q Consensus 198 ~ 198 (526)
+
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.24 E-value=0.0099 Score=57.51 Aligned_cols=99 Identities=7% Similarity=-0.010 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCccchhhhHHHHHH
Q 043068 415 KGRMQDVEDLVDRMIRS-----GHN-LD-FTMYSCLLKGYCEEGNVENVMQIAHEMVT-----KKGRLLKLKNFLTRVVD 482 (526)
Q Consensus 415 ~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~~~~~~ 482 (526)
.|++++|+.++++.++. |.. |+ ..+++.|..+|...|++++|+.++++.++ .|+..|+....+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~---- 386 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL---- 386 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH----
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH----
Confidence 47889999998887763 221 22 35789999999999999999999999875 4676776555443
Q ss_pred HHHHHHHHhcCccchhHHHHHHHHHHHHHHHhcCCc
Q 043068 483 ALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKR 518 (526)
Q Consensus 483 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 518 (526)
.+...+...+.|.++...+.+++.+.++.++..++
T Consensus 387 -nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 387 -KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred -HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34444556788999999999999999998866654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.061 Score=39.18 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCHHhHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 294 DNVSTHKSMLKGLCVVGK---FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 294 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
.+...+..+..++...++ .++|..++++.++.++. +......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444443333 45555555555555433 4455555555555555555555555555544
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.032 Score=44.57 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 043068 382 LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG---RMQDVEDLVDRMIRSGHNL--DFTMYSCLLKGYCEEGNVENV 456 (526)
Q Consensus 382 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 456 (526)
+..+.+-|.+..+.+. ++..+...+-.++++. + +++++..++++..+.+ .| +...+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3444555555544443 4555544444455554 4 5667888888877754 23 355666777788888888888
Q ss_pred HHHHHHHHHcCCCccchhhh
Q 043068 457 MQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 457 ~~~~~~m~~~~~~~~~~~~~ 476 (526)
++.++++++..|......+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 88888888888865544443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.39 Score=39.32 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEA 350 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (526)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 3455666666666666666666666665432 33444455556666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 043068 351 ISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRM 428 (526)
Q Consensus 351 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 428 (526)
.++-+.....| -++.....+...|+++++.++|.+.-. .|... .+.+..|-.+.|.++.+.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~-------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY-------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH-------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH-------HHHHHcCcHHHHHHHHHHh
Confidence 55555444433 123444445556777777776655433 11111 1223346666666665554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.11 Score=41.50 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 294 DNVSTHKSMLKGLCVVG---KFDQAVGYLRNVMEANMNP--DVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 294 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
++..+...+..++++.+ ++++++.+++++.+.+ .| +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444444444444444 3334555555544442 11 122333334444455555555555555544
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.23 E-value=3.4 Score=43.51 Aligned_cols=206 Identities=10% Similarity=0.103 Sum_probs=102.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCC
Q 043068 271 LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLK--GLCVVGKFDQAVGYLRNVMEANMNPDVKSY--EVVINGFCKIGK 346 (526)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~ 346 (526)
++-.|+-+....++..+.+.. +..+...++. ++...|+.+.+..+.+.+.... .|....- .++..+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344566666666666655431 2233333333 3345677777777777766531 2222211 234456777778
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 043068 347 SDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR-MQDVEDLV 425 (526)
Q Consensus 347 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~-~~~a~~~~ 425 (526)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-++... |. ..++..++
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~a-Gn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACA-GKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-CCCcHHHHHHH
Confidence 777777888777641 1122222333334444666666777776666543 35444433443333333 32 36777788
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH--HhCCC-------HHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHH
Q 043068 426 DRMIRSGHNLDFTMYSCLLKGY--CEEGN-------VENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLM 487 (526)
Q Consensus 426 ~~~~~~~~~p~~~~~~~l~~~~--~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 487 (526)
..+.. .+|..+-..-+.++ .-.|. +...++.+........ .....-|-+.++...+.+
T Consensus 653 ~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~-~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 653 DPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH-QEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHTT
T ss_pred HHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHhc
Confidence 88863 34544443333333 33343 2333333333333222 123334555555555554
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.64 E-value=0.25 Score=37.86 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHH
Q 043068 381 ELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRM---QDVEDLVDRMIRSGHN-LDFTMYSCLLKGYCEEGNVENV 456 (526)
Q Consensus 381 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~---~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a 456 (526)
.+..+.+-|.+....|. ++..+--.+..++.+. ... .++..+++...+.+.+ -.....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444433332 3433333333344333 333 3366667766654311 1334555666778888888888
Q ss_pred HHHHHHHHHcCCCccchhhh
Q 043068 457 MQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 457 ~~~~~~m~~~~~~~~~~~~~ 476 (526)
.+.++.+++..|....+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 88888888888766554444
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.62 E-value=0.32 Score=43.45 Aligned_cols=92 Identities=12% Similarity=0.035 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCh
Q 043068 277 VDEAKMLMAKMRLNGFKDN---VSTHKSMLKGLCVV-----GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKI-GKS 347 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 347 (526)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 344 56888899999984 99999999999999986544577788888888884 999
Q ss_pred hHHHHHHHHHHHCCCC--CCHHHHH
Q 043068 348 DEAISLLKEMRARGLK--PTVFSFN 370 (526)
Q Consensus 348 ~~A~~~~~~m~~~~~~--p~~~~~~ 370 (526)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999887555 5544333
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.37 E-value=0.55 Score=37.06 Aligned_cols=53 Identities=15% Similarity=0.032 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043068 310 GKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK 363 (526)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 363 (526)
++.++|.++|+.++..+-.. ...|......-.+.|+..+|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45556666666555442222 455555555555666666666666666555433
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.07 E-value=1.6 Score=33.75 Aligned_cols=140 Identities=17% Similarity=0.078 Sum_probs=99.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043068 169 VRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC 248 (526)
Q Consensus 169 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (526)
.-.|.+++..++..+..... +..-||.+|--....-+-+-..++++.+|.--|.. ..|++......
T Consensus 18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C 83 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVEC 83 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHH
Confidence 34588888888888888754 56667777766666777777788888775433432 23444444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 043068 249 MNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMN 328 (526)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (526)
+-.+- .+...+...++....+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|.+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 43331 14455667778888889999988888886443 3778888888999999999999999999998888865
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.51 E-value=5.5e-05 Score=71.69 Aligned_cols=231 Identities=13% Similarity=0.197 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 93 PCYTAITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
.+|..++.+..+.++..+|.+-+-+...+ ..|..+|....+.|.+++-+..+.-.++.. .+...=+.|+-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~Dp--s~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKADDP--SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCSCC--CSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCCCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 35778888888888888877766555433 346677888888899998888887655443 44555568888999988
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 173 SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 173 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
+..+-.+++. .||..-...+.+-|...|.++.|.-+|..+. -|.-|..++.+.|++..|.+.-++
T Consensus 131 rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 131 RLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred cHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 8776544431 3555556677788888888888888887662 122233344455555555443222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 043068 253 MNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVK 332 (526)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (526)
.-+..||-.+-.+|...+.+.-|.-.--.+.-. + .-...++..|-..|.+++.+.+++.-.... .....
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHH
Confidence 114455666666666666655554433333211 1 111224445555666666666655554321 22455
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLL 354 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~ 354 (526)
.|+-|.-.|++- ++++..+.+
T Consensus 265 mFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHH
Confidence 555555555543 344444333
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.42 E-value=0.4 Score=36.77 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHccc
Q 043068 330 DVKSYEVVINGFCKIGKSDE---AISLLKEMRARGLKP--TVFSFNAVFRILVENGELDRAILLLKQMPQ 394 (526)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 394 (526)
+..+--.+..++.+..+... ++.+++++.+.+ .| .....-.|.-++.+.|++++|.+.++.+++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34443344444444443333 444444444332 11 112222334445555555555555555554
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.23 E-value=0.74 Score=36.33 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHHcC
Q 043068 225 NLLAYNTMINGFCKKGEL------EEAKKCMNEMMNRGCRPNEL----TYNAMIY---GLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 225 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|.-+-- .+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 5555666655543 333210 1111000 1122367777777777776543
Q ss_pred CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 292 FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNP 329 (526)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 329 (526)
+-=..+|......-.+.|+++.|.+++...+..+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2226667777777777788888888888877776664
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.64 E-value=3.8 Score=39.55 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHH
Q 043068 66 TNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLL 115 (526)
Q Consensus 66 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (526)
++++.|+.-+....++.........+......++.++.+.++++...+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 66777777654443322222233344556677777787788777765544
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.37 E-value=3.7e-05 Score=72.86 Aligned_cols=264 Identities=15% Similarity=0.079 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 043068 123 DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIR 202 (526)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 202 (526)
+.+|+.|.++....+++.+|++.|-+. .|...|..++....+.|.+++-++.+.-..+. ..+...=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 457889999999999999999877432 45677889999999999999998887665544 335566678999
Q ss_pred HHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043068 203 GYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKM 282 (526)
Q Consensus 203 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (526)
+|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++..|.+
T Consensus 125 ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred HHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence 9999999887555443 5777777888999999999999988876543 24555667778888887765
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043068 283 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGL 362 (526)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 362 (526)
.-++ ..++.||..+-.+|...+++.-|.-.--.++-.. | -...++..|...|.+++-+.+++.-... -
T Consensus 192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl-E 259 (624)
T 3lvg_A 192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL-E 259 (624)
T ss_dssp TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence 4433 4577899999999999999887755444443221 1 1335677899999999999999987633 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccC-CCC------cCHHHHHHHHHHHHhcCCCHHHHH
Q 043068 363 KPTVFSFNAVFRILVENGELDRAILLLKQMPQM-DCL------PNFVSYNTIICGLCMAKGRMQDVE 422 (526)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~ll~~~~~~~g~~~~a~ 422 (526)
+.....|+-|.-.|++- ++++.++.++..-.+ +++ -....|.-++-.|+.- ..++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y-dE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY-EEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc-hhHHHHH
Confidence 45677888888887764 566777766654432 111 1223455555555543 5555443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.51 Score=48.61 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=43.6
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043068 412 CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMV 464 (526)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 464 (526)
|...|+++-|+++.++.+..-+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44569999999999999886433 78899999999999999999999888773
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.15 E-value=7.2 Score=42.90 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV----STHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV 337 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (526)
.-|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....+ ......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 44566666666777777776666655543212221 24566677777777777777666666544322 3445555
Q ss_pred HHHHHhcC------------ChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHc
Q 043068 338 INGFCKIG------------KSDEAISLLKEMRAR--GLKPTVFSFNAVFRILVENGELDRAIL-LLKQM 392 (526)
Q Consensus 338 i~~~~~~g------------~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~~ 392 (526)
+...|..| ..++..+++..--+. .....+..|..|-.-+...|++.+|-. +|+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 55544443 344555555432211 011112334444445556666665444 34444
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.39 E-value=8.3 Score=35.19 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHH
Q 043068 195 STYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKC----MNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~li~~ 270 (526)
.+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-+.+.++++|......++..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3556666678889999999887653 22234455665555444 3455556777787777777776
Q ss_pred HHHcCCHH-HHHHHHHHHH----HcC--CCCCHHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043068 271 LCINGRVD-EAKMLMAKMR----LNG--FKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCK 343 (526)
Q Consensus 271 ~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (526)
+.....-+ .=..+.+++. +.| ..-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 66544311 1122333332 222 23466777888999999999999887762 2333334566555555544
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 043068 344 IGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
.+...++ +... .-.+-.|.-.+++..|..+++...
T Consensus 180 ~~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4432211 1111 122233555677777777655543
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.39 E-value=1.2 Score=35.78 Aligned_cols=57 Identities=11% Similarity=-0.104 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcC-----CC---CHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 043068 94 CYTAITDVLLSHSLISIAASLLKNSN-----KL---SDF----FISKLIKAYGDRGNVKAAIFWFHQAK 150 (526)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~---~~~----~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (526)
++..-++.+...+.++.|.-+..... .+ ++. ++..+..++...|+|..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35555666667777777666544211 11 111 34455666666677777776666653
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.90 E-value=2.8 Score=32.28 Aligned_cols=79 Identities=8% Similarity=0.028 Sum_probs=54.0
Q ss_pred CcCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhh
Q 043068 398 LPNFVSYNTIICGLCMA--KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKN 475 (526)
Q Consensus 398 ~p~~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 475 (526)
.|+..+--.+..++.+. ..+..++..+++...+.+..-....+-.|.-++.+.|++++|.+..+.+++..|....+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34544433333333333 2345678888888887664334567777888999999999999999999999987665544
Q ss_pred h
Q 043068 476 F 476 (526)
Q Consensus 476 ~ 476 (526)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.86 E-value=18 Score=38.18 Aligned_cols=257 Identities=13% Similarity=0.061 Sum_probs=114.9
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C-----CCCHHHHHHHHHH
Q 043068 132 AYGDRGNVKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENV-V-----PPDVSTYTTMIRG 203 (526)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-----~~~~~~~~~li~~ 203 (526)
+....|+.++++..+......+...+ +..=..+.-+....|..+++..++...+.... + .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45556777777766665443110112 22222333334445555566666666554320 0 0112222333333
Q ss_pred HHHcCCh-hhHHHHHHhCCCCCCHH-H-HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHcCC
Q 043068 204 YCKMGMI-ENAKKVFDVMTVKPNLL-A-YN--TMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI--YGLCINGR 276 (526)
Q Consensus 204 ~~~~g~~-~~A~~~~~~~~~~p~~~-~-~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~ 276 (526)
++-.|.- +++.+.+..+-...+.. . .. +|...++..|+-+....++..+.+.. +......+. -++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 3333321 23333333331011211 1 12 22333445566666666666655431 222222222 23335677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043068 277 VDEAKMLMAKMRLNGFKDNVSTH--KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLL 354 (526)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (526)
.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777777777665431 2222111 123445566677666666766666532 213333333333444456666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHccc
Q 043068 355 KEMRARGLKPTVFSFNAVFRILVENGEL-DRAILLLKQMPQ 394 (526)
Q Consensus 355 ~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 394 (526)
+.+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6555432 33333333333333334332 456666666654
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.79 E-value=1.3 Score=45.73 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043068 307 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEM 357 (526)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 357 (526)
...|+++.|+++-++....-+. +-.+|..|...|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445555555555544443221 3445555555555555555555444443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.28 E-value=0.98 Score=42.85 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVM--TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMN-----RGCRPNELTY 264 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 264 (526)
+...++..+...|+.++|...+..+ ..+-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444566666777777777666655 2233556777777777777777777777776543 3777776653
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.20 E-value=2.7 Score=32.80 Aligned_cols=61 Identities=5% Similarity=0.025 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCccchhhh
Q 043068 416 GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRLLKLKNF 476 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 476 (526)
.+..++..+++...+.+..-.....-.|.-++.+.|++++|++..+.+++..|....+...
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3456778888888775544345566667778899999999999999999998866554444
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.63 E-value=1.7 Score=41.19 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 043068 301 SMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA-----RGLKPTVFS 368 (526)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 368 (526)
.++..+...|+.++|...+..+....+- +...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555666667777777666666655432 666677777777777777777776666533 366665543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.45 E-value=13 Score=40.83 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---------------------
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENG--------------------- 155 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------------- 155 (526)
.++..+.+.+..+.+..+..-. +.++..--.+..+|...|++++|.+.|++... ++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 3444555566666665544332 33444334555666677777777777765421 110
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHhCC-CCCCHHH
Q 043068 156 --ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDV----STYTTMIRGYCKMGMIENAKKVFDVMT-VKPNLLA 228 (526)
Q Consensus 156 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 228 (526)
.-..-|..++..+.+.+.++.+.++-...++... +.+. ..|..+.+.+...|++++|...+-.++ ..--...
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 0123478888899999999999988887776541 2222 257888999999999999988887762 1223556
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 043068 229 YNTMINGFCKKGELEEAK 246 (526)
Q Consensus 229 ~~~li~~~~~~g~~~~A~ 246 (526)
...++..+|..|..+.-.
T Consensus 974 Lr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhCCChhhhh
Confidence 777888888877765543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.03 E-value=3.1 Score=30.13 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
+.=+..+.++.+...+.-|++.+..+.+++|.+.+++..|.++|+.++.+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHH
Confidence 445667777777777878888888888888888888888888888887653 23334565554
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.95 E-value=23 Score=34.11 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----HcCChh--hHHHHHHhCC-CC-----C-
Q 043068 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYC----KMGMIE--NAKKVFDVMT-VK-----P- 224 (526)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~--~A~~~~~~~~-~~-----p- 224 (526)
......++..|...|+++...+.+..+.+..+. .......+++.+. .....+ .-..+.+... +. -
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence 445556666677777777666666555543321 1222223333222 223222 1222333221 00 0
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC
Q 043068 225 --NLLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPN---ELTYNAMIYGLCINGRVDEAKMLMAKMRL----NGFK 293 (526)
Q Consensus 225 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~ 293 (526)
.......|...+...|++.+|.+++.++... |.... ...+...++.|...+++.+|..++.++.. ...+
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 1223456778888899999999999887643 22211 24566778888899999999998888642 2222
Q ss_pred CC--HHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 043068 294 DN--VSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKSYEVV----INGFCKIGKSDEAISLLKEMRARGLKPTV 366 (526)
Q Consensus 294 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 366 (526)
|+ ...+...+..+...+++.+|.+.|.++.+. ...-|...+..+ +....-.+....--.++........-++.
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l 293 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKL 293 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccccc
Confidence 22 235566777788889999888888777643 111122222211 11111222222222233333222223466
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHccc
Q 043068 367 FSFNAVFRILVEN--GELDRAILLLKQMPQ 394 (526)
Q Consensus 367 ~~~~~li~~~~~~--g~~~~a~~~~~~~~~ 394 (526)
..|..++.+|... .+++...+.|.....
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 7788888888764 467777777766544
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.35 E-value=9.7 Score=29.30 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHH
Q 043068 328 NPDVKSYEVVINGFCKIGKS---DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFV 402 (526)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 402 (526)
.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 34555544455555555433 34566666665443111223344455566666666666666666665 335543
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.45 E-value=9.7 Score=27.62 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
+.-+..+-++.+......|++.+..+.+++|.+..++.-|.++++-+..+-...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~ 78 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 78 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 566777788888888889999999999999999999999999999888776544
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.11 E-value=14 Score=32.45 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043068 306 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR 360 (526)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 360 (526)
..+.|++++|++....-++..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44566666666666666665443 5666666666666667777776666666554
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.11 E-value=24 Score=31.90 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=65.9
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043068 100 DVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEE 179 (526)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (526)
+..+..|++-+|.+.+ .++..-|.+.+++++|++++..- ...+.+.|+...|-+
T Consensus 21 ~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~D 74 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTD 74 (312)
T ss_dssp HHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred HHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHH
Confidence 3344556666666654 46677777788888887776532 123344455444443
Q ss_pred H----HHHHHHcCCCCCCHHHHHHHHHHHHHcCC--------hhhHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043068 180 F----FHQIVKENVVPPDVSTYTTMIRGYCKMGM--------IENAKKVFDVMT--VKPNLLAYNTMINGFCKKGELEEA 245 (526)
Q Consensus 180 ~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 245 (526)
+ .+-..+.+ ++++......++..+..... +.+|+++-.+.+ ..-+......+...|.+.|++.+|
T Consensus 75 La~llvev~~~~~-~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 75 LIFYLLEVYDLAE-VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 3 22222333 56666666666655544322 122233322221 123556666677777777777777
Q ss_pred HHHH
Q 043068 246 KKCM 249 (526)
Q Consensus 246 ~~~~ 249 (526)
...|
T Consensus 154 ~~H~ 157 (312)
T 2wpv_A 154 ERYF 157 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.08 E-value=38 Score=34.13 Aligned_cols=250 Identities=11% Similarity=-0.013 Sum_probs=121.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH-
Q 043068 98 ITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKL- 176 (526)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 176 (526)
-...+.+.+++.....++.. .+.+...-.....+....|+..+|......+=..+ ......+..++..+.+.|.+..
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHH
Confidence 34556667777776665554 34444445556666667777666666555543333 2345566666666666554422
Q ss_pred -HHHHHHHHHHcCC----------CCCCHHHH-HHHHHHHHHcCChhhHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 043068 177 -AEEFFHQIVKENV----------VPPDVSTY-TTMIRGYCKMGMIENAKKVFDVMTVKPNLLA---YNTMINGFCKKGE 241 (526)
Q Consensus 177 -A~~~~~~~~~~~~----------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~li~~~~~~g~ 241 (526)
...=++.+...|. ++++.... ..++..+ .+...+....... .++... +...+.-+.+ .+
T Consensus 156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~--~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT--GATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS--CCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc--CCChhhHHHHHHHHHHHHh-cC
Confidence 2233333333330 11111111 1111111 1122222222221 122211 1112222233 36
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHcCCHHHHHH
Q 043068 242 LEEAKKCMNEMMNRGCRPNELTYNAMIYG----LCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVG 317 (526)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (526)
.+.|...+....+.+. .+......+-.. ....+...++...+...... ..+.....-.+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 7788888877765432 233332222222 22334244555556554433 2333334444455556788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043068 318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 359 (526)
.|+.|...... .....--+..++...|+.++|..+|+.+..
T Consensus 307 ~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88777553221 344444566677778888888888777653
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.90 E-value=9.8 Score=30.59 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043068 231 TMINGFCKKGELEEAKKCMNEMMNRG-CRPNE-------LTYNAMIYGLCINGRVDEAKMLMAKM 287 (526)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (526)
.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34455555666666665555543321 12221 23444555666666666666666665
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.09 E-value=7.1 Score=34.26 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=24.8
Q ss_pred HHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 376 LVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 376 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
..+.|+++++++....-++.. +-|...-..++..+|.. |+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~-G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCID-GDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 334455555555554444432 22333333444444544 555555555555444
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.73 E-value=17 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 043068 308 VVGKFDQAVGYLRNVMEA 325 (526)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~ 325 (526)
..+++..|...|-+....
T Consensus 220 ~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 220 AVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp GTSCHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHhcc
Confidence 456666666666655443
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.48 E-value=19 Score=33.35 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043068 368 SFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG--RMQDVEDLVDRMIRSGHNLDFTMYSCLLK 445 (526)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 445 (526)
....++.-|...|+.++|.+.++++..-.+.+ ......+..++-+. + ..+...+++..+...|+-+.......+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~-~~~~re~~~~LL~~L~~~glls~~q~~~Gf-- 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLEST-GESAFKMILDLLKSLWKSSTITIDQMKRGY-- 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHTTCSCHHHHHHHH--
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccC-chHHHHHHHHHHHHHHHCCCCCHHHHHHHH--
Confidence 35778888999999999999999987522222 23344444454332 2 245677788888777765433333322
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHH
Q 043068 446 GYCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLM 487 (526)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 487 (526)
.++++.+-+...+.|.+..+++.++..++..
T Consensus 295 -----------~~vl~~ldDl~lDiP~A~~~la~~varai~~ 325 (358)
T 3eiq_C 295 -----------ERIYNEIPDINLDVPHSYSVLERFVEECFQA 325 (358)
T ss_dssp -----------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 2355556566666788888887777766543
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.92 E-value=37 Score=31.87 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcCC
Q 043068 452 NVENVMQIAHEMVTKKG 468 (526)
Q Consensus 452 ~~~~a~~~~~~m~~~~~ 468 (526)
..++++..+-+|+..|.
T Consensus 329 s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 45666666666666553
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.78 E-value=38 Score=31.84 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=92.7
Q ss_pred HHHHHHHHcCChhhHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 043068 199 TMIRGYCKMGMIENAKKVFDVM-----TVKPN---LLAYNTMINGFCKKGELEEAKKCMNEMMNR--GCRPNELTYNAM- 267 (526)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l- 267 (526)
-++..|...|++.+|.+++.++ ..... ...|-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455555555555555555544 11101 223444455566666666666666555432 122333222111
Q ss_pred ---HHHHH-HcCCHHHHHHHHHHHHHcCCC---C---CHHhHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHH
Q 043068 268 ---IYGLC-INGRVDEAKMLMAKMRLNGFK---D---NVSTHKSMLKGLCVVGKFDQAVGYLR-NVMEANMNPDVKSYEV 336 (526)
Q Consensus 268 ---i~~~~-~~g~~~~a~~~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~ 336 (526)
...+. ..+++..|...|-+..+.--. | +...|..+.... .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 11233 456666666665554321000 1 111222222211 122222212211 1111112345555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 043068 337 VINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKG 416 (526)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g 416 (526)
++.+| ..+++.+..++++.... .+..|......+ ..+.+ .-...++ .++.+ +=+..++..+...+. =
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~-~Ir~~~L---~~i~~---pYsrIsl~~iA~~l~---l 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD-TMLEQNL---CRIIE---PYSRVQVAHVAESIQ---L 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH-HHHHHHH---HHHHT---TCSEEEHHHHHHHHT---C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH-HHHHHHH---HHHhH---hhceeeHHHHHHHHC---c
Confidence 66665 45677776666665433 233344321111 11100 0001111 11111 112344555554442 2
Q ss_pred CHHHHHHHHHHHHHCC
Q 043068 417 RMQDVEDLVDRMIRSG 432 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~ 432 (526)
..++++..+-+|+..|
T Consensus 329 s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 PMPQVEKKLSQMILDK 344 (394)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6788888888888775
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.81 E-value=19 Score=27.75 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 043068 417 RMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 470 (526)
+.-+..+-++.+...+..|++.+..+-+++|.+..|+.-|.++|+-...+-...
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 555677777777778889999999999999999999999999999888877644
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.83 E-value=15 Score=28.28 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 043068 138 NVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMI 201 (526)
Q Consensus 138 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 201 (526)
+.=+..+-++.+...+.-|++.+....+++|.+.+++..|.++|+.++.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 444677777788788888899999999999999999999999999887654 33444566555
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.54 E-value=22 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 043068 338 INGFCKIGKSDEAISLLKEMRA 359 (526)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~m~~ 359 (526)
.-++.+.|++++|.+..+.+.+
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.23 E-value=44 Score=30.14 Aligned_cols=165 Identities=9% Similarity=0.039 Sum_probs=96.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHH----HHHHHhcCCCCChhhHHHHHHHHHhcC
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFW----FHQAKQIENGACLYSYNSLLGVLVRVN 172 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g 172 (526)
.+..-|.+.+++++|.+++..+ ...+.+.|+...|.++ .+-..+.+.+++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4455577788999999887543 3334455666655543 333444566677777777777766543
Q ss_pred Chh-HHHHHHHHHH----HcCC-CCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHH
Q 043068 173 SIK-LAEEFFHQIV----KENV-VPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKK---GELE 243 (526)
Q Consensus 173 ~~~-~A~~~~~~~~----~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~ 243 (526)
.-+ .=.++.++++ +.|. ...+...+..+...|.+.|++.+|...|- .+...+...+..++--+... |...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 211 1123333333 2321 23478899999999999999999999886 33222455555555444333 3332
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043068 244 EAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMR 288 (526)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (526)
++ +...-. .+-.|.-.|+...|..+++...
T Consensus 186 e~--------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 186 TV--------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred hH--------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 21 111112 2224556788888888888664
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.21 E-value=27 Score=33.31 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--H
Q 043068 196 TYTTMIRGYCKMGMIENAKKVFDVM-----TVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNR---GCRPNELTY--N 265 (526)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~--~ 265 (526)
+...+...|.+.|++++|.+.+.++ +...-...+-.++..+...+++..+...+++.... +..|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455556666666666666666555 22223445556666666667777666666665432 222222110 0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRL 289 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~ 289 (526)
.-...+...+++..|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123346778887777766644
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.39 E-value=23 Score=25.54 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 043068 346 KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 346 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|..+-.. +. |..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rl-Gl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HL-GLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hc-ccHHHHHHHH
Confidence 46667666666665542 22222222345667788888877776665 4787777776643 44 7777777777
Q ss_pred HHHHHCC
Q 043068 426 DRMIRSG 432 (526)
Q Consensus 426 ~~~~~~~ 432 (526)
.++-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.80 E-value=24 Score=25.49 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 043068 346 KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLV 425 (526)
Q Consensus 346 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~ 425 (526)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|..+-.. +. |..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rl-Gl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RL-GLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HH-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hc-ccHHHHHHHH
Confidence 45666666666665532 22221222344667778888777776665 4777777766543 44 7777777666
Q ss_pred HHHHHCC
Q 043068 426 DRMIRSG 432 (526)
Q Consensus 426 ~~~~~~~ 432 (526)
.++-..|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665544
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.75 E-value=23 Score=29.46 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 043068 416 GRMQDVEDLVDRMIRSGHNL 435 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p 435 (526)
|++.+|.++|+.-++.+-.|
T Consensus 129 g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 129 QFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHHcCCcc
Confidence 44444444444444444443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.48 E-value=32 Score=24.81 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=51.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
...++|..+-+-+...+ . ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++...+.+
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45677777777776654 2 22222233445667788888888877776 678777766543 467777777777777
Q ss_pred HHHcC
Q 043068 252 MMNRG 256 (526)
Q Consensus 252 m~~~g 256 (526)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 76665
No 272
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.10 E-value=90 Score=29.84 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhC
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVM 220 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 220 (526)
|+..--+..|.-+.+.| ..+..---.+++.-...|+.+-.++++.+=
T Consensus 409 gq~splL~YF~~Ll~~g--~Ln~~ESlEl~r~vL~q~r~~llekWl~e~ 455 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQG--QLNKYESLELCRPVLQQGRKQLLEKWLKED 455 (494)
T ss_dssp TSCCHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhccC--ccchHHhhHHhHHHHhccHHHHHHHHHhcC
Confidence 34444444444444444 334433334444444455555555555443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.84 E-value=33 Score=24.77 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
...++|..+-+-+...+ . ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++...+.+
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45677777777766654 2 22222233445667788888888887776 677777766543 466777777777767
Q ss_pred HHHcC
Q 043068 252 MMNRG 256 (526)
Q Consensus 252 m~~~g 256 (526)
+...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 76654
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.69 E-value=59 Score=32.96 Aligned_cols=93 Identities=10% Similarity=0.206 Sum_probs=52.1
Q ss_pred ChHHHHHHHHh---cCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHH-----------HHHhcC
Q 043068 54 GSNIVTKVIYE---QTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAAS-----------LLKNSN 119 (526)
Q Consensus 54 ~~~~l~~~l~~---~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~ 119 (526)
.-..++..+.+ ..|+..|+.+|-.+-... +-.....++..+.++....+.|+.-.. ++++..
T Consensus 355 N~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~----g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~ 430 (661)
T 2qx5_A 355 RFANILANYTKSFRYSDPRVAVEYLVLITLNE----GPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQ 430 (661)
T ss_dssp CHHHHHHHHHTTTTTTCHHHHHHHHHGGGGSC----CHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTC
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhh
Confidence 33444544444 689999999998773111 101112346667777777777765542 222221
Q ss_pred C---C-C-HHHHH----HHHHHHHcCCCHHHHHHHHHHHH
Q 043068 120 K---L-S-DFFIS----KLIKAYGDRGNVKAAIFWFHQAK 150 (526)
Q Consensus 120 ~---~-~-~~~~~----~li~~~~~~g~~~~A~~~~~~~~ 150 (526)
. . + ..... .....+...|++++|+.+|+-+.
T Consensus 431 ~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 431 PLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhc
Confidence 1 1 2 11222 33445667899999998887654
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.91 E-value=80 Score=28.78 Aligned_cols=168 Identities=12% Similarity=0.092 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHhHHHHH
Q 043068 228 AYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKML----MAKMRLNGFKDNVSTHKSML 303 (526)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~li 303 (526)
+|.++..=|.+.+++++|++++..-- ..+.+.|+...|-++ ++-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34456666888899999988764422 123344554444333 34445567777777777777
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 304 KGLCVVGKFD-QAVGYLRNVM----EAN--MNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRIL 376 (526)
Q Consensus 304 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 376 (526)
..+.....-+ .-..+.++++ +.| ..-|......+...|.+.+++.+|...|- .|..++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7766554311 1122222222 122 33467777888899999999999888873 23343446666555555
Q ss_pred HHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043068 377 VENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR 430 (526)
Q Consensus 377 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 430 (526)
...+.. ..++...-..++.-+|. +++..|..+++...+
T Consensus 178 ~~~~~~--------------~e~dlfiaRaVL~yL~l--~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDES--------------HTAPLYCARAVLPYLLV--ANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCG--------------GGHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHhcCC--------------ccHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 444431 13556667777766653 789999888776664
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.80 E-value=45 Score=25.47 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAK-GRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
...++.-|...|+.++|.+.++++..-.+. .......+..++-+.. ...+.+..++..+.+.|+-+...... |
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~----G- 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR----G- 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH----H-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH----H-
Confidence 456677777788888888888877531111 1223333333432220 11345666666666665543322222 2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHH
Q 043068 448 CEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDAL 484 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 484 (526)
-.++++.+-+...+.|.+..+++.++..+
T Consensus 84 --------f~~v~~~l~Dl~lDiP~a~~~l~~~v~~a 112 (129)
T 2nsz_A 84 --------YERIYNEIPDINLDVPHSYSVLERFVEEC 112 (129)
T ss_dssp --------HHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred --------HHHHHhhChHhhcCccchHHHHHHHHHHH
Confidence 23344555555666777777766555544
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.75 E-value=13 Score=32.54 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCC
Q 043068 374 RILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTM--YSCLLKGYCEEG 451 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g 451 (526)
...+..|+.+-+..+++.....--..+....+.+..+ +.. |......++++.+++.|..++... -...+...++.|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~-~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHC-SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHc-cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 3345567776666555542111001122223333333 233 555555666667777766554321 112233445566
Q ss_pred CHHHHHHH
Q 043068 452 NVENVMQI 459 (526)
Q Consensus 452 ~~~~a~~~ 459 (526)
+.+-+..+
T Consensus 231 ~~~~v~~L 238 (285)
T 1wdy_A 231 HLGLVQRL 238 (285)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66544333
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.95 E-value=46 Score=25.38 Aligned_cols=111 Identities=9% Similarity=0.139 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCccc-hhhhHHH
Q 043068 403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN--VENVMQIAHEMVTKKGRLLK-LKNFLTR 479 (526)
Q Consensus 403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~-~~~~~~~ 479 (526)
....++.-|... |+.++|.+.++++..-.+. ...+...+..++.+.++ .+.+..++..+.+.|.-.+. ...-+..
T Consensus 9 ki~~ll~EY~~~-~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 9 EIDMLLKEYLLS-GDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 86 (129)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 345677777765 9999999999998421111 23455666667777643 57888999999888763332 1111222
Q ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHhcCCcccce
Q 043068 480 VVDALLLMWIVTGGSWISRFVFVHQVVVIMERTVEDGKRSECL 522 (526)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 522 (526)
+.+.+-.. .++.=..-..+-.++.+++.+|.++.++
T Consensus 87 v~~~l~Dl-------~lDiP~a~~~l~~~v~~ai~~g~l~~~~ 122 (129)
T 2nsz_A 87 IYNEIPDI-------NLDVPHSYSVLERFVEECFQAGIISKQL 122 (129)
T ss_dssp HHHHHHHH-------HHHSTTHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHhhChHh-------hcCccchHHHHHHHHHHHHHCCCCCHHH
Confidence 22222111 1222222233345667777888776654
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.91 E-value=1.3e+02 Score=30.34 Aligned_cols=324 Identities=8% Similarity=0.018 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043068 106 SLISIAASLLKNSNKLS--DFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQ 183 (526)
Q Consensus 106 ~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 183 (526)
....++..++++.+... ...-+.-+..+.+.+++...+..+.. ...+...-.....+....|+..+|......
T Consensus 53 ~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 53 QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 36778888887765432 22334556667778888877775432 224555555667778888998888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCChhhHH------------------HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 043068 184 IVKENVVPPDVSTYTTMIRGYCKMGMIENAK------------------KVFDVMTVKPNLL-AYNTMINGFCKKGELEE 244 (526)
Q Consensus 184 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~------------------~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~ 244 (526)
+-..| ......+..++..+.+.|.+.... .+...+ .++.. ....++..+.+ ...
T Consensus 128 lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l--~~~~~~~a~~~~al~~~---p~~ 200 (618)
T 1qsa_A 128 LWLTG--KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM--PADYQTIASAIISLANN---PNT 200 (618)
T ss_dssp HHSCS--SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CGGGHHHHHHHHHHHHC---GGG
T ss_pred HHhCC--CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC--CHHHHHHHHHHHHHHhC---hHh
Confidence 77776 334456777777777766554322 111111 11111 11222221111 111
Q ss_pred HHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHhHHHH----HHHHHHcCCHHHHHH
Q 043068 245 AKKCMNEMMNRGCRPNELT---YNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSM----LKGLCVVGKFDQAVG 317 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~ 317 (526)
+...... ..++... +...+.-..+ .+.+.|...+....+.. ..+......+ +......+...++..
T Consensus 201 ~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 201 VLTFART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp HHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 2111111 1223221 2222333333 37788988888876543 2333333222 223333443456666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCC
Q 043068 318 YLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDC 397 (526)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 397 (526)
.+....... .+.....-.+....+.|+++.|...|+.|..... ....-.--+.+++.+.|+.++|..+|+.+..
T Consensus 274 ~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--- 347 (618)
T 1qsa_A 274 WRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ--- 347 (618)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Confidence 666655443 3333344444445577999999999988865321 1233334556677888999999999988875
Q ss_pred CcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC---CH-H--HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043068 398 LPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNL---DF-T--MYSCLLKGYCEEGNVENVMQIAHEMVTK 466 (526)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~-~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 466 (526)
+. +|..++.+ .+. |..-.. . . ..+.+ .. . .-...+..+...|....|...+..+.+.
T Consensus 348 -~~--~fYg~lAa-~~L-g~~~~~-~----~--~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 348 -QR--GFYPMVAA-QRI-GEEYEL-K----I--DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp -SC--SHHHHHHH-HHT-TCCCCC-C----C--CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CC--ChHHHHHH-HHc-CCCCCC-C----C--CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 21 34444433 222 421000 0 0 00111 00 0 1123345678899999999999888765
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.62 E-value=66 Score=26.74 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 240 GELEEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
+...++.++|..|...|+--. ..-|......+...|++.+|..+|..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345566677777766655433 3345556666666677777777776666655444
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.19 E-value=37 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=21.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 043068 343 KIGKSDEAISLLKEMRARGLKPTVFS--FNAVFRILVENGELDRAILLLK 390 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 390 (526)
..+......++++.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444555555555554443211 1122333445566555544444
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.68 E-value=56 Score=25.81 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMA-KGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGY 447 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 447 (526)
...++.-|...|+.++|.+.++++..-.+. .......+..++-+. ....+.+..++..+.+.|+-+...... +
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~----G- 85 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR----G- 85 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH----H-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH----H-
Confidence 456777777788888888888887531111 122333333343221 112345666666666665543322222 2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHH
Q 043068 448 CEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALL 485 (526)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 485 (526)
-.++++.+-+...+.|.+..+++.++..+.
T Consensus 86 --------f~~vl~~ldDl~lDiP~A~~~la~~v~~ai 115 (152)
T 2ion_A 86 --------YERIYNEIPDINLDVPHSYSVLERFVEECF 115 (152)
T ss_dssp --------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred --------HHHHHHhChHhccCccchHHHHHHHHHHHH
Confidence 234445555556667777777776666553
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.62 E-value=1.3e+02 Score=29.36 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCh--hhH-HHHHHHHHhcCChhHHHHHHHHHHHc
Q 043068 125 FISKLIKAYGDRGNVKAAIFWFHQAKQIEN-GACL--YSY-NSLLGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
.+|.+++.|...+.+++|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+....+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 567777777777777777777776531100 0110 111 12345555667777777777766654
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.28 E-value=48 Score=26.19 Aligned_cols=48 Identities=6% Similarity=0.199 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 421 VEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 421 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+.++|..|..+|+-- -+..|......+...|++++|.++|+.-++.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 556666666555432 234555566666666666666666666666654
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.90 E-value=79 Score=28.42 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043068 369 FNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGR--MQDVEDLVDRMIRSGHNLDFTMYSCLLKG 446 (526)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 446 (526)
...++.-|...|+.++|.+.++++..-.+.+ ......+..++-+. ++ .+...+++..+.+.|+-+...... +
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~-~~~~re~~~~LL~~L~~~~~ls~~q~~~----G 242 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLEST-GESTFKMILDLLKSLWKSSTITVDQMKR----G 242 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCC-SSHHHHHHHHHHHHHHHHCSSCHHHHHH----H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHCCCCCHHHHHH----H
Confidence 4566777777888888888888876411111 22233333343221 12 344556666666655543322222 2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCccchhhhHHHHHHHHHHH
Q 043068 447 YCEEGNVENVMQIAHEMVTKKGRLLKLKNFLTRVVDALLLM 487 (526)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 487 (526)
-.++++.+-+...+.|.+..+++.++..+...
T Consensus 243 ---------f~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~ 274 (307)
T 2zu6_B 243 ---------YERIYNEIPDINLDVPHSYSVLERFVEECFQA 274 (307)
T ss_dssp ---------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 23445555566666788878877776666444
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.80 E-value=61 Score=25.98 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 421 VEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 421 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+.++|..|..+|+-- -+..|......+...|++.+|.++|+.-++.+-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555566666655532 234555566666666666666666666666654
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.24 E-value=1.3e+02 Score=32.12 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHHcC
Q 043068 262 LTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV----STHKSMLKGLCVVG 310 (526)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 310 (526)
.-|..++..+-+.+.++.+.++-+.+.+.--..|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788888888899999888888887764323333 25666666666544
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.03 E-value=54 Score=27.62 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=9.1
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 043068 237 CKKGELEEAKKCMNEMMNRG 256 (526)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g 256 (526)
+..|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455544444444444433
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.14 E-value=64 Score=25.45 Aligned_cols=66 Identities=6% Similarity=0.176 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCc
Q 043068 403 SYNTIICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN--VENVMQIAHEMVTKKGRL 470 (526)
Q Consensus 403 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~ 470 (526)
....++.-|... |+.++|.+.++++..-.+. ...+...+..++.+.++ .+.+..++..+.+.+.-.
T Consensus 11 ki~~lL~EY~~~-~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLS-GDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 355677777765 9999999999998421111 23455666667776533 567888999998887633
No 290
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=50.54 E-value=64 Score=29.87 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043068 333 SYEVVINGFCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~m~ 358 (526)
....++.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45678888888899999988888876
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.17 E-value=42 Score=29.66 Aligned_cols=47 Identities=6% Similarity=-0.001 Sum_probs=22.6
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 043068 100 DVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWF 146 (526)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 146 (526)
...+..|..+.+..+++.+...+...-.+.+...+..|+.+-+..++
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 33455677777777777654322111112233334556655444333
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.86 E-value=95 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043068 232 MINGFCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~ 254 (526)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556666777777766665543
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.76 E-value=2e+02 Score=30.71 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 043068 97 AITDVLLSHSLISIAASLLKNSNKLSDFFISKLIKAYGDRGNVKAAIFWFHQAK 150 (526)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (526)
.++..+...+..+-|.++..-. +.++..--.+..+|...|++++|.+.|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~-~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566667777777776655433 3455544467778888888888888888754
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.12 E-value=1.6e+02 Score=28.78 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHhcCCCCH-----H---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 043068 93 PCYTAITDVLLSHSLISIAASLLKNSNKLSD-----F---FISKLIKAYGDRGNVKAAIFWFHQAKQIEN 154 (526)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 154 (526)
..++.+++.|...+.++.|..++.+...+.. . .+-.+.+.+.-.+++.+|.+.+..+...-+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3688889999999999999999998764421 1 223567778889999999999998876543
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.24 E-value=1.3e+02 Score=24.63 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHcCC
Q 043068 193 DVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 193 ~~~~~~~li~~~~~~g~ 209 (526)
+...-...+.++.+.|+
T Consensus 63 ~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD 79 (211)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 33344444444444443
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.15 E-value=69 Score=24.90 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 043068 165 LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGM 209 (526)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 209 (526)
+..+...+..-.|.++++.+.+.+ ...+..|..--+..+...|-
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCC
Confidence 333333444444555555554443 22334444444444444443
No 297
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.99 E-value=87 Score=28.19 Aligned_cols=102 Identities=11% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHcc-cCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 043068 352 SLLKEMRARGLKPTV---FSFNAVFRILVENGELDRAILLLKQMP-QMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDR 427 (526)
Q Consensus 352 ~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~ 427 (526)
.+.+.+.+.|..++. .-.+ .+...+..|..+.+..+++.-. .-. ..|..-.+.|..+ +.. |..+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A-~~~-g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLA-VEL-KLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCC-HHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHHHH-HHT-TCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCC-HHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHHHH-HHc-CCHH----HHHH
Confidence 344445566655432 2222 3344567788777666654321 100 1222223344433 343 7654 3445
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 428 MIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 428 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+++.|..++..+ .+...++.|+.+ +.+-+++.|-
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA 325 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGA 325 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTC
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcC
Confidence 566777766543 333445667654 4455667765
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.66 E-value=97 Score=26.24 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043068 419 QDVEDLVDRMIRSGHNL-DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKGR 469 (526)
Q Consensus 419 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 469 (526)
+++..+|..|...|+-- -...|......+...|++++|..+|+.-++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 56778888888887754 3557888888888899999999999998888863
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.52 E-value=1.4e+02 Score=24.45 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 043068 121 LSDFFISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTM 200 (526)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 200 (526)
.++..-...+..+.+.|.. .+...+.++.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHH
Confidence 3444444445555555553 33333333332 145555556666666666543 3333444433 3466666777
Q ss_pred HHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043068 201 IRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA 280 (526)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 280 (526)
+.++.+.|+.+....+.+.+. .++...-...+.++.+.|+. ++...+.++.+ .++...-...+.++.+.+. .++
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALK-DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHHHhCcHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 777777776544444444443 45665555666666666653 34444444442 3455555556666666665 334
Q ss_pred HHHHHHHHH
Q 043068 281 KMLMAKMRL 289 (526)
Q Consensus 281 ~~~~~~~~~ 289 (526)
...+..+.+
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.42 E-value=1.5e+02 Score=24.62 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 043068 240 GELEEAKKCMNEMMNRG 256 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~g 256 (526)
.+.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555555
No 301
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.71 E-value=15 Score=23.63 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCCH
Q 043068 172 NSIKLAEEFFHQIVKENVVPPDV 194 (526)
Q Consensus 172 g~~~~A~~~~~~~~~~~~~~~~~ 194 (526)
-+++.|...|.++...|.|||+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 47888888888887777777754
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.16 E-value=26 Score=29.58 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=10.0
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 043068 444 LKGYCEEGNVENVMQIAHEM 463 (526)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~m 463 (526)
+....+.|+.+-+.-+++..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 33445566665555444433
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.98 E-value=2.5e+02 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043068 257 CRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLN 290 (526)
Q Consensus 257 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (526)
+..+......++.. -.|+..+++.+++.+...
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 33455566666554 467888888888777543
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.10 E-value=2.2e+02 Score=25.69 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 139 VKAAIFWFHQAKQIENGAC--LYSYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 139 ~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
....+++-.-+-....+|. .-+....+....|.+++..|..+-+++++.+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444433333332 3345566677778888888888888888765
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.47 E-value=1.4e+02 Score=23.43 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 245 AKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
+.++|..|..+|+--. ..-|......+...|++.+|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666665554432 3334555555556666666666666655554444
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.35 E-value=1.1e+02 Score=23.82 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
.++..+...+..-.|.++++.+.+.+ ...+..|..-.+..+...|-+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcE
Confidence 34444444444555555555555443 233444444445555555543
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.33 E-value=98 Score=24.64 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHcCCh
Q 043068 163 SLLGVLVRVNSIKLAEEFFHQIVKE--NVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
.++..+...+..-.|.++++.+.+. + ...+..|..--+..+...|-+
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3444444545555555555555544 3 223444444445555555543
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.64 E-value=2e+02 Score=24.29 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 243 EEAKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
+++.++|..|...|+--. ...|......+...|++.+|..+|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344455555555544322 2334444445555555555555555555444333
No 309
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.52 E-value=92 Score=25.27 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068 205 CKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGELEEAKKCMNEMMNRGCRPN 260 (526)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (526)
++.|+++....+++.-....+...-.+.+...+..|+.+.-.++.+-+++.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 45566665555554421111101112333344445555555556666666665544
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.82 E-value=52 Score=27.61 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=9.1
Q ss_pred HhCCCHHHHHHHHHhcC
Q 043068 103 LSHSLISIAASLLKNSN 119 (526)
Q Consensus 103 ~~~~~~~~a~~~~~~~~ 119 (526)
++.|.++.+..+++.+.
T Consensus 17 ~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHcCC
Confidence 44555555555555443
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.72 E-value=1.8e+02 Score=23.19 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 043068 245 AKKCMNEMMNRGCRPN-ELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKD 294 (526)
Q Consensus 245 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 294 (526)
+.++|..|..+|+--. ...|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5556666666654433 2334555555556666666666666666555444
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.02 E-value=2.7e+02 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhCCC
Q 043068 197 YTTMIRGYCKMGMIENAKKVFDVMTV 222 (526)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (526)
...++.-|...|+.++|...+++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45677888888899999999988863
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.45 E-value=3.6e+02 Score=25.87 Aligned_cols=149 Identities=16% Similarity=0.077 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 043068 56 NIVTKVIYEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSN---KLSDFFISKLIKA 132 (526)
Q Consensus 56 ~~l~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~ 132 (526)
+.+.-+.....+++.|+++-.+.- .+-.-..|..-.+.+...|++++|..+....+ ..++.+++.+-..
T Consensus 333 ~ivpyi~~~l~n~~lA~~lA~R~~--------LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~v 404 (494)
T 1bpo_A 333 NIIPYITNVLQNPDLALRMAVRNN--------LAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSV 404 (494)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHTT--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTS
T ss_pred cchhhhhhccCCHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcC
Confidence 455555556788999988887763 22233457777888999999999999887554 4566676655554
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhh
Q 043068 133 YGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIEN 212 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 212 (526)
=...|+..--+..|.-+...|- .+..---.+++.-...|+.+...+ .++++.+..+...-..+ +..+..-
T Consensus 405 p~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llek----Wl~e~KL~~SEeLGDlv-----k~~d~~L 474 (494)
T 1bpo_A 405 PAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEK----WLKEDKLECSEELGDLV-----KSVDPTL 474 (494)
T ss_dssp CCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHH----HHHHTCSCCCHHHHHHH-----HHHCSHH
T ss_pred CCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHHHHhccHHHHHHH----HHhcCCccccHHhHhhh-----hhcCHHH
Confidence 4455666667777777776663 444433445555556666554443 33444455555433322 4446666
Q ss_pred HHHHHHhCCC
Q 043068 213 AKKVFDVMTV 222 (526)
Q Consensus 213 A~~~~~~~~~ 222 (526)
|..+|.+.+.
T Consensus 475 Al~IY~~a~~ 484 (494)
T 1bpo_A 475 ALSVYLRANV 484 (494)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHcCC
Confidence 7777766653
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.24 E-value=1.8e+02 Score=24.43 Aligned_cols=23 Identities=4% Similarity=0.193 Sum_probs=15.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 043068 165 LGVLVRVNSIKLAEEFFHQIVKE 187 (526)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~~~~~ 187 (526)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34566777777777777777654
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.59 E-value=79 Score=27.06 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=12.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 043068 445 KGYCEEGNVENVMQIAHEMVT 465 (526)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~ 465 (526)
...++.|+.+-+..++++-..
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCC
Confidence 344567777766665554433
No 316
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.58 E-value=4.4e+02 Score=26.65 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC----C-----------CHHHHHHHHHHHHHC-----CC
Q 043068 374 RILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAK----G-----------RMQDVEDLVDRMIRS-----GH 433 (526)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----g-----------~~~~a~~~~~~~~~~-----~~ 433 (526)
.-+...|++++|+.+|.-..+.. --....|.++.-..... + -...|.++.+..... .+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYD--IVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Confidence 35667888888888888776521 11233444443222111 1 123444444442221 22
Q ss_pred CC-CHHHHHHHHHH-----HHhCCCHHHHHHHHHHH
Q 043068 434 NL-DFTMYSCLLKG-----YCEEGNVENVMQIAHEM 463 (526)
Q Consensus 434 ~p-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 463 (526)
.+ +..|+..|+.. +.+.|+++.|++.++++
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 11 33455555543 37899999999988875
No 317
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=30.13 E-value=5.1e+02 Score=27.33 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHH
Q 043068 162 NSLLGVLVRVNS---IKLAEEFFHQIVKEN---VVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMING 235 (526)
Q Consensus 162 ~~li~~~~~~g~---~~~A~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 235 (526)
..++...|+.|. .+.|.+.|++..... .++||..... -+..- |.-++-..+++......+..--..++.+
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~v---y~~~~-g~~~~~~~l~~~y~~~~~~~ek~~ll~a 759 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAV---FAVGA-QSTEGWDFLYSKYQFSLSSTEKSQIEFA 759 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHH---HHHHT-TSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhE---EEEec-CCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345556666665 456777777776543 2455543211 11111 4444433444444333444555667777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043068 236 FCKKGELEEAKKCMNEMMN 254 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~ 254 (526)
++...+.....++++....
T Consensus 760 L~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 760 LCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HTTCCCHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHhC
Confidence 7777777777777776665
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.03 E-value=1.1e+02 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=7.5
Q ss_pred HHcCCCHHHHHHHHH
Q 043068 133 YGDRGNVKAAIFWFH 147 (526)
Q Consensus 133 ~~~~g~~~~A~~~~~ 147 (526)
.+..|+.+-+..+++
T Consensus 38 A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 38 AIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344566655444443
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.61 E-value=67 Score=30.34 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=7.7
Q ss_pred HHHcCChhhHHHHHHh
Q 043068 204 YCKMGMIENAKKVFDV 219 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~ 219 (526)
.++.|+.+.+..+++.
T Consensus 120 A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 120 AAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3444555555544443
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.47 E-value=2.4e+02 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 043068 240 GELEEAKKCMNEMMNRGCRP 259 (526)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p 259 (526)
.+.+.|+-.+-+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555443
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.66 E-value=1.4e+02 Score=24.71 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=8.9
Q ss_pred HHHHcCChhhHHHHHHh
Q 043068 203 GYCKMGMIENAKKVFDV 219 (526)
Q Consensus 203 ~~~~~g~~~~A~~~~~~ 219 (526)
..++.|+.+.+..+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34455555555555554
No 322
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.31 E-value=2.7e+02 Score=23.22 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043068 239 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYG 270 (526)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (526)
..+.+.|+-.+-+|++.|-.|.-..-..++-+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666666655443333333333
No 323
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.88 E-value=2.3e+02 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcc
Q 043068 371 AVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
.++.-|...|+.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444444455555555555443
No 324
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.76 E-value=2e+02 Score=23.90 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=89.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 043068 268 IYGLCINGRVDEAKMLMAKMRLNGFKDNVST--HKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKS--YEVVINGFCK 343 (526)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 343 (526)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4456678999988888887776665444321 12344555667776544 44445555443211 1123334456
Q ss_pred cCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHH
Q 043068 344 IGKSDEAISLLKEMRARGLKP---TVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQD 420 (526)
Q Consensus 344 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~ 420 (526)
.|+.+-+..+++.....+..+ +....+. +...+..|+.+-+..+++.-.......+....+.+..+ +.. |+.+-
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A-~~~-~~~~~ 165 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA-VEN-NSLSM 165 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH-HHT-TCHHH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH-HHc-CCHHH
Confidence 677766666655443211111 1122222 33345667776666555543321111102222333333 343 77654
Q ss_pred HHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043068 421 VEDLVDRMIRSGHNLDFTM--YSCLLKGYCEEGNVENVMQIAHEMVTKKG 468 (526)
Q Consensus 421 a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 468 (526)
+. .+++.|..++... -...+...++.|+.+ +.+.+++.|.
T Consensus 166 v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga 207 (241)
T 1k1a_A 166 VQ----LLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGA 207 (241)
T ss_dssp HH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTC
T ss_pred HH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCC
Confidence 44 4445565543211 112233345567755 4444555665
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.67 E-value=2.2e+02 Score=21.92 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
+.+.|.+.+.. -..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34455554332 334444444455555666666666655444444444444555555544
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.64 E-value=2.3e+02 Score=22.05 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGEL 382 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 382 (526)
+.+.|.++ ...-..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-+
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44555553 3334455566666666677777777776665555555555555666665544
No 327
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.14 E-value=88 Score=25.31 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=8.3
Q ss_pred HhCCCHHHHHHHHHhc
Q 043068 103 LSHSLISIAASLLKNS 118 (526)
Q Consensus 103 ~~~~~~~~a~~~~~~~ 118 (526)
+..|+.+.+..+++..
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3455555555555543
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.96 E-value=50 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043068 348 DEAISLLKEMRARGLKPTVFSFNAVFRIL 376 (526)
Q Consensus 348 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 376 (526)
++|.+.|.+|++..-.+...||...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666665443333445666666665
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.92 E-value=1.9e+02 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.301 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcc
Q 043068 371 AVFRILVENGELDRAILLLKQMP 393 (526)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~~~ 393 (526)
.++.-|...|+.++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34444445555555555555543
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.87 E-value=1.3e+02 Score=23.35 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 165 LGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
+..+...+ .-.|.++++.+.+.+ ...+..|..--+..+...|-+
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTA-SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcE
Confidence 33333334 445555665555443 233444444445555555543
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.72 E-value=2.1e+02 Score=21.67 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 164 LLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 164 li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
++..+...+ ..-.|.++++.+.+.+ ...+..|..--+..+...|-+
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 344444444 4555666666665544 233444544555555555543
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.47 E-value=1.5e+02 Score=19.33 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 266 AMIYGLCINGRVDEAKMLMAKMRLNG 291 (526)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (526)
.+++.++...-.++++..++++.+.|
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.25 E-value=2.3e+02 Score=23.33 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=10.2
Q ss_pred HHHhCCCHHHHHHHHHh
Q 043068 101 VLLSHSLISIAASLLKN 117 (526)
Q Consensus 101 ~~~~~~~~~~a~~~~~~ 117 (526)
..++.|+.+.+..+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34456666666666665
No 334
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.08 E-value=2.4e+02 Score=31.21 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=16.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 043068 343 KIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVEN 379 (526)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 379 (526)
.++++..|++++.++.+. +|+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHc
Confidence 345555555555555443 24444454444444333
No 335
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.68 E-value=3.7e+02 Score=24.18 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043068 160 SYNSLLGVLVRVNSIKLAEEFFHQIVKEN 188 (526)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 188 (526)
+....+....+.+++..|..+-+++++.+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45556667777888888888888887765
No 336
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.64 E-value=1.5e+02 Score=22.92 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=8.5
Q ss_pred HHHcCChhhHHHHHHh
Q 043068 204 YCKMGMIENAKKVFDV 219 (526)
Q Consensus 204 ~~~~g~~~~A~~~~~~ 219 (526)
.++.|+.+.+..+++.
T Consensus 15 A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 15 AAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHTCHHHHHHHCCT
T ss_pred HHHhCCHHHHHHHHHc
Confidence 3445565555555543
No 337
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.28 E-value=2.5e+02 Score=26.15 Aligned_cols=265 Identities=13% Similarity=0.145 Sum_probs=119.1
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC
Q 043068 99 TDVLLSHSLISIAASLLKNSNKLSDF--FISKLIKAYGDRGNVKAAIFWFHQAKQIENGAC---LYSYNSLLGVLVRVNS 173 (526)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 173 (526)
+...++.|..+.+.-+++.+...+.. .-.+.+...+..|+.+-+.-+++ .|..++ .... +.+...++.|+
T Consensus 51 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~-t~L~~A~~~g~ 125 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE----NNANPNLATTAGH-TPLHIAAREGH 125 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCC-CHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh----CCCCCCCCCCCCC-cHHHHHHHcCC
Confidence 34456678899888888876543211 11123334456677655444443 343232 2222 23445566788
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 043068 174 IKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLL--AYNTMINGFCKKGELEEAKKCMNE 251 (526)
Q Consensus 174 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~ 251 (526)
.+.+..+++.-.... ..+..-+ +.+...+..|+.+-+..+++.- ..++.. .-.+.+...+..|+.+ +++.
T Consensus 126 ~~~v~~Ll~~~~~~~--~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~----~v~~ 197 (437)
T 1n11_A 126 VETVLALLEKEASQA--CMTKKGF-TPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLD----IVKL 197 (437)
T ss_dssp HHHHHHHHHTTCCSC--CCCTTSC-CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSCCCHHHHHHHTTCHH----HHHH
T ss_pred HHHHHHHHhCCCCCc--CCCCCCC-CHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHH----HHHH
Confidence 776665554321111 1111111 2344556778877666666542 122111 0112233445566654 4445
Q ss_pred HHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043068 252 MMNRGCRPNELTY--NAMIYGLCINGRVDEAKMLMAKMRLNGFKDNV---STHKSMLKGLCVVGKFDQAVGYLRNVMEAN 326 (526)
Q Consensus 252 m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 326 (526)
+.+.|..++...+ ...+...+..|+.+-+..++ +.|..++. ... +.+...+..|..+-+.. +.+.+
T Consensus 198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~----Ll~~~ 268 (437)
T 1n11_A 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL----QYGGSANAESVQGV-TPLHLAAQEGHAEMVAL----LLSKQ 268 (437)
T ss_dssp HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHH----HHTTT
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCC-CHHHHHHHCCCHHHHHH----HHhcC
Confidence 5555544432211 12334455677765554444 33333221 111 23334456666554433 33444
Q ss_pred CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043068 327 MNPDV---KSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTV---FSFNAVFRILVENGELDRAILLLKQ 391 (526)
Q Consensus 327 ~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 391 (526)
..++. ...+. +...+..|..+-+..++ +.|..++. ...+. +...+..|+.+-+.-+++.
T Consensus 269 ~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 269 ANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTP-LHVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHT
T ss_pred CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhc
Confidence 33221 11122 22334556655443333 33333221 11222 3334566777655555443
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.25 E-value=1.9e+02 Score=22.91 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCH
Q 043068 323 MEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRAR--GLKPTVFSFNAVFRILVENGEL 382 (526)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~ 382 (526)
.+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|.---+..+...|-+
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666543 3445566666666677777777777665 5455555555555666666643
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.19 E-value=2.3e+02 Score=21.45 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIG-KSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGEL 382 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 382 (526)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44455554433 334455555554 5666777777777665555555555555555555543
No 340
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.68 E-value=1.6e+02 Score=22.90 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 043068 164 LLGVLVRVN-SIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMI 210 (526)
Q Consensus 164 li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (526)
++..+...+ ..-.|.++++.+.+.+ ...+..|..--+..+...|-+
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 333443333 4445666666665544 233445555555555555544
No 341
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.21 E-value=1.5e+02 Score=23.73 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=5.6
Q ss_pred HHHHHHHHHcCC
Q 043068 457 MQIAHEMVTKKG 468 (526)
Q Consensus 457 ~~~~~~m~~~~~ 468 (526)
.++.+.+++.|.
T Consensus 158 ~~~v~~Ll~~ga 169 (201)
T 3hra_A 158 QDIVKLLMENGA 169 (201)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 344444455443
No 342
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.13 E-value=1.9e+02 Score=28.55 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChh
Q 043068 132 AYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIE 211 (526)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (526)
.++...+........++...+-+-.+..--..++..|.+.|-.+.|.++++.+-.+- -.+...+ ..+..|.|+|+++
T Consensus 490 ~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~--l~~g~~g-eAL~~f~rA~~~~ 566 (570)
T 3f3f_C 490 ALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM--LSAHNII-ESIANFSRAGKYE 566 (570)
T ss_dssp HHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--HHCccHH-HHHHHHHHcCChh
Q ss_pred hHHH
Q 043068 212 NAKK 215 (526)
Q Consensus 212 ~A~~ 215 (526)
.+..
T Consensus 567 ~Vk~ 570 (570)
T 3f3f_C 567 LVKS 570 (570)
T ss_dssp ----
T ss_pred hccC
No 343
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.07 E-value=4.3e+02 Score=23.33 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=26.8
Q ss_pred HhcCChhHHHHHHHHhcCCCCCCCCCcCChhhHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 043068 63 YEQTNPYHALFFFNWASNPNPNPNKYHHTTPCYTAITDVLLSHSLISIAASLLKNSNK 120 (526)
Q Consensus 63 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (526)
.+.|+.+....+.+.-.. ++...... -++. ++.-+..|..+.+.-+++.+..
T Consensus 33 v~~g~~~~V~~LL~~Gad--vn~~~~~~---g~Tp-Lh~A~~~g~~~iv~~Ll~~ga~ 84 (337)
T 4g8k_A 33 VQNEDVDLVQQLLEGGAN--VNFQEEEG---GWTP-LHNAVQMSREDIVELLLRHGAD 84 (337)
T ss_dssp HHTTCHHHHHHHHHHTCC--TTCCCTTT---CCCH-HHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHCCCC--CCccCCCC---CcCH-HHHHHHcCCHHHHHHHHHcCCc
Confidence 446777666666654322 21100000 0112 3344567888888888887653
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.03 E-value=3.7e+02 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=7.8
Q ss_pred HHhcCChhHHHHHHHHHH
Q 043068 341 FCKIGKSDEAISLLKEMR 358 (526)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~ 358 (526)
|.+.|.+++|.+++++..
T Consensus 124 Ciek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHTTCHHHHHHHHHHHS
T ss_pred HHHhcchHHHHHHHHHHh
Confidence 344444444444444443
No 345
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.84 E-value=5.2e+02 Score=24.14 Aligned_cols=166 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043068 162 NSLLGVLVRVNS---IKLAEEFFHQIVKENVV-PPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFC 237 (526)
Q Consensus 162 ~~li~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~ 237 (526)
..++...|..|. .++|.+.|++....+.. +.....-..+...-.+. -++-..+++......+..--..++.+++
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s~~~~ek~~ll~aL~ 278 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFSLSSTEKSQIEFALC 278 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcCCCHHHHHHHHHHcC
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHcCCCCCHHhHHHHHHHHHHcCCHHH
Q 043068 238 KKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMA---KMRLNGFKDNVSTHKSMLKGLCVVGKFDQ 314 (526)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (526)
...+.....++++......+.........+........-.+.|.+++. +.....+..+...+..++......-..++
T Consensus 279 ~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~~ 358 (419)
T 3rjo_A 279 RTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRT 358 (419)
T ss_dssp TCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCCCHH
Q ss_pred HHHHHHHHHHcCCCC
Q 043068 315 AVGYLRNVMEANMNP 329 (526)
Q Consensus 315 A~~~~~~~~~~~~~~ 329 (526)
-.+-++...+....+
T Consensus 359 ~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 359 RLEEVKGFFSSLKEN 373 (419)
T ss_dssp HHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCccc
No 346
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.75 E-value=3.5e+02 Score=22.95 Aligned_cols=42 Identities=10% Similarity=0.277 Sum_probs=27.5
Q ss_pred hhHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043068 211 ENAKKVFDVMTVK-PNLLAYNTMINGFCKKGELEEAKKCMNEM 252 (526)
Q Consensus 211 ~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (526)
+.+.++|+.+... ....+|.-++..+.+...+-+++..|+.+
T Consensus 213 ~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 213 EHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 4566777777322 23456777777777777777777777654
No 347
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.73 E-value=3.3e+02 Score=21.81 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHhCCCCCCHHHHHHHHHH
Q 043068 156 ACLYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMING 235 (526)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 235 (526)
++...-...+.++.+.+..+. ...+..+.. .++...-...+.++.+.|+.+....+.+.+. .++...-...+.+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~a 130 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERA-VEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPLIKALK-DEDWFVRIAAAFA 130 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 344444455555555555433 233333332 2455555666666666665444334444333 3454444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 043068 236 FCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGR 276 (526)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (526)
+.+.++. ++...+.++.. .++...-...+.++.+.|.
T Consensus 131 L~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 131 LGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5555542 23333333332 2344444445555555544
No 348
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.69 E-value=2.1e+02 Score=22.04 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 043068 322 VMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNAVFRILVENGE 381 (526)
Q Consensus 322 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 381 (526)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455554433 233444444444 55667777777666544555554444555555554
No 349
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.65 E-value=3.5e+02 Score=23.92 Aligned_cols=17 Identities=6% Similarity=0.366 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 043068 416 GRMQDVEDLVDRMIRSGHNLD 436 (526)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~p~ 436 (526)
|+.+ +++.+++.|..++
T Consensus 258 g~~~----~v~~Ll~~ga~~n 274 (351)
T 3utm_A 258 AHND----VMEVLHKHGAKMN 274 (351)
T ss_dssp TCHH----HHHHHHHTTCCTT
T ss_pred CCHH----HHHHHHHCCCCCC
Confidence 6664 3344445555443
No 350
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.29 E-value=28 Score=30.11 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=14.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043068 235 GFCKKGELEEAKKCMNEMMNRGCRPN 260 (526)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 260 (526)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666666555554444
No 351
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.17 E-value=1.8e+02 Score=21.53 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 043068 382 LDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIR-SGHNLDFTMYSCLLKGYCEEGNVENVMQIA 460 (526)
Q Consensus 382 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 460 (526)
+.+|+.-+++..+. .+|......++..+-. -++.+.++.+..++ .|+ ++.++...+....+.|-.++. +.|
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~---t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEF---TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 44555555554432 2455555555554432 24455555554443 243 344555556666666655444 444
Q ss_pred HHHHH
Q 043068 461 HEMVT 465 (526)
Q Consensus 461 ~~m~~ 465 (526)
.+|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
Done!