BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043069
HQLIHITLTSLRCSVAILFGNTSHITMSWRGEIETNPHFRPPPNQLERQHSPLPILGAAT
TTPWYQDHQDQYTQPPRSPVPRAKKQKQRQDRRYWPLGAWSMTPMDQEVRPQPPGGQQQP
HGPDQATEPQWKPQPQWSQATQPKHHGQPHGPEAAIPPLHQDQYHQRNSQGFCAIFWIVI
ILGGIVVLIVYLLFRPHNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDF
SYVVLDLYYGKTLIASQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQLKKEIDSNAV
MFQVKGVFRARSDLGTFLRYSYWLYSHCTIVLSGPPSGVLRASKCRTKR

High Scoring Gene Products

Symbol, full name Information P value
AT1G13050 protein from Arabidopsis thaliana 3.5e-39
AT4G26490 protein from Arabidopsis thaliana 3.2e-28
AT5G56050 protein from Arabidopsis thaliana 5.4e-23
AT5G56070 protein from Arabidopsis thaliana 0.00051

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043069
        (349 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2031840 - symbol:AT1G13050 "AT1G13050" species...   361  3.5e-39   3
TAIR|locus:2131478 - symbol:AT4G26490 "AT4G26490" species...   280  3.2e-28   2
TAIR|locus:2161835 - symbol:AT5G56050 "AT5G56050" species...   241  5.4e-23   2
TAIR|locus:2161755 - symbol:AT5G56070 "AT5G56070" species...    93  0.00051   1


>TAIR|locus:2031840 [details] [associations]
            symbol:AT1G13050 "AT1G13050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            [GO:0006312 "mitotic recombination" evidence=RCA] [GO:0009410
            "response to xenobiotic stimulus" evidence=RCA] [GO:0009560 "embryo
            sac egg cell differentiation" evidence=RCA] [GO:0009640
            "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
            germination" evidence=RCA] [GO:0009909 "regulation of flower
            development" evidence=RCA] [GO:0009933 "meristem structural
            organization" evidence=RCA] [GO:0010162 "seed dormancy process"
            evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
            evidence=RCA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] [GO:0016567 "protein
            ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
            evidence=RCA] [GO:0048522 "positive regulation of cellular process"
            evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC007357
            IPI:IPI00535640 PIR:E86264 RefSeq:NP_172764.1 UniGene:At.49880
            UniGene:At.71978 ProteinModelPortal:Q9SAE0
            EnsemblPlants:AT1G13050.1 GeneID:837862 KEGG:ath:AT1G13050
            TAIR:At1g13050 HOGENOM:HOG000090867 InParanoid:Q9SAE0 OMA:PATICCA
            PhylomeDB:Q9SAE0 ProtClustDB:CLSN2682488 Genevestigator:Q9SAE0
            Uniprot:Q9SAE0
        Length = 317

 Score = 361 (132.1 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
 Identities = 65/155 (41%), Positives = 101/155 (65%)

Query:   195 RPHNPRFDVSSVSLNAAYXXXXXXXXXXXXXXXXFTNPNKKVKVDFSYVVLDLYYGKTLI 254
             RP +P FD+S+ +LN A                 FTNP+KK  VDFSYV+ +LY+  TLI
Sbjct:   163 RPRSPYFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLI 222

Query:   255 ASQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQLKKEIDSNAVMFQVKGVFRARSDL 314
             A++++EPF   +  S  T+ HLV+SQV++    ++ L+ ++ +  V+  ++G F ARS+L
Sbjct:   223 ATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNL 282

Query:   315 GTFLRYSYWLYSHCTIVLSGPPSGVLRASKCRTKR 349
             G+ +RYSYWL++ C+I L+ PP+G +RA +C TKR
Sbjct:   283 GSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTKR 317

 Score = 46 (21.3 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
 Identities = 16/49 (32%), Positives = 19/49 (38%)

Query:    34 ETNPHFRPPPNQLERQHSPLPILGAATTTPWYQDHQDQYTQPPRSPVPR 82
             ETNPHF      L+ QH   P      ++ W   H  Q  Q      PR
Sbjct:     7 ETNPHF--VQFSLQDQHQGGP------SSSWNSPHHHQIPQAHSVAPPR 47

 Score = 38 (18.4 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query:   127 TEPQWKPQPQWSQATQPKHHGQPHGPEAAIPPLH 160
             T  + + +P  +    P     P  PE  +PP H
Sbjct:    52 TRGRHQTEPPETIHESPSSRPLPLRPEEPLPPRH 85


>TAIR|locus:2131478 [details] [associations]
            symbol:AT4G26490 "AT4G26490" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004864 EMBL:CP002687 Pfam:PF03168
            EMBL:AK221464 IPI:IPI00544429 RefSeq:NP_194379.3 UniGene:At.32176
            UniGene:At.68057 ProteinModelPortal:Q56Y59
            EnsemblPlants:AT4G26490.1 GeneID:828755 KEGG:ath:AT4G26490
            TAIR:At4g26490 HOGENOM:HOG000070793 InParanoid:Q56Y59 OMA:NANLHTI
            PhylomeDB:Q56Y59 ProtClustDB:CLSN2916669 Genevestigator:Q56Y59
            Uniprot:Q56Y59
        Length = 268

 Score = 280 (103.6 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 52/179 (29%), Positives = 95/179 (53%)

Query:   171 GFCAIFWXXXXXXXXXXXXXXXXFRPHNPRFDVSSVSLNAAYXXXXXXXXXXXXXXXXFT 230
             GFC +F                  RP  P FD+ + +L+  Y                FT
Sbjct:    91 GFCFVFSLLLIFFAIATLIVFLAIRPRIPVFDIPNANLHTIYFDTPEFFNGDLSMLVNFT 150

Query:   231 NPNKKVKVDFSYVVLDLYYGKTLIASQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQ 290
             NPNKK++V F  + ++L++   LIA+Q V+PF   +  + L  + L++S V LP     +
Sbjct:   151 NPNKKIEVKFEKLRIELFFFNRLIAAQVVQPFLQKKHETRLEPIRLISSLVGLPVNHAVE 210

Query:   291 LKKEIDSNAVMFQVKGVFRARSDLGTFLRYSYWLYSHCTIVLSGPPSGVLRASKCRTKR 349
             L++++++N + ++++G F+ ++  G  + YSY L+  C + ++GPP+G+L +  C TK+
Sbjct:   211 LRRQLENNKIEYEIRGTFKVKAHFG-MIHYSYQLHGRCQLQMTGPPTGILISRNCTTKK 268

 Score = 50 (22.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query:    37 PHFRPPPNQLERQHSP---LP--ILGAATTTPWYQDHQDQYT 73
             PH  PPP QL+   +P    P  +     TTPW      Q T
Sbjct:     5 PHLPPPP-QLQPPETPSWETPSSVWYTPRTTPWRTPQSTQST 45


>TAIR|locus:2161835 [details] [associations]
            symbol:AT5G56050 "AT5G56050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 EMBL:AB011476 ProtClustDB:CLSN2916669
            EMBL:AY773906 IPI:IPI00537635 RefSeq:NP_200416.1 UniGene:At.50914
            ProteinModelPortal:Q9FKU2 EnsemblPlants:AT5G56050.1 GeneID:835703
            KEGG:ath:AT5G56050 TAIR:At5g56050 InParanoid:Q9FKU2 OMA:NTILFES
            PhylomeDB:Q9FKU2 Genevestigator:Q9FKU2 Uniprot:Q9FKU2
        Length = 283

 Score = 241 (89.9 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 51/155 (32%), Positives = 83/155 (53%)

Query:   195 RPHNPRFDVSSVSLNAAYXXXXXXXXXXXXXXXXFTNPNKKVKVDFSYVVLDLYYGKTLI 254
             +P  P FD+S+  LN                   FTNPNKK+ V F  ++++L++  T I
Sbjct:   129 KPRTPVFDISNAKLNTILFESPVYFNGDMLLQLNFTNPNKKLNVRFENLMVELWFADTKI 188

Query:   255 ASQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQLKKEIDSNAVMFQVKGVFRARSDL 314
             A+Q V PFS     + L  + L+++ V LP     +L++++ SN + ++++  FR ++  
Sbjct:   189 ATQGVLPFSQRNGKTRLEPIRLISNLVFLPVNHILELRRQVTSNRIAYEIRSNFRVKAIF 248

Query:   315 GTFLRYSYWLYSHCTIVLSGPPSGVLRASKCRTKR 349
             G  + YSY L+  C + LS PP+G L    C TKR
Sbjct:   249 G-MIHYSYMLHGICQLQLSSPPAGGLVYRNCTTKR 282

 Score = 39 (18.8 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query:    37 PHFRPPPNQLERQHSPLPILGAATTTPWYQDHQDQYTQPPRSPV 80
             P  +P P +     +P     +   TPW    +   + P  +P+
Sbjct:     8 PQSQPQPPETPPWETPSSKWYSPIYTPWRTTPRSTQSTPTTTPI 51


>TAIR|locus:2161755 [details] [associations]
            symbol:AT5G56070 "AT5G56070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB011476
            IPI:IPI00523687 RefSeq:NP_200418.1 UniGene:At.55575
            EnsemblPlants:AT5G56070.1 GeneID:835705 KEGG:ath:AT5G56070
            TAIR:At5g56070 PhylomeDB:Q9FKU0 Genevestigator:Q9FKU0
            Uniprot:Q9FKU0
        Length = 119

 Score = 93 (37.8 bits), Expect = 0.00051, P = 0.00051
 Identities = 16/56 (28%), Positives = 34/56 (60%)

Query:   289 EQLKKEIDSNAVMFQVKGVFRARSDLGTFLRYSYWLYSHCTIVLSGPPSGVLRASK 344
             ++ ++++ SN + +++   FR +  +G ++ YSYWL   C + L+ PP+  L + K
Sbjct:    44 QENQRQVTSNMIEYEIISRFRVKVVIG-YINYSYWLKGSCQLQLTSPPADDLLSRK 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      349       292   0.00090  115 3  11 22  0.36    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  247 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.90u 0.11s 22.01t   Elapsed:  00:00:01
  Total cpu time:  21.90u 0.11s 22.01t   Elapsed:  00:00:01
  Start:  Tue May 21 04:28:35 2013   End:  Tue May 21 04:28:36 2013

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