BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043069
         (349 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2YHF0|POLG_DEN4T Genome polyprotein OS=Dengue virus type 4 (strain
           Thailand/0348/1991) PE=1 SV=1
          Length = 3387

 Score = 32.0 bits (71), Expect = 6.6,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 36/179 (20%)

Query: 172 FCAIFWIVIILGGIVVLIVYLLFRPHNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTN 231
           F  + W+V IL G++VL  ++     N    +S +++    L +G  ++AD+    +++ 
Sbjct: 727 FGGVSWMVRILIGLLVL--WIGTNSRNTSMAMSCIAVGGITLFLGFTVHADMGCAVSWSG 784

Query: 232 PNKKVKVDFSYVVLDLYYGKTLIASQY-VEPFSAARRTSWLTNVHL-----VTSQVRLPF 285
             K++K      V+D  +  T    QY  +P S AR  S + N H      + S  RL  
Sbjct: 785 --KELKCGSGIFVIDNVHTWT---EQYKFQPESPARLASAILNAHKDGVCGIRSTTRLEN 839

Query: 286 AATEQLKKEIDSNAVMFQVKGVFRARSDLGTFLRYSYWLYSHCTIVLSGPPSGVLRASK 344
              +Q+  E                       L Y  W   H   V++G   GVL   K
Sbjct: 840 VMWKQITNE-----------------------LNYVLWEGGHDLTVVAGDVKGVLSKGK 875


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,294,701
Number of Sequences: 539616
Number of extensions: 6569094
Number of successful extensions: 23055
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 19583
Number of HSP's gapped (non-prelim): 2200
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)