Query 043069
Match_columns 349
No_of_seqs 132 out of 812
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 6.9E-33 1.5E-37 257.7 27.9 180 165-348 33-216 (219)
2 PF03168 LEA_2: Late embryogen 99.3 1.4E-11 3.1E-16 98.6 8.4 97 226-328 1-101 (101)
3 smart00769 WHy Water Stress an 98.3 1E-05 2.2E-10 66.3 11.2 88 213-306 7-96 (100)
4 PF07092 DUF1356: Protein of u 97.6 0.0053 1.1E-07 58.4 17.1 80 196-276 98-179 (238)
5 PF12751 Vac7: Vacuolar segreg 96.5 0.022 4.9E-07 57.5 10.9 55 197-255 327-381 (387)
6 COG5608 LEA14-like dessication 96.2 0.15 3.2E-06 45.8 13.2 93 197-299 31-124 (161)
7 PLN03160 uncharacterized prote 95.8 0.25 5.4E-06 46.4 13.4 104 161-271 32-147 (219)
8 KOG3950 Gamma/delta sarcoglyca 80.2 11 0.00024 36.5 8.8 23 218-240 105-127 (292)
9 TIGR02588 conserved hypothetic 69.2 77 0.0017 27.6 11.5 50 178-234 11-62 (122)
10 PF14155 DUF4307: Domain of un 69.0 64 0.0014 27.2 9.8 82 186-280 18-102 (112)
11 PF11906 DUF3426: Protein of u 53.9 88 0.0019 26.9 8.2 57 202-259 49-106 (149)
12 PF14927 Neurensin: Neurensin 50.7 25 0.00054 31.2 4.3 28 173-202 47-75 (140)
13 PF12751 Vac7: Vacuolar segreg 45.8 48 0.001 34.1 5.9 29 181-209 314-344 (387)
14 PF09624 DUF2393: Protein of u 43.7 1.3E+02 0.0029 25.9 7.8 66 186-260 33-100 (149)
15 PF06129 Chordopox_G3: Chordop 42.9 35 0.00077 29.1 3.8 65 187-252 14-86 (109)
16 COG4698 Uncharacterized protei 41.0 23 0.0005 32.9 2.6 39 168-208 10-48 (197)
17 COG5353 Uncharacterized protei 40.5 21 0.00045 32.2 2.2 31 167-197 4-34 (161)
18 PF09865 DUF2092: Predicted pe 40.2 1.9E+02 0.0041 27.2 8.7 56 199-256 17-75 (214)
19 PRK05529 cell division protein 39.6 54 0.0012 31.4 5.1 44 198-242 58-128 (255)
20 PF08113 CoxIIa: Cytochrome c 37.4 24 0.00052 24.0 1.6 15 178-192 10-24 (34)
21 PF15361 RIC3: Resistance to i 37.0 69 0.0015 28.6 5.0 20 176-195 84-103 (152)
22 PF04573 SPC22: Signal peptida 36.8 1.1E+02 0.0024 28.0 6.3 11 194-204 32-42 (175)
23 PRK10893 lipopolysaccharide ex 35.9 2.3E+02 0.005 26.1 8.4 28 195-224 37-64 (192)
24 PF11395 DUF2873: Protein of u 33.2 30 0.00065 24.2 1.6 20 176-195 14-33 (43)
25 PF05545 FixQ: Cbb3-type cytoc 32.7 27 0.00058 25.0 1.4 20 179-198 15-34 (49)
26 PF04790 Sarcoglycan_1: Sarcog 32.0 4.9E+02 0.011 25.4 13.4 18 218-235 83-100 (264)
27 cd01324 cbb3_Oxidase_CcoQ Cyto 31.3 40 0.00086 24.4 2.1 21 177-197 14-34 (48)
28 PTZ00116 signal peptidase; Pro 31.2 1.5E+02 0.0033 27.6 6.3 44 196-239 36-85 (185)
29 PRK06531 yajC preprotein trans 30.8 33 0.00072 29.3 1.9 13 185-197 11-23 (113)
30 PF07787 DUF1625: Protein of u 30.5 50 0.0011 31.3 3.2 19 22-40 22-40 (248)
31 PF12505 DUF3712: Protein of u 29.9 3.3E+02 0.0072 22.8 8.6 68 253-326 2-71 (125)
32 PRK07021 fliL flagellar basal 29.9 2E+02 0.0042 25.6 6.7 18 237-254 77-94 (162)
33 PF06092 DUF943: Enterobacteri 29.8 38 0.00083 30.6 2.2 17 180-196 12-28 (157)
34 PRK07718 fliL flagellar basal 29.5 78 0.0017 27.6 4.0 15 239-253 63-77 (142)
35 PF00927 Transglut_C: Transglu 29.4 1.4E+02 0.0031 24.0 5.4 60 217-276 11-74 (107)
36 COG1589 FtsQ Cell division sep 28.8 57 0.0012 31.3 3.3 36 175-210 34-69 (269)
37 KOG3927 Na+/K+ ATPase, beta su 28.6 39 0.00085 33.6 2.2 39 166-205 42-83 (300)
38 PF15145 DUF4577: Domain of un 28.5 88 0.0019 27.0 3.9 28 169-196 61-88 (128)
39 PF09604 Potass_KdpF: F subuni 27.5 42 0.0009 21.3 1.4 20 179-198 5-24 (25)
40 PF12505 DUF3712: Protein of u 26.7 1.3E+02 0.0028 25.3 4.8 27 219-246 98-124 (125)
41 PF01102 Glycophorin_A: Glycop 26.3 40 0.00087 29.2 1.6 24 182-205 77-101 (122)
42 PF12321 DUF3634: Protein of u 25.9 35 0.00077 29.0 1.2 23 181-204 5-29 (108)
43 PF06024 DUF912: Nucleopolyhed 25.3 77 0.0017 26.2 3.1 20 175-194 67-86 (101)
44 PF15012 DUF4519: Domain of un 25.2 62 0.0013 24.5 2.2 18 180-197 39-56 (56)
45 COG4736 CcoQ Cbb3-type cytochr 23.8 57 0.0012 25.0 1.8 19 180-198 16-34 (60)
46 PF02009 Rifin_STEVOR: Rifin/s 23.2 42 0.00091 33.3 1.3 19 177-195 262-280 (299)
47 PHA02973 hypothetical protein; 22.8 1.4E+02 0.0031 25.2 4.1 41 189-235 15-56 (102)
48 PF03100 CcmE: CcmE; InterPro 22.6 1E+02 0.0022 26.6 3.4 8 244-251 83-90 (131)
49 PF09889 DUF2116: Uncharacteri 22.0 74 0.0016 24.2 2.1 7 153-159 10-16 (59)
50 PF07172 GRP: Glycine rich pro 21.9 76 0.0017 26.2 2.4 15 177-191 7-21 (95)
51 PF09911 DUF2140: Uncharacteri 21.7 99 0.0021 28.4 3.3 22 178-199 10-31 (187)
52 PRK08455 fliL flagellar basal 21.4 1.6E+02 0.0034 27.1 4.5 15 239-253 103-117 (182)
53 PF10907 DUF2749: Protein of u 21.4 79 0.0017 24.6 2.2 16 182-197 13-28 (66)
54 PF04478 Mid2: Mid2 like cell 21.1 66 0.0014 29.1 2.0 22 180-201 61-82 (154)
55 PF05170 AsmA: AsmA family; I 21.0 4.3E+02 0.0092 27.9 8.4 50 199-260 440-489 (604)
56 TIGR02745 ccoG_rdxA_fixG cytoc 20.9 9.7E+02 0.021 25.0 12.3 17 261-277 382-398 (434)
57 PF15399 DUF4620: Domain of un 20.4 1.1E+02 0.0024 25.4 3.0 11 166-176 65-75 (113)
58 KOG0811 SNARE protein PEP12/VA 20.2 49 0.0011 32.4 1.1 22 173-194 246-267 (269)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=6.9e-33 Score=257.71 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=155.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHhhheeeecCCCCEEEEEEEEEeeeecCC----CceEeEEEEEEEEEEcCCCeeEEEE
Q 043069 165 HQRNSQGFCAIFWIVIILGGIVVLIVYLLFRPHNPRFDVSSVSLNAAYLDV----GVLLNADLNVLANFTNPNKKVKVDF 240 (349)
Q Consensus 165 ~~r~~~clc~vLlllvlLlGIavLIlwLVlRPk~P~fsV~sasLs~fnvs~----~s~Lna~lsltLtv~NPNkkv~I~Y 240 (349)
+++|++||+++++++++++++++.++|++|||++|+|+|++++|++|+++. ...+|++++++++++|||+ ++|+|
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y 111 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKY 111 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEE
Confidence 335666666666666677888888999999999999999999999999865 2467888999999999998 89999
Q ss_pred cceEEEEEECCEEeeeeccccceecCCCeEEEEEEEEecceecChhhHHHHHhcccCCeEEEEEEEEEEEEEEEeEEEEE
Q 043069 241 SYVVLDLYYGKTLIASQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQLKKEIDSNAVMFQVKGVFRARSDLGTFLRY 320 (349)
Q Consensus 241 d~i~a~V~Y~G~~LG~a~vp~F~Qg~rstt~l~v~l~~~~V~L~~~~a~~L~~dl~~G~V~LdV~v~~rvR~kvG~~~s~ 320 (349)
+++++.++|+|+.+|.+.+|+|+|++++++.+++++......+.. ...|.+|+++|.++|++++++++++++|++.++
T Consensus 112 ~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~ 189 (219)
T PLN03160 112 SNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKK 189 (219)
T ss_pred cCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEE
Confidence 999999999999999999999999999999998886544433322 357999999999999999999999999999999
Q ss_pred EEEEEEEEEEEEeCCCCceEEcccCeeC
Q 043069 321 SYWLYSHCTIVLSGPPSGVLRASKCRTK 348 (349)
Q Consensus 321 ~~~v~V~C~L~V~~p~nGt~~s~~C~~k 348 (349)
++.++++|++.|+. .+.+++++.|+.+
T Consensus 190 ~v~~~v~C~v~V~~-~~~~i~~~~C~~~ 216 (219)
T PLN03160 190 HVVVKMNCTMTVNI-TSQAIQGQKCKRH 216 (219)
T ss_pred EEEEEEEeEEEEEC-CCCEEeccEeccc
Confidence 99999999999986 6778999999976
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.28 E-value=1.4e-11 Score=98.61 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=72.9
Q ss_pred EEEEEcCCCeeEEEEcceEEEEEECCEEee-eeccccceecCCCeEEEEEEEEecceecChhhHHHHHhcccCCeEEEEE
Q 043069 226 LANFTNPNKKVKVDFSYVVLDLYYGKTLIA-SQYVEPFSAARRTSWLTNVHLVTSQVRLPFAATEQLKKEIDSNAVMFQV 304 (349)
Q Consensus 226 tLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG-~a~vp~F~Qg~rstt~l~v~l~~~~V~L~~~~a~~L~~dl~~G~V~LdV 304 (349)
+|+++|||. ++++|+++++.++|+|..|| ....++|.|++++++.+.+.+..+...+ ...+.+++ +|...+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 578999999 99999999999999999999 7789999999999998888776555432 55666666 66777888
Q ss_pred EEEEEEEEEE-eEE--EEEEEEEEEEE
Q 043069 305 KGVFRARSDL-GTF--LRYSYWLYSHC 328 (349)
Q Consensus 305 ~v~~rvR~kv-G~~--~s~~~~v~V~C 328 (349)
.+++++++++ +.. .+.+++++..|
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeEC
Confidence 8888888884 433 34455555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.30 E-value=1e-05 Score=66.29 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred cCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccc-cceecCCCeEEEEEEEEecceecChhhHHHH
Q 043069 213 LDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVE-PFSAARRTSWLTNVHLVTSQVRLPFAATEQL 291 (349)
Q Consensus 213 vs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp-~F~Qg~rstt~l~v~l~~~~V~L~~~~a~~L 291 (349)
....+.++..+.+.+.+.|||. +.+.|+.++..++|+|..+|.+..+ ++..++++++.+.+.+..+ . .....+
T Consensus 7 ~~~~~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~----~~~~~~ 80 (100)
T smart00769 7 WGPVSGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-L----FLAEAL 80 (100)
T ss_pred eccccceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-h----hHhHHH
Confidence 3334567899999999999998 9999999999999999999999985 7999999988887776552 2 234455
Q ss_pred HhcccCCe-EEEEEEE
Q 043069 292 KKEIDSNA-VMFQVKG 306 (349)
Q Consensus 292 ~~dl~~G~-V~LdV~v 306 (349)
..++.+|. +++.+++
T Consensus 81 ~~~l~~~~~~~y~l~g 96 (100)
T smart00769 81 IWHIANGEEIPYRLDG 96 (100)
T ss_pred HHhhccCCCccEEEEE
Confidence 56665553 4444433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.59 E-value=0.0053 Score=58.45 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCEEEEEEEEEeeeecCC-CceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccccc-eecCCCeEEEE
Q 043069 196 PHNPRFDVSSVSLNAAYLDV-GVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVEPF-SAARRTSWLTN 273 (349)
Q Consensus 196 Pk~P~fsV~sasLs~fnvs~-~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp~F-~Qg~rstt~l~ 273 (349)
||.-.++-+++......++. ...+..++.-.|.++|+|. +.|.-.++++.+.|....+|.+..... ..++++.+.+.
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~ 176 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVN 176 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEE
Confidence 77655554444433333333 2467888888999999997 999999999999999999999877655 45777776666
Q ss_pred EEE
Q 043069 274 VHL 276 (349)
Q Consensus 274 v~l 276 (349)
+++
T Consensus 177 ~tV 179 (238)
T PF07092_consen 177 YTV 179 (238)
T ss_pred EEe
Confidence 654
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.52 E-value=0.022 Score=57.54 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=38.9
Q ss_pred CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEee
Q 043069 197 HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIA 255 (349)
Q Consensus 197 k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG 255 (349)
.+|--.|+-+.+++.-.+ .-..-|+|+|.+.|||- +.|..+++++.|+=+..-+|
T Consensus 327 tKpL~~v~v~~I~NVlaS---~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 327 TKPLTDVQVVSIQNVLAS---EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred CcccccceEEEeeeeeec---cceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence 345555666666664333 23466788899999997 99999999999986654444
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.24 E-value=0.15 Score=45.77 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=67.5
Q ss_pred CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeecc-ccceecCCCeEEEEEE
Q 043069 197 HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYV-EPFSAARRTSWLTNVH 275 (349)
Q Consensus 197 k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~v-p~F~Qg~rstt~l~v~ 275 (349)
++|.+.--.+..-... .....+-.++.++|||. +.|-...++..++-+|..+|.+.. .++..++++...+.+.
T Consensus 31 ~~p~ve~~ka~wGkvt-----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 31 KKPGVESMKAKWGKVT-----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred CCCCceEEEEEEEEEe-----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 4566555555555432 23467888899999998 999999999999999999999864 5688899988888887
Q ss_pred EEecceecChhhHHHHHhcccCCe
Q 043069 276 LVTSQVRLPFAATEQLKKEIDSNA 299 (349)
Q Consensus 276 l~~~~V~L~~~~a~~L~~dl~~G~ 299 (349)
+..+.-.+ -+.+...+.+|.
T Consensus 105 l~~d~~~~----ke~w~~hi~ngE 124 (161)
T COG5608 105 LRLDNSKI----KEWWVTHIENGE 124 (161)
T ss_pred EEEehHHH----HHHHHHHhhccC
Confidence 75554322 344555666654
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.79 E-value=0.25 Score=46.44 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=65.1
Q ss_pred CCcCcccccchhHHHHHHHHHHHHHHHhhheeeecCC--CCEEEEEEEEEee-------eecCCC---ceEeEEEEEEEE
Q 043069 161 QDQYHQRNSQGFCAIFWIVIILGGIVVLIVYLLFRPH--NPRFDVSSVSLNA-------AYLDVG---VLLNADLNVLAN 228 (349)
Q Consensus 161 ~~~~~~r~~~clc~vLlllvlLlGIavLIlwLVlRPk--~P~fsV~sasLs~-------fnvs~~---s~Lna~lsltLt 228 (349)
++++..+||+|+|++++++++++++++++++=.=.|+ .-.++|+++.++. +|++-. ..-|.|. +.+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 4555569999999999888888888888777677774 4567777766542 232210 1123444 3454
Q ss_pred EEcCCCeeEEEEcceEEEEEECCEEeeeeccccceecCCCeEE
Q 043069 229 FTNPNKKVKVDFSYVVLDLYYGKTLIASQYVEPFSAARRTSWL 271 (349)
Q Consensus 229 v~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp~F~Qg~rstt~ 271 (349)
.. |..+.++|+...+.- ..+..+.++++.+..-+.+.
T Consensus 111 Y~--~~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 111 YS--NTTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred Ec--CeEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence 44 344889998854433 34555666666665555553
No 8
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=80.24 E-value=11 Score=36.47 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=18.1
Q ss_pred eEeEEEEEEEEEEcCCCeeEEEE
Q 043069 218 LLNADLNVLANFTNPNKKVKVDF 240 (349)
Q Consensus 218 ~Lna~lsltLtv~NPNkkv~I~Y 240 (349)
.+...=+++++++|||.++.-.+
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 56777789999999999765444
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=69.24 E-value=77 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhe--eeecCCCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCC
Q 043069 178 IVIILGGIVVLIVY--LLFRPHNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNK 234 (349)
Q Consensus 178 llvlLlGIavLIlw--LVlRPk~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNk 234 (349)
.++|+++++.+++| +.-+.+.|.+.+......+- ....+-+-++++|-..
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCC
Confidence 33555666666666 45577899998887766652 2344566677788665
No 10
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=69.01 E-value=64 Score=27.22 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHhhheeeec-CCCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeee--ccccc
Q 043069 186 VVLIVYLLFR-PHNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQ--YVEPF 262 (349)
Q Consensus 186 avLIlwLVlR-Pk~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a--~vp~F 262 (349)
++++.|+.+. -..+.++ ..+..|.+.+++.+..+|+ ++- +|.... .. +--...|++..+|.. .+|+
T Consensus 18 ~~~~~w~~~~~~~~~~v~---~~~~gf~vv~d~~v~v~f~--Vtr-~~~~~a-~C---~VrA~~~d~aeVGrreV~vp~- 86 (112)
T PF14155_consen 18 GAVVAWFGYSQFGSPPVS---AEVIGFEVVDDSTVEVTFD--VTR-DPGRPA-VC---IVRALDYDGAEVGRREVLVPP- 86 (112)
T ss_pred HHHHhHhhhhhccCCCce---EEEEEEEECCCCEEEEEEE--EEE-CCCCCE-EE---EEEEEeCCCCEEEEEEEEECC-
Confidence 3344444443 3444443 3344444544444443333 322 366521 11 112234677778864 4555
Q ss_pred eecCCCeEEEEEEEEecc
Q 043069 263 SAARRTSWLTNVHLVTSQ 280 (349)
Q Consensus 263 ~Qg~rstt~l~v~l~~~~ 280 (349)
+...+..+.+.+...+
T Consensus 87 --~~~~~~~~~v~v~Tt~ 102 (112)
T PF14155_consen 87 --SGERTVRVTVTVRTTA 102 (112)
T ss_pred --CCCcEEEEEEEEEecC
Confidence 3333444445554433
No 11
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=53.88 E-value=88 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=37.9
Q ss_pred EEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEE-ECCEEeeeecc
Q 043069 202 DVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLY-YGKTLIASQYV 259 (349)
Q Consensus 202 sV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~-Y~G~~LG~a~v 259 (349)
.++.++++...+.....-+-.+.++.++.|... ....|-.++++++ -+|..+++-.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 444555544333322123456777788899887 7889999999998 67877776554
No 12
>PF14927 Neurensin: Neurensin
Probab=50.73 E-value=25 Score=31.21 Aligned_cols=28 Identities=32% Similarity=0.416 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHh-hheeeecCCCCEEE
Q 043069 173 CAIFWIVIILGGIVVL-IVYLLFRPHNPRFD 202 (349)
Q Consensus 173 c~vLlllvlLlGIavL-IlwLVlRPk~P~fs 202 (349)
|.++.++++++|++++ +-|++ |++.+..
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--CCcceec
Confidence 4455556677887766 44553 4444433
No 13
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=45.81 E-value=48 Score=34.10 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHHhhheeeecC-CCCEE-EEEEEEEe
Q 043069 181 ILGGIVVLIVYLLFRP-HNPRF-DVSSVSLN 209 (349)
Q Consensus 181 lLlGIavLIlwLVlRP-k~P~f-sV~sasLs 209 (349)
|++|.++..++..-|| ....+ .|+++-.+
T Consensus 314 L~ig~~~gFv~AttKpL~~v~v~~I~NVlaS 344 (387)
T PF12751_consen 314 LVIGFAIGFVFATTKPLTDVQVVSIQNVLAS 344 (387)
T ss_pred HHHHHHHHhhhhcCcccccceEEEeeeeeec
Confidence 3333333333345588 55555 66666544
No 14
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=43.71 E-value=1.3e+02 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHhhheeeecC--CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccc
Q 043069 186 VVLIVYLLFRP--HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVE 260 (349)
Q Consensus 186 avLIlwLVlRP--k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp 260 (349)
+.+++|.++.- +++..++.+..- +.. +-.+.+..+++|-.+ ..+..=.+++.+..++...+.....
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n~~~~ 100 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY------SESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGNKFKE 100 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee------ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCchhhh
Confidence 33344444444 455555554432 322 345666788899876 7888888888888877655554333
No 15
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=42.90 E-value=35 Score=29.08 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=31.2
Q ss_pred HhhheeeecC-CCCEEEEEEEEEeeeecC-CCceEeEEEEEEEEEEcCCC----eeEEEEcc--eEEEEEECCE
Q 043069 187 VLIVYLLFRP-HNPRFDVSSVSLNAAYLD-VGVLLNADLNVLANFTNPNK----KVKVDFSY--VVLDLYYGKT 252 (349)
Q Consensus 187 vLIlwLVlRP-k~P~fsV~sasLs~fnvs-~~s~Lna~lsltLtv~NPNk----kv~I~Yd~--i~a~V~Y~G~ 252 (349)
++..|+-+.| .+=...|....-++.-.. .+..+.. ..-++-+.|||+ .+.++|++ ..+.|.|+|.
T Consensus 14 ~~~Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~~-~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 14 VLCYFFNYYPTNKMQLAVRELNYENAIIKQQDDNLPK-LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred HHHHHHhhccchHHHHhhcccchhhHHHhcccccCcc-ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 3344566777 445555555443332111 1122333 333445678873 35566665 3345555553
No 16
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.00 E-value=23 Score=32.86 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=23.8
Q ss_pred ccchhHHHHHHHHHHHHHHHhhheeeecCCCCEEEEEEEEE
Q 043069 168 NSQGFCAIFWIVIILGGIVVLIVYLLFRPHNPRFDVSSVSL 208 (349)
Q Consensus 168 ~~~clc~vLlllvlLlGIavLIlwLVlRPk~P~fsV~sasL 208 (349)
+.+-+|.+|+++.++++ ++++.+++.|+.+...+.+++=
T Consensus 10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 10 YWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 44555555554444333 6777788999997666665543
No 17
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.48 E-value=21 Score=32.19 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=23.5
Q ss_pred cccchhHHHHHHHHHHHHHHHhhheeeecCC
Q 043069 167 RNSQGFCAIFWIVIILGGIVVLIVYLLFRPH 197 (349)
Q Consensus 167 r~~~clc~vLlllvlLlGIavLIlwLVlRPk 197 (349)
+++..+.+++++|+.+.+.+++.+|...+|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 5666666667777777888888999888874
No 18
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=40.22 E-value=1.9e+02 Score=27.23 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=38.8
Q ss_pred CEEEEEE-EEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcc--eEEEEEECCEEeee
Q 043069 199 PRFDVSS-VSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSY--VVLDLYYGKTLIAS 256 (349)
Q Consensus 199 P~fsV~s-asLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~--i~a~V~Y~G~~LG~ 256 (349)
-.|+|+. ++.+.. ..++..+...-+.+|.++=||+ +.+.+.. .+..++|+|..+.-
T Consensus 17 k~fs~~~~~t~d~v-~~~gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 17 KSFSFTADSTYDVV-TPDGQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred cEEEEEEEeeeeee-cCCCceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEEE
Confidence 3555553 233332 2334578888899999999997 8888843 77889999976643
No 19
>PRK05529 cell division protein FtsQ; Provisional
Probab=39.65 E-value=54 Score=31.41 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCEEEEEEEEEeeeecCC------------C-ce--------------EeEEEEEEEEEEcCCCeeEEEEcc
Q 043069 198 NPRFDVSSVSLNAAYLDV------------G-VL--------------LNADLNVLANFTNPNKKVKVDFSY 242 (349)
Q Consensus 198 ~P~fsV~sasLs~fnvs~------------~-s~--------------Lna~lsltLtv~NPNkkv~I~Yd~ 242 (349)
.|.|.|..+.|++-..-+ + +. +-.-=+++++-..||. +.|.-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 589999999988643211 1 11 1122356677789997 7777765
No 20
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=37.39 E-value=24 Score=23.99 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhee
Q 043069 178 IVIILGGIVVLIVYL 192 (349)
Q Consensus 178 llvlLlGIavLIlwL 192 (349)
.++.+++++++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 344566777777775
No 21
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=36.98 E-value=69 Score=28.64 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhheeeec
Q 043069 176 FWIVIILGGIVVLIVYLLFR 195 (349)
Q Consensus 176 LlllvlLlGIavLIlwLVlR 195 (349)
.++-+-.+||+++++|.+||
T Consensus 84 ~imPlYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 84 QIMPLYTIGIVLFILYTLFK 103 (152)
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 44557889999999998886
No 22
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=36.81 E-value=1.1e+02 Score=28.00 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=5.7
Q ss_pred ecCCCCEEEEE
Q 043069 194 FRPHNPRFDVS 204 (349)
Q Consensus 194 lRPk~P~fsV~ 204 (349)
+.+..|..+|.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 55555555543
No 23
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=35.88 E-value=2.3e+02 Score=26.08 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=20.1
Q ss_pred cCCCCEEEEEEEEEeeeecCCCceEeEEEE
Q 043069 195 RPHNPRFDVSSVSLNAAYLDVGVLLNADLN 224 (349)
Q Consensus 195 RPk~P~fsV~sasLs~fnvs~~s~Lna~ls 224 (349)
.++.|.|.+++++...|+.+. .+++.++
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G--~l~y~l~ 64 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG--ALSYKLV 64 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC--CEEEEEE
Confidence 457799999999999987653 3444443
No 24
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=33.24 E-value=30 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhheeeec
Q 043069 176 FWIVIILGGIVVLIVYLLFR 195 (349)
Q Consensus 176 LlllvlLlGIavLIlwLVlR 195 (349)
+.++++++-|.++|+|+++.
T Consensus 14 l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444455567776653
No 25
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=32.66 E-value=27 Score=24.97 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheeeecCCC
Q 043069 179 VIILGGIVVLIVYLLFRPHN 198 (349)
Q Consensus 179 lvlLlGIavLIlwLVlRPk~ 198 (349)
++++++++++|+|-+++|+.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 34445555555666777863
No 26
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=32.03 E-value=4.9e+02 Score=25.35 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=12.0
Q ss_pred eEeEEEEEEEEEEcCCCe
Q 043069 218 LLNADLNVLANFTNPNKK 235 (349)
Q Consensus 218 ~Lna~lsltLtv~NPNkk 235 (349)
.+..+=++.++++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344455677777888875
No 27
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=31.34 E-value=40 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhheeeecCC
Q 043069 177 WIVIILGGIVVLIVYLLFRPH 197 (349)
Q Consensus 177 lllvlLlGIavLIlwLVlRPk 197 (349)
+.++++++++++|++-+|+|+
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~ 34 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 444445556666666677785
No 28
>PTZ00116 signal peptidase; Provisional
Probab=31.25 E-value=1.5e+02 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.007 Sum_probs=23.0
Q ss_pred CCCCEEEEEEEEEeeeecCCC-----ceEeEEEEEEEEE-EcCCCeeEEE
Q 043069 196 PHNPRFDVSSVSLNAAYLDVG-----VLLNADLNVLANF-TNPNKKVKVD 239 (349)
Q Consensus 196 Pk~P~fsV~sasLs~fnvs~~-----s~Lna~lsltLtv-~NPNkkv~I~ 239 (349)
...|..+|+-.+|.+|.+... ..++.++++.|+- -|=|.|.-+-
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFv 85 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFL 85 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEE
Confidence 455667777667778765432 2344444444432 2666654443
No 29
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=30.77 E-value=33 Score=29.31 Aligned_cols=13 Identities=8% Similarity=0.539 Sum_probs=8.0
Q ss_pred HHHhhheeeecCC
Q 043069 185 IVVLIVYLLFRPH 197 (349)
Q Consensus 185 IavLIlwLVlRPk 197 (349)
++++++||++||.
T Consensus 11 v~~~i~yf~iRPQ 23 (113)
T PRK06531 11 VMLGLIFFMQRQQ 23 (113)
T ss_pred HHHHHHHheechH
Confidence 3344456679995
No 30
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=30.55 E-value=50 Score=31.31 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=14.8
Q ss_pred cceeeEeeeeecccCCCCC
Q 043069 22 TSHITMSWRGEIETNPHFR 40 (349)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (349)
+-...+.|+-++...-+|.
T Consensus 22 ~Y~Y~~~W~s~~i~S~~F~ 40 (248)
T PF07787_consen 22 TYTYNKEWRSELIDSSNFD 40 (248)
T ss_pred EEEEEEEEeecccCccccC
Confidence 5567889999988877764
No 31
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=29.94 E-value=3.3e+02 Score=22.79 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=39.5
Q ss_pred EeeeeccccceecC-CCeEEEEEEEEecceecChhhHHHHHhcc-cCCeEEEEEEEEEEEEEEEeEEEEEEEEEEE
Q 043069 253 LIASQYVEPFSAAR-RTSWLTNVHLVTSQVRLPFAATEQLKKEI-DSNAVMFQVKGVFRARSDLGTFLRYSYWLYS 326 (349)
Q Consensus 253 ~LG~a~vp~F~Qg~-rstt~l~v~l~~~~V~L~~~~a~~L~~dl-~~G~V~LdV~v~~rvR~kvG~~~s~~~~v~V 326 (349)
.+|...+|+..... ......+..+... +.++..++.+++ .+..+.+.++.+ ...++|.+.......+.
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~----d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k 71 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTIT----DQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDK 71 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEec----CHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecc
Confidence 47788899998822 2233333333222 224556677775 556677777766 47788887544444433
No 32
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.87 E-value=2e+02 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=11.9
Q ss_pred EEEEcceEEEEEECCEEe
Q 043069 237 KVDFSYVVLDLYYGKTLI 254 (349)
Q Consensus 237 ~I~Yd~i~a~V~Y~G~~L 254 (349)
+.+|=.+.+.+.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 457777777777766543
No 33
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=29.85 E-value=38 Score=30.62 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=11.8
Q ss_pred HHHHHHHHhhheeeecC
Q 043069 180 IILGGIVVLIVYLLFRP 196 (349)
Q Consensus 180 vlLlGIavLIlwLVlRP 196 (349)
++++++++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 44445555889989997
No 34
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.50 E-value=78 Score=27.65 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=8.7
Q ss_pred EEcceEEEEEECCEE
Q 043069 239 DFSYVVLDLYYGKTL 253 (349)
Q Consensus 239 ~Yd~i~a~V~Y~G~~ 253 (349)
+|=++++.+.+++..
T Consensus 63 ~ylk~~i~l~~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIETDSKK 77 (142)
T ss_pred CEEEEEEEEEECCHH
Confidence 355666666666543
No 35
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=29.40 E-value=1.4e+02 Score=24.03 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=35.8
Q ss_pred ceEeEEEEEEEEEEcCCCee--EEEEcceEEEEEECCEEeee--eccccceecCCCeEEEEEEE
Q 043069 217 VLLNADLNVLANFTNPNKKV--KVDFSYVVLDLYYGKTLIAS--QYVEPFSAARRTSWLTNVHL 276 (349)
Q Consensus 217 s~Lna~lsltLtv~NPNkkv--~I~Yd~i~a~V~Y~G~~LG~--a~vp~F~Qg~rstt~l~v~l 276 (349)
..+.-++++.+++.||...- .+...=.-..++|.|..... ........+++++..+.+.+
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 34567889999999997621 12222245567888876533 33445556777777776654
No 36
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=28.85 E-value=57 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhheeeecCCCCEEEEEEEEEee
Q 043069 175 IFWIVIILGGIVVLIVYLLFRPHNPRFDVSSVSLNA 210 (349)
Q Consensus 175 vLlllvlLlGIavLIlwLVlRPk~P~fsV~sasLs~ 210 (349)
+++..++++++.++++|...-+..|.|.+..++|++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 34 LIGLYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 344445566677778888888889999999999886
No 37
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=28.58 E-value=39 Score=33.59 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=25.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhee---eecCCCCEEEEEE
Q 043069 166 QRNSQGFCAIFWIVIILGGIVVLIVYL---LFRPHNPRFDVSS 205 (349)
Q Consensus 166 ~r~~~clc~vLlllvlLlGIavLIlwL---VlRPk~P~fsV~s 205 (349)
.+|+.++..-+++-++|++++++++|. -+-|+.|++. ++
T Consensus 42 ~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 42 SSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 377777654455455666666665564 4689999999 44
No 38
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=28.47 E-value=88 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhheeeecC
Q 043069 169 SQGFCAIFWIVIILGGIVVLIVYLLFRP 196 (349)
Q Consensus 169 ~~clc~vLlllvlLlGIavLIlwLVlRP 196 (349)
+-++..+++++++-++++.|+++|++.-
T Consensus 61 ~lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 3334445555566677777777777653
No 39
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=27.48 E-value=42 Score=21.34 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhheeeecCCC
Q 043069 179 VIILGGIVVLIVYLLFRPHN 198 (349)
Q Consensus 179 lvlLlGIavLIlwLVlRPk~ 198 (349)
+++.+++++.++|-+++|.+
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34455566666666778853
No 40
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=26.73 E-value=1.3e+02 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=19.5
Q ss_pred EeEEEEEEEEEEcCCCeeEEEEcceEEE
Q 043069 219 LNADLNVLANFTNPNKKVKVDFSYVVLD 246 (349)
Q Consensus 219 Lna~lsltLtv~NPNkkv~I~Yd~i~a~ 246 (349)
-.+++..++.+.||.. +++..+.+.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3566777788889987 78877776554
No 41
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.31 E-value=40 Score=29.21 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=8.5
Q ss_pred HHHHHHhhheeeecC-CCCEEEEEE
Q 043069 182 LGGIVVLIVYLLFRP-HNPRFDVSS 205 (349)
Q Consensus 182 LlGIavLIlwLVlRP-k~P~fsV~s 205 (349)
++|+++||+|++-|= |+....++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 345566677766533 555555554
No 42
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=25.93 E-value=35 Score=29.02 Aligned_cols=23 Identities=35% Similarity=0.571 Sum_probs=12.6
Q ss_pred HHHHHHHhhheeeecC--CCCEEEEE
Q 043069 181 ILGGIVVLIVYLLFRP--HNPRFDVS 204 (349)
Q Consensus 181 lLlGIavLIlwLVlRP--k~P~fsV~ 204 (349)
|+++++ +|+||++-= ..|.|.|.
T Consensus 5 ilia~~-li~~Lv~~~r~~~~vf~i~ 29 (108)
T PF12321_consen 5 ILIAAA-LIFWLVFVDRRGLPVFEIH 29 (108)
T ss_pred HHHHHH-HHHHHHHccccCceEEEEE
Confidence 333333 778876533 34666654
No 43
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.34 E-value=77 Score=26.22 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhheeee
Q 043069 175 IFWIVIILGGIVVLIVYLLF 194 (349)
Q Consensus 175 vLlllvlLlGIavLIlwLVl 194 (349)
.++.+++++.++.+|.|+++
T Consensus 67 ~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 67 SLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHHHhhheEEEE
Confidence 33333444444444556543
No 44
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=25.20 E-value=62 Score=24.51 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHHHHHhhheeeecCC
Q 043069 180 IILGGIVVLIVYLLFRPH 197 (349)
Q Consensus 180 vlLlGIavLIlwLVlRPk 197 (349)
++++.++++++|+.-||+
T Consensus 39 ~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 39 AAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHhheeEEeccCC
Confidence 334445666777777874
No 45
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=57 Score=24.97 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=11.8
Q ss_pred HHHHHHHHhhheeeecCCC
Q 043069 180 IILGGIVVLIVYLLFRPHN 198 (349)
Q Consensus 180 vlLlGIavLIlwLVlRPk~ 198 (349)
+.+..+++.++|.+|||+.
T Consensus 16 ~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3344455667777888853
No 46
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.16 E-value=42 Score=33.29 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhheeeec
Q 043069 177 WIVIILGGIVVLIVYLLFR 195 (349)
Q Consensus 177 lllvlLlGIavLIlwLVlR 195 (349)
+++++++.++++|+||++|
T Consensus 262 iiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445566777787765
No 47
>PHA02973 hypothetical protein; Provisional
Probab=22.76 E-value=1.4e+02 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred hheeeecC-CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCe
Q 043069 189 IVYLLFRP-HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKK 235 (349)
Q Consensus 189 IlwLVlRP-k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkk 235 (349)
..|+-+.| .+-...|....-.+.. ++ -.+..++-+.||++.
T Consensus 15 ~Y~fn~~pTNKmq~aV~~l~~e~~~-d~-----p~~l~t~lF~~~~~~ 56 (102)
T PHA02973 15 CYFFNFKRTNKMDIGINPIKKIPWS-DN-----DHIFVSSLFHNKDKY 56 (102)
T ss_pred HHHhhccccchhhhhhhhccccccc-CC-----CceeEEEEecCCCCc
Confidence 33455666 5567777666555522 32 134556667888873
No 48
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=22.59 E-value=1e+02 Score=26.57 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=4.4
Q ss_pred EEEEEECC
Q 043069 244 VLDLYYGK 251 (349)
Q Consensus 244 ~a~V~Y~G 251 (349)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 45555555
No 49
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.02 E-value=74 Score=24.19 Aligned_cols=7 Identities=43% Similarity=0.681 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 043069 153 EAAIPPL 159 (349)
Q Consensus 153 gp~iPP~ 159 (349)
|-+|||-
T Consensus 10 G~~Ip~~ 16 (59)
T PF09889_consen 10 GKPIPPD 16 (59)
T ss_pred CCcCCcc
Confidence 5667754
No 50
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.92 E-value=76 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhhe
Q 043069 177 WIVIILGGIVVLIVY 191 (349)
Q Consensus 177 lllvlLlGIavLIlw 191 (349)
++|.++|++++||..
T Consensus 7 llL~l~LA~lLlisS 21 (95)
T PF07172_consen 7 LLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444443
No 51
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=21.65 E-value=99 Score=28.39 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhheeeecCCCC
Q 043069 178 IVIILGGIVVLIVYLLFRPHNP 199 (349)
Q Consensus 178 llvlLlGIavLIlwLVlRPk~P 199 (349)
++.+++++++++++.++.|..+
T Consensus 10 Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 10 LLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHhheeeEEEccCCC
Confidence 3445566666777788888866
No 52
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.36 E-value=1.6e+02 Score=27.06 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=10.7
Q ss_pred EEcceEEEEEECCEE
Q 043069 239 DFSYVVLDLYYGKTL 253 (349)
Q Consensus 239 ~Yd~i~a~V~Y~G~~ 253 (349)
+|=.+.+.+.+.+..
T Consensus 103 ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLELSNEK 117 (182)
T ss_pred eEEEEEEEEEECCHh
Confidence 677777777776654
No 53
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=21.35 E-value=79 Score=24.65 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHHHhhheeeecCC
Q 043069 182 LGGIVVLIVYLLFRPH 197 (349)
Q Consensus 182 LlGIavLIlwLVlRPk 197 (349)
+.+.+..+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4445666888999998
No 54
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.09 E-value=66 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=15.2
Q ss_pred HHHHHHHHhhheeeecCCCCEE
Q 043069 180 IILGGIVVLIVYLLFRPHNPRF 201 (349)
Q Consensus 180 vlLlGIavLIlwLVlRPk~P~f 201 (349)
.||++++++++|+.+|.++=.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 3445677788888888876443
No 55
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=20.96 E-value=4.3e+02 Score=27.92 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=25.1
Q ss_pred CEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccc
Q 043069 199 PRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVE 260 (349)
Q Consensus 199 P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp 260 (349)
-++++.++++.++.++. +.+.+++-+. .+..+.+++.+ |+|..=|.+.+.
T Consensus 440 ~~l~~~~l~~~~l~i~~---------~~~~~~~~~G--~l~l~~l~~~l-~~G~~~~~~~ld 489 (604)
T PF05170_consen 440 LTLSAGSLKANGLPISN---------LKLQLKAKDG--LLTLDPLSAKL-YGGSLSGSASLD 489 (604)
T ss_pred EEEEhhheEECCceecc---------cEEEEEecCC--eEEEeeeeEec-CCcEEEEEEEEe
Confidence 34555555555554442 2223344444 34444555555 777666666554
No 56
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=20.92 E-value=9.7e+02 Score=25.02 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=11.6
Q ss_pred cceecCCCeEEEEEEEE
Q 043069 261 PFSAARRTSWLTNVHLV 277 (349)
Q Consensus 261 ~F~Qg~rstt~l~v~l~ 277 (349)
++..++.++..+.+.+.
T Consensus 382 ~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLR 398 (434)
T ss_pred eEEECCCCEEEEEEEEE
Confidence 67777777776666553
No 57
>PF15399 DUF4620: Domain of unknown function (DUF4620)
Probab=20.42 E-value=1.1e+02 Score=25.36 Aligned_cols=11 Identities=9% Similarity=0.114 Sum_probs=7.2
Q ss_pred ccccchhHHHH
Q 043069 166 QRNSQGFCAIF 176 (349)
Q Consensus 166 ~r~~~clc~vL 176 (349)
-.|++|||++-
T Consensus 65 ~hwlac~ccl~ 75 (113)
T PF15399_consen 65 PHWLACCCCLS 75 (113)
T ss_pred chhhhhheeec
Confidence 46888776543
No 58
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=49 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhheeee
Q 043069 173 CAIFWIVIILGGIVVLIVYLLF 194 (349)
Q Consensus 173 c~vLlllvlLlGIavLIlwLVl 194 (349)
|++++++++++.++.+++|+.+
T Consensus 246 ~~ll~v~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 246 CILLLVGGPVGLIIGLIIAGIA 267 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHhh
Confidence 3333333344444444555443
Done!