Query 043069
Match_columns 349
No_of_seqs 132 out of 812
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 8.9E-05 3E-09 66.1 12.6 102 197-309 43-146 (174)
2 1xo8_A AT1G01470; structural g 97.7 5.9E-05 2E-09 65.5 6.1 102 197-309 20-123 (151)
3 3but_A Uncharacterized protein 97.6 0.00074 2.5E-08 57.8 12.1 65 220-285 17-82 (136)
4 3vmt_A Monofunctional glycosyl 43.2 14 0.00048 34.6 3.1 9 145-153 5-13 (263)
5 3kdp_B Sodium/potassium-transp 31.0 21 0.00073 33.7 2.2 37 166-202 13-52 (286)
6 3s8f_C Cytochrome C oxidase po 29.4 24 0.00083 23.1 1.6 16 177-192 9-24 (34)
7 3hd7_B Syntaxin-1A; membrane p 25.6 38 0.0013 27.2 2.5 16 176-191 90-105 (109)
8 1fm5_A Early activation antige 22.6 18 0.00062 31.3 0.0 10 170-179 40-49 (199)
9 2knc_B Integrin beta-3; transm 22.6 53 0.0018 25.1 2.7 17 176-192 17-33 (79)
10 2hfr_A Fowlicidin-3, cathelici 19.7 28 0.00095 21.3 0.4 6 92-97 1-6 (27)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.96 E-value=8.9e-05 Score=66.11 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccc-cceecCCCeEEEEEE
Q 043069 197 HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVE-PFSAARRTSWLTNVH 275 (349)
Q Consensus 197 k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp-~F~Qg~rstt~l~v~ 275 (349)
+.|+++|.++++..++.. .+.+.+.|+++|||. +.|.+..++..+.-+|..|+++..+ ++..++.+++.+.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vp 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVP 116 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEE
Confidence 789999999999987554 378899999999998 9999999999999999999999877 578899999998887
Q ss_pred EEecceecChhhHHHHHhccc-CCeEEEEEEEEEE
Q 043069 276 LVTSQVRLPFAATEQLKKEID-SNAVMFQVKGVFR 309 (349)
Q Consensus 276 l~~~~V~L~~~~a~~L~~dl~-~G~V~LdV~v~~r 309 (349)
+.... .....+.+++. .+.++..+++...
T Consensus 117 v~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 117 VKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEESH-----HHHHHTCCCCCSSEEECEEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcCCCCccceEEEEEEE
Confidence 64432 22334445553 3456666655443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.66 E-value=5.9e-05 Score=65.53 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=77.0
Q ss_pred CCCEEEEEEEEEeeeecCCCceEeEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeeccc-cceecCCCeEEEEEE
Q 043069 197 HNPRFDVSSVSLNAAYLDVGVLLNADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQYVE-PFSAARRTSWLTNVH 275 (349)
Q Consensus 197 k~P~fsV~sasLs~fnvs~~s~Lna~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~vp-~F~Qg~rstt~l~v~ 275 (349)
+.|+++|.++++..++. ....+.+.++++|||. +.+.+..++..+.-+|..|+++..+ ++..++++++.+.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence 57889999988887543 3468899999999998 9999999999999999999999876 688899999988776
Q ss_pred EEecceecChhhHHHHHhcc-cCCeEEEEEEEEEE
Q 043069 276 LVTSQVRLPFAATEQLKKEI-DSNAVMFQVKGVFR 309 (349)
Q Consensus 276 l~~~~V~L~~~~a~~L~~dl-~~G~V~LdV~v~~r 309 (349)
+..+. .....+.+++ ....++..+++...
T Consensus 94 v~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 94 VVVPY-----SILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp CCEEH-----HHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcccCCcccEEEEEEEE
Confidence 54332 2223333443 34567776666554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.61 E-value=0.00074 Score=57.81 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=55.7
Q ss_pred eEEEEEEEEEEcCCCeeEEEEcceEEEEEECCEEeeeec-cccceecCCCeEEEEEEEEecceecCh
Q 043069 220 NADLNVLANFTNPNKKVKVDFSYVVLDLYYGKTLIASQY-VEPFSAARRTSWLTNVHLVTSQVRLPF 285 (349)
Q Consensus 220 na~lsltLtv~NPNkkv~I~Yd~i~a~V~Y~G~~LG~a~-vp~F~Qg~rstt~l~v~l~~~~V~L~~ 285 (349)
.+.|.+.|++.|||. +.+.++.++..|+..|..||.+. ...+..++.+++.+.+.+..+.-.+..
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~ 82 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE 82 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence 578999999999997 99999999999999999999986 668999999988888877666554443
No 4
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=43.21 E-value=14 Score=34.62 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 043069 145 HHGQPHGPE 153 (349)
Q Consensus 145 ~~~~~h~~g 153 (349)
||+|+|..|
T Consensus 5 ~~~~~~~~~ 13 (263)
T 3vmt_A 5 HHHHHHSSG 13 (263)
T ss_dssp ---------
T ss_pred ccccccccC
Confidence 444444433
No 5
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=31.02 E-value=21 Score=33.70 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhe---eeecCCCCEEE
Q 043069 166 QRNSQGFCAIFWIVIILGGIVVLIVY---LLFRPHNPRFD 202 (349)
Q Consensus 166 ~r~~~clc~vLlllvlLlGIavLIlw---LVlRPk~P~fs 202 (349)
++|.+++..-+++-++|+|++++.+| +.+.++.|++.
T Consensus 13 ~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq 52 (286)
T 3kdp_B 13 GSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ 52 (286)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc
Confidence 47877775544444556666655555 34788999988
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=29.44 E-value=24 Score=23.09 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhee
Q 043069 177 WIVIILGGIVVLIVYL 192 (349)
Q Consensus 177 lllvlLlGIavLIlwL 192 (349)
++.++++|++++++|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3445667777777774
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=25.56 E-value=38 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhhe
Q 043069 176 FWIVIILGGIVVLIVY 191 (349)
Q Consensus 176 LlllvlLlGIavLIlw 191 (349)
++++++++.++++++.
T Consensus 90 l~~~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 90 IICCVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334444555555543
No 8
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Probab=22.64 E-value=18 Score=31.33 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=0.0
Q ss_pred chhHHHHHHH
Q 043069 170 QGFCAIFWIV 179 (349)
Q Consensus 170 ~clc~vLlll 179 (349)
+..|++++++
T Consensus 40 ~~~~~~l~~l 49 (199)
T 1fm5_A 40 PVLCAVMNVV 49 (199)
T ss_dssp ----------
T ss_pred eehHHHHHHH
Confidence 3345444333
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.63 E-value=53 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhee
Q 043069 176 FWIVIILGGIVVLIVYL 192 (349)
Q Consensus 176 LlllvlLlGIavLIlwL 192 (349)
+++.++++|++++++|-
T Consensus 17 vi~gilliGllllliwk 33 (79)
T 2knc_B 17 VMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34446677777777773
No 10
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=19.71 E-value=28 Score=21.29 Aligned_cols=6 Identities=67% Similarity=2.123 Sum_probs=0.0
Q ss_pred cccccc
Q 043069 92 RRYWPL 97 (349)
Q Consensus 92 ~~~~~~ 97 (349)
|||||+
T Consensus 1 kRF~P~ 6 (27)
T 2hfr_A 1 KRFWPL 6 (27)
T ss_dssp CCSCSS
T ss_pred CCcccc
Done!