Query 043070
Match_columns 414
No_of_seqs 339 out of 2463
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.2E-61 1.6E-65 505.1 26.3 404 4-413 56-517 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.3E-42 9.3E-47 326.1 11.4 240 103-344 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 4.7E-37 1E-41 339.2 23.9 269 96-396 182-506 (1153)
4 PRK04841 transcriptional regul 99.3 6.7E-11 1.5E-15 129.6 20.9 264 92-394 8-334 (903)
5 PRK00411 cdc6 cell division co 99.1 1.3E-08 2.9E-13 100.9 22.7 107 97-204 29-150 (394)
6 TIGR02928 orc1/cdc6 family rep 99.0 7.4E-08 1.6E-12 94.6 23.0 106 98-204 15-141 (365)
7 TIGR03015 pepcterm_ATPase puta 99.0 3.8E-08 8.2E-13 92.4 18.3 146 116-267 41-242 (269)
8 COG2909 MalT ATP-dependent tra 99.0 2.6E-08 5.7E-13 102.6 17.6 269 88-394 9-340 (894)
9 TIGR00635 ruvB Holliday juncti 98.9 3.3E-08 7.1E-13 94.6 14.7 236 98-371 4-290 (305)
10 PF01637 Arch_ATPase: Archaeal 98.9 1E-08 2.2E-13 93.7 9.4 43 100-142 1-44 (234)
11 PRK00080 ruvB Holliday junctio 98.8 4.3E-08 9.4E-13 94.7 12.4 245 97-371 24-311 (328)
12 COG3903 Predicted ATPase [Gene 98.8 7.8E-09 1.7E-13 98.8 6.7 261 117-397 13-319 (414)
13 PTZ00112 origin recognition co 98.5 1.8E-05 3.9E-10 83.0 21.3 266 97-371 754-1087(1164)
14 PRK13342 recombination factor 98.5 3.6E-06 7.7E-11 84.0 16.0 47 96-142 10-60 (413)
15 PTZ00202 tuzin; Provisional 98.5 8.7E-07 1.9E-11 86.1 10.8 101 93-199 257-368 (550)
16 COG2256 MGS1 ATPase related to 98.4 1.5E-06 3.2E-11 83.1 10.1 106 97-221 23-135 (436)
17 PF13191 AAA_16: AAA ATPase do 98.4 6.7E-07 1.5E-11 78.6 7.0 44 99-142 1-48 (185)
18 PF13401 AAA_22: AAA domain; P 98.3 6.8E-07 1.5E-11 74.0 5.5 86 117-204 3-99 (131)
19 cd01128 rho_factor Transcripti 98.3 6.3E-07 1.4E-11 82.6 3.4 92 110-204 7-115 (249)
20 PRK06893 DNA replication initi 98.2 1E-05 2.3E-10 74.0 10.6 45 98-142 16-63 (229)
21 PF05496 RuvB_N: Holliday junc 98.2 1.1E-05 2.3E-10 72.1 9.8 48 95-142 21-74 (233)
22 COG3899 Predicted ATPase [Gene 98.2 0.00017 3.6E-09 78.0 20.4 272 99-391 1-385 (849)
23 COG1474 CDC6 Cdc6-related prot 98.2 5.4E-05 1.2E-09 73.8 14.7 106 98-205 17-136 (366)
24 cd00009 AAA The AAA+ (ATPases 98.1 9.8E-06 2.1E-10 67.7 8.2 42 101-142 1-43 (151)
25 PRK09376 rho transcription ter 98.1 5E-06 1.1E-10 80.3 6.2 93 108-204 158-268 (416)
26 PRK04195 replication factor C 98.1 0.00026 5.7E-09 72.1 18.7 46 97-142 13-63 (482)
27 COG2255 RuvB Holliday junction 98.0 0.00048 1E-08 63.3 15.7 47 96-142 24-76 (332)
28 PF05729 NACHT: NACHT domain 97.9 1.3E-05 2.8E-10 68.9 5.5 78 119-205 1-94 (166)
29 TIGR00767 rho transcription te 97.9 1.6E-05 3.5E-10 77.2 6.3 87 116-204 166-267 (415)
30 KOG2028 ATPase related to the 97.8 4.3E-05 9.3E-10 72.1 5.6 107 98-221 138-253 (554)
31 PRK08118 topology modulation p 97.7 0.0001 2.2E-09 64.0 7.2 36 119-154 2-37 (167)
32 PRK13341 recombination factor 97.7 7.3E-05 1.6E-09 79.0 7.3 46 97-142 27-76 (725)
33 KOG2543 Origin recognition com 97.7 0.00018 3.8E-09 68.6 9.0 107 98-210 6-133 (438)
34 PRK14963 DNA polymerase III su 97.7 0.00074 1.6E-08 68.8 13.8 45 98-142 14-60 (504)
35 PLN03025 replication factor C 97.6 0.0003 6.4E-09 67.8 9.8 46 97-142 12-58 (319)
36 KOG0991 Replication factor C, 97.6 0.00095 2.1E-08 59.6 11.9 92 98-205 27-126 (333)
37 PRK08727 hypothetical protein; 97.6 0.00057 1.2E-08 62.7 11.1 45 98-142 19-65 (233)
38 PRK11331 5-methylcytosine-spec 97.6 0.00031 6.8E-09 69.4 9.5 104 98-205 175-285 (459)
39 PF00004 AAA: ATPase family as 97.6 6.7E-05 1.5E-09 61.8 4.2 22 121-142 1-22 (132)
40 PF13173 AAA_14: AAA domain 97.6 0.00024 5.2E-09 58.6 7.0 78 118-210 2-79 (128)
41 CHL00095 clpC Clp protease ATP 97.6 0.00017 3.7E-09 78.1 7.7 45 98-142 179-224 (821)
42 TIGR03420 DnaA_homol_Hda DnaA 97.6 0.00026 5.7E-09 64.4 7.9 45 98-142 15-62 (226)
43 PRK07261 topology modulation p 97.5 0.0002 4.3E-09 62.4 6.0 67 120-203 2-68 (171)
44 KOG2227 Pre-initiation complex 97.5 0.0015 3.3E-08 63.9 12.1 123 96-221 148-291 (529)
45 TIGR02903 spore_lon_C ATP-depe 97.5 0.0015 3.2E-08 68.4 13.0 47 96-142 152-199 (615)
46 TIGR02639 ClpA ATP-dependent C 97.4 0.00022 4.7E-09 76.4 6.4 45 98-142 182-227 (731)
47 PF04665 Pox_A32: Poxvirus A32 97.4 0.00013 2.9E-09 66.4 3.9 34 119-155 14-47 (241)
48 PRK09087 hypothetical protein; 97.4 0.0021 4.5E-08 58.7 11.3 26 117-142 43-68 (226)
49 PRK12377 putative replication 97.4 0.0034 7.3E-08 57.9 12.6 73 117-203 100-174 (248)
50 PRK05541 adenylylsulfate kinas 97.4 0.00022 4.8E-09 62.3 4.5 80 117-201 6-86 (176)
51 PF13207 AAA_17: AAA domain; P 97.3 0.00018 4E-09 58.5 3.7 23 120-142 1-23 (121)
52 PRK14949 DNA polymerase III su 97.3 0.0078 1.7E-07 64.4 16.4 45 98-142 16-62 (944)
53 PHA00729 NTP-binding motif con 97.3 0.00076 1.6E-08 60.9 7.7 35 108-142 7-41 (226)
54 PRK08116 hypothetical protein; 97.3 0.00046 1E-08 64.6 6.6 72 119-202 115-188 (268)
55 smart00382 AAA ATPases associa 97.3 0.00057 1.2E-08 56.3 6.5 24 119-142 3-26 (148)
56 TIGR01242 26Sp45 26S proteasom 97.3 0.0003 6.5E-09 69.1 5.4 45 98-142 122-180 (364)
57 PRK10865 protein disaggregatio 97.3 0.0003 6.5E-09 76.3 5.8 45 98-142 178-223 (857)
58 PF00308 Bac_DnaA: Bacterial d 97.3 0.0019 4.1E-08 58.6 10.2 74 118-204 34-109 (219)
59 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00033 7.3E-09 75.8 5.9 46 97-142 186-232 (852)
60 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00038 8.2E-09 75.7 6.0 45 98-142 173-218 (852)
61 PRK05564 DNA polymerase III su 97.3 0.0038 8.2E-08 60.0 12.3 45 98-142 4-50 (313)
62 PRK12323 DNA polymerase III su 97.3 0.0028 6.1E-08 65.4 11.8 46 97-142 15-62 (700)
63 PRK03992 proteasome-activating 97.3 0.00042 9.2E-09 68.5 5.8 45 98-142 131-189 (389)
64 PRK14956 DNA polymerase III su 97.3 0.002 4.3E-08 64.6 10.4 46 97-142 17-64 (484)
65 PF05673 DUF815: Protein of un 97.2 0.00059 1.3E-08 61.9 6.0 91 92-202 21-116 (249)
66 PRK12608 transcription termina 97.2 0.001 2.2E-08 64.4 7.8 98 105-204 119-232 (380)
67 PRK07003 DNA polymerase III su 97.2 0.0028 6E-08 66.4 11.2 45 98-142 16-62 (830)
68 PRK10536 hypothetical protein; 97.2 0.0048 1E-07 56.7 11.3 48 93-142 50-98 (262)
69 KOG0989 Replication factor C, 97.2 0.0039 8.5E-08 58.0 10.5 56 97-153 35-91 (346)
70 TIGR02397 dnaX_nterm DNA polym 97.1 0.0075 1.6E-07 58.8 13.1 46 97-142 13-60 (355)
71 PRK06645 DNA polymerase III su 97.1 0.0091 2E-07 60.8 13.9 46 97-142 20-67 (507)
72 PF05621 TniB: Bacterial TniB 97.1 0.0038 8.2E-08 58.5 10.1 94 105-203 45-156 (302)
73 PRK05896 DNA polymerase III su 97.1 0.0062 1.3E-07 62.8 12.4 46 97-142 15-62 (605)
74 PF14516 AAA_35: AAA-like doma 97.1 0.017 3.6E-07 55.9 14.8 165 96-270 9-246 (331)
75 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00088 1.9E-08 64.5 5.5 44 99-142 52-102 (361)
76 PTZ00454 26S protease regulato 97.1 0.0011 2.3E-08 65.6 6.1 91 98-203 145-249 (398)
77 PRK12402 replication factor C 97.0 0.00076 1.7E-08 65.3 5.0 45 98-142 15-60 (337)
78 PRK11034 clpA ATP-dependent Cl 97.0 0.0013 2.9E-08 70.0 7.1 45 98-142 186-231 (758)
79 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0022 4.9E-08 64.7 8.1 92 98-204 190-294 (802)
80 PRK06696 uridine kinase; Valid 97.0 0.0011 2.4E-08 60.4 5.6 40 103-142 3-46 (223)
81 PRK06526 transposase; Provisio 97.0 0.002 4.3E-08 59.8 7.3 72 118-204 98-171 (254)
82 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0011 2.4E-08 61.6 5.3 85 117-204 68-175 (274)
83 PRK05642 DNA replication initi 97.0 0.0041 8.9E-08 57.0 8.8 25 118-142 45-69 (234)
84 TIGR00602 rad24 checkpoint pro 96.9 0.0018 3.9E-08 67.4 7.0 49 94-142 80-134 (637)
85 PRK08691 DNA polymerase III su 96.9 0.01 2.2E-07 62.0 12.0 45 98-142 16-62 (709)
86 PRK08181 transposase; Validate 96.9 0.0025 5.5E-08 59.5 6.8 81 106-203 96-178 (269)
87 TIGR03689 pup_AAA proteasome A 96.9 0.0012 2.6E-08 67.0 4.8 45 98-142 182-240 (512)
88 PRK14087 dnaA chromosomal repl 96.9 0.0051 1.1E-07 62.0 9.4 76 118-204 141-218 (450)
89 PRK07952 DNA replication prote 96.8 0.0048 1E-07 56.8 8.1 87 105-204 84-174 (244)
90 PRK14951 DNA polymerase III su 96.8 0.019 4.1E-07 59.8 13.1 46 97-142 15-62 (618)
91 PRK14950 DNA polymerase III su 96.8 0.013 2.7E-07 61.3 11.7 46 97-142 15-62 (585)
92 COG4088 Predicted nucleotide k 96.8 0.00088 1.9E-08 58.7 2.7 24 119-142 2-25 (261)
93 PRK00625 shikimate kinase; Pro 96.8 0.0047 1E-07 53.8 7.3 23 120-142 2-24 (173)
94 PRK06547 hypothetical protein; 96.8 0.0022 4.7E-08 55.8 5.2 34 109-142 6-39 (172)
95 PRK14088 dnaA chromosomal repl 96.8 0.0026 5.7E-08 63.9 6.3 85 107-204 118-206 (440)
96 TIGR01241 FtsH_fam ATP-depende 96.7 0.0051 1.1E-07 63.0 8.4 90 98-203 55-158 (495)
97 PRK00440 rfc replication facto 96.7 0.0019 4.1E-08 62.0 5.0 46 97-142 16-62 (319)
98 PRK09183 transposase/IS protei 96.7 0.0048 1E-07 57.5 7.5 25 118-142 102-126 (259)
99 COG0563 Adk Adenylate kinase a 96.7 0.0066 1.4E-07 53.1 7.9 34 120-155 2-35 (178)
100 PRK07667 uridine kinase; Provi 96.7 0.0024 5.3E-08 56.7 5.2 37 106-142 3-41 (193)
101 PF00448 SRP54: SRP54-type pro 96.7 0.0024 5.2E-08 56.8 5.1 81 118-201 1-92 (196)
102 COG0572 Udk Uridine kinase [Nu 96.7 0.0031 6.7E-08 56.3 5.7 74 117-193 7-85 (218)
103 COG1222 RPT1 ATP-dependent 26S 96.7 0.0071 1.5E-07 57.5 8.3 46 101-149 154-213 (406)
104 TIGR02012 tigrfam_recA protein 96.7 0.0034 7.4E-08 59.9 6.2 86 116-204 53-145 (321)
105 COG1484 DnaC DNA replication p 96.7 0.0045 9.7E-08 57.5 6.7 83 107-204 96-179 (254)
106 PF13238 AAA_18: AAA domain; P 96.7 0.0016 3.4E-08 53.3 3.3 22 121-142 1-22 (129)
107 TIGR02237 recomb_radB DNA repa 96.7 0.0034 7.5E-08 56.4 5.8 36 117-155 11-46 (209)
108 cd01393 recA_like RecA is a b 96.6 0.0089 1.9E-07 54.3 8.4 84 117-203 18-125 (226)
109 PLN00020 ribulose bisphosphate 96.6 0.0034 7.4E-08 60.4 5.6 27 116-142 146-172 (413)
110 PRK10867 signal recognition pa 96.6 0.0065 1.4E-07 60.6 7.8 26 117-142 99-124 (433)
111 PRK09361 radB DNA repair and r 96.6 0.0043 9.3E-08 56.5 6.0 26 117-142 22-47 (225)
112 PF00485 PRK: Phosphoribulokin 96.6 0.0019 4.2E-08 57.4 3.7 75 120-196 1-87 (194)
113 cd00983 recA RecA is a bacter 96.6 0.0038 8.2E-08 59.7 5.8 84 117-203 54-144 (325)
114 PRK08233 hypothetical protein; 96.6 0.002 4.2E-08 56.4 3.6 25 118-142 3-27 (182)
115 COG0466 Lon ATP-dependent Lon 96.6 0.003 6.5E-08 65.1 5.3 45 98-142 323-374 (782)
116 PRK08939 primosomal protein Dn 96.6 0.0061 1.3E-07 58.1 7.2 87 102-203 135-228 (306)
117 KOG0736 Peroxisome assembly fa 96.6 0.024 5.2E-07 59.0 11.6 90 98-204 672-776 (953)
118 PRK12422 chromosomal replicati 96.6 0.0043 9.2E-08 62.4 6.3 72 118-204 141-214 (445)
119 cd01394 radB RadB. The archaea 96.6 0.0077 1.7E-07 54.5 7.4 26 117-142 18-43 (218)
120 PRK05480 uridine/cytidine kina 96.5 0.0024 5.2E-08 57.4 4.0 27 116-142 4-30 (209)
121 PTZ00301 uridine kinase; Provi 96.5 0.0024 5.1E-08 57.5 3.9 26 117-142 2-27 (210)
122 COG1618 Predicted nucleotide k 96.5 0.0021 4.6E-08 54.2 3.2 25 118-142 5-29 (179)
123 PRK00771 signal recognition pa 96.5 0.01 2.3E-07 59.2 8.8 26 117-142 94-119 (437)
124 PRK14527 adenylate kinase; Pro 96.5 0.012 2.6E-07 52.1 8.3 37 117-155 5-41 (191)
125 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0065 1.4E-07 53.3 6.5 23 120-142 1-23 (183)
126 PF01583 APS_kinase: Adenylyls 96.5 0.0045 9.8E-08 52.6 5.3 25 118-142 2-26 (156)
127 PTZ00361 26 proteosome regulat 96.5 0.0033 7.2E-08 62.7 5.1 43 100-142 185-241 (438)
128 PF13671 AAA_33: AAA domain; P 96.5 0.0023 5E-08 53.5 3.5 23 120-142 1-23 (143)
129 PRK09354 recA recombinase A; P 96.5 0.0047 1E-07 59.6 5.9 85 117-204 59-150 (349)
130 PF02562 PhoH: PhoH-like prote 96.5 0.0021 4.6E-08 57.3 3.3 48 105-155 8-55 (205)
131 PRK06762 hypothetical protein; 96.5 0.0026 5.7E-08 54.9 3.7 24 119-142 3-26 (166)
132 TIGR00362 DnaA chromosomal rep 96.5 0.0051 1.1E-07 61.3 6.3 73 118-204 136-211 (405)
133 PRK14086 dnaA chromosomal repl 96.5 0.02 4.3E-07 59.2 10.6 72 118-204 314-389 (617)
134 cd02019 NK Nucleoside/nucleoti 96.5 0.0028 6E-08 46.1 3.1 23 120-142 1-23 (69)
135 COG0703 AroK Shikimate kinase 96.5 0.011 2.4E-07 50.9 7.2 78 119-199 3-102 (172)
136 PRK00149 dnaA chromosomal repl 96.4 0.0054 1.2E-07 62.0 6.2 72 118-204 148-223 (450)
137 TIGR00959 ffh signal recogniti 96.4 0.011 2.3E-07 59.0 8.0 25 118-142 99-123 (428)
138 CHL00176 ftsH cell division pr 96.4 0.011 2.3E-07 62.0 8.3 91 98-204 183-287 (638)
139 PRK15455 PrkA family serine pr 96.4 0.0039 8.5E-08 63.4 4.8 45 98-142 76-127 (644)
140 TIGR00235 udk uridine kinase. 96.4 0.0032 7E-08 56.5 3.9 27 116-142 4-30 (207)
141 PRK06921 hypothetical protein; 96.4 0.0087 1.9E-07 56.0 6.9 26 117-142 116-141 (266)
142 PHA02544 44 clamp loader, smal 96.4 0.004 8.7E-08 59.8 4.8 47 96-142 19-67 (316)
143 PRK03839 putative kinase; Prov 96.4 0.003 6.5E-08 55.4 3.5 23 120-142 2-24 (180)
144 PRK14962 DNA polymerase III su 96.4 0.0048 1E-07 62.4 5.3 46 97-142 13-60 (472)
145 KOG0744 AAA+-type ATPase [Post 96.4 0.0096 2.1E-07 55.9 6.7 76 118-202 177-260 (423)
146 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0033 7.2E-08 55.2 3.7 26 117-142 2-27 (188)
147 PF01695 IstB_IS21: IstB-like 96.4 0.0033 7.3E-08 55.0 3.6 73 117-204 46-120 (178)
148 KOG1969 DNA replication checkp 96.4 0.0061 1.3E-07 62.8 5.9 68 117-205 325-400 (877)
149 PRK10463 hydrogenase nickel in 96.3 0.015 3.2E-07 54.6 8.0 94 107-203 93-195 (290)
150 KOG0734 AAA+-type ATPase conta 96.3 0.0098 2.1E-07 59.3 7.0 87 99-204 305-408 (752)
151 KOG0733 Nuclear AAA ATPase (VC 96.3 0.018 3.9E-07 58.4 8.9 30 117-149 544-573 (802)
152 TIGR02881 spore_V_K stage V sp 96.3 0.0061 1.3E-07 56.9 5.3 45 98-142 6-66 (261)
153 cd02027 APSK Adenosine 5'-phos 96.3 0.0067 1.5E-07 51.4 5.1 23 120-142 1-23 (149)
154 PRK14961 DNA polymerase III su 96.3 0.0064 1.4E-07 59.7 5.6 46 97-142 15-62 (363)
155 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.011 2.4E-07 54.3 6.7 37 116-155 19-55 (237)
156 PRK09270 nucleoside triphospha 96.3 0.0071 1.5E-07 55.2 5.4 27 116-142 31-57 (229)
157 TIGR03499 FlhF flagellar biosy 96.2 0.015 3.2E-07 55.0 7.5 26 117-142 193-218 (282)
158 cd01131 PilT Pilus retraction 96.2 0.0037 7.9E-08 55.8 3.3 86 119-208 2-90 (198)
159 PRK04296 thymidine kinase; Pro 96.2 0.0033 7.1E-08 55.7 2.9 80 119-202 3-88 (190)
160 cd03115 SRP The signal recogni 96.2 0.008 1.7E-07 52.2 5.3 23 120-142 2-24 (173)
161 KOG1514 Origin recognition com 96.2 0.08 1.7E-06 54.7 13.0 167 98-269 396-609 (767)
162 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.011 2.4E-07 54.1 6.5 26 117-142 18-43 (235)
163 PF08433 KTI12: Chromatin asso 96.2 0.0052 1.1E-07 57.5 4.3 24 119-142 2-25 (270)
164 TIGR01243 CDC48 AAA family ATP 96.2 0.011 2.3E-07 63.6 7.2 44 99-142 179-236 (733)
165 COG3267 ExeA Type II secretory 96.2 0.081 1.8E-06 48.3 11.5 86 116-204 49-143 (269)
166 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0056 1.2E-07 56.7 4.4 23 120-142 1-23 (249)
167 PRK04040 adenylate kinase; Pro 96.2 0.0048 1E-07 54.5 3.7 47 118-168 2-48 (188)
168 PRK06835 DNA replication prote 96.2 0.008 1.7E-07 57.9 5.4 74 118-204 183-258 (329)
169 PRK03846 adenylylsulfate kinas 96.2 0.0078 1.7E-07 53.7 5.0 27 116-142 22-48 (198)
170 PRK14955 DNA polymerase III su 96.2 0.0077 1.7E-07 59.8 5.4 46 97-142 15-62 (397)
171 PRK00131 aroK shikimate kinase 96.1 0.0055 1.2E-07 53.0 3.8 25 118-142 4-28 (175)
172 TIGR00763 lon ATP-dependent pr 96.1 0.017 3.6E-07 62.4 8.2 45 98-142 320-371 (775)
173 KOG2004 Mitochondrial ATP-depe 96.1 0.0069 1.5E-07 62.4 4.8 50 98-149 411-467 (906)
174 cd01121 Sms Sms (bacterial rad 96.1 0.011 2.3E-07 58.0 6.1 81 117-203 81-169 (372)
175 COG0542 clpA ATP-binding subun 96.1 0.014 3E-07 61.6 7.2 99 98-203 170-273 (786)
176 KOG0730 AAA+-type ATPase [Post 96.1 0.41 8.8E-06 49.4 17.1 49 116-167 466-524 (693)
177 PRK14971 DNA polymerase III su 96.1 0.098 2.1E-06 54.8 13.1 45 98-142 17-63 (614)
178 COG1102 Cmk Cytidylate kinase 96.0 0.0053 1.1E-07 51.9 3.0 44 120-169 2-45 (179)
179 PRK03731 aroL shikimate kinase 96.0 0.02 4.2E-07 49.6 6.7 35 119-155 3-37 (171)
180 COG0593 DnaA ATPase involved i 96.0 0.038 8.2E-07 54.3 9.3 71 117-203 112-186 (408)
181 cd02020 CMPK Cytidine monophos 96.0 0.0056 1.2E-07 51.3 3.1 23 120-142 1-23 (147)
182 PRK14722 flhF flagellar biosyn 96.0 0.016 3.5E-07 56.6 6.5 80 118-202 137-225 (374)
183 COG4608 AppF ABC-type oligopep 96.0 0.02 4.3E-07 52.7 6.6 90 116-205 37-140 (268)
184 PRK00889 adenylylsulfate kinas 96.0 0.0082 1.8E-07 52.3 4.0 26 117-142 3-28 (175)
185 PRK06217 hypothetical protein; 95.9 0.0061 1.3E-07 53.6 3.2 24 119-142 2-25 (183)
186 PTZ00088 adenylate kinase 1; P 95.9 0.02 4.3E-07 52.2 6.6 23 120-142 8-30 (229)
187 cd02023 UMPK Uridine monophosp 95.9 0.0055 1.2E-07 54.5 2.9 23 120-142 1-23 (198)
188 PF06309 Torsin: Torsin; Inte 95.9 0.015 3.3E-07 47.3 5.2 45 98-142 25-77 (127)
189 TIGR02322 phosphon_PhnN phosph 95.9 0.0068 1.5E-07 53.0 3.4 24 119-142 2-25 (179)
190 PRK14957 DNA polymerase III su 95.9 0.01 2.2E-07 60.9 5.0 45 98-142 16-62 (546)
191 TIGR00150 HI0065_YjeE ATPase, 95.9 0.016 3.5E-07 47.9 5.3 38 105-142 7-46 (133)
192 cd02024 NRK1 Nicotinamide ribo 95.9 0.0062 1.3E-07 53.7 3.0 23 120-142 1-23 (187)
193 cd02025 PanK Pantothenate kina 95.9 0.006 1.3E-07 55.4 3.0 23 120-142 1-23 (220)
194 PRK13947 shikimate kinase; Pro 95.9 0.0077 1.7E-07 52.1 3.5 23 120-142 3-25 (171)
195 TIGR00064 ftsY signal recognit 95.9 0.024 5.2E-07 53.2 7.0 26 117-142 71-96 (272)
196 PF00406 ADK: Adenylate kinase 95.9 0.022 4.7E-07 48.3 6.2 75 123-203 1-84 (151)
197 PRK14974 cell division protein 95.8 0.05 1.1E-06 52.5 9.2 26 117-142 139-164 (336)
198 cd00227 CPT Chloramphenicol (C 95.8 0.0094 2E-07 52.0 3.9 24 119-142 3-26 (175)
199 PRK06067 flagellar accessory p 95.8 0.025 5.4E-07 51.8 6.9 26 117-142 24-49 (234)
200 COG1428 Deoxynucleoside kinase 95.8 0.0079 1.7E-07 53.2 3.3 25 118-142 4-28 (216)
201 PRK08084 DNA replication initi 95.8 0.019 4.1E-07 52.7 6.0 38 105-142 32-69 (235)
202 COG1875 NYN ribonuclease and A 95.8 0.015 3.2E-07 55.5 5.3 38 102-139 228-266 (436)
203 CHL00195 ycf46 Ycf46; Provisio 95.8 0.019 4.2E-07 58.2 6.5 45 98-142 228-283 (489)
204 PRK12723 flagellar biosynthesi 95.8 0.024 5.3E-07 55.7 7.0 82 117-202 173-264 (388)
205 PRK04328 hypothetical protein; 95.8 0.026 5.6E-07 52.3 6.9 26 117-142 22-47 (249)
206 PRK14960 DNA polymerase III su 95.8 0.012 2.6E-07 61.1 4.9 45 98-142 15-61 (702)
207 PRK04301 radA DNA repair and r 95.8 0.035 7.7E-07 53.3 8.0 26 117-142 101-126 (317)
208 PRK14530 adenylate kinase; Pro 95.8 0.0086 1.9E-07 54.1 3.5 24 119-142 4-27 (215)
209 PRK08903 DnaA regulatory inact 95.8 0.02 4.3E-07 52.1 5.9 45 98-142 18-66 (227)
210 PRK14964 DNA polymerase III su 95.8 0.012 2.6E-07 59.5 4.8 46 97-142 12-59 (491)
211 cd02028 UMPK_like Uridine mono 95.8 0.0082 1.8E-07 52.6 3.2 23 120-142 1-23 (179)
212 cd02021 GntK Gluconate kinase 95.7 0.0078 1.7E-07 50.9 3.0 23 120-142 1-23 (150)
213 PF00154 RecA: recA bacterial 95.7 0.012 2.7E-07 56.1 4.5 85 117-204 52-143 (322)
214 TIGR01351 adk adenylate kinase 95.7 0.039 8.5E-07 49.6 7.7 22 121-142 2-23 (210)
215 PRK00279 adk adenylate kinase; 95.7 0.043 9.4E-07 49.5 7.9 23 120-142 2-24 (215)
216 PRK11889 flhF flagellar biosyn 95.7 0.03 6.5E-07 54.8 7.0 26 117-142 240-265 (436)
217 PF03205 MobB: Molybdopterin g 95.7 0.011 2.5E-07 49.5 3.7 24 119-142 1-24 (140)
218 PRK14528 adenylate kinase; Pro 95.7 0.059 1.3E-06 47.5 8.4 24 119-142 2-25 (186)
219 TIGR00554 panK_bact pantothena 95.7 0.015 3.2E-07 54.9 4.8 27 116-142 60-86 (290)
220 TIGR00678 holB DNA polymerase 95.7 0.05 1.1E-06 47.9 8.0 36 107-142 2-38 (188)
221 PF00910 RNA_helicase: RNA hel 95.7 0.0087 1.9E-07 47.6 2.8 22 121-142 1-22 (107)
222 cd00464 SK Shikimate kinase (S 95.7 0.0099 2.1E-07 50.3 3.3 33 121-155 2-34 (154)
223 COG1936 Predicted nucleotide k 95.7 0.0085 1.8E-07 51.2 2.8 20 120-139 2-21 (180)
224 PRK13975 thymidylate kinase; P 95.7 0.011 2.3E-07 52.5 3.6 24 119-142 3-26 (196)
225 PRK13949 shikimate kinase; Pro 95.7 0.011 2.3E-07 51.4 3.5 24 119-142 2-25 (169)
226 TIGR00073 hypB hydrogenase acc 95.6 0.015 3.2E-07 52.3 4.5 32 111-142 15-46 (207)
227 TIGR03263 guanyl_kin guanylate 95.6 0.0091 2E-07 52.2 3.0 24 119-142 2-25 (180)
228 COG2607 Predicted ATPase (AAA+ 95.6 0.023 5E-07 51.2 5.4 51 92-142 54-109 (287)
229 cd01428 ADK Adenylate kinase ( 95.6 0.04 8.6E-07 48.6 7.1 22 121-142 2-23 (194)
230 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.039 8.4E-07 50.3 7.2 26 117-142 19-44 (229)
231 PRK14970 DNA polymerase III su 95.6 0.018 3.9E-07 56.5 5.3 46 97-142 16-63 (367)
232 cd01124 KaiC KaiC is a circadi 95.6 0.021 4.5E-07 50.0 5.2 23 120-142 1-23 (187)
233 TIGR02902 spore_lonB ATP-depen 95.6 0.023 5.1E-07 58.5 6.3 45 98-142 65-110 (531)
234 PRK14958 DNA polymerase III su 95.6 0.015 3.3E-07 59.4 4.8 46 97-142 15-62 (509)
235 PRK12597 F0F1 ATP synthase sub 95.6 0.026 5.7E-07 56.6 6.3 86 117-204 142-249 (461)
236 PRK12678 transcription termina 95.6 0.012 2.6E-07 59.8 3.9 94 108-204 405-515 (672)
237 PF07728 AAA_5: AAA domain (dy 95.6 0.012 2.6E-07 49.0 3.4 22 121-142 2-23 (139)
238 PRK00300 gmk guanylate kinase; 95.5 0.013 2.7E-07 52.5 3.6 26 117-142 4-29 (205)
239 PRK13765 ATP-dependent proteas 95.5 0.018 3.9E-07 60.2 5.1 68 96-167 29-104 (637)
240 PRK08972 fliI flagellum-specif 95.5 0.014 3.1E-07 57.8 4.2 27 116-142 160-186 (444)
241 TIGR01425 SRP54_euk signal rec 95.5 0.05 1.1E-06 54.1 7.9 26 117-142 99-124 (429)
242 PRK10751 molybdopterin-guanine 95.5 0.015 3.2E-07 50.5 3.7 26 117-142 5-30 (173)
243 PRK09112 DNA polymerase III su 95.5 0.026 5.6E-07 55.0 5.8 50 93-142 18-69 (351)
244 cd00071 GMPK Guanosine monopho 95.4 0.012 2.7E-07 49.1 3.0 23 120-142 1-23 (137)
245 TIGR01313 therm_gnt_kin carboh 95.4 0.01 2.3E-07 50.9 2.6 22 121-142 1-22 (163)
246 PRK12339 2-phosphoglycerate ki 95.4 0.015 3.3E-07 51.7 3.7 25 118-142 3-27 (197)
247 PRK10865 protein disaggregatio 95.4 0.06 1.3E-06 58.7 9.0 45 98-142 568-622 (857)
248 COG0237 CoaE Dephospho-CoA kin 95.4 0.048 1E-06 48.6 6.9 50 118-170 2-58 (201)
249 PRK12727 flagellar biosynthesi 95.4 0.036 7.8E-07 56.2 6.7 26 117-142 349-374 (559)
250 PRK05703 flhF flagellar biosyn 95.4 0.043 9.3E-07 54.8 7.3 25 118-142 221-245 (424)
251 PRK05800 cobU adenosylcobinami 95.4 0.051 1.1E-06 47.1 6.8 24 119-142 2-25 (170)
252 COG0468 RecA RecA/RadA recombi 95.4 0.029 6.3E-07 52.5 5.6 84 116-203 58-152 (279)
253 CHL00181 cbbX CbbX; Provisiona 95.4 0.024 5.1E-07 53.7 5.1 24 119-142 60-83 (287)
254 PRK14954 DNA polymerase III su 95.4 0.021 4.5E-07 59.6 5.0 45 98-142 16-62 (620)
255 COG1136 SalX ABC-type antimicr 95.4 0.051 1.1E-06 49.1 6.8 25 117-141 30-54 (226)
256 TIGR01243 CDC48 AAA family ATP 95.4 0.062 1.3E-06 57.8 8.7 45 98-142 453-511 (733)
257 PRK05057 aroK shikimate kinase 95.4 0.016 3.5E-07 50.4 3.6 25 118-142 4-28 (172)
258 TIGR03345 VI_ClpV1 type VI sec 95.4 0.053 1.1E-06 59.0 8.2 45 98-142 566-620 (852)
259 TIGR02639 ClpA ATP-dependent C 95.4 0.057 1.2E-06 58.0 8.4 45 98-142 454-508 (731)
260 PRK13531 regulatory ATPase Rav 95.4 0.024 5.2E-07 56.9 5.2 43 98-142 20-63 (498)
261 PRK13948 shikimate kinase; Pro 95.3 0.019 4.1E-07 50.4 3.9 26 117-142 9-34 (182)
262 TIGR03575 selen_PSTK_euk L-ser 95.3 0.032 6.9E-07 53.8 5.8 22 121-142 2-23 (340)
263 KOG2228 Origin recognition com 95.3 0.071 1.5E-06 50.5 7.8 107 98-204 24-149 (408)
264 PRK12726 flagellar biosynthesi 95.3 0.049 1.1E-06 53.1 7.0 81 117-202 205-295 (407)
265 PF07726 AAA_3: ATPase family 95.3 0.011 2.3E-07 48.4 2.1 27 121-150 2-28 (131)
266 PRK04182 cytidylate kinase; Pr 95.3 0.016 3.4E-07 50.4 3.4 23 120-142 2-24 (180)
267 COG0542 clpA ATP-binding subun 95.3 0.064 1.4E-06 56.8 8.3 103 97-205 490-606 (786)
268 PRK10078 ribose 1,5-bisphospho 95.3 0.014 3.1E-07 51.4 3.1 24 119-142 3-26 (186)
269 PRK11823 DNA repair protein Ra 95.3 0.044 9.5E-07 55.2 6.9 81 117-203 79-167 (446)
270 PF06745 KaiC: KaiC; InterPro 95.3 0.01 2.2E-07 54.0 2.2 26 117-142 18-43 (226)
271 PF00158 Sigma54_activat: Sigm 95.3 0.027 5.9E-07 48.7 4.7 43 100-142 1-46 (168)
272 KOG2170 ATPase of the AAA+ sup 95.3 0.064 1.4E-06 50.0 7.2 97 98-205 82-191 (344)
273 PRK09111 DNA polymerase III su 95.3 0.023 5E-07 59.1 5.0 46 97-142 23-70 (598)
274 KOG0729 26S proteasome regulat 95.3 0.036 7.8E-07 50.7 5.5 45 102-149 181-239 (435)
275 KOG1532 GTPase XAB1, interacts 95.2 0.016 3.5E-07 53.1 3.2 27 116-142 17-43 (366)
276 PRK13946 shikimate kinase; Pro 95.2 0.019 4.1E-07 50.6 3.6 25 118-142 10-34 (184)
277 cd01672 TMPK Thymidine monopho 95.2 0.018 3.9E-07 50.9 3.5 24 119-142 1-24 (200)
278 COG1126 GlnQ ABC-type polar am 95.2 0.065 1.4E-06 47.7 6.8 25 117-141 27-51 (240)
279 PLN02200 adenylate kinase fami 95.2 0.02 4.2E-07 52.5 3.8 26 117-142 42-67 (234)
280 PF03266 NTPase_1: NTPase; In 95.2 0.018 3.9E-07 49.9 3.4 22 121-142 2-23 (168)
281 PRK14721 flhF flagellar biosyn 95.2 0.066 1.4E-06 53.2 7.7 26 117-142 190-215 (420)
282 PF00006 ATP-synt_ab: ATP synt 95.2 0.036 7.7E-07 50.0 5.4 34 109-142 5-39 (215)
283 PRK14969 DNA polymerase III su 95.2 0.025 5.4E-07 58.2 4.9 45 98-142 16-62 (527)
284 PRK07471 DNA polymerase III su 95.2 0.033 7.2E-07 54.5 5.6 48 95-142 16-65 (365)
285 TIGR00764 lon_rel lon-related 95.2 0.026 5.7E-07 59.0 5.1 45 96-142 16-61 (608)
286 TIGR02030 BchI-ChlI magnesium 95.2 0.033 7.2E-07 53.8 5.4 46 97-142 3-49 (337)
287 PRK07994 DNA polymerase III su 95.2 0.026 5.6E-07 59.0 5.0 46 97-142 15-62 (647)
288 PF08423 Rad51: Rad51; InterP 95.2 0.045 9.7E-07 50.9 6.1 84 117-201 37-142 (256)
289 PRK12724 flagellar biosynthesi 95.2 0.067 1.4E-06 52.9 7.5 25 118-142 223-247 (432)
290 TIGR02173 cyt_kin_arch cytidyl 95.2 0.019 4.2E-07 49.5 3.4 23 120-142 2-24 (171)
291 KOG0741 AAA+-type ATPase [Post 95.1 0.056 1.2E-06 54.0 6.9 95 116-231 536-635 (744)
292 PRK14952 DNA polymerase III su 95.1 0.027 5.9E-07 58.4 5.0 46 97-142 12-59 (584)
293 TIGR03346 chaperone_ClpB ATP-d 95.1 0.061 1.3E-06 58.8 7.9 45 98-142 565-619 (852)
294 TIGR00416 sms DNA repair prote 95.1 0.055 1.2E-06 54.6 7.0 93 105-203 79-181 (454)
295 COG2019 AdkA Archaeal adenylat 95.1 0.023 4.9E-07 48.4 3.5 25 118-142 4-28 (189)
296 PF00625 Guanylate_kin: Guanyl 95.1 0.023 5.1E-07 49.8 3.8 30 118-150 2-31 (183)
297 COG1066 Sms Predicted ATP-depe 95.1 0.051 1.1E-06 52.8 6.3 92 105-203 78-179 (456)
298 TIGR01420 pilT_fam pilus retra 95.1 0.03 6.6E-07 54.4 5.0 88 117-209 121-212 (343)
299 COG0529 CysC Adenylylsulfate k 95.1 0.04 8.6E-07 47.4 4.9 30 113-142 18-47 (197)
300 KOG0727 26S proteasome regulat 95.1 0.05 1.1E-06 49.4 5.8 47 100-149 157-217 (408)
301 PF13521 AAA_28: AAA domain; P 95.1 0.018 3.9E-07 49.5 3.0 38 121-167 2-39 (163)
302 PRK13407 bchI magnesium chelat 95.0 0.03 6.6E-07 54.0 4.7 48 95-142 5-53 (334)
303 PRK14723 flhF flagellar biosyn 95.0 0.071 1.5E-06 56.6 7.8 25 118-142 185-209 (767)
304 PRK14532 adenylate kinase; Pro 95.0 0.019 4.2E-07 50.5 3.2 22 121-142 3-24 (188)
305 PRK07940 DNA polymerase III su 95.0 0.04 8.6E-07 54.5 5.6 45 98-142 5-60 (394)
306 PF08477 Miro: Miro-like prote 95.0 0.023 4.9E-07 45.7 3.3 22 121-142 2-23 (119)
307 COG0464 SpoVK ATPases of the A 95.0 0.069 1.5E-06 54.7 7.5 74 116-204 274-347 (494)
308 TIGR00176 mobB molybdopterin-g 95.0 0.021 4.5E-07 48.8 3.1 23 120-142 1-23 (155)
309 PRK14737 gmk guanylate kinase; 95.0 0.023 4.9E-07 50.2 3.5 26 117-142 3-28 (186)
310 cd00820 PEPCK_HprK Phosphoenol 95.0 0.023 4.9E-07 45.1 3.0 22 118-139 15-36 (107)
311 CHL00081 chlI Mg-protoporyphyr 95.0 0.028 6E-07 54.5 4.2 47 96-142 15-62 (350)
312 cd02029 PRK_like Phosphoribulo 95.0 0.05 1.1E-06 50.4 5.7 72 120-193 1-85 (277)
313 PRK14531 adenylate kinase; Pro 95.0 0.024 5.3E-07 49.8 3.6 24 119-142 3-26 (183)
314 PRK14526 adenylate kinase; Pro 95.0 0.072 1.6E-06 48.0 6.6 22 121-142 3-24 (211)
315 KOG0735 AAA+-type ATPase [Post 94.9 0.035 7.6E-07 57.3 5.0 71 118-203 431-505 (952)
316 PRK05973 replicative DNA helic 94.9 0.068 1.5E-06 48.9 6.4 26 117-142 63-88 (237)
317 COG1124 DppF ABC-type dipeptid 94.9 0.022 4.7E-07 51.5 3.1 26 117-142 32-57 (252)
318 PF03193 DUF258: Protein of un 94.9 0.042 9.1E-07 47.0 4.7 35 105-142 25-59 (161)
319 TIGR02236 recomb_radA DNA repa 94.9 0.09 2E-06 50.3 7.6 26 117-142 94-119 (310)
320 PF13245 AAA_19: Part of AAA d 94.9 0.041 8.9E-07 40.8 4.1 26 117-142 9-34 (76)
321 TIGR00041 DTMP_kinase thymidyl 94.9 0.027 5.8E-07 49.8 3.7 24 119-142 4-27 (195)
322 PRK05922 type III secretion sy 94.9 0.038 8.2E-07 55.0 4.9 27 116-142 155-181 (434)
323 PRK09519 recA DNA recombinatio 94.9 0.055 1.2E-06 57.6 6.4 83 117-202 59-148 (790)
324 TIGR03498 FliI_clade3 flagella 94.9 0.031 6.7E-07 55.5 4.3 26 117-142 139-164 (418)
325 PF14532 Sigma54_activ_2: Sigm 94.9 0.028 6.2E-07 46.8 3.5 42 101-142 1-45 (138)
326 COG3640 CooC CO dehydrogenase 94.9 0.026 5.7E-07 50.7 3.4 23 120-142 2-24 (255)
327 PHA02244 ATPase-like protein 94.8 0.071 1.5E-06 51.8 6.6 34 107-142 110-143 (383)
328 COG1223 Predicted ATPase (AAA+ 94.8 0.26 5.6E-06 45.2 9.6 45 98-142 121-175 (368)
329 CHL00095 clpC Clp protease ATP 94.8 0.058 1.3E-06 58.8 6.7 46 97-142 508-563 (821)
330 PRK15453 phosphoribulokinase; 94.8 0.028 6.1E-07 52.4 3.7 27 116-142 3-29 (290)
331 PTZ00494 tuzin-like protein; P 94.8 0.2 4.3E-06 49.5 9.5 97 96-198 369-477 (664)
332 PRK09280 F0F1 ATP synthase sub 94.8 0.081 1.8E-06 53.0 7.1 92 117-210 143-257 (463)
333 TIGR00390 hslU ATP-dependent p 94.8 0.046 9.9E-07 53.9 5.2 45 98-142 12-71 (441)
334 TIGR02880 cbbX_cfxQ probable R 94.8 0.047 1E-06 51.6 5.3 23 120-142 60-82 (284)
335 PRK08154 anaerobic benzoate ca 94.8 0.05 1.1E-06 52.1 5.5 27 116-142 131-157 (309)
336 PRK06305 DNA polymerase III su 94.8 0.046 9.9E-07 55.2 5.4 46 97-142 16-63 (451)
337 PRK01184 hypothetical protein; 94.8 0.026 5.7E-07 49.5 3.3 23 119-142 2-24 (184)
338 PRK06620 hypothetical protein; 94.8 0.024 5.3E-07 51.2 3.1 24 119-142 45-68 (214)
339 TIGR01650 PD_CobS cobaltochela 94.8 0.095 2.1E-06 50.1 7.2 51 90-142 38-88 (327)
340 PRK14738 gmk guanylate kinase; 94.8 0.029 6.2E-07 50.4 3.6 26 116-141 11-36 (206)
341 PF13481 AAA_25: AAA domain; P 94.8 0.063 1.4E-06 47.3 5.7 24 119-142 33-56 (193)
342 TIGR01287 nifH nitrogenase iro 94.8 0.024 5.1E-07 53.3 3.2 24 119-142 1-24 (275)
343 PRK08927 fliI flagellum-specif 94.8 0.036 7.9E-07 55.1 4.5 27 116-142 156-182 (442)
344 PRK09825 idnK D-gluconate kina 94.8 0.028 6.2E-07 49.0 3.4 24 119-142 4-27 (176)
345 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.029 6.4E-07 42.8 3.1 23 120-142 1-23 (99)
346 PLN02165 adenylate isopentenyl 94.7 0.024 5.2E-07 54.2 3.1 29 114-142 39-67 (334)
347 PRK05439 pantothenate kinase; 94.7 0.031 6.7E-07 53.2 3.8 27 116-142 84-110 (311)
348 PRK06761 hypothetical protein; 94.7 0.027 6E-07 52.8 3.4 24 119-142 4-27 (282)
349 PRK08149 ATP synthase SpaL; Va 94.7 0.046 1E-06 54.3 5.1 26 117-142 150-175 (428)
350 TIGR03305 alt_F1F0_F1_bet alte 94.7 0.038 8.3E-07 55.1 4.5 92 117-210 137-251 (449)
351 PRK08533 flagellar accessory p 94.7 0.092 2E-06 48.0 6.7 26 117-142 23-48 (230)
352 PRK13230 nitrogenase reductase 94.7 0.027 5.8E-07 53.1 3.3 24 119-142 2-25 (279)
353 PHA02530 pseT polynucleotide k 94.7 0.029 6.2E-07 53.4 3.5 24 119-142 3-26 (300)
354 COG1763 MobB Molybdopterin-gua 94.7 0.034 7.3E-07 47.6 3.5 25 118-142 2-26 (161)
355 PRK02496 adk adenylate kinase; 94.7 0.033 7.2E-07 48.9 3.6 24 119-142 2-25 (184)
356 cd01135 V_A-ATPase_B V/A-type 94.6 0.072 1.6E-06 49.6 5.9 88 117-204 68-178 (276)
357 COG0467 RAD55 RecA-superfamily 94.6 0.035 7.7E-07 51.7 4.0 37 116-155 21-57 (260)
358 PRK00698 tmk thymidylate kinas 94.6 0.034 7.3E-07 49.5 3.7 24 119-142 4-27 (205)
359 PRK06002 fliI flagellum-specif 94.6 0.058 1.3E-06 53.8 5.6 26 117-142 164-189 (450)
360 PRK13236 nitrogenase reductase 94.6 0.032 6.9E-07 53.1 3.5 28 115-142 3-30 (296)
361 cd02117 NifH_like This family 94.6 0.031 6.6E-07 50.4 3.3 24 119-142 1-24 (212)
362 PRK14493 putative bifunctional 94.6 0.034 7.3E-07 52.2 3.6 24 119-142 2-25 (274)
363 COG1373 Predicted ATPase (AAA+ 94.6 0.1 2.2E-06 51.8 7.1 85 105-210 25-112 (398)
364 PRK14529 adenylate kinase; Pro 94.6 0.1 2.2E-06 47.3 6.6 23 120-142 2-24 (223)
365 TIGR02655 circ_KaiC circadian 94.6 0.089 1.9E-06 53.7 6.9 38 105-142 248-287 (484)
366 PLN02348 phosphoribulokinase 94.6 0.049 1.1E-06 53.2 4.8 27 116-142 47-73 (395)
367 PRK08099 bifunctional DNA-bind 94.5 0.032 6.9E-07 55.3 3.5 27 116-142 217-243 (399)
368 PRK05201 hslU ATP-dependent pr 94.5 0.073 1.6E-06 52.5 5.9 45 98-142 15-74 (443)
369 cd02022 DPCK Dephospho-coenzym 94.5 0.029 6.2E-07 49.1 2.9 21 120-140 1-21 (179)
370 TIGR01039 atpD ATP synthase, F 94.5 0.061 1.3E-06 53.7 5.5 92 117-210 142-256 (461)
371 PRK13232 nifH nitrogenase redu 94.5 0.03 6.4E-07 52.6 3.1 24 119-142 2-25 (273)
372 PF03029 ATP_bind_1: Conserved 94.5 0.026 5.7E-07 51.8 2.7 20 123-142 1-20 (238)
373 KOG3347 Predicted nucleotide k 94.5 0.03 6.6E-07 46.7 2.7 25 118-142 7-31 (176)
374 cd02040 NifH NifH gene encodes 94.5 0.031 6.7E-07 52.2 3.2 24 119-142 2-25 (270)
375 PF03308 ArgK: ArgK protein; 94.5 0.076 1.6E-06 48.8 5.5 38 105-142 14-53 (266)
376 PRK08356 hypothetical protein; 94.5 0.033 7.1E-07 49.5 3.2 22 118-139 5-26 (195)
377 PRK06995 flhF flagellar biosyn 94.5 0.11 2.3E-06 52.6 7.1 25 118-142 256-280 (484)
378 PRK13695 putative NTPase; Prov 94.5 0.036 7.8E-07 48.2 3.4 23 120-142 2-24 (174)
379 cd03116 MobB Molybdenum is an 94.5 0.042 9.1E-07 47.1 3.7 24 119-142 2-25 (159)
380 COG0194 Gmk Guanylate kinase [ 94.4 0.039 8.5E-07 47.9 3.4 25 118-142 4-28 (191)
381 PRK10416 signal recognition pa 94.4 0.042 9.1E-07 52.7 4.0 26 117-142 113-138 (318)
382 PRK10787 DNA-binding ATP-depen 94.4 0.065 1.4E-06 57.7 5.8 45 98-142 322-373 (784)
383 PF00005 ABC_tran: ABC transpo 94.4 0.031 6.7E-07 46.3 2.7 25 118-142 11-35 (137)
384 TIGR02238 recomb_DMC1 meiotic 94.4 0.19 4.2E-06 48.1 8.4 25 117-141 95-119 (313)
385 cd00984 DnaB_C DnaB helicase C 94.3 0.11 2.5E-06 47.5 6.6 46 118-165 13-64 (242)
386 cd04139 RalA_RalB RalA/RalB su 94.3 0.034 7.3E-07 47.2 2.9 23 120-142 2-24 (164)
387 KOG0652 26S proteasome regulat 94.3 0.14 3E-06 46.8 6.7 44 99-142 172-229 (424)
388 TIGR00017 cmk cytidylate kinas 94.3 0.042 9.2E-07 49.7 3.6 24 119-142 3-26 (217)
389 COG1100 GTPase SAR1 and relate 94.3 0.03 6.4E-07 50.4 2.6 24 119-142 6-29 (219)
390 TIGR02640 gas_vesic_GvpN gas v 94.3 0.063 1.4E-06 50.1 4.9 35 106-142 11-45 (262)
391 TIGR00455 apsK adenylylsulfate 94.3 0.051 1.1E-06 47.7 4.0 27 116-142 16-42 (184)
392 PRK07764 DNA polymerase III su 94.3 0.048 1E-06 58.8 4.6 45 98-142 15-61 (824)
393 cd01120 RecA-like_NTPases RecA 94.3 0.036 7.8E-07 46.9 3.0 23 120-142 1-23 (165)
394 PRK14730 coaE dephospho-CoA ki 94.3 0.073 1.6E-06 47.3 5.0 24 119-142 2-25 (195)
395 PF02374 ArsA_ATPase: Anion-tr 94.3 0.037 8E-07 52.8 3.3 24 119-142 2-25 (305)
396 PLN03186 DNA repair protein RA 94.3 0.17 3.7E-06 49.0 7.8 52 117-169 122-184 (342)
397 PF10443 RNA12: RNA12 protein; 94.3 0.11 2.4E-06 51.1 6.5 40 103-142 1-42 (431)
398 PRK08472 fliI flagellum-specif 94.2 0.088 1.9E-06 52.4 5.9 27 116-142 155-181 (434)
399 KOG0731 AAA+-type ATPase conta 94.2 0.055 1.2E-06 56.9 4.6 45 98-142 311-368 (774)
400 PRK13768 GTPase; Provisional 94.2 0.046 9.9E-07 50.8 3.7 24 119-142 3-26 (253)
401 PRK12338 hypothetical protein; 94.2 0.046 9.9E-07 52.1 3.7 25 118-142 4-28 (319)
402 PLN02796 D-glycerate 3-kinase 94.2 0.047 1E-06 52.5 3.8 26 117-142 99-124 (347)
403 cd01878 HflX HflX subfamily. 94.2 0.14 3.1E-06 45.5 6.8 27 116-142 39-65 (204)
404 PLN02318 phosphoribulokinase/u 94.2 0.058 1.3E-06 55.4 4.6 27 116-142 63-89 (656)
405 cd00544 CobU Adenosylcobinamid 94.2 0.082 1.8E-06 45.8 4.9 21 121-141 2-22 (169)
406 PF10662 PduV-EutP: Ethanolami 94.2 0.042 9.1E-07 45.9 2.9 24 119-142 2-25 (143)
407 PRK06936 type III secretion sy 94.1 0.058 1.3E-06 53.7 4.4 27 116-142 160-186 (439)
408 PRK14948 DNA polymerase III su 94.1 0.075 1.6E-06 55.7 5.4 45 98-142 16-62 (620)
409 PF13604 AAA_30: AAA domain; P 94.1 0.097 2.1E-06 46.5 5.4 35 108-142 8-42 (196)
410 KOG0651 26S proteasome regulat 94.1 0.071 1.5E-06 49.9 4.6 26 117-142 165-190 (388)
411 PRK14953 DNA polymerase III su 94.1 0.073 1.6E-06 54.2 5.2 45 98-142 16-62 (486)
412 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.089 1.9E-06 50.5 5.4 45 98-142 61-112 (358)
413 PF01926 MMR_HSR1: 50S ribosom 94.1 0.044 9.6E-07 44.0 2.9 21 121-141 2-22 (116)
414 TIGR02239 recomb_RAD51 DNA rep 94.1 0.15 3.2E-06 49.0 6.9 26 116-141 94-119 (316)
415 cd01673 dNK Deoxyribonucleosid 94.1 0.042 9.2E-07 48.5 3.0 23 120-142 1-23 (193)
416 PRK13235 nifH nitrogenase redu 94.1 0.043 9.4E-07 51.5 3.3 24 119-142 2-25 (274)
417 cd03225 ABC_cobalt_CbiO_domain 94.1 0.044 9.6E-07 49.2 3.2 26 117-142 26-51 (211)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.044 9.5E-07 49.5 3.1 26 117-142 29-54 (218)
419 PRK05342 clpX ATP-dependent pr 94.0 0.08 1.7E-06 52.7 5.1 45 98-142 71-132 (412)
420 PF03215 Rad17: Rad17 cell cyc 94.0 0.061 1.3E-06 55.0 4.4 45 98-142 19-69 (519)
421 PRK06647 DNA polymerase III su 94.0 0.07 1.5E-06 55.3 4.9 46 97-142 15-62 (563)
422 cd03114 ArgK-like The function 94.0 0.048 1E-06 46.2 3.1 23 120-142 1-23 (148)
423 PRK13233 nifH nitrogenase redu 94.0 0.046 1E-06 51.3 3.3 24 119-142 3-26 (275)
424 cd04119 RJL RJL (RabJ-Like) su 94.0 0.044 9.5E-07 46.7 2.9 23 120-142 2-24 (168)
425 TIGR01166 cbiO cobalt transpor 94.0 0.046 1E-06 48.2 3.1 26 117-142 17-42 (190)
426 COG1703 ArgK Putative periplas 94.0 0.087 1.9E-06 49.2 4.9 36 107-142 38-75 (323)
427 TIGR00960 3a0501s02 Type II (G 94.0 0.046 1E-06 49.3 3.1 26 117-142 28-53 (216)
428 smart00173 RAS Ras subfamily o 94.0 0.046 9.9E-07 46.6 3.0 23 120-142 2-24 (164)
429 cd03297 ABC_ModC_molybdenum_tr 94.0 0.051 1.1E-06 48.9 3.4 26 116-142 22-47 (214)
430 cd03229 ABC_Class3 This class 93.9 0.05 1.1E-06 47.5 3.2 26 117-142 25-50 (178)
431 cd01862 Rab7 Rab7 subfamily. 93.9 0.042 9E-07 47.1 2.7 23 120-142 2-24 (172)
432 PRK09435 membrane ATPase/prote 93.9 0.091 2E-06 50.6 5.2 36 107-142 43-80 (332)
433 smart00072 GuKc Guanylate kina 93.9 0.052 1.1E-06 47.7 3.3 25 118-142 2-26 (184)
434 cd01130 VirB11-like_ATPase Typ 93.9 0.079 1.7E-06 46.6 4.5 89 118-210 25-118 (186)
435 PRK05688 fliI flagellum-specif 93.9 0.061 1.3E-06 53.7 4.1 26 117-142 167-192 (451)
436 KOG0739 AAA+-type ATPase [Post 93.9 0.19 4.2E-06 46.8 6.9 90 98-203 133-236 (439)
437 PLN03187 meiotic recombination 93.9 0.25 5.4E-06 47.9 8.2 52 117-169 125-187 (344)
438 PF12775 AAA_7: P-loop contain 93.9 0.16 3.5E-06 47.6 6.7 37 105-142 21-57 (272)
439 cd01122 GP4d_helicase GP4d_hel 93.9 0.2 4.3E-06 46.8 7.3 47 117-165 29-81 (271)
440 COG1116 TauB ABC-type nitrate/ 93.9 0.052 1.1E-06 49.4 3.1 26 117-142 28-53 (248)
441 cd02026 PRK Phosphoribulokinas 93.8 0.046 1E-06 51.3 2.9 23 120-142 1-23 (273)
442 PRK04220 2-phosphoglycerate ki 93.8 0.096 2.1E-06 49.5 5.0 27 116-142 90-116 (301)
443 cd04163 Era Era subfamily. Er 93.8 0.056 1.2E-06 45.6 3.2 25 118-142 3-27 (168)
444 cd02034 CooC The accessory pro 93.8 0.064 1.4E-06 43.3 3.3 22 121-142 2-23 (116)
445 COG3840 ThiQ ABC-type thiamine 93.8 0.24 5.3E-06 43.0 6.9 26 117-142 24-49 (231)
446 TIGR01041 ATP_syn_B_arch ATP s 93.8 0.12 2.7E-06 51.8 6.0 93 117-210 140-257 (458)
447 COG0003 ArsA Predicted ATPase 93.8 0.055 1.2E-06 51.8 3.3 25 118-142 2-26 (322)
448 COG4987 CydC ABC-type transpor 93.8 0.18 3.9E-06 50.7 7.0 25 117-141 363-387 (573)
449 cd03222 ABC_RNaseL_inhibitor T 93.8 0.054 1.2E-06 47.3 3.0 26 117-142 24-49 (177)
450 PRK13231 nitrogenase reductase 93.8 0.051 1.1E-06 50.7 3.1 24 119-142 3-26 (264)
451 cd03261 ABC_Org_Solvent_Resist 93.7 0.053 1.2E-06 49.6 3.1 26 117-142 25-50 (235)
452 COG2842 Uncharacterized ATPase 93.7 0.3 6.5E-06 45.6 7.9 95 98-204 72-177 (297)
453 cd03269 ABC_putative_ATPase Th 93.7 0.056 1.2E-06 48.5 3.2 26 117-142 25-50 (210)
454 cd04155 Arl3 Arl3 subfamily. 93.7 0.083 1.8E-06 45.4 4.2 27 116-142 12-38 (173)
455 cd03259 ABC_Carb_Solutes_like 93.7 0.055 1.2E-06 48.7 3.2 26 117-142 25-50 (213)
456 PRK13541 cytochrome c biogenes 93.7 0.056 1.2E-06 47.9 3.2 25 118-142 26-50 (195)
457 TIGR00231 small_GTP small GTP- 93.7 0.048 1E-06 45.4 2.6 23 120-142 3-25 (161)
458 cd04138 H_N_K_Ras_like H-Ras/N 93.7 0.054 1.2E-06 45.8 2.9 23 120-142 3-25 (162)
459 smart00178 SAR Sar1p-like memb 93.7 0.088 1.9E-06 46.2 4.3 35 107-141 5-40 (184)
460 PF02367 UPF0079: Uncharacteri 93.7 0.14 3E-06 41.7 5.1 27 116-142 13-39 (123)
461 TIGR02673 FtsE cell division A 93.7 0.057 1.2E-06 48.6 3.1 26 117-142 27-52 (214)
462 cd03263 ABC_subfamily_A The AB 93.7 0.057 1.2E-06 48.8 3.2 26 117-142 27-52 (220)
463 TIGR02315 ABC_phnC phosphonate 93.7 0.055 1.2E-06 49.7 3.1 26 117-142 27-52 (243)
464 cd04113 Rab4 Rab4 subfamily. 93.7 0.054 1.2E-06 46.0 2.9 22 121-142 3-24 (161)
465 cd03256 ABC_PhnC_transporter A 93.7 0.056 1.2E-06 49.6 3.1 26 117-142 26-51 (241)
466 cd03264 ABC_drug_resistance_li 93.6 0.053 1.1E-06 48.7 2.9 23 120-142 27-49 (211)
467 PRK00023 cmk cytidylate kinase 93.6 0.07 1.5E-06 48.6 3.7 24 119-142 5-28 (225)
468 PRK05563 DNA polymerase III su 93.6 0.1 2.2E-06 54.1 5.3 46 97-142 15-62 (559)
469 cd03293 ABC_NrtD_SsuB_transpor 93.6 0.058 1.3E-06 48.8 3.1 25 118-142 30-54 (220)
470 PRK05537 bifunctional sulfate 93.6 0.12 2.6E-06 53.7 5.8 43 100-142 371-416 (568)
471 TIGR00750 lao LAO/AO transport 93.6 0.097 2.1E-06 49.9 4.8 27 116-142 32-58 (300)
472 TIGR03496 FliI_clade1 flagella 93.6 0.096 2.1E-06 52.0 4.9 26 117-142 136-161 (411)
473 CHL00060 atpB ATP synthase CF1 93.6 0.12 2.5E-06 52.2 5.4 92 117-210 160-281 (494)
474 TIGR02016 BchX chlorophyllide 93.6 0.06 1.3E-06 51.2 3.3 24 119-142 1-24 (296)
475 TIGR01281 DPOR_bchL light-inde 93.6 0.059 1.3E-06 50.4 3.3 23 120-142 2-24 (268)
476 PRK07133 DNA polymerase III su 93.6 0.083 1.8E-06 55.8 4.6 45 98-142 18-64 (725)
477 cd02032 Bchl_like This family 93.6 0.06 1.3E-06 50.3 3.3 23 120-142 2-24 (267)
478 PLN02459 probable adenylate ki 93.6 0.22 4.8E-06 46.1 6.9 24 119-142 30-53 (261)
479 COG1120 FepC ABC-type cobalami 93.6 0.057 1.2E-06 49.8 3.0 26 117-142 27-52 (258)
480 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.14 3.1E-06 47.7 5.6 26 117-142 68-94 (274)
481 cd03260 ABC_PstB_phosphate_tra 93.6 0.061 1.3E-06 48.9 3.2 26 117-142 25-50 (227)
482 cd03292 ABC_FtsE_transporter F 93.6 0.061 1.3E-06 48.3 3.2 26 117-142 26-51 (214)
483 smart00175 RAB Rab subfamily o 93.5 0.055 1.2E-06 45.9 2.7 23 120-142 2-24 (164)
484 cd03235 ABC_Metallic_Cations A 93.5 0.056 1.2E-06 48.6 2.9 26 117-142 24-49 (213)
485 cd03238 ABC_UvrA The excision 93.5 0.063 1.4E-06 46.8 3.0 24 117-140 20-43 (176)
486 PRK11608 pspF phage shock prot 93.5 0.1 2.3E-06 50.3 4.8 45 98-142 6-53 (326)
487 PRK10584 putative ABC transpor 93.5 0.064 1.4E-06 48.8 3.2 26 117-142 35-60 (228)
488 cd04153 Arl5_Arl8 Arl5/Arl8 su 93.5 0.1 2.3E-06 45.1 4.4 35 108-142 5-39 (174)
489 PRK07933 thymidylate kinase; V 93.5 0.074 1.6E-06 48.0 3.5 24 119-142 1-24 (213)
490 cd03265 ABC_DrrA DrrA is the A 93.5 0.065 1.4E-06 48.5 3.2 26 117-142 25-50 (220)
491 cd03226 ABC_cobalt_CbiO_domain 93.5 0.064 1.4E-06 47.9 3.1 26 117-142 25-50 (205)
492 cd01136 ATPase_flagellum-secre 93.5 0.14 2.9E-06 49.2 5.5 26 117-142 68-93 (326)
493 PF00071 Ras: Ras family; Int 93.5 0.07 1.5E-06 45.3 3.2 22 121-142 2-23 (162)
494 TIGR03864 PQQ_ABC_ATP ABC tran 93.5 0.064 1.4E-06 49.1 3.2 26 117-142 26-51 (236)
495 cd04124 RabL2 RabL2 subfamily. 93.5 0.063 1.4E-06 45.8 2.9 22 121-142 3-24 (161)
496 cd04136 Rap_like Rap-like subf 93.5 0.062 1.4E-06 45.6 2.9 23 120-142 3-25 (163)
497 cd03296 ABC_CysA_sulfate_impor 93.5 0.064 1.4E-06 49.2 3.1 26 117-142 27-52 (239)
498 COG0465 HflB ATP-dependent Zn 93.4 0.17 3.6E-06 52.2 6.3 45 98-142 150-207 (596)
499 cd00154 Rab Rab family. Rab G 93.4 0.064 1.4E-06 44.9 2.9 22 121-142 3-24 (159)
500 PRK14965 DNA polymerase III su 93.4 0.11 2.4E-06 54.2 5.2 46 97-142 15-62 (576)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-61 Score=505.08 Aligned_cols=404 Identities=31% Similarity=0.488 Sum_probs=326.6
Q ss_pred hHHHHHHHhhhcccccchhhhhhhcccccccccccc-cc---ccccccchhhhh----hhhhHHHHHHHHHHHHHHHHHH
Q 043070 4 SKSCMMKSIKGSGIQYKIVTCLDRQCHTDWKRYHNR-LT---KTEKWIPFCRVK----RKQSNVRLDVVKMAEDLQSLVD 75 (414)
Q Consensus 4 ~~~~W~~~vr~~dlayd~eD~iD~~~~~~~~~~~~~-~~---~~~~~~~~~~~~----~~~~~~~~~i~~~i~~l~~~~~ 75 (414)
-++.|.+.++ |++|++||.++.|........... .. .....++.+... .......+++.+.+++++....
T Consensus 56 ~~~~~~e~~~--~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~ 133 (889)
T KOG4658|consen 56 RRVNWEEDVG--DLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGS 133 (889)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcc
Confidence 4679999999 999999999999865332221110 00 011111111111 2223345666666666666655
Q ss_pred hcCCCccccC-CCCCCCcccc---cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc
Q 043070 76 EGKGLKKAAD-PLPQPVVEVQ---DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG 150 (414)
Q Consensus 76 ~~~~~~~~~~-~~~~~~~~~~---~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~ 150 (414)
+.. |..+.. ..+......+ +... ||.+ .++++.+.|.+++..+++|+||||+||||||+.++|+...++.+|+
T Consensus 134 ~~~-~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 134 KGV-FEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ccc-eecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 444 544443 1222222222 2233 9999 9999999998877799999999999999999999999944999999
Q ss_pred chHhH--------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCccchhhhccC---CCCCCc
Q 043070 151 LVILV--------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREPIDLKTAGAS---IQNGSK 219 (414)
Q Consensus 151 ~~~wv--------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~p---~~~gs~ 219 (414)
.++|| ..++.+|+..++.........+.++++..|.+.|++|||||||||||+..+|+.++.| ..+||+
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~K 291 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSK 291 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeE
Confidence 99999 9999999999998665555555689999999999999999999999999999999544 668899
Q ss_pred Hh---------------------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCC
Q 043070 220 VK---------------------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRN 272 (414)
Q Consensus 220 ii---------------------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~ 272 (414)
|+ +||.||++.+|.......+.++++|++++++|+|+|||+.++|+.|+.+.+
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 98 999999999998866666779999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccC-CCCCCCCccchhhHHHhchhCCCCCChhHHHhHhhhh---hcCCHHHHHHHHHHcCCccCCCchH
Q 043070 273 PAVWENAVNDLINY-PAEFPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNFL---IFIRKDDLVDLWTGEGLLRDYHNIA 348 (414)
Q Consensus 273 ~~~w~~~~~~l~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsiF---~~i~~~~Li~~W~aeg~i~~~~~~~ 348 (414)
..+|+++.+.+.+. ..+.++..+.+++++.+||+.||++ +|.||+|||+| |.|+++.|+.+|+||||+.+...+.
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~ 450 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGE 450 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCcccccc
Confidence 99999999999887 4455566778999999999999987 99999999999 9999999999999999999965788
Q ss_pred HHHHHHHHHHHHHHHcCccccccc-ccCCeEEECHHHHHHHHHHHcccCc--CcEEEecCcchhhhcc
Q 043070 349 AARVQGKSIIEGLVLVCLLEEVEA-YFGNFVKMHDMIRDLALWIASEDQE--NKILAAKSKDELIEEQ 413 (414)
Q Consensus 349 ~~~~~~~~~l~~L~~~sLl~~~~~-~~~~~~~mH~lv~~~a~~~~~~e~~--~~f~~~~~~~~l~~~~ 413 (414)
.+++.|+.|+.+|+++||++.... +...+|+|||+||++|.++|++.+. +++++.++. ++.+.|
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~-~~~~~~ 517 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGV-GLSEIP 517 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCc-Cccccc
Confidence 999999999999999999998763 2368999999999999999995444 558888887 777655
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.3e-42 Score=326.05 Aligned_cols=240 Identities=26% Similarity=0.440 Sum_probs=197.7
Q ss_pred hH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHHHHHhcCCCC
Q 043070 103 VS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVMGYRLAMSNE 171 (414)
Q Consensus 103 r~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i~~~l~~~~~ 171 (414)
|| ++++|.+.|.+ ++.++|+|+||||+||||||..++++. .++.+|+.++|+ ..++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78 99999999977 789999999999999999999999996 468999999999 8889999999988754
Q ss_pred cc-CcCCHhHHHHHHHHHhCCCcEEEEEecCCCccchhhhc--cC-CCCCCcHh--------------------------
Q 043070 172 VW-DDKTKQGRAIDSSRRLGQRRFALLLDDLREPIDLKTAG--AS-IQNGSKVK-------------------------- 221 (414)
Q Consensus 172 ~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--~p-~~~gs~ii-------------------------- 221 (414)
.. ...+.++....+++.|.++++||||||||+...|+.+. +| ...|++||
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 56778889999999999999999999999999998773 33 45678887
Q ss_pred -hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHhccCCCCCCCCccchhhH
Q 043070 222 -YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVNDLINYPAEFPGMGDRIFPR 300 (414)
Q Consensus 222 -~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 300 (414)
+|++||.+.++......++.+.+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++++........+...++..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999765422344557789999999999999999999999765678999999998877754444455689999
Q ss_pred HHhchhCCCCCChhHHHhHhhhh---hcCCHHHHHHHHHHcCCccCC
Q 043070 301 LKFSYDHLPVKPTKLIFYFMNFL---IFIRKDDLVDLWTGEGLLRDY 344 (414)
Q Consensus 301 l~~sy~~L~~~~~k~cfl~lsiF---~~i~~~~Li~~W~aeg~i~~~ 344 (414)
+.+||+.||++ +|.||+|||+| +.|+++.|+++|++|||++..
T Consensus 240 l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999998 99999999999 789999999999999999875
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-37 Score=339.22 Aligned_cols=269 Identities=23% Similarity=0.309 Sum_probs=212.2
Q ss_pred cCCCccchH-HHHHHHHHh--hcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHH----------------
Q 043070 96 DMENTVDVS-RLNEVWRLV--EDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVK---------------- 156 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~---------------- 156 (414)
..+.+||++ .++++..+| ..++.++|+||||||+||||||+++|+.. ...|++.+|+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 456799999 999999988 34678999999999999999999999988 67888876651
Q ss_pred -------HHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCccchhhhccC---CCCCCcHh-----
Q 043070 157 -------RIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREPIDLKTAGAS---IQNGSKVK----- 221 (414)
Q Consensus 157 -------~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~p---~~~gs~ii----- 221 (414)
.++..++..+-.... ..... ...+++.|++||+||||||||+..+|+.+... .++||+||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~----~~~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD----IKIYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC----cccCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 122333333321110 01111 24577889999999999999999999988433 46899888
Q ss_pred ---------------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHH
Q 043070 222 ---------------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAV 280 (414)
Q Consensus 222 ---------------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~ 280 (414)
+||+||++.||... ..++++.+++++|+++|+|+||||+++|++|+. ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 89999999999764 334578899999999999999999999999998 6889999999
Q ss_pred HHhccCCCCCCCCccchhhHHHhchhCCCCCChhHHHhHhhhh-hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHH
Q 043070 281 NDLINYPAEFPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNFL-IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIE 359 (414)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsiF-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~ 359 (414)
++|...+ ...+..+|++||+.|+++..|.||+++|+| ..... ..+..|.+.+..... ..++
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~-~~v~~~l~~~~~~~~-----------~~l~ 473 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV-NDIKLLLANSDLDVN-----------IGLK 473 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH-HHHHHHHHhcCCCch-----------hChH
Confidence 9987643 247999999999999864389999999999 44444 446678777654432 1389
Q ss_pred HHHHcCcccccccccCCeEEECHHHHHHHHHHHcccC
Q 043070 360 GLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIASEDQ 396 (414)
Q Consensus 360 ~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~e~ 396 (414)
.|+++|||+.. ...++||||+|+++++++.++.
T Consensus 474 ~L~~ksLi~~~----~~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 474 NLVDKSLIHVR----EDIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred HHHhcCCEEEc----CCeEEhhhHHHHHHHHHHHhhc
Confidence 99999999875 3579999999999999997753
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=6.7e-11 Score=129.62 Aligned_cols=264 Identities=13% Similarity=0.091 Sum_probs=156.4
Q ss_pred cccccCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHH
Q 043070 92 VEVQDMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHV 161 (414)
Q Consensus 92 ~~~~~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~ 161 (414)
.+|+.+..+|-|+ -.+.+-+ ....+++.|+|++|.||||++..+.+.. . .++|+ ..+...
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHH
Confidence 3444556677777 4444322 2457899999999999999999988543 1 46787 445555
Q ss_pred HHHHhcCCCCc-----------cCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCccc--hh-hh--ccC-CCCCCcHh-
Q 043070 162 MGYRLAMSNEV-----------WDDKTKQGRAIDSSRRLG--QRRFALLLDDLREPID--LK-TA--GAS-IQNGSKVK- 221 (414)
Q Consensus 162 i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~--~~-~~--~~p-~~~gs~ii- 221 (414)
++..++...+. ....+...+...+...|. +.+++|||||+...++ .. .+ .++ ...+..+|
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 55555321110 011223334444444443 6799999999976531 11 11 111 11111111
Q ss_pred --------------------------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcC
Q 043070 222 --------------------------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTS 269 (414)
Q Consensus 222 --------------------------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~ 269 (414)
++.++|....+.. .+ .+.+..|.+.|+|.|+++..++..+..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---IE---AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---CC---HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 5666665544332 11 345678999999999999999877755
Q ss_pred CCChhHHHHHHHHhccCCCCCCCCccchhhHHHh-chhCCCCCChhHHHhHhhhhhcCCHHHHHHHHHHcCCccCCCchH
Q 043070 270 IRNPAVWENAVNDLINYPAEFPGMGDRIFPRLKF-SYDHLPVKPTKLIFYFMNFLIFIRKDDLVDLWTGEGLLRDYHNIA 348 (414)
Q Consensus 270 ~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~cfl~lsiF~~i~~~~Li~~W~aeg~i~~~~~~~ 348 (414)
.... .......+.. .....+...+.- .++.||++ .+..+..+|++..|+.+.+-.+ ...
T Consensus 232 ~~~~--~~~~~~~~~~------~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~~~l~~~l------~~~----- 291 (903)
T PRK04841 232 NNSS--LHDSARRLAG------INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMNDALIVRV------TGE----- 291 (903)
T ss_pred CCCc--hhhhhHhhcC------CCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCCHHHHHHH------cCC-----
Confidence 2210 0111111100 001235554443 37899998 9999999999966665544321 111
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccCCeEEECHHHHHHHHHHHcc
Q 043070 349 AARVQGKSIIEGLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIASE 394 (414)
Q Consensus 349 ~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~ 394 (414)
+.+...+++|.+.+++....++....|+.|++++++++.....
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 2346779999999997543222245899999999999977643
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.12 E-value=1.3e-08 Score=100.90 Aligned_cols=107 Identities=14% Similarity=0.049 Sum_probs=76.7
Q ss_pred CCCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHHH
Q 043070 97 MENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVMG 163 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i~ 163 (414)
++.++||+ ++++|...|.+ .....+.|+|++|+|||++++.++++.. .....-..+++ ..++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 36799999 99999999833 3445678999999999999999999872 12211122233 57788888
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCc
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREP 204 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 204 (414)
.++..........+.+++...+.+.+. ++..+||||+++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 888753221233456777788888875 45689999999874
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=7.4e-08 Score=94.58 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=73.8
Q ss_pred CCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc---chHhH--------HHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG---LVILV--------KRIQHV 161 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~---~~~wv--------~~l~~~ 161 (414)
+.++||+ ++++|...|.+ .....+.|+|++|+|||++++.+++.......... ..+|+ ..++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5799999 99999999853 34567999999999999999999987621111110 11222 677888
Q ss_pred HHHHhc---CCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCc
Q 043070 162 MGYRLA---MSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREP 204 (414)
Q Consensus 162 i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 204 (414)
|+.++. ...+ ....+..+....+.+.+. +++++||||+++..
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 888883 2221 123345566666777664 56889999999877
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=3.8e-08 Score=92.36 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=87.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRR 188 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 188 (414)
.....+.|+|++|+|||||++.+++... ...+ ..+|+ .+++..|+..++.+.. ..+.......+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKLVNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 4456899999999999999999999872 1221 11232 6788888888876542 22333333344332
Q ss_pred -----hCCCcEEEEEecCCCcc--chhhhc-cC---CCCCC--cHh----------------------------------
Q 043070 189 -----LGQRRFALLLDDLREPI--DLKTAG-AS---IQNGS--KVK---------------------------------- 221 (414)
Q Consensus 189 -----L~~kr~LlVlDdv~~~~--~~~~~~-~p---~~~gs--~ii---------------------------------- 221 (414)
..+++.+||+||++... .++.+. +. ..++. .|+
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 26788999999998864 333331 11 11111 111
Q ss_pred -hHHHHHHHhhcCCcCCCC-chHHHHHHHHHHHhCCchhHHHHHHHHh
Q 043070 222 -YAWNLFQLKVTDDVLNSH-RDIRKHAETVAGLCGGLPLSLITTGSAM 267 (414)
Q Consensus 222 -~a~~Lf~~~a~~~~~~~~-~~l~~~~~~I~~~c~GlPLai~~~g~~L 267 (414)
+..+++...+........ .-..+..+.|.+.|+|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 344444433321110001 1124677889999999999999888776
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.97 E-value=2.6e-08 Score=102.63 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=165.6
Q ss_pred CCCCcccccCCCccchHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HH
Q 043070 88 PQPVVEVQDMENTVDVSRLNEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KR 157 (414)
Q Consensus 88 ~~~~~~~~~~~~~vGr~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~ 157 (414)
++..++|.++.+.|-|. .+.+.|.+ ...+++.|..++|.|||||+.+..... ..=..+.|. .+
T Consensus 9 ~sk~~~P~~~~~~v~R~---rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 9 PSKLVRPVRPDNYVVRP---RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred ccccCCCCCcccccccH---HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHH
Confidence 33444455555566555 44555544 478999999999999999999998733 333567788 56
Q ss_pred HHHHHHHHhcCCCCc-----------cCcCCHhHHHHHHHHHhCC--CcEEEEEecCCCcc---chhhhc--cC-CCCCC
Q 043070 158 IQHVMGYRLAMSNEV-----------WDDKTKQGRAIDSSRRLGQ--RRFALLLDDLREPI---DLKTAG--AS-IQNGS 218 (414)
Q Consensus 158 l~~~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~---~~~~~~--~p-~~~gs 218 (414)
+..-++..++.-.+. ....+...+.+.+..-|.. ++..|||||---.. --..+. +. ...+-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 666666666522221 1234455666666666654 68999999964332 111110 11 11222
Q ss_pred cHh---------------------------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHH
Q 043070 219 KVK---------------------------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGS 265 (414)
Q Consensus 219 ~ii---------------------------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~ 265 (414)
.+| |+-++|....+..- -....+.+.+...|.+-|+..++=
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHH
Confidence 221 67667666543321 134467888999999999998887
Q ss_pred HhcCCCChhHHHHHHHHhccCCCCCCCCccchhh-HHHhchhCCCCCChhHHHhHhhhhhcCCHHHHHHHHHHcCCccCC
Q 043070 266 AMTSIRNPAVWENAVNDLINYPAEFPGMGDRIFP-RLKFSYDHLPVKPTKLIFYFMNFLIFIRKDDLVDLWTGEGLLRDY 344 (414)
Q Consensus 266 ~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cfl~lsiF~~i~~~~Li~~W~aeg~i~~~ 344 (414)
.++.+.+.+.-...++ +....+.. ...--++.||++ +|..++-||++..+.-+-.-+
T Consensus 236 a~~~~~~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~eL~~~----------- 293 (894)
T COG2909 236 ALRNNTSAEQSLRGLS----------GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFNDELCNA----------- 293 (894)
T ss_pred HccCCCcHHHHhhhcc----------chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhHHHHHH-----------
Confidence 7774344333322221 00111111 122346889999 999999999994444333221
Q ss_pred CchHHHHHHHHHHHHHHHHcCcccccccccCCeEEECHHHHHHHHHHHcc
Q 043070 345 HNIAAARVQGKSIIEGLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIASE 394 (414)
Q Consensus 345 ~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~ 394 (414)
-+.++.+...+++|.+++|+-..-++....|+.|.|..+|.+.-...
T Consensus 294 ---Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 294 ---LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 12334577789999999998644444478999999999999976655
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=3.3e-08 Score=94.64 Aligned_cols=236 Identities=10% Similarity=0.005 Sum_probs=130.2
Q ss_pred CCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcch--HhH--HHHHHHHHHHhc
Q 043070 98 ENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLV--ILV--KRIQHVMGYRLA 167 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~--~wv--~~l~~~i~~~l~ 167 (414)
.+|||++ .+++|..++.. .....+.++|++|+|||+||+.+++.. ...|... ... ...+...+..++
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKPGDLAAILTNLE 80 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCchhHHHHHHhcc
Confidence 4689999 99999988852 345678899999999999999999987 2222110 011 112222333333
Q ss_pred CCCC----ccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCccchhhhccC------CCC-----------CCcHh-----
Q 043070 168 MSNE----VWDDKTKQGRAIDSSRRLGQRRFALLLDDLREPIDLKTAGAS------IQN-----------GSKVK----- 221 (414)
Q Consensus 168 ~~~~----~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~~p------~~~-----------gs~ii----- 221 (414)
...- ..+..+ ....+.+...+.+.+..+|+|+..+...+.....| .+. ...++
T Consensus 81 ~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 81 EGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred cCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCC
Confidence 2210 001111 12345577778888888889887666544321111 011 11111
Q ss_pred ---hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcC-------C-CChhHHHHHHHHhccCCCCC
Q 043070 222 ---YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTS-------I-RNPAVWENAVNDLINYPAEF 290 (414)
Q Consensus 222 ---~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~-------~-~~~~~w~~~~~~l~~~~~~~ 290 (414)
+..+++.+.+.......+ .+....|++.|+|.|-.+..++..+.. . .+.+....
T Consensus 160 ~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~------------ 224 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK------------ 224 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH------------
Confidence 677777776653322222 345678999999999655444432210 0 11111111
Q ss_pred CCCccchhhHHHhchhCCCCCChhHHHh-Hhhhh--hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHH-HHHHcCc
Q 043070 291 PGMGDRIFPRLKFSYDHLPVKPTKLIFY-FMNFL--IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIE-GLVLVCL 366 (414)
Q Consensus 291 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~lsiF--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~sL 366 (414)
....+..+|..|++. .+..|. .++.+ .++..+.+.... |- ....++..++ .|++++|
T Consensus 225 ------~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 225 ------ALEMLMIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGF 285 (305)
T ss_pred ------HHHHhCCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCC
Confidence 222245567777776 555444 44555 445554443311 11 2235666788 6999999
Q ss_pred ccccc
Q 043070 367 LEEVE 371 (414)
Q Consensus 367 l~~~~ 371 (414)
|....
T Consensus 286 i~~~~ 290 (305)
T TIGR00635 286 LQRTP 290 (305)
T ss_pred cccCC
Confidence 97554
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=1e-08 Score=93.66 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=36.9
Q ss_pred ccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 100 TVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+||+ ++++|.+++..+....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999 99999999988777899999999999999999999977
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.81 E-value=4.3e-08 Score=94.74 Aligned_cols=245 Identities=11% Similarity=0.037 Sum_probs=131.9
Q ss_pred CCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc--chHhH--HHHHHHHHHHh
Q 043070 97 MENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG--LVILV--KRIQHVMGYRL 166 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~--~~~wv--~~l~~~i~~~l 166 (414)
..+|+|++ .++.+..++.. .....+.|+|++|+|||+||+.+++.. ...+. ..-.+ ...+..++..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKPGDLAAILTNL 100 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccChHHHHHHHHhc
Confidence 36799999 99988887742 345678999999999999999999987 22221 11112 22333444444
Q ss_pred cCCCC----ccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCccchhh----h---ccCCC----------CCCcHh----
Q 043070 167 AMSNE----VWDDKTKQGRAIDSSRRLGQRRFALLLDDLREPIDLKT----A---GASIQ----------NGSKVK---- 221 (414)
Q Consensus 167 ~~~~~----~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~----~---~~p~~----------~gs~ii---- 221 (414)
+...- ..+..+ ....+.+...+.+.+..+|+|+..+...+.. + +..+. ....++
T Consensus 101 ~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 101 EEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred ccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 32210 001111 1233446667777778888887655433221 1 00000 000111
Q ss_pred ----hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHhccCCCCCCCCccch
Q 043070 222 ----YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVNDLINYPAEFPGMGDRI 297 (414)
Q Consensus 222 ----~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 297 (414)
+..+++.+.+.......+ ++....|++.|+|.|-.+..+...+. .|....+ ..... ...-...
T Consensus 180 ~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~---~~~I~-~~~v~~~ 246 (328)
T PRK00080 180 YTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG---DGVIT-KEIADKA 246 (328)
T ss_pred CCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC---CCCCC-HHHHHHH
Confidence 666777776654432332 35678899999999954444333221 1211100 00000 0000123
Q ss_pred hhHHHhchhCCCCCChhHHHh-Hhhhh--hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHH-HHHHcCcccccc
Q 043070 298 FPRLKFSYDHLPVKPTKLIFY-FMNFL--IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIE-GLVLVCLLEEVE 371 (414)
Q Consensus 298 ~~~l~~sy~~L~~~~~k~cfl-~lsiF--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~sLl~~~~ 371 (414)
...+...+..|++. .+..+. .+..| .++..+.+.... | .....+++.++ .|++.+||+...
T Consensus 247 l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 247 LDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C---------CCcchHHHHhhHHHHHcCCcccCC
Confidence 34455667778776 666554 55556 556666654322 1 12234555677 899999998654
No 12
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=7.8e-09 Score=98.82 Aligned_cols=261 Identities=18% Similarity=0.151 Sum_probs=170.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-chHhH--------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-LVILV--------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSR 187 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-~~~wv--------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 187 (414)
..+.++++|.|||||||++-.+.. . ..-|. .++++ ..+.-.+...++.+. .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999998 5 45664 44455 333444444466654 222344556777
Q ss_pred HhCCCcEEEEEecCCCccc------hhhhccCCCCCCcHh------------------------hHHHHHHHhhcCCc--
Q 043070 188 RLGQRRFALLLDDLREPID------LKTAGASIQNGSKVK------------------------YAWNLFQLKVTDDV-- 235 (414)
Q Consensus 188 ~L~~kr~LlVlDdv~~~~~------~~~~~~p~~~gs~ii------------------------~a~~Lf~~~a~~~~-- 235 (414)
...++|.++|+||..+..+ |.-+ . +...-.++ ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~-~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-G-ACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-c-cchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 8889999999999876542 1111 0 11111222 67788776663321
Q ss_pred CCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHH----hccCCCCCCCCccchhhHHHhchhCCCCC
Q 043070 236 LNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVND----LINYPAEFPGMGDRIFPRLKFSYDHLPVK 311 (414)
Q Consensus 236 ~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 311 (414)
............+|+++.+|.||+|..+++..+. ....+-...++. +........--+....+.+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1122233567789999999999999999999888 544444333321 22221111112347889999999999998
Q ss_pred ChhHHHhHhhhh-hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHHHHHHcCcccccccccCCeEEECHHHHHHHHH
Q 043070 312 PTKLIFYFMNFL-IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVEAYFGNFVKMHDMIRDLALW 390 (414)
Q Consensus 312 ~~k~cfl~lsiF-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~ 390 (414)
.+--|.-++.| ..|..+ ...|.+-|-.... +.......+..|+++|++...+......|+.-+-++.|+..
T Consensus 241 -e~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 241 -ERALFGRLAVFVGGFDLG--LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred -HHHHhcchhhhhhhhccc--HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999 666665 3345554433211 22344455788999999877664445678888889999988
Q ss_pred HHcccCc
Q 043070 391 IASEDQE 397 (414)
Q Consensus 391 ~~~~e~~ 397 (414)
+..+.++
T Consensus 313 eL~r~~e 319 (414)
T COG3903 313 ELHRSGE 319 (414)
T ss_pred HHHhhhH
Confidence 8777544
No 13
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.50 E-value=1.8e-05 Score=82.97 Aligned_cols=266 Identities=14% Similarity=0.061 Sum_probs=135.7
Q ss_pred CCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcC--CCCcc--hHhH--------HHH
Q 043070 97 MENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTR--HNFGL--VILV--------KRI 158 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~--~~F~~--~~wv--------~~l 158 (414)
++.+.||| ++++|...|.. ....++-|+|++|.|||+.++.|.+...... ..... .++| ..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 36688999 99999999843 2335778999999999999999988762111 11111 1222 667
Q ss_pred HHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCC---CcEEEEEecCCCcc-----chhhh-ccCCCCCCcHh--------
Q 043070 159 QHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQ---RRFALLLDDLREPI-----DLKTA-GASIQNGSKVK-------- 221 (414)
Q Consensus 159 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~~-----~~~~~-~~p~~~gs~ii-------- 221 (414)
...|..+|....+. ...+.......+...+.. ...+||||+++... .+-.+ ..+...+++|+
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88888888544322 233344455555555522 34689999998653 12211 22333445544
Q ss_pred hHH-HHHH---HhhcCC----cCCCCchHHHHHHHHHHHhCC--chhHHHHHHHHhcCCCChhHHHHHHHHhccCCC--C
Q 043070 222 YAW-NLFQ---LKVTDD----VLNSHRDIRKHAETVAGLCGG--LPLSLITTGSAMTSIRNPAVWENAVNDLINYPA--E 289 (414)
Q Consensus 222 ~a~-~Lf~---~~a~~~----~~~~~~~l~~~~~~I~~~c~G--lPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~--~ 289 (414)
+-. .|.. ...... ......++.+|.+.-++.+.+ -|=||..+|...+.. ...-+.+++-|..... .
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~--SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV--SGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc--CCHHHHHHHHHHHHHhhcC
Confidence 101 1111 111110 112333555555555555443 256666666644431 1222223322222110 0
Q ss_pred CCCC-ccchhhHH--------HhchhCCCCCChhHHHhHhhh-h------hcCCHHHHHHHH--HHc--C-CccCCCchH
Q 043070 290 FPGM-GDRIFPRL--------KFSYDHLPVKPTKLIFYFMNF-L------IFIRKDDLVDLW--TGE--G-LLRDYHNIA 348 (414)
Q Consensus 290 ~~~~-~~~~~~~l--------~~sy~~L~~~~~k~cfl~lsi-F------~~i~~~~Li~~W--~ae--g-~i~~~~~~~ 348 (414)
.... ...+..++ .-....||.+ . .+||+..+ . ..++...+.... +++ | .+... ..
T Consensus 991 gskVT~eHVrkAleeiE~srI~e~IktLPlH-q-KLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~--pl 1066 (1164)
T PTZ00112 991 GQKIVPRDITEATNQLFDSPLTNAINYLPWP-F-KMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMC--SN 1066 (1164)
T ss_pred CCccCHHHHHHHHHHHHhhhHHHHHHcCCHH-H-HHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCC--Cc
Confidence 0000 11222222 3344578876 4 44444333 2 246666665543 333 1 11111 11
Q ss_pred HHHHHHHHHHHHHHHcCcccccc
Q 043070 349 AARVQGKSIIEGLVLVCLLEEVE 371 (414)
Q Consensus 349 ~~~~~~~~~l~~L~~~sLl~~~~ 371 (414)
.+ ....++.+|...|+|....
T Consensus 1067 -Tq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1067 -NE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred -HH-HHHHHHHHHHhcCeEEecC
Confidence 12 6788999999999986543
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.50 E-value=3.6e-06 Score=83.98 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=39.9
Q ss_pred cCCCccchH-HHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNE---VWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++||.+ .+.. +.+++.......+.++|++|+||||||+.+++..
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346789998 7666 8888877777788999999999999999999877
No 15
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=8.7e-07 Score=86.11 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=68.4
Q ss_pred ccccCCCccchH-HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHHHHHhc
Q 043070 93 EVQDMENTVDVS-RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVMGYRLA 167 (414)
Q Consensus 93 ~~~~~~~~vGr~-~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i~~~l~ 167 (414)
.|.+...|+||+ ++..+...|.+ ...+++.|+|++|+|||||++.+..... .-..| +.+ =..+++..|+.+||
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-~~qL~vNpr-g~eElLr~LL~ALG 334 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-MPAVFVDVR-GTEDTLRSVVKALG 334 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-ceEEEECCC-CHHHHHHHHHHHcC
Confidence 345567899999 99999999954 3346899999999999999999997662 11111 111 11999999999999
Q ss_pred CCCCccCcCCHhHHHHHHHHHh-----C-CCcEEEEEe
Q 043070 168 MSNEVWDDKTKQGRAIDSSRRL-----G-QRRFALLLD 199 (414)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlD 199 (414)
.+.. ....++...|.+.| . |++.+||+-
T Consensus 335 V~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 335 VPNV----EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred CCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 7432 22233444444433 3 567777763
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.5e-06 Score=83.08 Aligned_cols=106 Identities=24% Similarity=0.261 Sum_probs=68.0
Q ss_pred CCCccchH-HH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCc
Q 043070 97 MENTVDVS-RL---NEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEV 172 (414)
Q Consensus 97 ~~~~vGr~-~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~ 172 (414)
-+++||-+ -+ .-|..++..+.+.-...||++|+||||||+.+.... ...|.. +....
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~--------------~sAv~-- 83 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA--------------LSAVT-- 83 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE--------------ecccc--
Confidence 35677776 22 445566677888889999999999999999999977 556622 11111
Q ss_pred cCcCCHhHHHHHHHH-HhCCCcEEEEEecCCCcc-chhhhccC-CCCCCcHh
Q 043070 173 WDDKTKQGRAIDSSR-RLGQRRFALLLDDLREPI-DLKTAGAS-IQNGSKVK 221 (414)
Q Consensus 173 ~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~-~~~~~~~p-~~~gs~ii 221 (414)
....++.+..+.-++ ...|++.+|++|.|-.-. .-+++.+| -.+|..++
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iil 135 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIIL 135 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEE
Confidence 122344444444433 345899999999997554 22233366 55665555
No 17
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.40 E-value=6.7e-07 Score=78.64 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=31.4
Q ss_pred CccchH-HHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVE---DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.||||+ +++++...|. ....+.+.|+|.+|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999 9999999992 3557899999999999999999998887
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=6.8e-07 Score=74.02 Aligned_cols=86 Identities=26% Similarity=0.303 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc--CCCCcchHhH--------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDT--RHNFGLVILV--------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSS 186 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v--~~~F~~~~wv--------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 186 (414)
+.+.+.|+|.+|+|||++++.+.+..... ...-...+|+ ..+...|+..++.... ...+...+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHH
Confidence 34689999999999999999999876210 0002233455 8899999999987763 2356777888888
Q ss_pred HHhCCCcE-EEEEecCCCc
Q 043070 187 RRLGQRRF-ALLLDDLREP 204 (414)
Q Consensus 187 ~~L~~kr~-LlVlDdv~~~ 204 (414)
+.+...+. +||+|++...
T Consensus 81 ~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHCTEEEEEEETTHHH
T ss_pred HHHHhcCCeEEEEeChHhc
Confidence 88877555 9999998664
No 19
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=6.3e-07 Score=82.61 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----------HHHHHHHHH-----HhcCCCCcc
Q 043070 110 WRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----------KRIQHVMGY-----RLAMSNEVW 173 (414)
Q Consensus 110 ~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----------~~l~~~i~~-----~l~~~~~~~ 173 (414)
++.+.. ..-..++|+|.+|+|||||++.+|++.. ..+|+..+|+ .++++.+.. +++.+...
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~- 83 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER- 83 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-
Confidence 344433 3456899999999999999999999983 3489999897 566777622 22221100
Q ss_pred CcCCHhHHHHHHHHH-hCCCcEEEEEecCCCc
Q 043070 174 DDKTKQGRAIDSSRR-LGQRRFALLLDDLREP 204 (414)
Q Consensus 174 ~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~ 204 (414)
...-........... -.|++.+|++|++-..
T Consensus 84 ~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 84 HVQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 000111222233322 2579999999998654
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=98.22 E-value=1e-05 Score=73.97 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCccchH---HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS---RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~---~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|-+ ....+.+.......+.+.|+|.+|+|||+|++.+++..
T Consensus 16 d~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 16 DNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred cccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5566433 22333333333344678999999999999999999986
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.19 E-value=1.1e-05 Score=72.15 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=34.4
Q ss_pred ccCCCccchH-HHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 95 QDMENTVDVS-RLNEVWRLVE-----DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 95 ~~~~~~vGr~-~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-++|||.+ -++++.-.+. ++.+.-+.++|++|+||||||.-+++..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 3447899999 6666554442 2457789999999999999999999988
No 22
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.18 E-value=0.00017 Score=78.04 Aligned_cols=272 Identities=15% Similarity=0.142 Sum_probs=155.9
Q ss_pred CccchH-HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-----CCc-------chHhH---HHHH
Q 043070 99 NTVDVS-RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRH-----NFG-------LVILV---KRIQ 159 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~-----~F~-------~~~wv---~~l~ 159 (414)
.++||+ +++.|...+.. ..-.++.+.|..|||||+|+++|.....+.+. .|+ ...|| +++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 378999 99999999954 55679999999999999999999987733222 222 12233 1111
Q ss_pred H---------------HHHHHhcCCC------------------Ccc--CcCCHh-----HHHHHHHHHhC-CCcEEEEE
Q 043070 160 H---------------VMGYRLAMSN------------------EVW--DDKTKQ-----GRAIDSSRRLG-QRRFALLL 198 (414)
Q Consensus 160 ~---------------~i~~~l~~~~------------------~~~--~~~~~~-----~~~~~l~~~L~-~kr~LlVl 198 (414)
. .|+..++... +.. .+.... .....+..... .|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1 1222222111 100 011111 12223333333 46999999
Q ss_pred ecCCCcc--chhhhccC---C-------CCCCcHh---------------------------hHHHHHHHhhcCCcCCCC
Q 043070 199 DDLREPI--DLKTAGAS---I-------QNGSKVK---------------------------YAWNLFQLKVTDDVLNSH 239 (414)
Q Consensus 199 Ddv~~~~--~~~~~~~p---~-------~~gs~ii---------------------------~a~~Lf~~~a~~~~~~~~ 239 (414)
||+--.+ .++-+... . +..+.+. +.-.+.........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 9994332 11111000 0 0000000 44444444444322
Q ss_pred chHHHHHHHHHHHhCCchhHHHHHHHHhcCC------CChhHHHHHHHHhccCCCCCCCCccchhhHHHhchhCCCCCCh
Q 043070 240 RDIRKHAETVAGLCGGLPLSLITTGSAMTSI------RNPAVWENAVNDLINYPAEFPGMGDRIFPRLKFSYDHLPVKPT 313 (414)
Q Consensus 240 ~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 313 (414)
+...+..+.|.++..|.|+-+..+-..|..+ .+...|..-...+ ......+ .+...+..-.+.||.. .
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i----~~~~~~~-~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL----GILATTD-AVVEFLAARLQKLPGT-T 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc----CCchhhH-HHHHHHHHHHhcCCHH-H
Confidence 2235677889999999999999988888773 2344444322221 1112222 3555788899999998 9
Q ss_pred hHHHhHhhhh-hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHHHHHHcCccccccccc----CCeE---EECHHHH
Q 043070 314 KLIFYFMNFL-IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVEAYF----GNFV---KMHDMIR 385 (414)
Q Consensus 314 k~cfl~lsiF-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~----~~~~---~mH~lv~ 385 (414)
|.-+...|++ ..|+.+.|...+-. ....++....+.|....++-..+.++ .... -.|++++
T Consensus 311 ~~Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 311 REVLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999999 88888888775532 34455666666666665554332111 1122 5688888
Q ss_pred HHHHHH
Q 043070 386 DLALWI 391 (414)
Q Consensus 386 ~~a~~~ 391 (414)
+.|-..
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 777543
No 23
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.4e-05 Score=73.83 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC---cchHhH----HHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF---GLVILV----KRIQHVMGYR 165 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F---~~~~wv----~~l~~~i~~~ 165 (414)
+.+.+|+ +++++...|.. ....-+.|+|.+|+|||+.++.+.+......... ...+|. .+++..|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4488999 99999999843 3333499999999999999999999883222222 233344 8899999999
Q ss_pred hcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCcc
Q 043070 166 LAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREPI 205 (414)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~ 205 (414)
++..+. ......+..+.+.+.+. ++.+++|||+++...
T Consensus 97 ~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 97 LGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred cCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 973332 45666777777888775 488999999998664
No 24
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=9.8e-06 Score=67.67 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.9
Q ss_pred cchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 101 VDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 101 vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|++ .+..+...+.......+.|+|.+|+|||++++.+++..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3677 88888888876667789999999999999999999987
No 25
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=5e-06 Score=80.32 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----------HHHHHHHHHHhcCCCCccCcC
Q 043070 108 EVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----------KRIQHVMGYRLAMSNEVWDDK 176 (414)
Q Consensus 108 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----------~~l~~~i~~~l~~~~~~~~~~ 176 (414)
++++++.. ..-....|+|++|+||||||+.+|+... ..+|+.++|| .++++.|...+-... ++..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 34444433 3446789999999999999999999983 3499999998 345555542211111 0111
Q ss_pred CH------hHHHHHHHHH-hCCCcEEEEEecCCCc
Q 043070 177 TK------QGRAIDSSRR-LGQRRFALLLDDLREP 204 (414)
Q Consensus 177 ~~------~~~~~~l~~~-L~~kr~LlVlDdv~~~ 204 (414)
.. ....+..... -.|+++||++|++-..
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11 1112222222 2679999999998554
No 26
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=0.00026 Score=72.09 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=40.0
Q ss_pred CCCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|.+ .++++.+|+.. ...+.+.|+|++|+||||+|+.+++..
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999 99999999954 226789999999999999999999987
No 27
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00048 Score=63.25 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=38.4
Q ss_pred cCCCccchH-HHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNEVWRLVE-----DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+|||.+ -++++.=.+. ++.+.-+.++|++|.||||||.-+++..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 346799999 7776665553 2567889999999999999999999988
No 28
>PF05729 NACHT: NACHT domain
Probab=97.95 E-value=1.3e-05 Score=68.86 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----CcchHhH-------H----HHHHHHHHHhcCCCCccCcCCHhHHHH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHN----FGLVILV-------K----RIQHVMGYRLAMSNEVWDDKTKQGRAI 183 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~----F~~~~wv-------~----~l~~~i~~~l~~~~~~~~~~~~~~~~~ 183 (414)
+++.|+|.+|+||||+++.++.... .... +...+|+ . .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5789999999999999999998872 2222 2233344 1 23333333332211 11111
Q ss_pred HHHHH-hCCCcEEEEEecCCCcc
Q 043070 184 DSSRR-LGQRRFALLLDDLREPI 205 (414)
Q Consensus 184 ~l~~~-L~~kr~LlVlDdv~~~~ 205 (414)
.+... -..++++||||++++..
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcc
Confidence 22222 25789999999998764
No 29
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.6e-05 Score=77.24 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----------HHHHHHHHHHhcCCCCccCcCC----HhHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----------KRIQHVMGYRLAMSNEVWDDKT----KQGR 181 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----------~~l~~~i~~~l~~~~~~~~~~~----~~~~ 181 (414)
..-..++|+|.+|+|||||++.+++... .++|+..+|| .++++.|+..+-.......... .+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3456899999999999999999999983 4579988898 5667777443322211001111 1112
Q ss_pred HHHHHHH-hCCCcEEEEEecCCCc
Q 043070 182 AIDSSRR-LGQRRFALLLDDLREP 204 (414)
Q Consensus 182 ~~~l~~~-L~~kr~LlVlDdv~~~ 204 (414)
.+..... -.|++.+|++|++-..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 2222222 2589999999998654
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.75 E-value=4.3e-05 Score=72.14 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCccchH----HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCcc
Q 043070 98 ENTVDVS----RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVW 173 (414)
Q Consensus 98 ~~~vGr~----~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~ 173 (414)
.+.||.+ +-.-|.+++..+.++.+.+||++|.||||||+.+.+.. +.+- ..| +.......
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrf-----------velSAt~a 201 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRF-----------VELSATNA 201 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEE-----------EEEecccc
Confidence 4566766 22345556677889999999999999999999999987 3330 001 11111001
Q ss_pred CcCCHhHHHHHHHHH--hCCCcEEEEEecCCCcc--chhhhccC-CCCCCcHh
Q 043070 174 DDKTKQGRAIDSSRR--LGQRRFALLLDDLREPI--DLKTAGAS-IQNGSKVK 221 (414)
Q Consensus 174 ~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~--~~~~~~~p-~~~gs~ii 221 (414)
...+...+.+.-++. +.++|..|++|.|-.-. +.+. .+| -.+|+.++
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~-fLP~VE~G~I~l 253 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT-FLPHVENGDITL 253 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc-ccceeccCceEE
Confidence 223334444444443 56789999999996443 3333 356 44554444
No 31
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=0.0001 Score=63.98 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVIL 154 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~w 154 (414)
+.|.|+|++|+||||||+.+++......-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987322255676665
No 32
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.71 E-value=7.3e-05 Score=79.04 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCccchH-HHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLN---EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-++++|.+ .+. .+.+.+.......+.++|++|+||||||+.+++..
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689998 663 56677777777788999999999999999999877
No 33
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00018 Score=68.59 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCccchH-HHHHHHHHhhcCC---ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS---VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVMGYR 165 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i~~~ 165 (414)
+.+.+|+ ++..+..++.+.. +..|-|.|-.|.|||.+.+++.+.. .. + .+|+ ..+++.|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~--~---~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL--E---NVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC--c---ceeeehHHhccHHHHHHHHHHH
Confidence 4577999 9999999996633 3455889999999999999999988 22 2 2455 8888999998
Q ss_pred hcCCCC-cc-Cc---CCHhHHHHHHHH--HhC--CCcEEEEEecCCCccchhhh
Q 043070 166 LAMSNE-VW-DD---KTKQGRAIDSSR--RLG--QRRFALLLDDLREPIDLKTA 210 (414)
Q Consensus 166 l~~~~~-~~-~~---~~~~~~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~~ 210 (414)
++..+. .. .. .+..+....+.+ ... ++.++||||+++...+.+++
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ 133 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAI 133 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchH
Confidence 863221 11 11 122233333333 122 45899999999887665554
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00074 Score=68.77 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|-+ .++.|.+++....+. .+.++|++|+||||+|+.+++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 889999998776554 56999999999999999999887
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=97.64 E-value=0.0003 Score=67.76 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.7
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.|.+++..++.+-+.++|++|+||||+|..+++..
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999 88888888877777778899999999999999999876
No 36
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.63 E-value=0.00095 Score=59.58 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcC
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDK 176 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~ 176 (414)
.++||-+ .++.+.-...+++.+-+.|.||+|+||||-+..+++... ...+ ++-+-.|..+ ++.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~----------ke~vLELNAS----deR 90 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL--GDSY----------KEAVLELNAS----DER 90 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh--Chhh----------hhHhhhccCc----ccc
Confidence 6789999 888877777888899999999999999999998888762 1111 1111122222 223
Q ss_pred CHhHHHHHHHHHhC-------CCcEEEEEecCCCcc
Q 043070 177 TKQGRAIDSSRRLG-------QRRFALLLDDLREPI 205 (414)
Q Consensus 177 ~~~~~~~~l~~~L~-------~kr~LlVlDdv~~~~ 205 (414)
..+....+++.+-+ ++.-.+|||..++..
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 34444455544432 455678999998864
No 37
>PRK08727 hypothetical protein; Validated
Probab=97.63 E-value=0.00057 Score=62.68 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCccchH--HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS--RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~--~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|++.. .+..+...........+.|+|..|+|||.|++.+++..
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4466444 55555544444444679999999999999999998876
No 38
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.61 E-value=0.00031 Score=69.45 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=62.2
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----HHHHHHHHHHhcCCCCc
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----KRIQHVMGYRLAMSNEV 172 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----~~l~~~i~~~l~~~~~~ 172 (414)
.++++.+ ..+.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.|| .--..+.+.........
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 4577788 999999998753 578889999999999999999887 333456666666 22222332222111100
Q ss_pred cCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCcc
Q 043070 173 WDDKTKQGRAIDSSRRLG--QRRFALLLDDLREPI 205 (414)
Q Consensus 173 ~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~ 205 (414)
+.. ......+.+...-. +++++||+|++....
T Consensus 252 y~~-~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 252 FRR-KDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred eEe-cCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 000 00111222222222 468999999986554
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=6.7e-05 Score=61.81 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999988
No 40
>PF13173 AAA_14: AAA domain
Probab=97.56 E-value=0.00024 Score=58.64 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=46.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALL 197 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 197 (414)
-+++.|.|+.|+|||||+++++++. . .....+++ .............+..+.+.+...+++.+|+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 66 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYI-----------NFDDPRDRRLADPDLLEYFLELIKPGKKYIF 66 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceee-----------ccCCHHHHHHhhhhhHHHHHHhhccCCcEEE
Confidence 3689999999999999999999887 1 11122222 0000000000000023344444445788999
Q ss_pred EecCCCccchhhh
Q 043070 198 LDDLREPIDLKTA 210 (414)
Q Consensus 198 lDdv~~~~~~~~~ 210 (414)
||++....+|...
T Consensus 67 iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 67 IDEIQYLPDWEDA 79 (128)
T ss_pred EehhhhhccHHHH
Confidence 9999988888766
No 41
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00017 Score=78.10 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++||+ +++++++.|......-+.++|.+|+|||++|..++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999977555667799999999999999998876
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.56 E-value=0.00026 Score=64.39 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=36.3
Q ss_pred CCcc-c-hH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTV-D-VS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~v-G-r~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+ | .+ .++.+.+++.......+.|+|.+|+|||+||+.+++..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3454 3 44 78888888766667789999999999999999999877
No 43
>PRK07261 topology modulation protein; Provisional
Probab=97.50 E-value=0.0002 Score=62.36 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEe
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLD 199 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlD 199 (414)
.|.|+|++|+||||||+.+........-+.|...|- +.....+.++....+.+.+.+.+ .|+|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--wIid 64 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---------------PNWQERDDDDMIADISNFLLKHD--WIID 64 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec---------------cccccCCHHHHHHHHHHHHhCCC--EEEc
Confidence 589999999999999999987651111122322220 01133455677777888887766 5778
Q ss_pred cCCC
Q 043070 200 DLRE 203 (414)
Q Consensus 200 dv~~ 203 (414)
+...
T Consensus 65 g~~~ 68 (171)
T PRK07261 65 GNYS 68 (171)
T ss_pred Ccch
Confidence 7643
No 44
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.0015 Score=63.92 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=79.4
Q ss_pred cCCCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHH
Q 043070 96 DMENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVM 162 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i 162 (414)
++..++||+ ++..+.+++.. ....-+-|.|-+|.|||.+...++.+...-...| +++.+ ..+...|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHH
Confidence 557889999 99999999843 4567888999999999999999998872111111 22333 5666666
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCC--cEEEEEecCCCcc-----chhhh-ccCCCCCCcHh
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQR--RFALLLDDLREPI-----DLKTA-GASIQNGSKVK 221 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~-----~~~~~-~~p~~~gs~ii 221 (414)
...+..... ......+....+.++..+. -+|+|||.++... .+..+ .+|.-+++++|
T Consensus 227 ~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~i 291 (529)
T KOG2227|consen 227 FSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRII 291 (529)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceee
Confidence 666511110 1112256667777777664 5999999997653 22222 44545566666
No 45
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.47 E-value=0.0015 Score=68.44 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=40.6
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.++|++ .+..+.+.+.......+.|+|++|+||||||+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 346789999 99989888876667789999999999999999998766
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.44 E-value=0.00022 Score=76.39 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++||+ +++++++.|......-+.++|.+|+|||++|+.+++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5789999 99999999977666667899999999999999999876
No 47
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.00013 Score=66.37 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
-.++|+|..|+|||||...+.... ...|+.++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEE
Confidence 468899999999999999999887 6788666555
No 48
>PRK09087 hypothetical protein; Validated
Probab=97.38 E-value=0.0021 Score=58.65 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.+.|+|..|+|||+|++.+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988766
No 49
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.0034 Score=57.93 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcE
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRF 194 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 194 (414)
....+.++|.+|+|||+||.++++... .....++++ .+++..|-...... .... .+.+.+ .+--
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~~l~~~l~~~~~~~------~~~~----~~l~~l-~~~d 165 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVPDVMSRLHESYDNG------QSGE----KFLQEL-CKVD 165 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHHHHHHHHHHHHhcc------chHH----HHHHHh-cCCC
Confidence 346899999999999999999999882 222233444 55666554443211 1112 222223 4567
Q ss_pred EEEEecCCC
Q 043070 195 ALLLDDLRE 203 (414)
Q Consensus 195 LlVlDdv~~ 203 (414)
||||||+..
T Consensus 166 LLiIDDlg~ 174 (248)
T PRK12377 166 LLVLDEIGI 174 (248)
T ss_pred EEEEcCCCC
Confidence 999999943
No 50
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.35 E-value=0.00022 Score=62.32 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
...+|.++|+.|+||||+|+.+++.. ...+...+++ .+-+++++...+.... ...........+.+.+......
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~~d~~r~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~g~~ 80 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLDGDELREILGHYGYDKQ--SRIEMALKRAKLAKFLADQGMI 80 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEecHHHHhhcCCCCCCHH--HHHHHHHHHHHHHHHHHhCCCE
Confidence 45699999999999999999999988 4455555555 3333433322221110 1111112233445555555567
Q ss_pred EEEecC
Q 043070 196 LLLDDL 201 (414)
Q Consensus 196 lVlDdv 201 (414)
+|.|.+
T Consensus 81 VI~~~~ 86 (176)
T PRK05541 81 VIVTTI 86 (176)
T ss_pred EEEEeC
Confidence 777765
No 51
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.35 E-value=0.00018 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0078 Score=64.36 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=39.5
Q ss_pred CCccchH-HHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRI-ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||-+ -+..|.+++..+++.- +.++|..|+||||+|+.+++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999 9999999998766554 5899999999999999999887
No 53
>PHA00729 NTP-binding motif containing protein
Probab=97.34 E-value=0.00076 Score=60.85 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.8
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 108 EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++.+.+.....|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555655666789999999999999999999875
No 54
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00046 Score=64.60 Aligned_cols=72 Identities=24% Similarity=0.222 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEE
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFAL 196 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~Ll 196 (414)
..+.++|.+|+|||.||..+++... ..-..++++ ..++..|........ ..+.. .+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~ll~~i~~~~~~~~----~~~~~----~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQLLNRIKSTYKSSG----KEDEN----EIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhccc----cccHH----HHHHHhcCCC-EE
Confidence 4588999999999999999999882 222333444 666666665543221 11222 2334455444 89
Q ss_pred EEecCC
Q 043070 197 LLDDLR 202 (414)
Q Consensus 197 VlDdv~ 202 (414)
||||+-
T Consensus 183 viDDlg 188 (268)
T PRK08116 183 ILDDLG 188 (268)
T ss_pred EEeccc
Confidence 999994
No 55
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00057 Score=56.25 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.|+|.+|+||||+++.++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 578999999999999999999887
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.32 E-value=0.0003 Score=69.05 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=37.0
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|++ .+++|.+.+.- ...+-+.++|++|+|||++|+.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4567999 99999887731 234569999999999999999999987
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.31 E-value=0.0003 Score=76.30 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++||+ ++.++++.|......-+.++|.+|+|||++|..++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 99999999977666677799999999999999999876
No 58
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.31 E-value=0.0019 Score=58.58 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
...+-|+|..|+|||.|.+++++...+.... ..++++ .++...+...+.... ...+++.+. .-=+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~~~~f~~~~~~~~~~~~-----------~~~~~~~~~-~~Dl 100 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLSAEEFIREFADALRDGE-----------IEEFKDRLR-SADL 100 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEEHHHHHHHHHHHHHTTS-----------HHHHHHHHC-TSSE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeecHHHHHHHHHHHHHccc-----------chhhhhhhh-cCCE
Confidence 4568999999999999999999987211111 122333 566666665554321 123444444 3446
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|+|||+...
T Consensus 101 L~iDDi~~l 109 (219)
T PF00308_consen 101 LIIDDIQFL 109 (219)
T ss_dssp EEEETGGGG
T ss_pred EEEecchhh
Confidence 778888654
No 59
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.30 E-value=0.00033 Score=75.77 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=41.0
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++|||+ ++.++++.|......-+.++|.+|+||||+|..+++..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 36789999 99999999977666677899999999999999999876
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.00038 Score=75.73 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|||+ ++.++++.|......-+.++|.+|+|||++|..+++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999977666667799999999999999998876
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0038 Score=59.96 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=38.2
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|-+ -++.+.+++..+.+ ....++|+.|+||||+|+.+++..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 4578989 89999999976554 567899999999999999999865
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0028 Score=65.44 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||-+ .++.|.+++..+++ ..+.++|..|+||||+|+.+.+..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999977664 456899999999999999999877
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.27 E-value=0.00042 Score=68.50 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|++ .++++.+.+.. ...+-|.++|++|+|||++|+.+++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 3466999 99998887621 345679999999999999999999987
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.002 Score=64.58 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=40.1
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+++||-+ .+..|..++..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999 999999999877654 58999999999999999999876
No 65
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.25 E-value=0.00059 Score=61.93 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred cccccCCCccchH-HHHHHHHHh----hcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHh
Q 043070 92 VEVQDMENTVDVS-RLNEVWRLV----EDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRL 166 (414)
Q Consensus 92 ~~~~~~~~~vGr~-~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l 166 (414)
.++.+.+.++|.| .++.|++-. ......-+.++|..|.|||+|++++.+.+. -+. ++-+
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~-~~G---------------LRlI 84 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA-DQG---------------LRLI 84 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh-hcC---------------ceEE
Confidence 3444557799999 888887754 334566788899999999999999998872 111 1111
Q ss_pred cCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCC
Q 043070 167 AMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLR 202 (414)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 202 (414)
..... .-.+...+.+.|+. ...||+|++||+.
T Consensus 85 ev~k~--~L~~l~~l~~~l~~--~~~kFIlf~DDLs 116 (249)
T PF05673_consen 85 EVSKE--DLGDLPELLDLLRD--RPYKFILFCDDLS 116 (249)
T ss_pred EECHH--HhccHHHHHHHHhc--CCCCEEEEecCCC
Confidence 11110 12333444444442 4579999999985
No 66
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.001 Score=64.36 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcch-HhH---------HHHHHHHHHHhcCCCCcc
Q 043070 105 RLNEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLV-ILV---------KRIQHVMGYRLAMSNEVW 173 (414)
Q Consensus 105 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~-~wv---------~~l~~~i~~~l~~~~~~~ 173 (414)
-..++++.+.. ..-..+.|+|.+|+|||||++.+++... .++-+.. +|+ .++.+.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 44457777754 3445779999999999999999998772 2222333 343 777777777666433110
Q ss_pred CcCC---HhHHHHHHHHHh--CCCcEEEEEecCCCc
Q 043070 174 DDKT---KQGRAIDSSRRL--GQRRFALLLDDLREP 204 (414)
Q Consensus 174 ~~~~---~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 204 (414)
.... .......+.+++ .+++.+||+|++-..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1111 111122222333 579999999998544
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0028 Score=66.44 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=38.9
Q ss_pred CCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++||.+ .++.|.+++..++ ...+.++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 9999999997755 3466799999999999999998876
No 68
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.0048 Score=56.74 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccccCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 93 EVQDMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 93 ~~~~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+...+.++. ....++.+|.+. ..+.++|..|.|||+||..+..+.
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 334445566788 888888888654 599999999999999999988753
No 69
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.17 E-value=0.0039 Score=57.99 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=46.3
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchH
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVI 153 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~ 153 (414)
..+++|-+ .+.-|.+.+.....+....+|++|.|||+-|..++.... -.+.|.+++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rv 91 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRV 91 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccch
Confidence 36688999 999999999777889999999999999999999988772 245666554
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.13 E-value=0.0075 Score=58.83 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+++.++.. ..+.++|++|+||||+|+.+.+..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999 99999999976554 467899999999999999998876
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0091 Score=60.80 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=39.0
Q ss_pred CCCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||-+ -+..|.+.+..++ ...+.++|+.|+||||+|+.+++..
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999 8888888886655 3578899999999999999999877
No 72
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.11 E-value=0.0038 Score=58.55 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcc------hHhH--------HHHHHHHHHHhc
Q 043070 105 RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGL------VILV--------KRIQHVMGYRLA 167 (414)
Q Consensus 105 ~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~------~~wv--------~~l~~~i~~~l~ 167 (414)
-++++.++|.. ...+-+.|||.+|.|||++++.+.+.+. ..++. ++.| ..+...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp---~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP---PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC---CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 45555555533 3456799999999999999999998872 23321 1222 999999999999
Q ss_pred CCCCccCcCCHhHHHHHHHHHhCC-CcEEEEEecCCC
Q 043070 168 MSNEVWDDKTKQGRAIDSSRRLGQ-RRFALLLDDLRE 203 (414)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 203 (414)
.+.. ...+...+...+...|+. +--+||+|.+-+
T Consensus 122 aP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 122 APYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred cccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 8874 344555566666666655 556889998754
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0062 Score=62.77 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+.+..+.+ ..+.++|+.|+||||+|+.+++..
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999966543 468899999999999999999876
No 74
>PF14516 AAA_35: AAA-like domain
Probab=97.09 E-value=0.017 Score=55.91 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=98.9
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcc----------------hHhHHHH
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGL----------------VILVKRI 158 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~----------------~~wv~~l 158 (414)
..+..|.|. .-+++.+.|.++ -..+.|.|+-.+|||+|...+.+.... ..+.+ --|...+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 345578999 788888888653 368999999999999999999887731 12211 1122566
Q ss_pred HHHHHHHhcCCCCcc-----CcCCHhHHHHHHHHHh---CCCcEEEEEecCCCccc--------------h---------
Q 043070 159 QHVMGYRLAMSNEVW-----DDKTKQGRAIDSSRRL---GQRRFALLLDDLREPID--------------L--------- 207 (414)
Q Consensus 159 ~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~--------------~--------- 207 (414)
...|.++|+....-. ...+.......+.+++ .+++.+|+||+++.... |
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 667777776543210 1112233344454443 25899999999985432 1
Q ss_pred -hhhccC--CCCCCcHh----------------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHH
Q 043070 208 -KTAGAS--IQNGSKVK----------------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLIT 262 (414)
Q Consensus 208 -~~~~~p--~~~gs~ii----------------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 262 (414)
..+.+- +....-++ +...|+.+.-.. .. ....++|...++|+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC---HHHHHHHHHHHCCCHHHHHH
Confidence 111000 00000000 555555544211 11 22278899999999999999
Q ss_pred HHHHhcCC
Q 043070 263 TGSAMTSI 270 (414)
Q Consensus 263 ~g~~L~~~ 270 (414)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999763
No 75
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.06 E-value=0.00088 Score=64.54 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=39.2
Q ss_pred CccchH-HHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVED------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++|.+ .++++++++.. ...+++.++|++|+||||||..+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999 99999999943 345889999999999999999999888
No 76
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.05 E-value=0.0011 Score=65.64 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMG 163 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~ 163 (414)
.++.|.+ .+++|.+.+. . ...+-+.++|++|+|||+||+.+++.. ...|-...- ..+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~-s~l~---- 216 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVG-SEFV---- 216 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEeh-HHHH----
Confidence 3456888 8888877662 1 245789999999999999999999987 344411100 1111
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
... .......+.+.+.......+.+|+||+++.
T Consensus 217 ~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 217 QKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred HHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 111 011112222233333456789999999854
No 77
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.04 E-value=0.00076 Score=65.29 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|++ .++.+.+++..+..+.+.++|++|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 99999999987776678899999999999999998876
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0013 Score=70.00 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=38.9
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++||+ ++.++++.|......-+.++|.+|+|||++|+.+++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999976544566789999999999999999865
No 79
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0022 Score=64.66 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGY 164 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~ 164 (414)
+++-|.+ .+.++.+++.. ...+-|.++|++|.|||.||+++++.. .-.|-.+ -.-+|+.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~i-----sApeivS 261 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSI-----SAPEIVS 261 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCceEee-----cchhhhc
Confidence 3455888 88888887732 346778999999999999999999988 2233100 0111221
Q ss_pred HhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCc
Q 043070 165 RLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
.. ...+.+.+.+...+.-..-.+++++|+++-.
T Consensus 262 Gv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 262 GV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred cc-------CcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 11 3344555555555666778999999999743
No 80
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0011 Score=60.35 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=33.3
Q ss_pred hH-HHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 103 VS-RLNEVWRLVE---DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 103 r~-~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|. -+++|.+.+. .+...+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 55 6677777774 3567899999999999999999999877
No 81
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.002 Score=59.76 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
..-+.|+|++|+|||+||..+.+... ...+ .+.|+ .++...+..... ... ....+.. + .+.-|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~-~v~f~t~~~l~~~l~~~~~-------~~~---~~~~l~~-l-~~~dl 162 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGH-RVLFATAAQWVARLAAAHH-------AGR---LQAELVK-L-GRYPL 162 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCC-chhhhhHHHHHHHHHHHHh-------cCc---HHHHHHH-h-ccCCE
Confidence 45689999999999999999988762 2222 23344 445554433211 111 1222332 2 23568
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|||||+...
T Consensus 163 LIIDD~g~~ 171 (254)
T PRK06526 163 LIVDEVGYI 171 (254)
T ss_pred EEEcccccC
Confidence 999999643
No 82
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.98 E-value=0.0011 Score=61.61 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----------HHHHHHHHHHhcCCCC----ccCcCC-Hh--
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----------KRIQHVMGYRLAMSNE----VWDDKT-KQ-- 179 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----------~~l~~~i~~~l~~~~~----~~~~~~-~~-- 179 (414)
+-..++|+|..|+|||||++.+++.. +.+|+..+++ .++.+.+...-..... ...+.. ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34678999999999999999999988 4456544444 3344444332111000 001111 11
Q ss_pred ---HHHHHHHHHh--C-CCcEEEEEecCCCc
Q 043070 180 ---GRAIDSSRRL--G-QRRFALLLDDLREP 204 (414)
Q Consensus 180 ---~~~~~l~~~L--~-~kr~LlVlDdv~~~ 204 (414)
...-.+.+++ + ++.+||++||+-..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1222345555 3 89999999998543
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.0041 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+.|+|..|+|||.|++.+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998876
No 84
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.0018 Score=67.43 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=40.1
Q ss_pred cccCCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 94 VQDMENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 94 ~~~~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|...++++|-+ .++++..+|.. ....++.|+|++|+||||+++.++...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33446789999 99999999855 233579999999999999999999866
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.01 Score=61.97 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||.+ .+..|.+++..+++ ..+.++|..|+||||+|+.+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 6789999 99999999987664 468999999999999999998875
No 86
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.0025 Score=59.49 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHH
Q 043070 106 LNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAI 183 (414)
Q Consensus 106 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~ 183 (414)
+....+|+.. ..-+.++|.+|+|||.||..+.+.. ......+.|+ .++...+..... ..+.+....
T Consensus 96 L~~~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~~~L~~~l~~a~~-------~~~~~~~l~ 163 (269)
T PRK08181 96 IAAGDSWLAK--GANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRTTDLVQKLQVARR-------ELQLESAIA 163 (269)
T ss_pred HHHHHHHHhc--CceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeHHHHHHHHHHHHh-------CCcHHHHHH
Confidence 3333356643 3459999999999999999999876 2223333444 555555543321 112222222
Q ss_pred HHHHHhCCCcEEEEEecCCC
Q 043070 184 DSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 184 ~l~~~L~~kr~LlVlDdv~~ 203 (414)
.+. +--||||||+..
T Consensus 164 ----~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 164 ----KLD-KFDLLILDDLAY 178 (269)
T ss_pred ----HHh-cCCEEEEecccc
Confidence 222 345999999854
No 87
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.88 E-value=0.0012 Score=66.98 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.+ .++++.+.+.- ...+-+.++|++|.|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4567899 99888887621 245678999999999999999999987
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0051 Score=61.96 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
..-+.|+|..|+|||+|++.+.+.... ...-..++++ ..+...+...++... ...+.+++.+. +.-+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~~~f~~~~~~~l~~~~---------~~~~~~~~~~~-~~dv 209 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSGDEFARKAVDILQKTH---------KEIEQFKNEIC-QNDV 209 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHHHHHHHHHHHHHhh---------hHHHHHHHHhc-cCCE
Confidence 356899999999999999999996621 1111222344 677777777765311 11233444444 3458
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|||||+...
T Consensus 210 LiIDDiq~l 218 (450)
T PRK14087 210 LIIDDVQFL 218 (450)
T ss_pred EEEeccccc
Confidence 889999654
No 89
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.83 E-value=0.0048 Score=56.76 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=50.1
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhH
Q 043070 105 RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQG 180 (414)
Q Consensus 105 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~ 180 (414)
.+..+.+...+ .....+.++|.+|+|||+||..+++... ..-..++++ .++...+-..... ...+.+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~~l~~~l~~~~~~-----~~~~~~~ 155 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVADIMSAMKDTFSN-----SETSEEQ 155 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHHHHHHHHHHHHhh-----ccccHHH
Confidence 34444444432 2345789999999999999999999872 222222333 5555555443321 1122222
Q ss_pred HHHHHHHHhCCCcEEEEEecCCCc
Q 043070 181 RAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 181 ~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
+.+.+. +.=||||||+...
T Consensus 156 ----~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 156 ----LLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred ----HHHHhc-cCCEEEEeCCCCC
Confidence 333455 4558889999654
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.019 Score=59.78 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=39.3
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+++||-+ -+..|.+++..+.+ ..+.++|..|+||||+|+.+.+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999977655 567899999999999999998766
No 91
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.013 Score=61.30 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||-+ -++.|.+++..+.+ ..+.++|..|+||||+|+.+++..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999998876554 456899999999999999999876
No 92
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.00088 Score=58.69 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999999877
No 93
>PRK00625 shikimate kinase; Provisional
Probab=96.78 E-value=0.0047 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 94
>PRK06547 hypothetical protein; Provisional
Probab=96.78 E-value=0.0022 Score=55.83 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 109 VWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 109 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...+......+|+|.|.+|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455678899999999999999999998875
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0026 Score=63.91 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-chHhH--HHHHHHHHHHhcCCCCccCcCCHhHHH
Q 043070 107 NEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-LVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRA 182 (414)
Q Consensus 107 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~ 182 (414)
....+...+ ....-+.|+|.+|+|||+|++.+++... +.+.. .++|+ .++...+...+... +.+
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~~~f~~~~~~~~~~~-------~~~--- 185 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITSEKFLNDLVDSMKEG-------KLN--- 185 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEHHHHHHHHHHHHhcc-------cHH---
Confidence 344444433 2245699999999999999999999872 22222 33455 66667776665422 122
Q ss_pred HHHHHHhCCCcEEEEEecCCCc
Q 043070 183 IDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 183 ~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
.+++.+..+.-+|+|||+...
T Consensus 186 -~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 186 -EFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred -HHHHHHHhcCCEEEEechhhh
Confidence 233334445668999999743
No 96
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.75 E-value=0.0051 Score=62.98 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=52.6
Q ss_pred CCccchH-HHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE---D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVMG 163 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i~ 163 (414)
.+++|.+ .++++.+++. . ...+-+.++|++|+|||+||+.+++.. .-.| .... ..+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~--~~~~---- 125 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISG--SDFV---- 125 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccH--HHHH----
Confidence 4577887 6666655442 1 234568899999999999999999877 2333 1110 1111
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
... .......+...+.......+.+|+|||++.
T Consensus 126 ~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 126 EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred HHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 110 011222333334444456778999999965
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.74 E-value=0.0019 Score=61.98 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|++ .++.+.+++.....+.+.++|.+|+||||+|+.+.+..
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999 99999999987766778999999999999999999876
No 98
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.0048 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+.|+|.+|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998765
No 99
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0066 Score=53.09 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
.|.|.|.+|+||||+|+.+.+... -.|.+..-|.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 578999999999999999999873 3455533333
No 100
>PRK07667 uridine kinase; Provisional
Probab=96.72 E-value=0.0024 Score=56.68 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=29.7
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666643 445799999999999999999998876
No 101
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.71 E-value=0.0024 Score=56.83 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCcc-CcCCHhHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEVW-DDKTKQGRAIDSSR 187 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 187 (414)
+++|.+||+.|+||||.+.+++... ..+ -..+..+ .+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4799999999999999888887777 222 2222233 566677777777653211 12233333333223
Q ss_pred HhCC-CcEEEEEecC
Q 043070 188 RLGQ-RRFALLLDDL 201 (414)
Q Consensus 188 ~L~~-kr~LlVlDdv 201 (414)
.+.. +.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 3333 3456777754
No 102
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0031 Score=56.35 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHH-----HHHHHHhcCCCCccCcCCHhHHHHHHHHHhCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQ-----HVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQ 191 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~-----~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 191 (414)
++.+|+|.|.+|+||||+|+.++... ...+-..+-..... ..........-+.....+.+-+.+.|...+.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 45799999999999999999999988 32211111100011 11111111111122567788888999999999
Q ss_pred Cc
Q 043070 192 RR 193 (414)
Q Consensus 192 kr 193 (414)
++
T Consensus 84 ~~ 85 (218)
T COG0572 84 KP 85 (218)
T ss_pred Cc
Confidence 87
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0071 Score=57.51 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=38.3
Q ss_pred cchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 043070 101 VDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF 149 (414)
Q Consensus 101 vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F 149 (414)
-|-+ .+++|.+.+. + +.++-|.++|++|.|||-||++|+++. ...|
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF 213 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF 213 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE
Confidence 3788 8888888762 1 567889999999999999999999988 5666
No 104
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0034 Score=59.92 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRL 189 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L 189 (414)
+.-+++-|+|.+|+||||||.++.... ...-..++|+ ..+-...+++++...+. ....+.++....+...+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 345799999999999999999987766 2223444566 33333445555543221 12344566666666555
Q ss_pred C-CCcEEEEEecCCCc
Q 043070 190 G-QRRFALLLDDLREP 204 (414)
Q Consensus 190 ~-~kr~LlVlDdv~~~ 204 (414)
+ +.--+||+|.+-..
T Consensus 130 ~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 130 RSGAVDIIVVDSVAAL 145 (321)
T ss_pred hccCCcEEEEcchhhh
Confidence 4 46778999987543
No 105
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0045 Score=57.45 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcch-HhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHH
Q 043070 107 NEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLV-ILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDS 185 (414)
Q Consensus 107 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~-~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l 185 (414)
..+.+++. +..-+.++|.+|+|||.||.++.+.. . +..+... +.+.++..++....... ....+|
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~sv~f~~~~el~~~Lk~~~~~~----------~~~~~l 161 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGISVLFITAPDLLSKLKAAFDEG----------RLEEKL 161 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCCeEEEEEHHHHHHHHHHHHhcC----------chHHHH
Confidence 33344444 66789999999999999999999998 2 3333222 22266777666655431 112223
Q ss_pred HHHhCCCcEEEEEecCCCc
Q 043070 186 SRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 186 ~~~L~~kr~LlVlDdv~~~ 204 (414)
.+.++ +-=||||||+-..
T Consensus 162 ~~~l~-~~dlLIiDDlG~~ 179 (254)
T COG1484 162 LRELK-KVDLLIIDDIGYE 179 (254)
T ss_pred HHHhh-cCCEEEEecccCc
Confidence 33222 2358899998653
No 106
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.67 E-value=0.0016 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 107
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.66 E-value=0.0034 Score=56.35 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
.-.++.|+|.+|+|||++|.++.... ......++|+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi 46 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYI 46 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEE
Confidence 45799999999999999999988765 1223444555
No 108
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.0089 Score=54.33 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC------cchHhH-------HHHHHHHHHHhcCCCC-------ccCcC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF------GLVILV-------KRIQHVMGYRLAMSNE-------VWDDK 176 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F------~~~~wv-------~~l~~~i~~~l~~~~~-------~~~~~ 176 (414)
.-.++.|+|.+|+|||+||..++... ...- ..++|+ ..-+..+....+.... -....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999999987665 1122 334555 2223333333221110 01223
Q ss_pred CHhHHHHHHHHHhC----CCcEEEEEecCCC
Q 043070 177 TKQGRAIDSSRRLG----QRRFALLLDDLRE 203 (414)
Q Consensus 177 ~~~~~~~~l~~~L~----~kr~LlVlDdv~~ 203 (414)
+.+++...+.+.+. .+--|+|+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 45555555555543 3455888888743
No 109
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.62 E-value=0.0034 Score=60.44 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+..+.|+|++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999988
No 110
>PRK10867 signal recognition particle protein; Provisional
Probab=96.61 E-value=0.0065 Score=60.55 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|.+|+||||.|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999888877655
No 111
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.60 E-value=0.0043 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|+|.+|+|||++|.+++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 112
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.60 E-value=0.0019 Score=57.36 Aligned_cols=75 Identities=19% Similarity=0.085 Sum_probs=42.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-----chHhH----HHH-HHHHHHHh--cCCCCccCcCCHhHHHHHHHH
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-----LVILV----KRI-QHVMGYRL--AMSNEVWDDKTKQGRAIDSSR 187 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-----~~~wv----~~l-~~~i~~~l--~~~~~~~~~~~~~~~~~~l~~ 187 (414)
||+|.|.+|+||||+|+.+..... +.... ..... ... ....-... ..........+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999999883 12222 11111 111 11111111 111111245677788888887
Q ss_pred HhCCCcEEE
Q 043070 188 RLGQRRFAL 196 (414)
Q Consensus 188 ~L~~kr~Ll 196 (414)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 777766444
No 113
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.60 E-value=0.0038 Score=59.69 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 190 (414)
.-+++-|+|++|+||||||.+++... ...-..++|+ ..+-...+.+++...+. ....+.++....+...++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999987665 2223455566 22333455555543221 123345666666665554
Q ss_pred -CCcEEEEEecCCC
Q 043070 191 -QRRFALLLDDLRE 203 (414)
Q Consensus 191 -~kr~LlVlDdv~~ 203 (414)
+.--|||+|.|-.
T Consensus 131 s~~~~lIVIDSvaa 144 (325)
T cd00983 131 SGAVDLIVVDSVAA 144 (325)
T ss_pred ccCCCEEEEcchHh
Confidence 4677899998753
No 114
>PRK08233 hypothetical protein; Provisional
Probab=96.60 E-value=0.002 Score=56.41 Aligned_cols=25 Identities=44% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|.|.+|+||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 115
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.003 Score=65.05 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=38.3
Q ss_pred CCccchH-HHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+-.|.+ -+++|++.|. .-+-+++++||++|+|||+|++.+++..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 4567999 9999999982 1334799999999999999999999988
No 116
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.59 E-value=0.0061 Score=58.14 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=53.3
Q ss_pred chH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccC
Q 043070 102 DVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWD 174 (414)
Q Consensus 102 Gr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~ 174 (414)
++. ......+++.+ ...+-+.|+|..|+|||.||.++++... ...+.+ .++ ..++..+-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v-~~~~~~~l~~~lk~~~~~~----- 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSS-TLLHFPEFIRELKNSISDG----- 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCE-EEEEHHHHHHHHHHHHhcC-----
Confidence 455 55555666643 2456799999999999999999999982 223332 233 55666665554321
Q ss_pred cCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 175 DKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 175 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
+.... + +.++ +-=||||||+-.
T Consensus 207 --~~~~~---l-~~l~-~~dlLiIDDiG~ 228 (306)
T PRK08939 207 --SVKEK---I-DAVK-EAPVLMLDDIGA 228 (306)
T ss_pred --cHHHH---H-HHhc-CCCEEEEecCCC
Confidence 12222 2 2233 567899999854
No 117
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.024 Score=59.00 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCccchH-HHHHHHHHhh---------c---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE---------D---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~---------~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i 162 (414)
+++-|.+ -+.+|.+-+. . .+.+-|.++|++|.|||-||++|+-.. .=.|= -| -+++..-
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL~Fl---SVKGPELLNMY 745 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SLNFL---SVKGPELLNMY 745 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---eeeEE---eecCHHHHHHH
Confidence 4566888 8888888762 1 235678899999999999999999887 33330 00 1111111
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCc
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
-..+++.+.+...+.=.-++|.|.+|.+++.
T Consensus 746 -----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 746 -----------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -----------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2233444444444444568999999988664
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.0043 Score=62.37 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
..-+.|+|..|+|||+|++.+++... .....++++ ..+...+...+... . .+.+++.+. +.-+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~~~f~~~~~~~l~~~-------~----~~~f~~~~~-~~dv 205 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRSELFTEHLVSAIRSG-------E----MQRFRQFYR-NVDA 205 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeHHHHHHHHHHHHhcc-------h----HHHHHHHcc-cCCE
Confidence 35688999999999999999999872 122223444 55555555555321 1 123444443 3458
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|++||+...
T Consensus 206 LiIDDiq~l 214 (445)
T PRK12422 206 LFIEDIEVF 214 (445)
T ss_pred EEEcchhhh
Confidence 888998654
No 119
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.56 E-value=0.0077 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+||||||.+++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 120
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.55 E-value=0.0024 Score=57.43 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+|+|+|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 121
>PTZ00301 uridine kinase; Provisional
Probab=96.55 E-value=0.0024 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+|+|.|.+|+||||||+.+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 35799999999999999999998766
No 122
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0021 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|.|.||+|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999988
No 123
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.54 E-value=0.01 Score=59.21 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|.+|+||||+|..++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 124
>PRK14527 adenylate kinase; Provisional
Probab=96.54 E-value=0.012 Score=52.12 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
...+|.|+|++|+||||+|+.+.+.+. -.++...-++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHH
Confidence 457899999999999999999998773 3444443333
No 125
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.53 E-value=0.0065 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999887
No 126
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.53 E-value=0.0045 Score=52.63 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|-|+|.+|+||||||+.+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 127
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.52 E-value=0.0033 Score=62.73 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=34.7
Q ss_pred ccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 100 TVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.+ .+++|.+.+.- ...+-+.++|++|+|||++|+.+++..
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45888 88888877621 234678899999999999999999987
No 128
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.52 E-value=0.0023 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999776
No 129
>PRK09354 recA recombinase A; Provisional
Probab=96.52 E-value=0.0047 Score=59.58 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 190 (414)
.-+++-|+|++|+||||||.++.... ...-...+|| ..+-...+++++...+. ....+.++....+...++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45799999999999999999987766 2233455677 33333455666543221 123345666666666554
Q ss_pred -CCcEEEEEecCCCc
Q 043070 191 -QRRFALLLDDLREP 204 (414)
Q Consensus 191 -~kr~LlVlDdv~~~ 204 (414)
++--|||+|-|-..
T Consensus 136 s~~~~lIVIDSvaaL 150 (349)
T PRK09354 136 SGAVDLIVVDSVAAL 150 (349)
T ss_pred cCCCCEEEEeChhhh
Confidence 46778999987543
No 130
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.51 E-value=0.0021 Score=57.27 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
+-...++.|. ...++.+.|++|.|||.||.+.+-+. -....|+..+++
T Consensus 8 ~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~ 55 (205)
T PF02562_consen 8 EQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIIT 55 (205)
T ss_dssp HHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEE
T ss_pred HHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEE
Confidence 4555666666 45699999999999999999988766 335777777766
No 131
>PRK06762 hypothetical protein; Provisional
Probab=96.49 E-value=0.0026 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.49 E-value=0.0051 Score=61.30 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRF 194 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 194 (414)
...+.|+|..|+|||+|++.+++... +... ..++++ ..+...+...+... ..+ .+.+.+.+ .-
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~-~d 201 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVSSEKFTNDFVNALRNN-------KME----EFKEKYRS-VD 201 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEEHHHHHHHHHHHHHcC-------CHH----HHHHHHHh-CC
Confidence 35689999999999999999999872 1111 123344 55566666555421 122 23333333 34
Q ss_pred EEEEecCCCc
Q 043070 195 ALLLDDLREP 204 (414)
Q Consensus 195 LlVlDdv~~~ 204 (414)
+|||||+...
T Consensus 202 lLiiDDi~~l 211 (405)
T TIGR00362 202 LLLIDDIQFL 211 (405)
T ss_pred EEEEehhhhh
Confidence 8899999754
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.49 E-value=0.02 Score=59.17 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC--cchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCc
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF--GLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRR 193 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F--~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr 193 (414)
...+.|+|..|+|||.|++.+++... ..+ ..++++ ..+..++...+... .. +.+++.+.+ -
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~---~~~~g~~V~Yitaeef~~el~~al~~~-------~~----~~f~~~y~~-~ 378 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR---RLYPGTRVRYVSSEEFTNEFINSIRDG-------KG----DSFRRRYRE-M 378 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHHHHHHHHHHHHHhc-------cH----HHHHHHhhc-C
Confidence 34689999999999999999999872 221 223444 55565655554321 11 223333433 3
Q ss_pred EEEEEecCCCc
Q 043070 194 FALLLDDLREP 204 (414)
Q Consensus 194 ~LlVlDdv~~~ 204 (414)
=+|||||+...
T Consensus 379 DLLlIDDIq~l 389 (617)
T PRK14086 379 DILLVDDIQFL 389 (617)
T ss_pred CEEEEehhccc
Confidence 57888999755
No 134
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.45 E-value=0.0028 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998873
No 135
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.011 Score=50.87 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhH--------------------HHHHHHHHHHhcCCCCc-cCcC
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILV--------------------KRIQHVMGYRLAMSNEV-WDDK 176 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv--------------------~~l~~~i~~~l~~~~~~-~~~~ 176 (414)
+-|.++||.|+||||+.+.+++.. .-.| |.=-++ +++-..++..+....+. ....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L---~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTG 79 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL---NLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATG 79 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc---CCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECC
Confidence 357899999999999999999887 3344 544444 44444455554333211 0111
Q ss_pred CHhHHHHHHHHHhCCCcEEEEEe
Q 043070 177 TKQGRAIDSSRRLGQRRFALLLD 199 (414)
Q Consensus 177 ~~~~~~~~l~~~L~~kr~LlVlD 199 (414)
.-.-+.+.-+++|+++-..|.||
T Consensus 80 GG~v~~~enr~~l~~~g~vv~L~ 102 (172)
T COG0703 80 GGAVLSEENRNLLKKRGIVVYLD 102 (172)
T ss_pred CccccCHHHHHHHHhCCeEEEEe
Confidence 11222345566777766666665
No 136
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.45 E-value=0.0054 Score=62.00 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC--cchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCc
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF--GLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRR 193 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F--~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr 193 (414)
..-+.|+|.+|+|||+|++.+++... ..+ ..++++ ..+...+...+... .. ..+.+.++ +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~v~yi~~~~~~~~~~~~~~~~-------~~----~~~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL---EKNPNAKVVYVTSEKFTNDFVNALRNN-------TM----EEFKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEEEHHHHHHHHHHHHHcC-------cH----HHHHHHHh-cC
Confidence 45689999999999999999999872 222 123344 55555565555321 12 23333444 34
Q ss_pred EEEEEecCCCc
Q 043070 194 FALLLDDLREP 204 (414)
Q Consensus 194 ~LlVlDdv~~~ 204 (414)
-+|||||+...
T Consensus 213 dlLiiDDi~~l 223 (450)
T PRK00149 213 DVLLIDDIQFL 223 (450)
T ss_pred CEEEEehhhhh
Confidence 58999999653
No 137
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.43 E-value=0.011 Score=59.00 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++.++|.+|+||||.|..++...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999988887664
No 138
>CHL00176 ftsH cell division protein; Validated
Probab=96.42 E-value=0.011 Score=62.02 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=53.3
Q ss_pred CCccchH-HHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLV---ED---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVMG 163 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i~ 163 (414)
.+++|.+ .++++.+.+ .. ...+-+.++|++|+|||+||+.+++.. ...| .... ..+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~--s~f~~--- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISG--SEFVE--- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccH--HHHHH---
Confidence 5577887 555555543 22 124568999999999999999999876 2232 1100 11111
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCc
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
.. .......+...+.....+.+++|+|||++..
T Consensus 255 -~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 255 -MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred -Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 00 0111122333444455678899999999643
No 139
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.41 E-value=0.0039 Score=63.41 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCccchH-HHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .+++|++.|. +..-+++.++|++|+||||||+.+.+-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 3578999 9999999982 2456799999999999999999998876
No 140
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.41 E-value=0.0032 Score=56.55 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...+|+|+|.+|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 141
>PRK06921 hypothetical protein; Provisional
Probab=96.40 E-value=0.0087 Score=55.95 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+.++|..|+|||.||..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 142
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.40 E-value=0.004 Score=59.76 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=39.5
Q ss_pred cCCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|.+ ..+.+.+++..+.. .++.++|.+|+||||+|+.+++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 346789999 99999999976554 567779999999999999998876
No 143
>PRK03839 putative kinase; Provisional
Probab=96.39 E-value=0.003 Score=55.35 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 144
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0048 Score=62.40 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=39.1
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+++||.+ ....|.+.+.++.+ ..+.++|++|+||||+|+.+++..
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 88888888877665 468899999999999999998876
No 145
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0096 Score=55.86 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcC--CCCcchHhH----HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCC
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTR--HNFGLVILV----KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQ 191 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~--~~F~~~~wv----~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 191 (414)
-++|.++|++|.|||+|++++++.. .++ +.+....-+ ..+..+.... .......+.++|.+.+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinshsLFSKWFsE--------SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSHSLFSKWFSE--------SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehhHHHHHHHhh--------hhhHHHHHHHHHHHHHhC
Confidence 4789999999999999999999988 443 223222222 3444433332 234456777788888877
Q ss_pred CcEE--EEEecCC
Q 043070 192 RRFA--LLLDDLR 202 (414)
Q Consensus 192 kr~L--lVlDdv~ 202 (414)
+..| +.+|.|.
T Consensus 248 ~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 248 RGNLVFVLIDEVE 260 (423)
T ss_pred CCcEEEEEeHHHH
Confidence 6544 4467663
No 146
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.37 E-value=0.0033 Score=55.24 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998766
No 147
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.36 E-value=0.0033 Score=55.02 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcE
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRF 194 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 194 (414)
...-+.++|..|+|||.||..+.+..- ...+ .+.|+ .+++..+-.. . .....+... +.+. +-=
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~~~~L~~~l~~~----~---~~~~~~~~~----~~l~-~~d 110 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFITASDLLDELKQS----R---SDGSYEELL----KRLK-RVD 110 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEHHHHHHHHHCC----H---CCTTHCHHH----HHHH-TSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEeecCceecccccc----c---cccchhhhc----Cccc-ccc
Confidence 346799999999999999999998772 2222 23344 5555555322 1 112222322 2333 346
Q ss_pred EEEEecCCCc
Q 043070 195 ALLLDDLREP 204 (414)
Q Consensus 195 LlVlDdv~~~ 204 (414)
||||||+-..
T Consensus 111 lLilDDlG~~ 120 (178)
T PF01695_consen 111 LLILDDLGYE 120 (178)
T ss_dssp CEEEETCTSS
T ss_pred Eeccccccee
Confidence 7889998643
No 148
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.0061 Score=62.85 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhC------
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLG------ 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~------ 190 (414)
.-++..++|++|+||||||+-++++.. |.. +..+. .+.-+...+.++|...++
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsV--------------vEINA--SDeRt~~~v~~kI~~avq~~s~l~ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSV--------------VEINA--SDERTAPMVKEKIENAVQNHSVLD 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceE--------------EEecc--cccccHHHHHHHHHHHHhhccccc
Confidence 457899999999999999999998761 000 01111 123334455555555544
Q ss_pred --CCcEEEEEecCCCcc
Q 043070 191 --QRRFALLLDDLREPI 205 (414)
Q Consensus 191 --~kr~LlVlDdv~~~~ 205 (414)
+++..||+|.++-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 356669999998764
No 149
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.35 E-value=0.015 Score=54.61 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----HHHHHHHHHHhcCCCCc-----cCcCC
Q 043070 107 NEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----KRIQHVMGYRLAMSNEV-----WDDKT 177 (414)
Q Consensus 107 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----~~l~~~i~~~l~~~~~~-----~~~~~ 177 (414)
++..+++...+..+|.|+|.+|+|||||...+.+.. .......+.. ...=...+...+.+.-. .-..+
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL---KDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh---ccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCc
Confidence 445555666788999999999999999999999886 3333222222 11112233333322110 01123
Q ss_pred HhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 178 KQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 178 ~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
...+...+.......--+||++++-+
T Consensus 170 a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 33444455554444456788899865
No 150
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0098 Score=59.29 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=56.4
Q ss_pred CccchH----HHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHH
Q 043070 99 NTVDVS----RLNEVWRLVEDN---------SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYR 165 (414)
Q Consensus 99 ~~vGr~----~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~ 165 (414)
++-|-| ++++|++.|.++ =++-|.++|++|.|||-||++++-.. .| ..|.+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~V-PFF~~-------------- 368 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GV-PFFYA-------------- 368 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CC-CeEec--------------
Confidence 344655 788888888552 25689999999999999999999877 33 22211
Q ss_pred hcCCCCccCcCCHhHHHHHHHHHh----CCCcEEEEEecCCCc
Q 043070 166 LAMSNEVWDDKTKQGRAIDSSRRL----GQRRFALLLDDLREP 204 (414)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~~ 204 (414)
....++..=......++++.+ +.-+|.|.+|.++..
T Consensus 369 ---sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 369 ---SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ---cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 011112222334445555555 345899999998754
No 151
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.018 Score=58.38 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF 149 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F 149 (414)
...-|.++|++|.|||-||++|+|.. +-+|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF 573 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF 573 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce
Confidence 45678999999999999999999988 6666
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.31 E-value=0.0061 Score=56.87 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=32.3
Q ss_pred CCccchH-HHHHHHHH---hh------------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRL---VE------------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~---L~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .+++|.+. +. .+...-+.++|++|+||||+|+.+++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478888 66555443 21 0234567899999999999999998865
No 153
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.31 E-value=0.0067 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 154
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0064 Score=59.66 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=39.5
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+.+..+++ ..+.++|+.|+||||+|+.+++..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999876554 467899999999999999999876
No 155
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.28 E-value=0.011 Score=54.35 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
..-.++.|.|.+|+|||+||.++.... -..-..++||
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyv 55 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYV 55 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 345799999999999999999876554 1223455555
No 156
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.27 E-value=0.0071 Score=55.24 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998876
No 157
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.24 E-value=0.015 Score=54.97 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|++|+||||++..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999988766
No 158
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.0037 Score=55.81 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-HHHHHHHHHHh-c-CCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-KRIQHVMGYRL-A-MSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-~~l~~~i~~~l-~-~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
.+|.|+|+.|+||||++..+.+.. .......++. ++-.+-..... . ..... ...+.....+.++..|....=+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~-vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIEFVHESKRSLINQRE-VGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCccccccCccceeeecc-cCCCccCHHHHHHHHhcCCcCE
Confidence 378999999999999999887766 2233333333 11000000000 0 00000 1112334566778888777889
Q ss_pred EEEecCCCccchh
Q 043070 196 LLLDDLREPIDLK 208 (414)
Q Consensus 196 lVlDdv~~~~~~~ 208 (414)
+++|.+.+.+...
T Consensus 78 ii~gEird~e~~~ 90 (198)
T cd01131 78 ILVGEMRDLETIR 90 (198)
T ss_pred EEEcCCCCHHHHH
Confidence 9999998766443
No 159
>PRK04296 thymidine kinase; Provisional
Probab=96.24 E-value=0.0033 Score=55.71 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
.++.|+|..|.||||+|...+.+.. .+-..++.+ ......++.+++............++...+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 4778999999999999999888772 111111111 12233455666543321112344555555555 3345
Q ss_pred cEEEEEecCC
Q 043070 193 RFALLLDDLR 202 (414)
Q Consensus 193 r~LlVlDdv~ 202 (414)
.-+||+|.+.
T Consensus 79 ~dvviIDEaq 88 (190)
T PRK04296 79 IDCVLIDEAQ 88 (190)
T ss_pred CCEEEEEccc
Confidence 5689999984
No 160
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.24 E-value=0.008 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 161
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.24 E-value=0.08 Score=54.71 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=100.3
Q ss_pred CCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhhhhc--CCCCcchHhH----------HHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKFNDT--RHNFGLVILV----------KRIQ 159 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v--~~~F~~~~wv----------~~l~ 159 (414)
..+-+|| +..+|-..+.. ..-..+-|.|.+|+|||..+..|.+....- +..-....+| .++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4456899 99999888732 234488999999999999999999866211 1111111222 8899
Q ss_pred HHHHHHhcCCCCccCcCCHhHHHHHHHHHhC-----CCcEEEEEecCCCcc-----chhhh-ccCCCCCCcHh-------
Q 043070 160 HVMGYRLAMSNEVWDDKTKQGRAIDSSRRLG-----QRRFALLLDDLREPI-----DLKTA-GASIQNGSKVK------- 221 (414)
Q Consensus 160 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~-----~~~~~-~~p~~~gs~ii------- 221 (414)
..|...+.+.. .......+.|..++. .+.++|++|+++..- .+..| -+|..++|+++
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999997754 233344555555554 357888888886542 23333 55677788877
Q ss_pred --hHHHHHHHhh----cCCcCCC-CchHHHHHHHHHHHhCCc----hhHHHHHHHHhcC
Q 043070 222 --YAWNLFQLKV----TDDVLNS-HRDIRKHAETVAGLCGGL----PLSLITTGSAMTS 269 (414)
Q Consensus 222 --~a~~Lf~~~a----~~~~~~~-~~~l~~~~~~I~~~c~Gl----PLai~~~g~~L~~ 269 (414)
--.++|..+. +...... +-.-.++-.-|..++.|+ +-|+..++...+.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAA 609 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHh
Confidence 2333443222 2111111 112233334444566666 5677777776655
No 162
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.23 E-value=0.011 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|+|.+|+|||+||.+++-..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 45799999999999999999997543
No 163
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.23 E-value=0.0052 Score=57.48 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999877
No 164
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.011 Score=63.60 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=35.7
Q ss_pred CccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.|.+ .++++.+.+.- ...+-+.++|.+|+|||+||+.+++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 467998 88888887621 234678899999999999999999877
No 165
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.081 Score=48.26 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRR 188 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 188 (414)
.+..++.++|.-|+|||++.+....... .+. -+.+.+ ..+...|...+..........-.++....|...
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~d~-~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--EDQ-VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--CCc-eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 4557999999999999999995554441 111 111222 778888888887733211112233444444444
Q ss_pred h-CCCc-EEEEEecCCCc
Q 043070 189 L-GQRR-FALLLDDLREP 204 (414)
Q Consensus 189 L-~~kr-~LlVlDdv~~~ 204 (414)
. +++| ..++.|+..+.
T Consensus 126 ~~~g~r~v~l~vdEah~L 143 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDL 143 (269)
T ss_pred HHhCCCCeEEeehhHhhh
Confidence 4 4677 89999998655
No 166
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.19 E-value=0.0056 Score=56.69 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999877
No 167
>PRK04040 adenylate kinase; Provisional
Probab=96.18 E-value=0.0048 Score=54.52 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcC
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAM 168 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~ 168 (414)
..+|+|+|++|+||||+++.+.+.. ...+.. +-...+...++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l---~~~~~~-~~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL---KEDYKI-VNFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh---ccCCeE-EecchHHHHHHHHcCC
Confidence 3689999999999999999998887 112211 1114555555555554
No 168
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.008 Score=57.86 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
..-+.++|..|+|||.||..+++... ...+ .++++ ..+...+...-. . ...+.... .+.+. .-=|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~-~V~y~t~~~l~~~l~~~~~-~----~~~~~~~~----~~~l~-~~DL 249 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRGK-SVIYRTADELIEILREIRF-N----NDKELEEV----YDLLI-NCDL 249 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCCC-eEEEEEHHHHHHHHHHHHh-c----cchhHHHH----HHHhc-cCCE
Confidence 37799999999999999999999872 2222 33444 555554433211 1 11111111 23333 2358
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|||||+-..
T Consensus 250 LIIDDlG~e 258 (329)
T PRK06835 250 LIIDDLGTE 258 (329)
T ss_pred EEEeccCCC
Confidence 999999543
No 169
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.16 E-value=0.0078 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 170
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.0077 Score=59.81 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ -++.|.+++.++.+. .+.++|+.|+||||+|..+++..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 889999999876654 58899999999999999999877
No 171
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.13 E-value=0.0055 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 172
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.13 E-value=0.017 Score=62.44 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCccchH-HHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.|.+++.. .+..++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467888 88888887631 234589999999999999999999987
No 173
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0069 Score=62.36 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=41.1
Q ss_pred CCccchH-HHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 043070 98 ENTVDVS-RLNEVWRLVE------DNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF 149 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F 149 (414)
++-.|.+ -+++|++.|. +-+-++++.+|++|+|||++|+.++.... ++.|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE
Confidence 5567999 9999999882 24568999999999999999999999884 4444
No 174
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.12 E-value=0.011 Score=58.01 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHH---HHHHHHHhcCCCCcc---CcCCHhHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRI---QHVMGYRLAMSNEVW---DDKTKQGRAIDSSRR 188 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l---~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 188 (414)
.-.++.|.|.+|+|||||+.+++.... ..-..++|+ ++- ...-+..++...+.. ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~-- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE-- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH--
Confidence 346999999999999999999987762 222345555 111 122234455432211 2233444444432
Q ss_pred hCCCcEEEEEecCCC
Q 043070 189 LGQRRFALLLDDLRE 203 (414)
Q Consensus 189 L~~kr~LlVlDdv~~ 203 (414)
..+.-+||+|.+..
T Consensus 156 -~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 -ELKPDLVIIDSIQT 169 (372)
T ss_pred -hcCCcEEEEcchHH
Confidence 23667889988643
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.014 Score=61.62 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHH-HHHHHHhcCCCCcc
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQ-HVMGYRLAMSNEVW 173 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~-~~i~~~l~~~~~~~ 173 (414)
.+++||+ ++.++++.|....-.--.++|.+|+|||+++.-++.+.- .+.-+. ++ .+++ -++..-..+..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~--~L~~~~i~sLD~g~LvAGak--- 242 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPE--SLKDKRIYSLDLGSLVAGAK--- 242 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCH--HHcCCEEEEecHHHHhcccc---
Confidence 6689999 999999999653333445789999999999988888761 222111 11 0110 11111111111
Q ss_pred CcCCHhHHHHHHHHHhC-CCcEEEEEecCCC
Q 043070 174 DDKTKQGRAIDSSRRLG-QRRFALLLDDLRE 203 (414)
Q Consensus 174 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 203 (414)
-..+.++....+.+.++ .++..|++|.+-.
T Consensus 243 yRGeFEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 23455666666666664 3589999998754
No 176
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.41 Score=49.37 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcch-------HhH---HHHHHHHHHHhc
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLV-------ILV---KRIQHVMGYRLA 167 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~-------~wv---~~l~~~i~~~l~ 167 (414)
...+-|..+|++|.|||++|+.+++.. .-.|=.+ -|| ++.++++.++..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSKYVGESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHHhcCchHHHHHHHHHHHh
Confidence 467889999999999999999999988 6777433 366 777777766653
No 177
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.098 Score=54.82 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+++..+.+. .+.++|..|+||||+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999 999999999876654 57899999999999999988866
No 178
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0053 Score=51.85 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCC
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMS 169 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~ 169 (414)
+|+|-|++|+||||+|+.++++.. . .+... ..+.++|++..|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l-~~vsa----G~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-L-KLVSA----GTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-C-ceeec----cHHHHHHHHHcCCC
Confidence 789999999999999999999882 1 11111 35667777776654
No 179
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.03 E-value=0.02 Score=49.64 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
..|.|+|+.|+||||+|+.+.+... ...|+.-.|+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG--YRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEccHHH
Confidence 3588999999999999999998872 2344554444
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.038 Score=54.34 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc--chHhH--HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG--LVILV--KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~--~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
....+-|+|..|.|||.|++++.+.. ..+.. .++.+ ......++..+... -.+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~se~f~~~~v~a~~~~-----------~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTSEDFTNDFVKALRDN-----------EMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccHHHHHHHHHHHHHhh-----------hHHHHHHhh--c
Confidence 47899999999999999999999988 23332 23344 44444444444321 122344444 3
Q ss_pred cEEEEEecCCC
Q 043070 193 RFALLLDDLRE 203 (414)
Q Consensus 193 r~LlVlDdv~~ 203 (414)
-=++++||++-
T Consensus 176 ~dlllIDDiq~ 186 (408)
T COG0593 176 LDLLLIDDIQF 186 (408)
T ss_pred cCeeeechHhH
Confidence 34666777754
No 181
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.00 E-value=0.0056 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|+|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 182
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.016 Score=56.56 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRR 188 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 188 (414)
..+++++|+.|+||||++.++.... ..+.....+..+ .+-++...+.++.+.. ...+..++...+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHH-H
Confidence 5699999999999999999998876 111111222333 3345555556665432 2222333333333 3
Q ss_pred hCCCcEEEEEecCC
Q 043070 189 LGQRRFALLLDDLR 202 (414)
Q Consensus 189 L~~kr~LlVlDdv~ 202 (414)
+.++ -+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4555 455688774
No 183
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.97 E-value=0.02 Score=52.74 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC--CCcchHhH-------HHHHHHHHHHhcCCCC-----ccCcCCHhHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRH--NFGLVILV-------KRIQHVMGYRLAMSNE-----VWDDKTKQGR 181 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~--~F~~~~wv-------~~l~~~i~~~l~~~~~-----~~~~~~~~~~ 181 (414)
.+-.+++|||..|.|||||++.+..-..-..+ .|++.-.. .+-..+++...+.... ..+-+.-+.-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 34578999999999999999999987621111 24333211 3345556666554331 1111222222
Q ss_pred HHHHHHHhCCCcEEEEEecCCCcc
Q 043070 182 AIDSSRRLGQRRFALLLDDLREPI 205 (414)
Q Consensus 182 ~~~l~~~L~~kr~LlVlDdv~~~~ 205 (414)
.-.+.+.|.-+.-|+|.|..-+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhc
Confidence 234677888899999999865543
No 184
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.95 E-value=0.0082 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 185
>PRK06217 hypothetical protein; Validated
Probab=95.94 E-value=0.0061 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|.|.|.+|+||||||+.+....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 186
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.94 E-value=0.02 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|.|+|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 187
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.94 E-value=0.0055 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987754
No 188
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.93 E-value=0.015 Score=47.26 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=35.7
Q ss_pred CCccchH-HHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|-. ..+.+++.|.+ .++-|++.+|.+|+|||-+++.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567777 77777777632 457799999999999999999998874
No 189
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.93 E-value=0.0068 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 190
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.01 Score=60.91 Aligned_cols=45 Identities=27% Similarity=0.280 Sum_probs=38.7
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||-+ .++.|.+.+..+.+ ..+.++|+.|+||||+|+.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999 99999999977554 457899999999999999999866
No 191
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.91 E-value=0.016 Score=47.92 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..++-+.|.. ..-.+|.+.|.-|+|||||++.+.+..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555543 344699999999999999999999886
No 192
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.90 E-value=0.0062 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.90 E-value=0.006 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 194
>PRK13947 shikimate kinase; Provisional
Probab=95.88 E-value=0.0077 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 195
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.86 E-value=0.024 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|+++|++|+||||++..++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999988776
No 196
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.86 E-value=0.022 Score=48.30 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=40.2
Q ss_pred EEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCC--Cc
Q 043070 123 LHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQ--RR 193 (414)
Q Consensus 123 I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~--kr 193 (414)
|+|++|+||||+|+.++..+. -.++...-.+ ..+-..|-..+... ...+.+-+.+.+...|.. ..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g----~~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNG----ELVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTT----SS--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhh----ccchHHHHHHHHHHHHhhhccc
Confidence 689999999999999999882 1233332222 11112222222211 223344555666666643 24
Q ss_pred EEEEEecCCC
Q 043070 194 FALLLDDLRE 203 (414)
Q Consensus 194 ~LlVlDdv~~ 203 (414)
.-.|||+.-.
T Consensus 75 ~g~ildGfPr 84 (151)
T PF00406_consen 75 RGFILDGFPR 84 (151)
T ss_dssp TEEEEESB-S
T ss_pred ceeeeeeccc
Confidence 5577888643
No 197
>PRK14974 cell division protein FtsY; Provisional
Probab=95.85 E-value=0.05 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+|.++|++|+||||++..++...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36799999999999999888888766
No 198
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.84 E-value=0.0094 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998876
No 199
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.84 E-value=0.025 Score=51.80 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|+|.+|+|||+||.++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45799999999999999999986544
No 200
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.0079 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999998
No 201
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.83 E-value=0.019 Score=52.69 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+.++........+.|+|+.|+|||+|++.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55555555555555789999999999999999999876
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.82 E-value=0.015 Score=55.54 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred chH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHH
Q 043070 102 DVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLN 139 (414)
Q Consensus 102 Gr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~ 139 (414)
+|. +-.--+++|.++.+..|++.|.+|.|||-||.+..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 455 66666778888999999999999999999987653
No 203
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.81 E-value=0.019 Score=58.20 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCccchH-HHHHHHHHh---hc-------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLV---ED-------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ -++.+.+.. .. ...+-|.++|++|.|||.+|+.+++..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3456777 555554422 11 345678999999999999999999987
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.024 Score=55.72 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhH---------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILV---------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSS 186 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv---------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 186 (414)
...+|.++|..|+||||.+..++.........- ..+..+ ..-++...+.++.+.. ...+.+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999998887662110011 112222 2225555666665432 3334455555454
Q ss_pred HHhCCCcEEEEEecCC
Q 043070 187 RRLGQRRFALLLDDLR 202 (414)
Q Consensus 187 ~~L~~kr~LlVlDdv~ 202 (414)
+. .+.-++++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 43 345678888763
No 205
>PRK04328 hypothetical protein; Provisional
Probab=95.81 E-value=0.026 Score=52.31 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+|||+||.++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999876554
No 206
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.012 Score=61.12 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=39.6
Q ss_pred CCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||.+ ..+.|.+++..++ ...+.++|+.|+||||+|+.+++..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 9999999997765 4577999999999999999999876
No 207
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.80 E-value=0.035 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++-|+|.+|+|||+||.+++-..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 45789999999999999999998664
No 208
>PRK14530 adenylate kinase; Provisional
Probab=95.78 E-value=0.0086 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999877
No 209
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.76 E-value=0.02 Score=52.14 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCcc-chH--HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTV-DVS--RLNEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~v-Gr~--~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+ |.. .+..+.++... .....+.|+|..|+|||+||+.+++..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 544 44555555442 345678999999999999999999876
No 210
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.012 Score=59.49 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||-+ .++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 36789999 889998888776655 78999999999999999998754
No 211
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.76 E-value=0.0082 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|.+|+||||||..+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 212
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.75 E-value=0.0078 Score=50.89 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 213
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.75 E-value=0.012 Score=56.06 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L~ 190 (414)
.-+++-|+|..|+||||||..+.... ...-..++|| ..+-...+..+|...+.. .+.+.++..+.+...++
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lir 128 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIR 128 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhh
Confidence 34799999999999999999998876 2234556788 556677777777654321 33455666666666665
Q ss_pred C-CcEEEEEecCCCc
Q 043070 191 Q-RRFALLLDDLREP 204 (414)
Q Consensus 191 ~-kr~LlVlDdv~~~ 204 (414)
. .--++|+|-|-..
T Consensus 129 sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 129 SGAVDLVVVDSVAAL 143 (322)
T ss_dssp TTSESEEEEE-CTT-
T ss_pred cccccEEEEecCccc
Confidence 4 4568899988654
No 214
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.74 E-value=0.039 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 215
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.73 E-value=0.043 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999877
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.03 Score=54.77 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|+++|.+|+||||++..++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999999998766
No 217
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.70 E-value=0.011 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|+|..|+|||||++.+.+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999988
No 218
>PRK14528 adenylate kinase; Provisional
Probab=95.69 E-value=0.059 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|.|++|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998776
No 219
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.68 E-value=0.015 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|.|..|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998876554
No 220
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.68 E-value=0.05 Score=47.90 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 107 NEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 107 ~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+.+.+..+++ ..+.++|+.|+||||+|..+.+..
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346666766555 578999999999999999998876
No 221
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.68 E-value=0.0087 Score=47.63 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|-|+|.+|+|||+||+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776
No 222
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.67 E-value=0.0099 Score=50.34 Aligned_cols=33 Identities=33% Similarity=0.264 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
|.|+|++|+||||+|+.+..... -..|+.-.++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~--~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG--LPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC--CCEEEchHHH
Confidence 78999999999999999998772 2344554444
No 223
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.0085 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 043070 120 IICLHGVSRLGKTTLLYNLN 139 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~ 139 (414)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999988
No 224
>PRK13975 thymidylate kinase; Provisional
Probab=95.67 E-value=0.011 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|+|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 225
>PRK13949 shikimate kinase; Provisional
Probab=95.66 E-value=0.011 Score=51.38 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+-|.|+|++|+||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 226
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.64 E-value=0.015 Score=52.27 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=27.8
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 111 RLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 111 ~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+...++++|+++|..|+|||||...+.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566789999999999999999999998775
No 227
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.63 E-value=0.0091 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|+.|+||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.62 E-value=0.023 Score=51.22 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=39.0
Q ss_pred cccccCCCccchH-HHHHHHHHh----hcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 92 VEVQDMENTVDVS-RLNEVWRLV----EDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 92 ~~~~~~~~~vGr~-~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.+-..++|.| ..+.+++-- ......-|.+||.-|+||++|++++.+.+
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3334446688988 877777654 33455678899999999999999999988
No 229
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.61 E-value=0.04 Score=48.62 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999886
No 230
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.60 E-value=0.039 Score=50.29 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..+.|.|.+|+||||||..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH
Confidence 45799999999999999999876544
No 231
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.018 Score=56.54 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+.+.++.. +.+.++|++|+||||+|..+.+..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999977554 488899999999999999998876
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.60 E-value=0.021 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.|.|.+|+|||+||.++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999987765
No 233
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.60 E-value=0.023 Score=58.53 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999 99999888766555677899999999999999998753
No 234
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.015 Score=59.40 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+++||-+ -++.|.+++..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 999999999776554 57899999999999999999876
No 235
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.58 E-value=0.026 Score=56.55 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCc----cCcCCH-----
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEV----WDDKTK----- 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~----~~~~~~----- 178 (414)
.-..++|+|.+|+|||||+.++.+... +.+-+.++++ .++.+.+...-...... ..+.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999998873 2345666666 34444444321111100 011111
Q ss_pred -hHHHHHHHHHh---CCCcEEEEEecCCCc
Q 043070 179 -QGRAIDSSRRL---GQRRFALLLDDLREP 204 (414)
Q Consensus 179 -~~~~~~l~~~L---~~kr~LlVlDdv~~~ 204 (414)
-...-.+.+++ +++++||++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12233355555 389999999998554
No 236
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.57 E-value=0.012 Score=59.84 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhcCCC--CccCc--
Q 043070 108 EVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLAMSN--EVWDD-- 175 (414)
Q Consensus 108 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~~~~--~~~~~-- 175 (414)
.++++|.. ..-....|+|.+|+|||||++.+.+... ..+-++.++| +++ .++-+.+.... ..+..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEV-tdm~rsVkgeVVasT~D~p~ 481 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEV-TDMQRSVKGEVIASTFDRPP 481 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhH-HHHHHhccceEEEECCCCCH
Confidence 34444433 3446789999999999999999998762 2333444445 333 33444441110 00010
Q ss_pred ---CCHhHHHHHHHHHh--CCCcEEEEEecCCCc
Q 043070 176 ---KTKQGRAIDSSRRL--GQRRFALLLDDLREP 204 (414)
Q Consensus 176 ---~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 204 (414)
.....+.-.+.++| .++.+||++|++-..
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 01122233344555 679999999997543
No 237
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.56 E-value=0.012 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.++|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999877
No 238
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.013 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 239
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.52 E-value=0.018 Score=60.22 Aligned_cols=68 Identities=7% Similarity=0.148 Sum_probs=50.4
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhc
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLA 167 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~ 167 (414)
.-+.++|.+ .++.|...+... +.+.++|.+|+||||+|+.+.+... ..+|+..+|. ..+++.++..+|
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCCcchHHHHHHHHHhcC
Confidence 346688999 888777777654 4688999999999999999998763 3456777777 555555555443
No 240
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.52 E-value=0.014 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-..++|+|..|+|||||++.+.+..
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC
Confidence 344689999999999999999998654
No 241
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.50 E-value=0.05 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999887655
No 242
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.50 E-value=0.015 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|..|+|||||+..+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 243
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.026 Score=54.95 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=41.9
Q ss_pred ccccCCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 93 EVQDMENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 93 ~~~~~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+....++|-+ ..+.+...+.++.. ..+.|+|..|+||||+|..+.+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 344556789999 99999999977654 468999999999999999999877
No 244
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.45 E-value=0.012 Score=49.05 Aligned_cols=23 Identities=48% Similarity=0.707 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 245
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.44 E-value=0.01 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 246
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.43 E-value=0.015 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 247
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.43 E-value=0.06 Score=58.72 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=35.6
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+.+.+.. ....++.++|+.|+|||+||+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888 88888888732 112478899999999999999999765
No 248
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.43 E-value=0.048 Score=48.61 Aligned_cols=50 Identities=18% Similarity=0.050 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHHhcCCC
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYRLAMSN 170 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~l~~~~ 170 (414)
..+|+|+|+.|+||||+|+.+.+.- -.-++.-.-+ ...+..|....|...
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~G---~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i 58 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAELG---FPVIDADDVAREVVEPGGEALQEIAERFGLEI 58 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHcC---CeEEEccHHHHHHHhccchHHHHHHHHcCCcc
Confidence 3689999999999999999988731 1222222222 344457777777544
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.036 Score=56.23 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|.+|+||||++..++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998887765
No 250
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.41 E-value=0.043 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++++++|++|+||||++..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887665
No 251
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.40 E-value=0.051 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.|.+|+||||+|..+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998765
No 252
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.029 Score=52.47 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-------HHHHHHHHHH-h---cCCCCccCcCCHhHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-------KRIQHVMGYR-L---AMSNEVWDDKTKQGRAID 184 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-------~~l~~~i~~~-l---~~~~~~~~~~~~~~~~~~ 184 (414)
+.-.++=|+|+.|+||||+|.+++-.. ...-...+|+ ..-...++.. + -...+ ....+...+.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~-~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP-DTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC-CCHHHHHHHHHH
Confidence 345789999999999999999987666 2333366777 3333444444 2 11111 022223344444
Q ss_pred HHHHhCCCcEEEEEecCCC
Q 043070 185 SSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 185 l~~~L~~kr~LlVlDdv~~ 203 (414)
+......+--|+|+|.+-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 5554455577999998743
No 253
>CHL00181 cbbX CbbX; Provisional
Probab=95.38 E-value=0.024 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.++|.+|+||||+|+.+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999998865
No 254
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.021 Score=59.60 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||-+ .+..|.+.+.++.+ ..+.++|+.|+||||+|+.+++..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 99999999977655 458899999999999999999877
No 255
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.37 E-value=0.051 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-..++|+|+.|+|||||...+.--
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999888643
No 256
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.36 E-value=0.062 Score=57.85 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.+ .+++|.+.+.- ...+-+.++|++|+|||+||+.+++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4466888 77777666521 234568899999999999999999987
No 257
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.36 E-value=0.016 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|+|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999876
No 258
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.36 E-value=0.053 Score=59.04 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.4
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+.+.+.. ....++.++|+.|+|||.||+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999 88888888722 234578999999999999999988766
No 259
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.36 E-value=0.057 Score=58.03 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+.+.+.. ....++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4567888 88888887732 123468899999999999999999877
No 260
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.35 E-value=0.024 Score=56.87 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=36.5
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++||+ .++.+...+..+ .-|.|.|.+|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 4589999 888888887654 468899999999999999999876
No 261
>PRK13948 shikimate kinase; Provisional
Probab=95.35 E-value=0.019 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999887
No 262
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.33 E-value=0.032 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998776
No 263
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.33 E-value=0.071 Score=50.53 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-----chHhH-HHHHHHHHHHh
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-----LVILV-KRIQHVMGYRL 166 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-----~~~wv-~~l~~~i~~~l 166 (414)
..++|-. +..++-++|.. +...-+.|+|+.|+|||+|......+.....++|- +-+-. +-.++.|..++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 5688998 88888888843 55567889999999999999888777544566662 11111 33455565555
Q ss_pred cCCCC--ccCcCCHhHHHHHHHHHhCC------CcEEEEEecCCCc
Q 043070 167 AMSNE--VWDDKTKQGRAIDSSRRLGQ------RRFALLLDDLREP 204 (414)
Q Consensus 167 ~~~~~--~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~ 204 (414)
..... .....+..+...+|-..|+. -++..|+|.++--
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf 149 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLF 149 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcc
Confidence 32211 11233344444555555542 3577888777543
No 264
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.049 Score=53.07 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSR 187 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 187 (414)
+.++++++|+.|+||||++..++... ..+. ..+.+| ..-++...+.++.+.. ...+..++.+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999988765 1121 223334 2233444444444321 23455666555543
Q ss_pred Hh-CCCcEEEEEecCC
Q 043070 188 RL-GQRRFALLLDDLR 202 (414)
Q Consensus 188 ~L-~~kr~LlVlDdv~ 202 (414)
.- .+..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 32 1345677778653
No 265
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.32 E-value=0.011 Score=48.39 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCc
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKFNDTRHNFG 150 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~~~v~~~F~ 150 (414)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5789999999999999999887 55663
No 266
>PRK04182 cytidylate kinase; Provisional
Probab=95.31 E-value=0.016 Score=50.44 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999877
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.064 Score=56.76 Aligned_cols=103 Identities=12% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhhh---hcCCCCcchHhHHHHHHHHH
Q 043070 97 MENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKFN---DTRHNFGLVILVKRIQHVMG 163 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~v~~~F~~~~wv~~l~~~i~ 163 (414)
...++|-+ .+..+.+.+.. ....+...+|+.|+|||-||+.++.... ..--.||..=+. -+.=+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~---EkHsV 566 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM---EKHSV 566 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH---HHHHH
Confidence 36688999 99999988832 3456778899999999999999987762 111123333222 22223
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhCCCcE-EEEEecCCCcc
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLGQRRF-ALLLDDLREPI 205 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~ 205 (414)
+.|-+.++.+-.-+. --.|-+.++.++| +|.||.+....
T Consensus 567 SrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 567 SRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred HHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcC
Confidence 334333333322222 1235556677877 77789998654
No 268
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.29 E-value=0.014 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998765
No 269
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.29 E-value=0.044 Score=55.23 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHH---HHHhcCCCCcc---CcCCHhHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVM---GYRLAMSNEVW---DDKTKQGRAIDSSRR 188 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i---~~~l~~~~~~~---~~~~~~~~~~~l~~~ 188 (414)
.-.++.|.|.+|+|||||+.+++.... ..-..++|+ ++-...+ ++.++...... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~-- 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE-- 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH--
Confidence 346999999999999999999988762 222344555 2222222 44454322111 2234444444443
Q ss_pred hCCCcEEEEEecCCC
Q 043070 189 LGQRRFALLLDDLRE 203 (414)
Q Consensus 189 L~~kr~LlVlDdv~~ 203 (414)
+.+.-+||+|.+..
T Consensus 154 -~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 -EEKPDLVVIDSIQT 167 (446)
T ss_pred -hhCCCEEEEechhh
Confidence 23566899998753
No 270
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.28 E-value=0.01 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+|||+||.++....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 45799999999999999999866444
No 271
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.28 E-value=0.027 Score=48.75 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=32.3
Q ss_pred ccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 100 TVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+||.. .+.++++.+.. ....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777 88888887743 333566799999999999999999976
No 272
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.28 E-value=0.064 Score=50.04 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=60.2
Q ss_pred CCccchH-HHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCC
Q 043070 98 ENTVDVS-RLNEVWRLVED-------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMS 169 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~ 169 (414)
..++|.- ..+.|+..+.+ .++-+++.+|..|+||.-.++.++++..+..-+ ..........+.-+
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~-------S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR-------SPFVHHFVATLHFP 154 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc-------chhHHHhhhhccCC
Confidence 3456766 66777777633 456799999999999999999998877321111 11122222333332
Q ss_pred CCccCcCCHhHHHHHHHHHhCC-----CcEEEEEecCCCcc
Q 043070 170 NEVWDDKTKQGRAIDSSRRLGQ-----RRFALLLDDLREPI 205 (414)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~L~~-----kr~LlVlDdv~~~~ 205 (414)
.....+.-..+|++++.+ +|-|.|+|+++...
T Consensus 155 ----~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 155 ----HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 233444445555555533 79999999998763
No 273
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.28 E-value=0.023 Score=59.10 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.|.+.+..+++. -+.++|+.|+||||+|+.+++..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999 999999999776544 68899999999999999999876
No 274
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.036 Score=50.68 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=34.9
Q ss_pred chH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 043070 102 DVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF 149 (414)
Q Consensus 102 Gr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F 149 (414)
|=. .++++.+.+.- +..+-|.++|++|.|||-+|++|+|+. ...|
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf 239 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF 239 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE
Confidence 444 77777766521 467789999999999999999999988 4555
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.24 E-value=0.016 Score=53.06 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++...|.++||+|+||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 345688899999999999999999887
No 276
>PRK13946 shikimate kinase; Provisional
Probab=95.23 E-value=0.019 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 277
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.22 E-value=0.018 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999877
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.22 E-value=0.065 Score=47.72 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-.|++|+|++|+|||||.+.+..-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4469999999999999999988653
No 279
>PLN02200 adenylate kinase family protein
Probab=95.22 E-value=0.02 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|++|+||||+|+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999877
No 280
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.21 E-value=0.018 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|.|.+|+|||||.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 281
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.066 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++++|..|+||||+...+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999998887653
No 282
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.21 E-value=0.036 Score=49.99 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.. ..-..++|.|.+|+|||+|+..+.+..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~ 39 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ 39 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc
Confidence 3455533 233678999999999999999999888
No 283
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.025 Score=58.23 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||-+ -++.+.+++..+++. .+.++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999 999999999876554 56899999999999999998876
No 284
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=0.033 Score=54.50 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=40.6
Q ss_pred ccCCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 95 QDMENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 95 ~~~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...+++|.+ ..+.+.+.+..+.+. .+.++|+.|+||||+|..+++..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3346789999 989999999876654 68999999999999999998876
No 285
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.19 E-value=0.026 Score=59.02 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=36.0
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++++|.+ .++.+...+.... -+.++|++|+||||+|+.+.+..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc
Confidence 346788999 7777777676543 55599999999999999999877
No 286
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.19 E-value=0.033 Score=53.80 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=37.2
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+.+||.+ .+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999 77777666666666678899999999999999998655
No 287
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.026 Score=59.03 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||-+ -++.|.+.+..+.+. .+.++|..|+||||+|+.+++..
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999 999999999776654 46899999999999999998876
No 288
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.18 E-value=0.045 Score=50.88 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----CcchHhH-------HHHHHHHHHHhcCCCCc-------cCcCCH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHN----FGLVILV-------KRIQHVMGYRLAMSNEV-------WDDKTK 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~----F~~~~wv-------~~l~~~i~~~l~~~~~~-------~~~~~~ 178 (414)
.-.+.=|+|.+|+|||+|+..++-.. ..... =..++|+ .+=+.+|++..+..... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCH
Confidence 34689999999999999998887554 11111 1346677 33344555554322110 012233
Q ss_pred hHHH---HHHHHHh-CCCcEEEEEecC
Q 043070 179 QGRA---IDSSRRL-GQRRFALLLDDL 201 (414)
Q Consensus 179 ~~~~---~~l~~~L-~~kr~LlVlDdv 201 (414)
+++. ..+...+ .++=-|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 3333334 345668999976
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.067 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 290
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.15 E-value=0.019 Score=49.50 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998876
No 291
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.056 Score=54.05 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHh----CC
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRL----GQ 191 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~ 191 (414)
..+..+.+.|++|+|||+||..++... .-.|-.++ ++......++......+++.+ +.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKii---------------Spe~miG~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS---DFPFVKII---------------SPEDMIGLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc---CCCeEEEe---------------ChHHccCccHHHHHHHHHHHHHHhhcC
Confidence 456778889999999999999998765 22221111 011113344455555666555 44
Q ss_pred CcEEEEEecCCCccchhhhccCCCCCC-cHhhHHHHHHHhh
Q 043070 192 RRFALLLDDLREPIDLKTAGASIQNGS-KVKYAWNLFQLKV 231 (414)
Q Consensus 192 kr~LlVlDdv~~~~~~~~~~~p~~~gs-~ii~a~~Lf~~~a 231 (414)
.--.||+||+...-+|-.++ ..=| .|+.++..|.+..
T Consensus 598 ~lsiivvDdiErLiD~vpIG---PRfSN~vlQaL~VllK~~ 635 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKQ 635 (744)
T ss_pred cceEEEEcchhhhhcccccC---chhhHHHHHHHHHHhccC
Confidence 66889999999888888772 1222 2336665555544
No 292
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.027 Score=58.35 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=39.8
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++||.+ .++.|.+++.++.+. .+.++|+.|+||||+|+.+++..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 999999999876655 47899999999999999999876
No 293
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.13 E-value=0.061 Score=58.79 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=36.8
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+.+.+.. ....++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999 99999888843 124578899999999999999999865
No 294
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.12 E-value=0.055 Score=54.58 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=51.2
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHH---HHHhcCCCCc---cC
Q 043070 105 RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVM---GYRLAMSNEV---WD 174 (414)
Q Consensus 105 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i---~~~l~~~~~~---~~ 174 (414)
-+..+-+.|.. ..-.++.|.|.+|+|||||+.++..... +. -..++|+ ++-..++ +..++...+. ..
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~-g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA--KN-QMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLS 155 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcC
Confidence 33444444532 3457999999999999999999977662 11 1234565 2222222 2234332211 12
Q ss_pred cCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 175 DKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 175 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
..+.+.+...+.+ .+.-++|+|.+..
T Consensus 156 e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 156 ETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred CCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 2344444444332 3566899998754
No 295
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.023 Score=48.36 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999998776654
No 296
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.09 E-value=0.023 Score=49.84 Aligned_cols=30 Identities=43% Similarity=0.552 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG 150 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~ 150 (414)
.++|.|+|+.|+|||||+..+.... ...|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccc
Confidence 4789999999999999999999887 45553
No 297
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.051 Score=52.83 Aligned_cols=92 Identities=15% Similarity=0.272 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHH---HHHHHhcCCCCcc---C
Q 043070 105 RLNEVWRLVEDN--SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQH---VMGYRLAMSNEVW---D 174 (414)
Q Consensus 105 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~---~i~~~l~~~~~~~---~ 174 (414)
...++-..|... .-.+|.|-|-+|+|||||..++..+.. ..- .+++| ++-.. --++.|+.+.+.. .
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEeh
Confidence 344444445431 346899999999999999999999883 222 67777 33333 3355666544321 3
Q ss_pred cCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 175 DKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 175 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
..+.+++.+.+.+ .+.-|+|+|-+..
T Consensus 154 Et~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 4556665555554 6889999998854
No 298
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.09 E-value=0.03 Score=54.41 Aligned_cols=88 Identities=16% Similarity=0.096 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
.-..|.|.|..|+||||+.+.+.+.. ......+++. .+....-...+-... . ...+.....+.++..|...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~tiEdp~E~~~~~~~~~i~q~-e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITIEDPIEYVHRNKRSLINQR-E-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEEcCChhhhccCccceEEcc-c-cCCCCcCHHHHHHHhhccC
Confidence 34789999999999999999988766 3344444444 111100000000000 0 1112234566788889999
Q ss_pred cEEEEEecCCCccchhh
Q 043070 193 RFALLLDDLREPIDLKT 209 (414)
Q Consensus 193 r~LlVlDdv~~~~~~~~ 209 (414)
.=.|++|.+.+.+.+..
T Consensus 196 pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 196 PDVILIGEMRDLETVEL 212 (343)
T ss_pred CCEEEEeCCCCHHHHHH
Confidence 99999999988775543
No 299
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.04 Score=47.41 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=25.8
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 113 VEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 113 L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..++..+|-+.|.+|+||||+|.+++...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 334566799999999999999999999887
No 300
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.05 Score=49.38 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=38.2
Q ss_pred ccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC
Q 043070 100 TVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF 149 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F 149 (414)
+-|.+ .++++.+.+. . +..+-|.++|++|.|||-||++|+|+. ...|
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe
Confidence 44788 8888888762 1 567889999999999999999999988 5666
No 301
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.06 E-value=0.018 Score=49.45 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhc
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLA 167 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~ 167 (414)
|+|+|..|+|||||++.+... +..||.+..+.++....
T Consensus 2 I~i~G~~stGKTTL~~~L~~~---------g~~~v~E~ar~~~~~~~ 39 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR---------GYPVVPEYAREIIEEGG 39 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH---------T-EEE--TTHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHc---------CCeEEeecHHHHHHHhc
Confidence 799999999999999999865 12244455555665554
No 302
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.05 E-value=0.03 Score=53.96 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.8
Q ss_pred ccCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 95 QDMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 95 ~~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+-+.++|.+ .++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3446789999 77777655543444568999999999999999997765
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.071 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++++|+.|+||||.+.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999998887665
No 304
>PRK14532 adenylate kinase; Provisional
Probab=95.04 E-value=0.019 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999877
No 305
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.04 Score=54.49 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=37.9
Q ss_pred CCccchH-HHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS----------VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|-+ -++.|.+++..+. ..-+.++|+.|+|||++|..+++..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4688999 8999999996642 4568899999999999999998865
No 306
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.01 E-value=0.023 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998876
No 307
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.069 Score=54.72 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=46.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEE
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFA 195 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 195 (414)
...+.+.++|++|.|||.||+++++.. ...|-.+-.- +++.. +-......+........+...+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~-----~l~sk-------~vGesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS-----ELLSK-------WVGESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH-----HHhcc-------ccchHHHHHHHHHHHHHcCCCcE
Confidence 345689999999999999999999976 4555221100 11111 12223334444445555678999
Q ss_pred EEEecCCCc
Q 043070 196 LLLDDLREP 204 (414)
Q Consensus 196 lVlDdv~~~ 204 (414)
|.+|.++..
T Consensus 339 iFiDEiDs~ 347 (494)
T COG0464 339 IFIDEIDSL 347 (494)
T ss_pred EEEEchhhh
Confidence 999998654
No 308
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.00 E-value=0.021 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|++|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 309
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.00 E-value=0.023 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 310
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.98 E-value=0.023 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLN 139 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~ 139 (414)
-..++|+|..|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 311
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.96 E-value=0.028 Score=54.45 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=40.3
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|-+.+||-+ .+..|...+.++.+.-|.|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 446789999 88888888877777778899999999999999998765
No 312
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.96 E-value=0.05 Score=50.38 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhc--------CCCCcchHhH-HHHHHHHHHHh----cCCCCccCcCCHhHHHHHHH
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDT--------RHNFGLVILV-KRIQHVMGYRL----AMSNEVWDDKTKQGRAIDSS 186 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v--------~~~F~~~~wv-~~l~~~i~~~l----~~~~~~~~~~~~~~~~~~l~ 186 (414)
+|+|.|.+|+||||+|+.+.+..... .+.|.. |- ...-+.+.... +...-.....+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr--~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR--YERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc--CCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999988766210 111111 11 12222222221 22221125667788888888
Q ss_pred HHhCCCc
Q 043070 187 RRLGQRR 193 (414)
Q Consensus 187 ~~L~~kr 193 (414)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8877653
No 313
>PRK14531 adenylate kinase; Provisional
Probab=94.96 E-value=0.024 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|+|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999887
No 314
>PRK14526 adenylate kinase; Provisional
Probab=94.95 E-value=0.072 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|++|+||||+|+.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998766
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.035 Score=57.35 Aligned_cols=71 Identities=24% Similarity=0.179 Sum_probs=43.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHH----HhCCCc
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSR----RLGQRR 193 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----~L~~kr 193 (414)
..-|.|.|..|+|||+||+.+++... +++.-.+..| +.........+..+..|.+ .+.-.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v-------------~Cs~l~~~~~e~iQk~l~~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIV-------------SCSTLDGSSLEKIQKFLNNVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEE-------------echhccchhHHHHHHHHHHHHHHHHhhCC
Confidence 35688999999999999999999883 3322111111 0001122233444444433 455689
Q ss_pred EEEEEecCCC
Q 043070 194 FALLLDDLRE 203 (414)
Q Consensus 194 ~LlVlDdv~~ 203 (414)
-+|||||++.
T Consensus 496 SiIvLDdld~ 505 (952)
T KOG0735|consen 496 SIIVLDDLDC 505 (952)
T ss_pred cEEEEcchhh
Confidence 9999999974
No 316
>PRK05973 replicative DNA helicase; Provisional
Probab=94.93 E-value=0.068 Score=48.90 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+|||++|.++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999987665
No 317
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.022 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997654
No 318
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.91 E-value=0.042 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+.|.+ +++.++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 56777777754 799999999999999999998765
No 319
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.90 E-value=0.09 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++-|+|.+|+|||||+.+++...
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997665
No 320
>PF13245 AAA_19: Part of AAA domain
Probab=94.89 E-value=0.041 Score=40.78 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+++.|.|.+|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995554444333
No 321
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.88 E-value=0.027 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|+|.|..|+||||+|+.+++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 322
>PRK05922 type III secretion system ATPase; Validated
Probab=94.87 E-value=0.038 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-..++|+|..|+|||||.+.+.+..
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC
Confidence 344679999999999999999998765
No 323
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.87 E-value=0.055 Score=57.61 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L~ 190 (414)
.-+++-|.|.+|+||||||..++... ...=..++|+ ..+-...+++++...... ...+.++....+...++
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 45788999999999999998866554 1222445777 333345777777654311 33455666666766664
Q ss_pred -CCcEEEEEecCC
Q 043070 191 -QRRFALLLDDLR 202 (414)
Q Consensus 191 -~kr~LlVlDdv~ 202 (414)
++--|||+|.+-
T Consensus 136 ~~~~~LVVIDSI~ 148 (790)
T PRK09519 136 SGALDIVVIDSVA 148 (790)
T ss_pred cCCCeEEEEcchh
Confidence 467789999975
No 324
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.85 E-value=0.031 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||++.+....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC
Confidence 44689999999999999999888765
No 325
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.85 E-value=0.028 Score=46.84 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=31.6
Q ss_pred cchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 101 VDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 101 vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
||.- .++++.+.+.. ....-|.|+|..|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666 67777777743 445677999999999999999999877
No 326
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.85 E-value=0.026 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|+|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 68999999999999999965555
No 327
>PHA02244 ATPase-like protein
Probab=94.84 E-value=0.071 Score=51.75 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 107 NEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 107 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+..++..+ .-|.|+|.+|+|||+||+.+++..
T Consensus 110 ~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 110 ADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444332 346789999999999999999876
No 328
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.83 E-value=0.26 Score=45.19 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCccchH-HH---HHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RL---NEVWRLVED------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~---~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++||.+ .+ .-|++.|.+ -.++-|..+|++|.|||-+|+++++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 5678888 33 335566654 246889999999999999999999988
No 329
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.81 E-value=0.058 Score=58.75 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCCccchH-HHHHHHHHhhc-------C--CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVED-------N--SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++|-+ .++.+.+.+.. . ....+.++|+.|+|||+||+.+++..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 36678999 88998888732 1 23456789999999999999998865
No 330
>PRK15453 phosphoribulokinase; Provisional
Probab=94.81 E-value=0.028 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998755
No 331
>PTZ00494 tuzin-like protein; Provisional
Probab=94.81 E-value=0.2 Score=49.52 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=65.2
Q ss_pred cCCCccchH-HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-----HHHHHHHHHHh
Q 043070 96 DMENTVDVS-RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-----KRIQHVMGYRL 166 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-----~~l~~~i~~~l 166 (414)
....+|.|+ +-.-+.+.|.. ..++++.+.|.-|.||++|.+...... .+ ..++| ++-++.|.+.|
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~~-----paV~VDVRg~EDtLrsVVKAL 442 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-GV-----ALVHVDVGGTEDTLRSVVRAL 442 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-CC-----CeEEEEecCCcchHHHHHHHh
Confidence 346789998 76666666633 678999999999999999999988776 22 22344 78899999999
Q ss_pred cCCCCccCcCCH---hHHHHHHHHHhCCCcEEEEE
Q 043070 167 AMSNEVWDDKTK---QGRAIDSSRRLGQRRFALLL 198 (414)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~~l~~~L~~kr~LlVl 198 (414)
+.+.-+.-..-+ .+.....+....++.-+|||
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVl 477 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVM 477 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 987643111112 22233333345566666666
No 332
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.81 E-value=0.081 Score=52.99 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCc----cCcCC-Hh---
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEV----WDDKT-KQ--- 179 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~----~~~~~-~~--- 179 (414)
.-..++|.|..|+|||||+.++..... .++=+.++++ .++.+.++..-...... ..+.+ ..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999999999887772 2221233334 44455544432111100 01111 11
Q ss_pred --HHHHHHHHHh---CCCcEEEEEecCCCcc-chhhh
Q 043070 180 --GRAIDSSRRL---GQRRFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 180 --~~~~~l~~~L---~~kr~LlVlDdv~~~~-~~~~~ 210 (414)
...-.+.+++ +++++||++||+-.-. ...++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REi 257 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEV 257 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHH
Confidence 2233356666 6799999999986542 34444
No 333
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.80 E-value=0.046 Score=53.88 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=35.0
Q ss_pred CCccchH-HHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+||.+ .+..+.-.+.. -..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5578888 77777655532 123678999999999999999999887
No 334
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.80 E-value=0.047 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+.++|.+|+|||++|+.+++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999998887765
No 335
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.80 E-value=0.05 Score=52.10 Aligned_cols=27 Identities=33% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.....|.++|+.|+||||+++.++...
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 336
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.79 E-value=0.046 Score=55.18 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+++..+.+ ..+.++|..|+||||+|+.+++..
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999977655 567899999999999999998876
No 337
>PRK01184 hypothetical protein; Provisional
Probab=94.77 E-value=0.026 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|+|++|+||||+|+ ++...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 489999999999999987 44443
No 338
>PRK06620 hypothetical protein; Validated
Probab=94.77 E-value=0.024 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+.|+|++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999988766
No 339
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.77 E-value=0.095 Score=50.12 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=34.6
Q ss_pred CCcccccCCCccchHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 90 PVVEVQDMENTVDVSRLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 90 ~~~~~~~~~~~vGr~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++..++...+.-+....++.+|... +-|.|.|.+|+||||+|+.++...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH
Confidence 333333333444444445566666433 469999999999999999999876
No 340
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.77 E-value=0.029 Score=50.36 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
...+.|.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999754
No 341
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.77 E-value=0.063 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|+|.+|+||||++..+....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998877
No 342
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.77 E-value=0.024 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|+|+|-||+||||+|..++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999998888766
No 343
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.77 E-value=0.036 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-..++|+|..|+|||||++.+++..
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345789999999999999999999766
No 344
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.76 E-value=0.028 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|+|..|+|||||++.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999877
No 345
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.73 E-value=0.029 Score=42.85 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 346
>PLN02165 adenylate isopentenyltransferase
Probab=94.73 E-value=0.024 Score=54.23 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=25.4
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 114 EDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 114 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..-.+|+|+|+.|+||||||..++...
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44556799999999999999999999886
No 347
>PRK05439 pantothenate kinase; Provisional
Probab=94.73 E-value=0.031 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988765
No 348
>PRK06761 hypothetical protein; Provisional
Probab=94.73 E-value=0.027 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999887
No 349
>PRK08149 ATP synthase SpaL; Validated
Probab=94.70 E-value=0.046 Score=54.29 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||...+++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC
Confidence 44689999999999999999998765
No 350
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.68 E-value=0.038 Score=55.11 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCCc----cCcCC-H----
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNEV----WDDKT-K---- 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~~----~~~~~-~---- 178 (414)
.-..++|.|.+|+|||+|+.++.+... +.+-+.++++ .++.+++...-...... ..+.+ .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 346799999999999999999988762 2333566666 44444444321111000 01111 1
Q ss_pred -hHHHHHHHHHhC---CCcEEEEEecCCCcc-chhhh
Q 043070 179 -QGRAIDSSRRLG---QRRFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 179 -~~~~~~l~~~L~---~kr~LlVlDdv~~~~-~~~~~ 210 (414)
-...-.+.++++ ++++||++||+-... ...++
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REi 251 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEV 251 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHH
Confidence 122334556654 689999999986543 44444
No 351
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.68 E-value=0.092 Score=47.99 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+||||||.++....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999986665544
No 352
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.68 E-value=0.027 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|-||+||||+|..++...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999998887766
No 353
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.67 E-value=0.029 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.++|.+|+||||+|+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998876
No 354
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.66 E-value=0.034 Score=47.57 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++++|+|..|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999998877
No 355
>PRK02496 adk adenylate kinase; Provisional
Probab=94.66 E-value=0.033 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.|+|++|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 356
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.65 E-value=0.072 Score=49.63 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCCcchHhH---------HHHHHHHHHHhcCCCCcc----CcCC-H---
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDT-RHNFGLVILV---------KRIQHVMGYRLAMSNEVW----DDKT-K--- 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v-~~~F~~~~wv---------~~l~~~i~~~l~~~~~~~----~~~~-~--- 178 (414)
.-..++|.|-.|+|||+|+..+.++.... +.+-+.++++ .++.+++...-....... .+.+ .
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 34578999999999999999998876100 1223555555 444444443311111000 0111 1
Q ss_pred --hHHHHHHHHHh--C-CCcEEEEEecCCCc
Q 043070 179 --QGRAIDSSRRL--G-QRRFALLLDDLREP 204 (414)
Q Consensus 179 --~~~~~~l~~~L--~-~kr~LlVlDdv~~~ 204 (414)
-...-.+.+++ + ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11122345555 2 68999999998554
No 357
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.64 E-value=0.035 Score=51.69 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV 155 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv 155 (414)
+.-+++.|+|.+|+|||++|.++.... ......++||
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyv 57 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYV 57 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEE
Confidence 456899999999999999999998888 4558888898
No 358
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.62 E-value=0.034 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999876
No 359
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.62 E-value=0.058 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||++.+....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999887654
No 360
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.58 E-value=0.032 Score=53.12 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 115 DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 115 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.++|++.|-||+||||+|..++.-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4677999999999999999888877665
No 361
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.57 E-value=0.031 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|-||+||||++..++.-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 478999999999999998888776
No 362
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.57 E-value=0.034 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|.+|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 363
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.56 E-value=0.1 Score=51.84 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHH
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAID 184 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 184 (414)
-..++.+.+..... ++.|.|+-++|||||++.+.... .+. .+++ ...+ ...+...+.+.
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~-----------~~~d---~~~~~~~l~d~ 83 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYI-----------NFDD---LRLDRIELLDL 83 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEE-----------Eecc---hhcchhhHHHH
Confidence 44455555544333 99999999999999997776665 121 0000 0000 01111122222
Q ss_pred HHHHh---CCCcEEEEEecCCCccchhhh
Q 043070 185 SSRRL---GQRRFALLLDDLREPIDLKTA 210 (414)
Q Consensus 185 l~~~L---~~kr~LlVlDdv~~~~~~~~~ 210 (414)
++.+. ..++.+|+||.|.....|...
T Consensus 84 ~~~~~~~~~~~~~yifLDEIq~v~~W~~~ 112 (398)
T COG1373 84 LRAYIELKEREKSYIFLDEIQNVPDWERA 112 (398)
T ss_pred HHHHHHhhccCCceEEEecccCchhHHHH
Confidence 22222 227789999999999999876
No 364
>PRK14529 adenylate kinase; Provisional
Probab=94.56 E-value=0.1 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999888
No 365
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.55 E-value=0.089 Score=53.71 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+..+-++|.. ..-.++.|.|.+|+|||||+.++....
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33444445543 345799999999999999999998776
No 366
>PLN02348 phosphoribulokinase
Probab=94.55 E-value=0.049 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999877
No 367
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.55 E-value=0.032 Score=55.30 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+.|+|+|..|+|||||+..+++..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999876
No 368
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.54 E-value=0.073 Score=52.53 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=36.5
Q ss_pred CCccchH-HHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .+..+..++.. -...-|.++|++|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999 88888877732 013678999999999999999998876
No 369
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.53 E-value=0.029 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 043070 120 IICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~ 140 (414)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 370
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.52 E-value=0.061 Score=53.69 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCCC----ccCcCC-Hh---
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSNE----VWDDKT-KQ--- 179 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~~----~~~~~~-~~--- 179 (414)
+-..++|.|..|+|||||+.++.+... +++=..++++ .++++++...-..... ...+.+ ..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999987762 2222234444 3444444332111110 001111 11
Q ss_pred --HHHHHHHHHh---CCCcEEEEEecCCCcc-chhhh
Q 043070 180 --GRAIDSSRRL---GQRRFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 180 --~~~~~l~~~L---~~kr~LlVlDdv~~~~-~~~~~ 210 (414)
...-.+.+++ +++++||++||+-.-. ...++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REi 256 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEV 256 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHH
Confidence 1233455666 4689999999996553 44444
No 371
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.51 E-value=0.03 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|-||+||||+|..++.-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999998887665
No 372
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.51 E-value=0.026 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.2
Q ss_pred EEcCCCCcHHHHHHHHHHhh
Q 043070 123 LHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 123 I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987
No 373
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.03 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+-|.|.|.+|+||||||..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568899999999999999999655
No 374
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.50 E-value=0.031 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|-||+||||+|..++...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578899999999999998887766
No 375
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.49 E-value=0.076 Score=48.76 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=27.7
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++++.|.. .+..+|+|.|.||+||+||.-.+....
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 34455555532 567899999999999999999888776
No 376
>PRK08356 hypothetical protein; Provisional
Probab=94.47 E-value=0.033 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLN 139 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~ 139 (414)
..+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999994
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.46 E-value=0.11 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|++++|..|+||||++.+++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998766
No 378
>PRK13695 putative NTPase; Provisional
Probab=94.46 E-value=0.036 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 379
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.46 E-value=0.042 Score=47.10 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 380
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.039 Score=47.93 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999876
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.43 E-value=0.042 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 382
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.43 E-value=0.065 Score=57.75 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=37.9
Q ss_pred CCccchH-HHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+|.+ .++.|+++|.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999 99999988842 345689999999999999999999876
No 383
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.42 E-value=0.031 Score=46.27 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3689999999999999999987665
No 384
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.36 E-value=0.19 Score=48.06 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-.++-|+|.+|+|||+|+.+++-.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHH
Confidence 4578999999999999999887643
No 385
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.35 E-value=0.11 Score=47.55 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYR 165 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~ 165 (414)
-.++.|.|.+|+|||+++..+..+.. ..+=..++|+ .++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEMSKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCCCHHHHHHHHHHH
Confidence 36899999999999999999877662 2212344455 5566655443
No 386
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.34 E-value=0.034 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 387
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.14 Score=46.84 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=36.1
Q ss_pred CccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++-|-+ .++++++.+. . ..++-+.++|++|.|||-+|++.+.+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 345788 9999999871 1 356788999999999999999998877
No 388
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.34 E-value=0.042 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|.|+.|+||||+|+.++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999877
No 389
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.33 E-value=0.03 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|.|+|++|+|||||...+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468999999999999999998776
No 390
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.33 E-value=0.063 Score=50.09 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++..++..+ .-|.+.|.+|+|||+||+.+++..
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444433 356689999999999999998755
No 391
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.32 E-value=0.051 Score=47.71 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....++.|.|.+|+||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999999876
No 392
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=0.048 Score=58.83 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=39.4
Q ss_pred CCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||.+ .++.|.+++..+++. .+.++|..|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999 999999999776654 57899999999999999999877
No 393
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.31 E-value=0.036 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.|+|.+|+||||++..+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998877
No 394
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.30 E-value=0.073 Score=47.30 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|+|+|+.|+||||+|+.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998874
No 395
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.28 E-value=0.037 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.+.|-||+||||+|...+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 688999999999999998776554
No 396
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.27 E-value=0.17 Score=49.04 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=33.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCcchHhH-------HHHHHHHHHHhcCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRH----NFGLVILV-------KRIQHVMGYRLAMS 169 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~----~F~~~~wv-------~~l~~~i~~~l~~~ 169 (414)
.-.++-|+|.+|+|||+||..++-.. .... .-..++|+ .+=+.+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCC
Confidence 45788999999999999998887543 1111 11246677 22345566666543
No 397
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.26 E-value=0.11 Score=51.08 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=33.3
Q ss_pred hH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHH-HHHHHhh
Q 043070 103 VS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLL-YNLNKKF 142 (414)
Q Consensus 103 r~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~ 142 (414)
|. ..++|..||.+..-..|.|.|+-|+||+.|+ .++.++.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r 42 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR 42 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC
Confidence 44 6889999998877789999999999999999 6655443
No 398
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.24 E-value=0.088 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-..++|+|..|+|||||++.+....
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344689999999999999999998765
No 399
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.055 Score=56.91 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCccchH----HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS----RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~----~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|-+ ++.++++.|.+ .-++=+.++|++|.|||-||++++-..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 4566876 56666666644 235778999999999999999999877
No 400
>PRK13768 GTPase; Provisional
Probab=94.22 E-value=0.046 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999998887666
No 401
>PRK12338 hypothetical protein; Provisional
Probab=94.22 E-value=0.046 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|.+|+||||+|+.++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999887
No 402
>PLN02796 D-glycerate 3-kinase
Probab=94.22 E-value=0.047 Score=52.53 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999877
No 403
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.21 E-value=0.14 Score=45.46 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345689999999999999999988764
No 404
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.19 E-value=0.058 Score=55.36 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++..+|+|.|..|+||||||+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 457899999999999999999998765
No 405
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.17 E-value=0.082 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~ 141 (414)
+.|.|.+|+|||++|.++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998765
No 406
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.16 E-value=0.042 Score=45.93 Aligned_cols=24 Identities=46% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.++|..|+|||||++.+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999997755
No 407
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.14 E-value=0.058 Score=53.68 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+-..++|.|..|+|||||.+.+++..
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 344689999999999999999999876
No 408
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.075 Score=55.71 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .+..|..++..... ..+.++|..|+||||+|+.+++..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 5688999 99999999976543 577899999999999999999887
No 409
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.12 E-value=0.097 Score=46.54 Aligned_cols=35 Identities=34% Similarity=0.430 Sum_probs=27.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 108 EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.+..+...+-+++.|.|.+|.||||+...+....
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33444434455789999999999999999998877
No 410
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.071 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+.|||++|.|||-||+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 46789999999999999999999988
No 411
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.073 Score=54.16 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|-+ -+..+.+++..+.+ ..+.++|+.|+||||+|+.++...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999 99999999977554 456789999999999999998865
No 412
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.10 E-value=0.089 Score=50.55 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=39.8
Q ss_pred CCccchH-HHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++++++.+.+ ..-+++-++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999 99999999943 456899999999999999999998877
No 413
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.08 E-value=0.044 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~ 141 (414)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 414
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.07 E-value=0.15 Score=48.97 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..-.++.|+|.+|+|||||+..++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 34679999999999999999988753
No 415
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.07 E-value=0.042 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 416
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.07 E-value=0.043 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|-||+||||+|..+..-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999998887765
No 417
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.06 E-value=0.044 Score=49.19 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998755
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.05 E-value=0.044 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998765
No 419
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.02 E-value=0.08 Score=52.65 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCccchH-HHHHHHHHhhc-------C---------CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------N---------SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+||.+ .++.+...+.+ . ...-+.++|++|+|||+||+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999 77777555411 0 12568999999999999999999776
No 420
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.02 E-value=0.061 Score=55.02 Aligned_cols=45 Identities=31% Similarity=0.405 Sum_probs=35.4
Q ss_pred CCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++--. -++++.+||.+ ...+++.+.|++|+||||.++.+++..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444445 88888889854 335789999999999999999999876
No 421
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.07 Score=55.26 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=39.7
Q ss_pred CCCccchH-HHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVR-IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|-+ .++.|.+++.++.+. .+.++|+.|+||||+|+.+++..
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999 999999999775544 68899999999999999999876
No 422
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.01 E-value=0.048 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998765
No 423
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.00 E-value=0.046 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|-||+||||+|..++.-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999998776655
No 424
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.99 E-value=0.044 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988754
No 425
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.99 E-value=0.046 Score=48.20 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+....
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998755
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.98 E-value=0.087 Score=49.19 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=28.5
Q ss_pred HHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 107 NEVWRLVE--DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 107 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++..+. ..+..+|+|.|.||+||+||.-.+-...
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 45555553 3667899999999999999998887776
No 427
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.97 E-value=0.046 Score=49.29 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 428
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.97 E-value=0.046 Score=46.57 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987654
No 429
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.051 Score=48.93 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.. .+++|+|..|+|||||++.+....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999998765
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.05 Score=47.52 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 431
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.94 E-value=0.042 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 432
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.93 E-value=0.091 Score=50.59 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=28.1
Q ss_pred HHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 107 NEVWRLVE--DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 107 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++.+. ..+..+|+|.|.+|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455443 3567899999999999999999987766
No 433
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.93 E-value=0.052 Score=47.70 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.|.|+|++|+|||||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998875
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.93 E-value=0.079 Score=46.64 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHH-----HhcCCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGY-----RLAMSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~-----~l~~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
-..+.|+|..|+|||||++.+.... ... ...+-++...+--+. ++................+.++..++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i---~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI---PPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc---CCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 4689999999999999999988765 111 111111000000000 0000000000111233455666677777
Q ss_pred cEEEEEecCCCccchhhh
Q 043070 193 RFALLLDDLREPIDLKTA 210 (414)
Q Consensus 193 r~LlVlDdv~~~~~~~~~ 210 (414)
+=.++++.+.+.+.+..+
T Consensus 101 pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 101 PDRIIVGEVRGGEALDLL 118 (186)
T ss_pred CCEEEEEccCcHHHHHHH
Confidence 778888888887655433
No 435
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.92 E-value=0.061 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||++.+....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~ 192 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT 192 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44679999999999999999987654
No 436
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.19 Score=46.84 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCccchH-HHHHHHHHh----------hc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLV----------ED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGY 164 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L----------~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~ 164 (414)
+++.|.| .++.|.+.+ +. ...+-|.++|++|.||+-||++|+.... ...|...- .++....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSS--SDLvSKW-- 206 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSS--SDLVSKW-- 206 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeeh--HHHHHHH--
Confidence 3456888 888888875 11 2367899999999999999999998772 33342210 1111111
Q ss_pred HhcCCCCccCcCCHhHHHHHHHHHh-CCCcEEEEEecCCC
Q 043070 165 RLAMSNEVWDDKTKQGRAIDSSRRL-GQRRFALLLDDLRE 203 (414)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 203 (414)
+| .-+.+...|.+.- ++|...|.+|.++.
T Consensus 207 -mG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 207 -MG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -hc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 1123344444433 45888888998864
No 437
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.92 E-value=0.25 Score=47.87 Aligned_cols=52 Identities=23% Similarity=0.135 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcC----CCCcchHhH-------HHHHHHHHHHhcCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTR----HNFGLVILV-------KRIQHVMGYRLAMS 169 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~----~~F~~~~wv-------~~l~~~i~~~l~~~ 169 (414)
.-.++-|+|.+|+|||+|+..++-.. ... ..-...+|| .+=+.++++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 45788899999999999999886433 111 111345677 23344566666543
No 438
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.91 E-value=0.16 Score=47.62 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+++.+...+ +-+.++|+.|+|||++++...+..
T Consensus 21 r~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 21 RYSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC
Confidence 4556666665554 456899999999999999988765
No 439
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.87 E-value=0.2 Score=46.84 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYR 165 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~ 165 (414)
.-.++.|.|.+|+||||++.+++.... ..+=..++|+ .++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccCHHHHHHHHHHH
Confidence 345889999999999999999877661 2212345566 4555555444
No 440
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.052 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..|+|+|++|+|||||-+.++--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998544
No 441
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.84 E-value=0.046 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|..|+|||||++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998765
No 442
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.82 E-value=0.096 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+-+|.|.|.+|+||||+|..+++..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999887
No 443
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.81 E-value=0.056 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+++|..|+|||||...+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999987543
No 444
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.81 E-value=0.064 Score=43.34 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.+.|.||+||||++..+++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998876
No 445
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.78 E-value=0.24 Score=43.00 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|++|.||+||-..|+--.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 34689999999999999999987543
No 446
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.78 E-value=0.12 Score=51.78 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc--chHhH---------HHHHHHHHHHhcCCCCcc----CcC-CH--
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG--LVILV---------KRIQHVMGYRLAMSNEVW----DDK-TK-- 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~--~~~wv---------~~l~~~i~~~l~~~~~~~----~~~-~~-- 178 (414)
.-..++|.|-.|+|||||+.++.+.. ...+.+. .++++ .++++.+...-....... .+. ..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34578999999999999999999876 2221221 22233 344444443211111000 011 11
Q ss_pred ---hHHHHHHHHHhC---CCcEEEEEecCCCcc-chhhh
Q 043070 179 ---QGRAIDSSRRLG---QRRFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 179 ---~~~~~~l~~~L~---~kr~LlVlDdv~~~~-~~~~~ 210 (414)
-...-.+.++++ ++++||++||+-.-. ...++
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REI 257 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREI 257 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence 112223556665 689999999986543 44444
No 447
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.77 E-value=0.055 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++.+.|.||+||||+|.+.+-..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l 26 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL 26 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH
Confidence 4789999999999999998866554
No 448
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.18 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
+-.-|+|+|..|+|||||++.+...
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999853
No 449
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.76 E-value=0.054 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44699999999999999999998754
No 450
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.76 E-value=0.051 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|-||+||||+|..++...
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 689999999999999999998876
No 451
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.053 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998755
No 452
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.73 E-value=0.3 Score=45.61 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCccchHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHh
Q 043070 98 ENTVDVSRLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRL 166 (414)
Q Consensus 98 ~~~vGr~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l 166 (414)
+.|+|..-..++..++.. ..-+.+.++|+.|+|||+-++.+++.. +.+|+ ..+...+....
T Consensus 72 ~~~l~tkt~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~--------p~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 72 PDFLETKTVRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN--------PNALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred ccccccchhHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC--------ccceeecCChhhHHHHHHHHHHHHH
Confidence 456665544555555522 233488999999999999999999876 23344 23333333333
Q ss_pred cCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCc
Q 043070 167 AMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
... ...........+...+.+..-+++.|+....
T Consensus 144 ~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 144 FGA----TDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred hcc----cchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 222 3345666777788888999999999988765
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.056 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 454
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.73 E-value=0.083 Score=45.43 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+...|+|+|.+|+|||||.+.+....
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~ 38 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED 38 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 455
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.055 Score=48.65 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 456
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.72 E-value=0.056 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998765
No 457
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.71 E-value=0.048 Score=45.42 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999998887654
No 458
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.71 E-value=0.054 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||...+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999887654
No 459
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.70 E-value=0.088 Score=46.16 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 107 NEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 107 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..+..++.. .....|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 5 YDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 445565642 44467889999999999999888754
No 460
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.70 E-value=0.14 Score=41.74 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.||.+.|.=|+||||+++.+.+..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 344799999999999999999999877
No 461
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.68 E-value=0.057 Score=48.60 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999988654
No 462
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.68 E-value=0.057 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999765
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.68 E-value=0.055 Score=49.72 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998654
No 464
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.67 E-value=0.054 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.|+|.+|+|||||+..+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987654
No 465
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.056 Score=49.60 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998654
No 466
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.053 Score=48.71 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++|+|..|+|||||++.++...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998754
No 467
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.64 E-value=0.07 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999887
No 468
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.1 Score=54.14 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=39.0
Q ss_pred CCCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-++++|.+ .++.+.+++...+ ...+.++|+.|+||||+|+.+.+..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 9999999997654 4457789999999999999998765
No 469
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.058 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||++.++...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 470
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.63 E-value=0.12 Score=53.70 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=30.3
Q ss_pred ccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 100 TVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.|. -.+.|.+.... .+..+|.|+|++|+||||+|+.++...
T Consensus 371 ~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred hhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 33455 33344444322 345689999999999999999999887
No 471
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.63 E-value=0.097 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|.+|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999988765
No 472
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.63 E-value=0.096 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||.+.+.+..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999888765
No 473
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.62 E-value=0.12 Score=52.17 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCCC------Cc---cCcCCH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMSN------EV---WDDKTK 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~~------~~---~~~~~~ 178 (414)
.-..++|.|-.|+|||||+.++..... +.+=+.++++ .++.+.++..-.... .. ....+.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 346799999999999999999888741 1212455555 344444444111000 00 011111
Q ss_pred h--------HHHHHHHHHhC--CC-cEEEEEecCCCcc-chhhh
Q 043070 179 Q--------GRAIDSSRRLG--QR-RFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 179 ~--------~~~~~l~~~L~--~k-r~LlVlDdv~~~~-~~~~~ 210 (414)
. ...-.+.++++ ++ ++||++||+-... ...++
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REI 281 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEV 281 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHH
Confidence 1 22334667773 44 9999999996553 44444
No 474
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=93.62 E-value=0.06 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|-||+||||+|..+..-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999888766
No 475
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.61 E-value=0.059 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|++.|-||+||||+|..++...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 68888999999999888877655
No 476
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.083 Score=55.81 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+++..+++ ..+.++|+.|+||||+|+.+++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999 89999999977554 466899999999999999998876
No 477
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.61 E-value=0.06 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|-||+||||+|..++...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 68999999999999988877665
No 478
>PLN02459 probable adenylate kinase
Probab=93.60 E-value=0.22 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|.|.|++|+||||+|..+...+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 347778999999999999999877
No 479
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.58 E-value=0.057 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999999865
No 480
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.58 E-value=0.14 Score=47.66 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLL-YNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA-~~v~~~~ 142 (414)
+-..++|.|..|+|||+|| ..+.+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~ 94 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK 94 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc
Confidence 3467899999999999996 5565543
No 481
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.57 E-value=0.061 Score=48.90 Aligned_cols=26 Identities=42% Similarity=0.382 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999998654
No 482
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.57 E-value=0.061 Score=48.35 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 483
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.54 E-value=0.055 Score=45.91 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||.+.+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 484
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.53 E-value=0.056 Score=48.59 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998754
No 485
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.52 E-value=0.063 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.-.+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446899999999999999998864
No 486
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.49 E-value=0.1 Score=50.28 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.. .+.++.+.+.. ....-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4688999 99999888844 344578899999999999999998655
No 487
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.49 E-value=0.064 Score=48.79 Aligned_cols=26 Identities=38% Similarity=0.248 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44799999999999999999998765
No 488
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=93.49 E-value=0.1 Score=45.15 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=25.4
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 108 EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+++.......|+++|.+|+|||||...+....
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~ 39 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGE 39 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCC
Confidence 44555533344578899999999999998886543
No 489
>PRK07933 thymidylate kinase; Validated
Probab=93.48 E-value=0.074 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|+|-|+-|+||||+++.+.+..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999988
No 490
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.48 E-value=0.065 Score=48.50 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.48 E-value=0.064 Score=47.94 Aligned_cols=26 Identities=38% Similarity=0.363 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998755
No 492
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.48 E-value=0.14 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||.+.+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC
Confidence 34688999999999999999988766
No 493
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.47 E-value=0.07 Score=45.32 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|.++|.+|+|||||...+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988754
No 494
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.47 E-value=0.064 Score=49.11 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34699999999999999999998654
No 495
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.45 E-value=0.063 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+++|.+|+|||||+..+.+..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999998876543
No 496
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.45 E-value=0.062 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||+..+.+..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~ 25 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999998877543
No 497
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.064 Score=49.23 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998755
No 498
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.17 Score=52.23 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCccchH-H---HHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-R---LNEVWRLVEDN---------SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~---~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..|.| . +.++++.|.++ =++-+.++|++|.|||.||++++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4566876 4 45555555542 14678999999999999999999988
No 499
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.44 E-value=0.064 Score=44.86 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999988765
No 500
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.11 Score=54.16 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCCccchH-HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSV-RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+++||.+ -+..|.+.+..+++ ..+.++|..|+||||+|+.+++..
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999 99999999977665 456899999999999999998876
Done!