Query 043070
Match_columns 414
No_of_seqs 339 out of 2463
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 22:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-46 1.8E-50 382.0 15.3 278 101-397 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-38 1.4E-42 351.6 23.3 279 94-395 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.2E-36 1.1E-40 317.0 15.3 247 100-388 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.6E-35 1.9E-39 302.9 20.5 276 94-393 120-450 (591)
5 2qen_A Walker-type ATPase; unk 99.5 1.9E-12 6.5E-17 124.2 18.1 254 96-389 10-349 (350)
6 2fna_A Conserved hypothetical 99.4 9.1E-12 3.1E-16 119.7 15.3 259 96-388 11-356 (357)
7 1w5s_A Origin recognition comp 99.3 5.7E-12 2E-16 123.9 13.3 250 98-371 22-372 (412)
8 2qby_B CDC6 homolog 3, cell di 99.1 6.7E-09 2.3E-13 100.9 19.6 249 98-371 20-340 (384)
9 2v1u_A Cell division control p 99.0 6.7E-09 2.3E-13 100.8 17.2 248 98-371 19-352 (387)
10 2qby_A CDC6 homolog 1, cell di 99.0 2E-09 6.7E-14 104.4 12.7 106 98-204 20-140 (386)
11 1fnn_A CDC6P, cell division co 99.0 2E-08 6.8E-13 97.6 19.2 104 98-204 17-137 (389)
12 1hqc_A RUVB; extended AAA-ATPa 98.8 1.4E-08 4.7E-13 96.4 10.9 46 97-142 11-62 (324)
13 3qfl_A MLA10; coiled-coil, (CC 98.8 4.1E-10 1.4E-14 90.1 -2.1 30 3-34 55-84 (115)
14 1njg_A DNA polymerase III subu 98.7 2.5E-08 8.5E-13 89.7 9.1 164 98-267 23-231 (250)
15 2chg_A Replication factor C sm 98.6 1.4E-07 4.8E-12 83.6 11.0 45 98-142 17-62 (226)
16 1sxj_B Activator 1 37 kDa subu 98.5 7.4E-07 2.5E-11 84.1 11.2 45 98-142 21-66 (323)
17 1jbk_A CLPB protein; beta barr 98.3 2.3E-06 7.9E-11 73.7 9.0 46 97-142 21-67 (195)
18 1iqp_A RFCS; clamp loader, ext 98.2 6.3E-06 2.1E-10 77.7 10.3 46 97-142 24-70 (327)
19 3te6_A Regulatory protein SIR3 98.1 6.5E-06 2.2E-10 77.5 9.4 106 98-205 20-145 (318)
20 2chq_A Replication factor C sm 97.9 5.2E-05 1.8E-09 71.1 10.4 46 97-142 16-62 (319)
21 1jr3_A DNA polymerase III subu 97.9 8E-05 2.7E-09 71.5 11.7 45 98-142 16-62 (373)
22 2p65_A Hypothetical protein PF 97.8 1.9E-05 6.5E-10 67.6 5.6 46 97-142 21-67 (187)
23 2w58_A DNAI, primosome compone 97.8 2.6E-05 9E-10 68.3 5.8 84 105-203 37-126 (202)
24 3h4m_A Proteasome-activating n 97.7 5.8E-05 2E-09 69.8 7.9 45 98-142 17-75 (285)
25 3ec2_A DNA replication protein 97.6 0.00013 4.4E-09 62.6 7.8 85 105-203 22-111 (180)
26 3pvs_A Replication-associated 97.6 0.00011 3.8E-09 72.6 8.2 47 96-142 24-74 (447)
27 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00023 7.7E-09 64.7 9.6 45 98-142 6-63 (262)
28 3cf0_A Transitional endoplasmi 97.5 0.00028 9.6E-09 66.0 8.4 90 98-203 15-119 (301)
29 3u61_B DNA polymerase accessor 97.4 0.0003 1E-08 66.3 8.0 46 97-142 25-72 (324)
30 3b9p_A CG5977-PA, isoform A; A 97.4 0.00038 1.3E-08 64.7 8.6 45 98-142 21-78 (297)
31 3eie_A Vacuolar protein sortin 97.4 0.00034 1.2E-08 66.1 7.9 45 98-142 18-75 (322)
32 2z4s_A Chromosomal replication 97.3 0.00027 9.1E-09 69.8 7.0 93 98-204 105-206 (440)
33 3d8b_A Fidgetin-like protein 1 97.3 0.00041 1.4E-08 66.5 7.9 45 98-142 84-141 (357)
34 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00072 2.5E-08 63.8 9.0 45 98-142 12-69 (322)
35 3vfd_A Spastin; ATPase, microt 97.3 0.001 3.4E-08 64.5 9.9 45 98-142 115-172 (389)
36 4b4t_J 26S protease regulatory 97.2 0.0006 2.1E-08 65.9 7.9 45 98-142 148-206 (405)
37 2qp9_X Vacuolar protein sortin 97.2 0.00067 2.3E-08 64.9 8.1 45 98-142 51-108 (355)
38 1lv7_A FTSH; alpha/beta domain 97.2 0.0013 4.3E-08 59.8 9.3 45 98-142 12-69 (257)
39 4b4t_L 26S protease subunit RP 97.2 0.00081 2.8E-08 65.9 8.3 45 98-142 181-239 (437)
40 1d2n_A N-ethylmaleimide-sensit 97.2 0.001 3.6E-08 60.9 8.5 45 98-142 33-88 (272)
41 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0012 4.1E-08 69.8 9.9 45 98-142 186-231 (758)
42 4b4t_M 26S protease regulatory 97.1 0.00056 1.9E-08 67.0 6.6 45 98-142 181-239 (434)
43 1l8q_A Chromosomal replication 97.1 0.00081 2.8E-08 63.3 7.6 45 98-142 11-61 (324)
44 3pxg_A Negative regulator of g 97.1 0.00046 1.6E-08 68.7 6.1 45 98-142 180-225 (468)
45 3t15_A Ribulose bisphosphate c 97.1 0.00038 1.3E-08 64.8 5.1 26 117-142 35-60 (293)
46 3n70_A Transport activator; si 97.1 0.00044 1.5E-08 57.1 4.9 44 99-142 2-48 (145)
47 4b4t_H 26S protease regulatory 97.1 0.0011 3.6E-08 65.2 8.0 45 98-142 209-267 (467)
48 4b4t_K 26S protease regulatory 97.1 0.0011 3.9E-08 64.7 8.0 45 98-142 172-230 (428)
49 1sxj_D Activator 1 41 kDa subu 97.1 0.00047 1.6E-08 65.5 5.1 46 97-142 36-82 (353)
50 4b4t_I 26S protease regulatory 97.0 0.0012 4E-08 64.2 7.8 45 98-142 182-240 (437)
51 3pfi_A Holliday junction ATP-d 97.0 0.00074 2.5E-08 63.9 5.7 46 97-142 28-79 (338)
52 1sxj_A Activator 1 95 kDa subu 96.9 0.00086 2.9E-08 67.6 5.8 45 98-142 39-101 (516)
53 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0017 5.9E-08 60.7 6.6 71 118-204 123-194 (331)
54 3hu3_A Transitional endoplasmi 96.8 0.0019 6.4E-08 64.5 7.2 89 98-202 204-307 (489)
55 2x8a_A Nuclear valosin-contain 96.8 0.0033 1.1E-07 57.8 8.2 45 98-142 10-68 (274)
56 3syl_A Protein CBBX; photosynt 96.7 0.0017 5.8E-08 60.5 5.9 44 99-142 32-91 (309)
57 2ce7_A Cell division protein F 96.7 0.0034 1.2E-07 62.3 8.3 90 98-203 16-119 (476)
58 3pxi_A Negative regulator of g 96.7 0.0013 4.5E-08 69.5 5.6 45 98-142 180-225 (758)
59 1sxj_E Activator 1 40 kDa subu 96.7 0.00083 2.8E-08 63.9 3.7 46 97-142 13-60 (354)
60 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0043 1.5E-07 62.0 8.8 45 98-142 31-88 (499)
61 1qvr_A CLPB protein; coiled co 96.7 0.0014 4.6E-08 70.3 5.4 46 97-142 169-215 (854)
62 3uk6_A RUVB-like 2; hexameric 96.7 0.0022 7.4E-08 61.4 6.2 46 97-142 43-94 (368)
63 3co5_A Putative two-component 96.6 0.00052 1.8E-08 56.5 1.5 45 98-142 4-51 (143)
64 1ofh_A ATP-dependent HSL prote 96.6 0.0021 7.2E-08 59.7 5.6 45 98-142 15-74 (310)
65 1rz3_A Hypothetical protein rb 96.6 0.0027 9.2E-08 55.3 6.0 40 103-142 3-46 (201)
66 2qgz_A Helicase loader, putati 96.6 0.0013 4.3E-08 61.7 3.9 38 105-142 136-176 (308)
67 1sxj_C Activator 1 40 kDa subu 96.6 0.0022 7.6E-08 60.8 5.5 45 98-142 25-70 (340)
68 3cf2_A TER ATPase, transitiona 96.6 0.0046 1.6E-07 65.1 8.3 90 98-203 204-308 (806)
69 3bos_A Putative DNA replicatio 96.5 0.004 1.4E-07 55.3 6.6 45 98-142 28-76 (242)
70 1in4_A RUVB, holliday junction 96.5 0.0023 7.8E-08 60.7 5.1 46 97-142 24-75 (334)
71 1n0w_A DNA repair protein RAD5 96.4 0.0035 1.2E-07 55.9 5.8 86 117-203 23-130 (243)
72 3hr8_A Protein RECA; alpha and 96.4 0.0018 6.3E-08 61.7 4.0 85 117-204 60-151 (356)
73 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 54.6 3.5 23 119-142 2-24 (179)
74 1qhx_A CPT, protein (chloramph 96.4 0.0019 6.5E-08 54.8 3.7 24 119-142 4-27 (178)
75 3kb2_A SPBC2 prophage-derived 96.4 0.0019 6.6E-08 54.3 3.7 24 119-142 2-25 (173)
76 2r62_A Cell division protease 96.4 0.0023 7.8E-08 58.3 4.4 45 98-142 11-68 (268)
77 3c8u_A Fructokinase; YP_612366 96.3 0.0032 1.1E-07 55.2 4.8 37 106-142 8-46 (208)
78 2bjv_A PSP operon transcriptio 96.3 0.0027 9.1E-08 57.9 4.4 45 98-142 6-53 (265)
79 2b8t_A Thymidine kinase; deoxy 96.3 0.00061 2.1E-08 60.7 -0.1 85 117-203 11-100 (223)
80 3vaa_A Shikimate kinase, SK; s 96.3 0.0026 8.8E-08 55.3 3.9 26 117-142 24-49 (199)
81 4eun_A Thermoresistant glucoki 96.2 0.0029 1E-07 55.0 3.9 27 116-142 27-53 (200)
82 1ly1_A Polynucleotide kinase; 96.2 0.0028 9.7E-08 53.7 3.6 22 119-140 3-24 (181)
83 3uie_A Adenylyl-sulfate kinase 96.2 0.0037 1.3E-07 54.4 4.4 27 116-142 23-49 (200)
84 4fcw_A Chaperone protein CLPB; 96.2 0.0038 1.3E-07 58.1 4.7 45 98-142 17-71 (311)
85 3trf_A Shikimate kinase, SK; a 96.2 0.003 1E-07 53.9 3.7 25 118-142 5-29 (185)
86 1kag_A SKI, shikimate kinase I 96.2 0.0026 8.9E-08 53.7 3.2 24 119-142 5-28 (173)
87 2zr9_A Protein RECA, recombina 96.2 0.0085 2.9E-07 57.0 7.1 84 117-203 60-150 (349)
88 1nks_A Adenylate kinase; therm 96.2 0.0033 1.1E-07 53.9 3.8 24 119-142 2-25 (194)
89 2rhm_A Putative kinase; P-loop 96.1 0.0038 1.3E-07 53.6 4.1 25 118-142 5-29 (193)
90 1xp8_A RECA protein, recombina 96.1 0.0037 1.3E-07 59.9 4.4 85 117-204 73-164 (366)
91 1ypw_A Transitional endoplasmi 96.1 0.0046 1.6E-07 65.7 5.5 45 98-142 204-262 (806)
92 2cvh_A DNA repair and recombin 96.1 0.0064 2.2E-07 53.3 5.6 24 117-140 19-42 (220)
93 2hf9_A Probable hydrogenase ni 96.1 0.0066 2.3E-07 53.5 5.8 38 105-142 25-62 (226)
94 1zp6_A Hypothetical protein AT 96.1 0.0034 1.2E-07 53.9 3.8 26 117-142 8-33 (191)
95 3t61_A Gluconokinase; PSI-biol 96.1 0.003 1E-07 54.9 3.3 25 118-142 18-42 (202)
96 1ojl_A Transcriptional regulat 96.1 0.0056 1.9E-07 57.1 5.2 45 98-142 2-49 (304)
97 1kht_A Adenylate kinase; phosp 96.1 0.0037 1.3E-07 53.5 3.7 24 119-142 4-27 (192)
98 3iij_A Coilin-interacting nucl 96.0 0.0038 1.3E-07 53.2 3.5 25 118-142 11-35 (180)
99 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0074 2.5E-07 53.2 5.6 25 118-142 23-47 (235)
100 1v5w_A DMC1, meiotic recombina 96.0 0.013 4.4E-07 55.7 7.5 26 117-142 121-146 (343)
101 2jaq_A Deoxyguanosine kinase; 96.0 0.004 1.4E-07 53.9 3.7 23 120-142 2-24 (205)
102 1kgd_A CASK, peripheral plasma 96.0 0.0038 1.3E-07 53.3 3.5 24 119-142 6-29 (180)
103 2zan_A Vacuolar protein sortin 96.0 0.008 2.8E-07 59.2 6.2 45 98-142 134-191 (444)
104 1via_A Shikimate kinase; struc 96.0 0.0038 1.3E-07 52.9 3.3 24 119-142 5-28 (175)
105 1knq_A Gluconate kinase; ALFA/ 96.0 0.0047 1.6E-07 52.2 3.9 25 118-142 8-32 (175)
106 3io5_A Recombination and repai 96.0 0.0059 2E-07 56.9 4.6 85 120-205 30-124 (333)
107 2c95_A Adenylate kinase 1; tra 95.9 0.005 1.7E-07 52.9 4.0 26 117-142 8-33 (196)
108 1tev_A UMP-CMP kinase; ploop, 95.9 0.005 1.7E-07 52.8 3.9 25 118-142 3-27 (196)
109 2ze6_A Isopentenyl transferase 95.9 0.0048 1.6E-07 56.0 3.8 24 119-142 2-25 (253)
110 1zuh_A Shikimate kinase; alpha 95.9 0.0049 1.7E-07 51.8 3.7 26 117-142 6-31 (168)
111 2wsm_A Hydrogenase expression/ 95.9 0.0071 2.4E-07 53.1 4.8 38 105-142 17-54 (221)
112 2iyv_A Shikimate kinase, SK; t 95.9 0.0041 1.4E-07 53.1 3.2 24 119-142 3-26 (184)
113 1odf_A YGR205W, hypothetical 3 95.9 0.0094 3.2E-07 55.2 5.8 27 116-142 29-55 (290)
114 2yvu_A Probable adenylyl-sulfa 95.9 0.0055 1.9E-07 52.5 3.9 26 117-142 12-37 (186)
115 1ixz_A ATP-dependent metallopr 95.9 0.011 3.9E-07 53.2 6.2 45 98-142 16-73 (254)
116 1ukz_A Uridylate kinase; trans 95.8 0.0059 2E-07 53.0 4.0 26 117-142 14-39 (203)
117 1cke_A CK, MSSA, protein (cyti 95.8 0.0053 1.8E-07 54.3 3.7 24 119-142 6-29 (227)
118 2qor_A Guanylate kinase; phosp 95.8 0.0047 1.6E-07 53.9 3.3 26 117-142 11-36 (204)
119 1uf9_A TT1252 protein; P-loop, 95.8 0.006 2.1E-07 52.8 4.0 26 116-141 6-31 (203)
120 1e6c_A Shikimate kinase; phosp 95.8 0.0049 1.7E-07 51.9 3.3 24 119-142 3-26 (173)
121 2plr_A DTMP kinase, probable t 95.8 0.0063 2.2E-07 53.0 4.1 25 118-142 4-28 (213)
122 3cm0_A Adenylate kinase; ATP-b 95.8 0.006 2.1E-07 52.0 3.8 24 119-142 5-28 (186)
123 2r44_A Uncharacterized protein 95.8 0.0076 2.6E-07 56.7 4.9 43 98-142 27-70 (331)
124 1y63_A LMAJ004144AAA protein; 95.8 0.0064 2.2E-07 52.1 4.0 25 117-141 9-33 (184)
125 3tr0_A Guanylate kinase, GMP k 95.8 0.0054 1.9E-07 53.2 3.5 25 118-142 7-31 (205)
126 2bwj_A Adenylate kinase 5; pho 95.8 0.0058 2E-07 52.7 3.7 25 118-142 12-36 (199)
127 2j41_A Guanylate kinase; GMP, 95.8 0.0064 2.2E-07 52.8 3.9 25 118-142 6-30 (207)
128 2if2_A Dephospho-COA kinase; a 95.8 0.0055 1.9E-07 53.2 3.4 22 119-140 2-23 (204)
129 2z43_A DNA repair and recombin 95.8 0.013 4.4E-07 55.1 6.2 84 117-201 106-212 (324)
130 3asz_A Uridine kinase; cytidin 95.8 0.0063 2.2E-07 53.2 3.8 26 117-142 5-30 (211)
131 2bdt_A BH3686; alpha-beta prot 95.8 0.0061 2.1E-07 52.3 3.7 24 119-142 3-26 (189)
132 2ga8_A Hypothetical 39.9 kDa p 95.7 0.013 4.4E-07 55.5 6.1 42 101-142 2-48 (359)
133 1u94_A RECA protein, recombina 95.7 0.0057 1.9E-07 58.4 3.7 84 117-203 62-152 (356)
134 2kjq_A DNAA-related protein; s 95.7 0.0072 2.4E-07 50.0 3.9 26 117-142 35-60 (149)
135 3tau_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 53.3 3.7 26 117-142 7-32 (208)
136 2vli_A Antibiotic resistance p 95.7 0.0044 1.5E-07 52.7 2.6 25 118-142 5-29 (183)
137 2pbr_A DTMP kinase, thymidylat 95.7 0.0066 2.2E-07 52.0 3.7 23 120-142 2-24 (195)
138 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0068 2.3E-07 55.1 4.0 25 118-142 4-28 (260)
139 1sky_E F1-ATPase, F1-ATP synth 95.7 0.012 4.2E-07 57.8 6.0 24 119-142 152-175 (473)
140 2c9o_A RUVB-like 1; hexameric 95.7 0.011 3.7E-07 58.5 5.7 45 98-142 37-87 (456)
141 1qf9_A UMP/CMP kinase, protein 95.7 0.0069 2.4E-07 51.8 3.8 25 118-142 6-30 (194)
142 1uj2_A Uridine-cytidine kinase 95.7 0.007 2.4E-07 54.7 4.0 27 116-142 20-46 (252)
143 2pt5_A Shikimate kinase, SK; a 95.7 0.0068 2.3E-07 50.7 3.7 23 120-142 2-24 (168)
144 2bbw_A Adenylate kinase 4, AK4 95.7 0.007 2.4E-07 54.4 3.9 26 117-142 26-51 (246)
145 2cdn_A Adenylate kinase; phosp 95.7 0.0077 2.6E-07 52.2 4.0 26 117-142 19-44 (201)
146 1g8p_A Magnesium-chelatase 38 95.7 0.0055 1.9E-07 57.9 3.3 45 98-142 24-69 (350)
147 2qt1_A Nicotinamide riboside k 95.7 0.0068 2.3E-07 52.8 3.7 26 117-142 20-45 (207)
148 3hws_A ATP-dependent CLP prote 95.7 0.011 3.8E-07 56.4 5.5 44 99-142 16-75 (363)
149 1vma_A Cell division protein F 95.6 0.014 4.7E-07 54.5 5.9 38 105-142 83-128 (306)
150 3umf_A Adenylate kinase; rossm 95.6 0.0084 2.9E-07 53.0 4.1 27 116-142 27-53 (217)
151 1nn5_A Similar to deoxythymidy 95.6 0.0082 2.8E-07 52.4 4.1 26 117-142 8-33 (215)
152 1ye8_A Protein THEP1, hypothet 95.6 0.0077 2.6E-07 51.5 3.7 23 120-142 2-24 (178)
153 3fwy_A Light-independent proto 95.6 0.0072 2.4E-07 56.7 3.7 27 116-142 46-72 (314)
154 4gp7_A Metallophosphoesterase; 95.6 0.0057 1.9E-07 51.8 2.8 23 117-139 8-30 (171)
155 1aky_A Adenylate kinase; ATP:A 95.6 0.0082 2.8E-07 52.9 3.9 25 118-142 4-28 (220)
156 2wwf_A Thymidilate kinase, put 95.6 0.0082 2.8E-07 52.3 3.9 25 118-142 10-34 (212)
157 1iy2_A ATP-dependent metallopr 95.6 0.015 5.3E-07 53.2 5.9 45 98-142 40-97 (278)
158 3a00_A Guanylate kinase, GMP k 95.5 0.0065 2.2E-07 52.1 3.0 24 119-142 2-25 (186)
159 2grj_A Dephospho-COA kinase; T 95.5 0.0095 3.3E-07 51.6 4.0 27 116-142 10-36 (192)
160 1jjv_A Dephospho-COA kinase; P 95.5 0.0073 2.5E-07 52.6 3.3 22 119-140 3-24 (206)
161 1gvn_B Zeta; postsegregational 95.5 0.013 4.4E-07 54.2 5.1 26 117-142 32-57 (287)
162 1ex7_A Guanylate kinase; subst 95.5 0.0073 2.5E-07 52.0 3.2 24 119-142 2-25 (186)
163 1xjc_A MOBB protein homolog; s 95.5 0.0094 3.2E-07 50.4 3.8 26 117-142 3-28 (169)
164 1um8_A ATP-dependent CLP prote 95.5 0.016 5.5E-07 55.6 5.9 45 98-142 21-96 (376)
165 1gtv_A TMK, thymidylate kinase 95.5 0.0046 1.6E-07 54.0 1.9 24 119-142 1-24 (214)
166 1lvg_A Guanylate kinase, GMP k 95.5 0.0077 2.6E-07 52.3 3.3 25 118-142 4-28 (198)
167 3tlx_A Adenylate kinase 2; str 95.5 0.019 6.6E-07 51.5 6.0 27 116-142 27-53 (243)
168 3ice_A Transcription terminati 95.5 0.024 8.2E-07 54.3 6.8 102 108-210 163-280 (422)
169 3bh0_A DNAB-like replicative h 95.5 0.023 7.7E-07 53.3 6.7 59 102-165 54-118 (315)
170 1zd8_A GTP:AMP phosphotransfer 95.4 0.0086 2.9E-07 53.1 3.5 25 118-142 7-31 (227)
171 1zak_A Adenylate kinase; ATP:A 95.4 0.0088 3E-07 52.8 3.6 26 117-142 4-29 (222)
172 2gno_A DNA polymerase III, gam 95.4 0.042 1.4E-06 51.2 8.4 38 105-142 5-42 (305)
173 4e22_A Cytidylate kinase; P-lo 95.4 0.01 3.5E-07 53.7 4.0 26 117-142 26-51 (252)
174 3fb4_A Adenylate kinase; psych 95.4 0.01 3.5E-07 52.0 3.7 23 120-142 2-24 (216)
175 2z0h_A DTMP kinase, thymidylat 95.4 0.01 3.6E-07 50.9 3.7 23 120-142 2-24 (197)
176 2ck3_D ATP synthase subunit be 95.3 0.06 2.1E-06 52.9 9.4 95 108-204 142-265 (482)
177 3dm5_A SRP54, signal recogniti 95.3 0.031 1.1E-06 54.7 7.4 26 117-142 99-124 (443)
178 2p5t_B PEZT; postsegregational 95.3 0.013 4.5E-07 52.9 4.5 26 117-142 31-56 (253)
179 1m7g_A Adenylylsulfate kinase; 95.3 0.019 6.5E-07 50.2 5.4 27 116-142 23-49 (211)
180 2v54_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 51.3 3.6 25 118-142 4-28 (204)
181 3kl4_A SRP54, signal recogniti 95.3 0.034 1.2E-06 54.4 7.5 26 117-142 96-121 (433)
182 4a1f_A DNAB helicase, replicat 95.3 0.067 2.3E-06 50.5 9.3 39 102-142 32-70 (338)
183 2jeo_A Uridine-cytidine kinase 95.3 0.012 4.2E-07 52.8 4.0 27 116-142 23-49 (245)
184 2ffh_A Protein (FFH); SRP54, s 95.3 0.028 9.6E-07 54.8 6.8 26 117-142 97-122 (425)
185 3ney_A 55 kDa erythrocyte memb 95.2 0.012 4.1E-07 51.1 3.7 26 117-142 18-43 (197)
186 3aez_A Pantothenate kinase; tr 95.2 0.012 4.2E-07 55.0 4.0 26 117-142 89-114 (312)
187 3dl0_A Adenylate kinase; phosp 95.2 0.011 3.9E-07 51.7 3.5 23 120-142 2-24 (216)
188 2pez_A Bifunctional 3'-phospho 95.2 0.013 4.6E-07 49.6 3.8 25 118-142 5-29 (179)
189 1znw_A Guanylate kinase, GMP k 95.2 0.012 4E-07 51.4 3.5 26 117-142 19-44 (207)
190 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.015 5E-07 58.1 4.6 43 98-142 22-65 (500)
191 1vht_A Dephospho-COA kinase; s 95.2 0.014 4.8E-07 51.3 4.0 23 118-140 4-26 (218)
192 1tue_A Replication protein E1; 95.1 0.019 6.6E-07 50.0 4.6 38 105-142 44-82 (212)
193 1z6g_A Guanylate kinase; struc 95.1 0.011 3.8E-07 52.2 3.1 26 117-142 22-47 (218)
194 1fx0_B ATP synthase beta chain 95.1 0.035 1.2E-06 54.8 6.9 94 109-204 155-278 (498)
195 3ake_A Cytidylate kinase; CMP 95.0 0.015 5E-07 50.5 3.7 23 120-142 4-26 (208)
196 1g41_A Heat shock protein HSLU 95.0 0.021 7.1E-07 56.0 5.1 45 98-142 15-74 (444)
197 3nwj_A ATSK2; P loop, shikimat 95.0 0.013 4.3E-07 53.1 3.3 25 118-142 48-72 (250)
198 1rj9_A FTSY, signal recognitio 95.0 0.016 5.5E-07 54.0 4.0 26 117-142 101-126 (304)
199 2f6r_A COA synthase, bifunctio 95.0 0.015 5.1E-07 53.5 3.8 24 117-140 74-97 (281)
200 1htw_A HI0065; nucleotide-bind 95.0 0.016 5.6E-07 48.4 3.7 27 116-142 31-57 (158)
201 3be4_A Adenylate kinase; malar 95.0 0.015 5.3E-07 51.1 3.7 24 119-142 6-29 (217)
202 3r20_A Cytidylate kinase; stru 94.9 0.017 5.8E-07 51.6 3.8 25 118-142 9-33 (233)
203 1e4v_A Adenylate kinase; trans 94.9 0.016 5.6E-07 50.7 3.7 23 120-142 2-24 (214)
204 3e70_C DPA, signal recognition 94.9 0.028 9.5E-07 52.9 5.5 26 117-142 128-153 (328)
205 1ak2_A Adenylate kinase isoenz 94.9 0.019 6.4E-07 51.1 4.1 25 118-142 16-40 (233)
206 2i1q_A DNA repair and recombin 94.9 0.028 9.7E-07 52.6 5.5 26 117-142 97-122 (322)
207 2xb4_A Adenylate kinase; ATP-b 94.9 0.017 5.7E-07 51.1 3.7 23 120-142 2-24 (223)
208 2f1r_A Molybdopterin-guanine d 94.9 0.01 3.5E-07 50.3 2.2 24 119-142 3-26 (171)
209 2i3b_A HCR-ntpase, human cance 94.8 0.016 5.4E-07 50.0 3.3 24 119-142 2-25 (189)
210 4a74_A DNA repair and recombin 94.8 0.017 5.8E-07 50.9 3.4 26 117-142 24-49 (231)
211 3cf2_A TER ATPase, transitiona 94.8 0.064 2.2E-06 56.5 8.3 90 98-203 477-581 (806)
212 2px0_A Flagellar biosynthesis 94.8 0.02 6.8E-07 53.2 4.0 26 117-142 104-129 (296)
213 3tqc_A Pantothenate kinase; bi 94.8 0.02 6.8E-07 53.7 4.0 26 117-142 91-116 (321)
214 1s96_A Guanylate kinase, GMP k 94.8 0.018 6.1E-07 51.0 3.5 26 117-142 15-40 (219)
215 3sr0_A Adenylate kinase; phosp 94.7 0.02 6.8E-07 50.1 3.7 23 120-142 2-24 (206)
216 2ehv_A Hypothetical protein PH 94.7 0.017 5.7E-07 51.6 3.3 24 117-140 29-52 (251)
217 3d3q_A TRNA delta(2)-isopenten 94.7 0.019 6.6E-07 54.1 3.8 24 119-142 8-31 (340)
218 3b9q_A Chloroplast SRP recepto 94.7 0.022 7.5E-07 53.0 4.1 25 118-142 100-124 (302)
219 1sq5_A Pantothenate kinase; P- 94.7 0.021 7.1E-07 53.3 4.0 27 116-142 78-104 (308)
220 2yhs_A FTSY, cell division pro 94.7 0.039 1.3E-06 54.7 6.0 26 117-142 292-317 (503)
221 1j8m_F SRP54, signal recogniti 94.7 0.041 1.4E-06 51.0 5.9 25 118-142 98-122 (297)
222 1np6_A Molybdopterin-guanine d 94.7 0.022 7.6E-07 48.4 3.8 25 118-142 6-30 (174)
223 3lda_A DNA repair protein RAD5 94.6 0.051 1.8E-06 52.6 6.7 25 117-141 177-201 (400)
224 2onk_A Molybdate/tungstate ABC 94.6 0.021 7.1E-07 51.3 3.5 26 116-142 23-48 (240)
225 3lnc_A Guanylate kinase, GMP k 94.6 0.013 4.4E-07 52.1 2.1 25 118-142 27-52 (231)
226 2xxa_A Signal recognition part 94.5 0.036 1.2E-06 54.3 5.4 38 105-142 78-124 (433)
227 3bgw_A DNAB-like replicative h 94.5 0.048 1.6E-06 53.6 6.3 26 117-142 196-221 (444)
228 1a7j_A Phosphoribulokinase; tr 94.5 0.014 4.8E-07 54.0 2.2 26 117-142 4-29 (290)
229 3crm_A TRNA delta(2)-isopenten 94.5 0.023 7.9E-07 53.2 3.7 24 119-142 6-29 (323)
230 1ltq_A Polynucleotide kinase; 94.4 0.023 7.9E-07 52.5 3.6 23 119-141 3-25 (301)
231 3end_A Light-independent proto 94.4 0.026 8.8E-07 52.5 3.9 27 116-142 39-65 (307)
232 3p32_A Probable GTPase RV1496/ 94.4 0.052 1.8E-06 51.6 6.0 37 106-142 65-103 (355)
233 3tif_A Uncharacterized ABC tra 94.3 0.023 7.7E-07 50.9 3.2 26 117-142 30-55 (235)
234 2og2_A Putative signal recogni 94.3 0.03 1E-06 53.4 4.1 25 118-142 157-181 (359)
235 2pcj_A ABC transporter, lipopr 94.3 0.02 6.9E-07 50.8 2.8 25 118-142 30-54 (224)
236 3b85_A Phosphate starvation-in 94.3 0.02 7E-07 50.1 2.7 23 119-141 23-45 (208)
237 3a8t_A Adenylate isopentenyltr 94.3 0.026 9E-07 53.1 3.6 26 117-142 39-64 (339)
238 1yrb_A ATP(GTP)binding protein 94.3 0.032 1.1E-06 50.3 4.1 26 117-142 13-38 (262)
239 3exa_A TRNA delta(2)-isopenten 94.2 0.03 1E-06 52.1 3.8 25 118-142 3-27 (322)
240 3upu_A ATP-dependent DNA helic 94.2 0.061 2.1E-06 53.1 6.3 37 105-142 33-69 (459)
241 3zvl_A Bifunctional polynucleo 94.2 0.024 8.2E-07 55.3 3.3 26 117-142 257-282 (416)
242 1q3t_A Cytidylate kinase; nucl 94.2 0.034 1.2E-06 49.5 4.1 26 117-142 15-40 (236)
243 4eaq_A DTMP kinase, thymidylat 94.2 0.037 1.3E-06 49.2 4.2 26 117-142 25-50 (229)
244 2cbz_A Multidrug resistance-as 94.1 0.024 8.1E-07 50.8 2.8 26 117-142 30-55 (237)
245 1zu4_A FTSY; GTPase, signal re 94.1 0.036 1.2E-06 52.0 4.2 26 117-142 104-129 (320)
246 3k1j_A LON protease, ATP-depen 94.1 0.029 9.8E-07 57.6 3.8 43 98-142 41-84 (604)
247 2d2e_A SUFC protein; ABC-ATPas 94.1 0.029 1E-06 50.6 3.4 24 118-141 29-52 (250)
248 2ocp_A DGK, deoxyguanosine kin 94.0 0.034 1.2E-06 49.6 3.8 25 118-142 2-26 (241)
249 3vr4_D V-type sodium ATPase su 94.0 0.031 1.1E-06 54.6 3.7 24 119-142 152-175 (465)
250 4gzl_A RAS-related C3 botulinu 94.0 0.033 1.1E-06 48.2 3.5 41 102-142 13-54 (204)
251 1b0u_A Histidine permease; ABC 94.0 0.025 8.6E-07 51.5 2.8 26 117-142 31-56 (262)
252 3gfo_A Cobalt import ATP-bindi 94.0 0.029 9.8E-07 51.5 3.2 25 118-142 34-58 (275)
253 1ji0_A ABC transporter; ATP bi 93.9 0.027 9.2E-07 50.5 2.8 25 118-142 32-56 (240)
254 2j37_W Signal recognition part 93.9 0.053 1.8E-06 54.1 5.2 26 117-142 100-125 (504)
255 3gmt_A Adenylate kinase; ssgci 93.9 0.085 2.9E-06 46.8 6.0 26 117-142 7-32 (230)
256 2zu0_C Probable ATP-dependent 93.9 0.032 1.1E-06 50.9 3.3 26 116-141 44-69 (267)
257 4g1u_C Hemin import ATP-bindin 93.9 0.027 9.1E-07 51.4 2.8 26 117-142 36-61 (266)
258 3foz_A TRNA delta(2)-isopenten 93.9 0.037 1.3E-06 51.4 3.7 26 117-142 9-34 (316)
259 2pze_A Cystic fibrosis transme 93.9 0.027 9.4E-07 50.1 2.8 25 118-142 34-58 (229)
260 1mv5_A LMRA, multidrug resista 93.9 0.029 9.8E-07 50.4 3.0 26 117-142 27-52 (243)
261 1oix_A RAS-related protein RAB 93.9 0.035 1.2E-06 47.5 3.4 25 118-142 29-53 (191)
262 1g6h_A High-affinity branched- 93.9 0.027 9.4E-07 51.0 2.8 25 118-142 33-57 (257)
263 1sgw_A Putative ABC transporte 93.8 0.025 8.5E-07 49.8 2.4 25 118-142 35-59 (214)
264 2olj_A Amino acid ABC transpor 93.8 0.028 9.7E-07 51.1 2.8 27 116-142 48-74 (263)
265 2dyk_A GTP-binding protein; GT 93.8 0.04 1.4E-06 45.1 3.5 24 119-142 2-25 (161)
266 2ff7_A Alpha-hemolysin translo 93.8 0.029 1E-06 50.5 2.8 25 118-142 35-59 (247)
267 2eyu_A Twitching motility prot 93.8 0.062 2.1E-06 48.8 5.0 27 116-142 23-49 (261)
268 3m6a_A ATP-dependent protease 93.8 0.062 2.1E-06 54.3 5.5 45 98-142 81-132 (543)
269 1nlf_A Regulatory protein REPA 93.7 0.035 1.2E-06 50.8 3.3 25 118-142 30-54 (279)
270 2ghi_A Transport protein; mult 93.7 0.031 1.1E-06 50.8 2.8 26 117-142 45-70 (260)
271 2v9p_A Replication protein E1; 93.7 0.042 1.4E-06 51.1 3.7 27 116-142 124-150 (305)
272 1vpl_A ABC transporter, ATP-bi 93.7 0.031 1.1E-06 50.7 2.8 26 117-142 40-65 (256)
273 2ixe_A Antigen peptide transpo 93.7 0.032 1.1E-06 51.1 2.8 27 116-142 43-69 (271)
274 3pxi_A Negative regulator of g 93.7 0.076 2.6E-06 55.9 6.2 45 98-142 491-545 (758)
275 1cr0_A DNA primase/helicase; R 93.6 0.042 1.5E-06 50.7 3.7 26 117-142 34-59 (296)
276 2vp4_A Deoxynucleoside kinase; 93.6 0.029 1E-06 49.8 2.4 25 117-141 19-43 (230)
277 2f9l_A RAB11B, member RAS onco 93.6 0.041 1.4E-06 47.3 3.3 25 118-142 5-29 (199)
278 2q6t_A DNAB replication FORK h 93.6 0.15 5.1E-06 50.1 7.7 46 117-164 199-250 (444)
279 2qi9_C Vitamin B12 import ATP- 93.6 0.034 1.2E-06 50.2 2.8 25 118-142 26-50 (249)
280 2yz2_A Putative ABC transporte 93.6 0.034 1.2E-06 50.7 2.8 26 117-142 32-57 (266)
281 1ls1_A Signal recognition part 93.5 0.05 1.7E-06 50.4 4.0 26 117-142 97-122 (295)
282 2ihy_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 51.0 2.8 26 117-142 46-71 (279)
283 2ce2_X GTPase HRAS; signaling 93.5 0.041 1.4E-06 45.0 3.0 23 120-142 5-27 (166)
284 2nq2_C Hypothetical ABC transp 93.5 0.035 1.2E-06 50.2 2.8 25 118-142 31-55 (253)
285 2wji_A Ferrous iron transport 93.4 0.051 1.7E-06 45.1 3.5 23 119-141 4-26 (165)
286 1cp2_A CP2, nitrogenase iron p 93.4 0.048 1.7E-06 49.4 3.6 24 119-142 2-25 (269)
287 2qmh_A HPR kinase/phosphorylas 93.4 0.042 1.4E-06 47.6 2.9 25 118-142 34-58 (205)
288 1svm_A Large T antigen; AAA+ f 93.4 0.051 1.7E-06 52.1 3.8 27 116-142 167-193 (377)
289 2v3c_C SRP54, signal recogniti 93.3 0.037 1.3E-06 54.2 2.9 25 118-142 99-123 (432)
290 1nij_A Hypothetical protein YJ 93.3 0.044 1.5E-06 51.3 3.3 26 117-142 3-28 (318)
291 2h92_A Cytidylate kinase; ross 93.3 0.047 1.6E-06 47.8 3.3 24 119-142 4-27 (219)
292 2zej_A Dardarin, leucine-rich 93.3 0.043 1.5E-06 46.5 2.9 22 120-141 4-25 (184)
293 1z2a_A RAS-related protein RAB 93.3 0.05 1.7E-06 44.8 3.3 25 118-142 5-29 (168)
294 2dr3_A UPF0273 protein PH0284; 93.2 0.054 1.9E-06 48.1 3.7 25 118-142 23-47 (247)
295 2afh_E Nitrogenase iron protei 93.2 0.06 2E-06 49.4 4.0 25 118-142 2-26 (289)
296 3sop_A Neuronal-specific septi 93.2 0.05 1.7E-06 49.7 3.4 23 120-142 4-26 (270)
297 3eph_A TRNA isopentenyltransfe 93.2 0.054 1.8E-06 52.2 3.7 24 119-142 3-26 (409)
298 2axn_A 6-phosphofructo-2-kinas 93.2 0.06 2E-06 54.0 4.2 26 117-142 34-59 (520)
299 1g8f_A Sulfate adenylyltransfe 93.2 0.097 3.3E-06 52.2 5.6 38 105-142 380-419 (511)
300 1p5z_B DCK, deoxycytidine kina 93.2 0.029 1E-06 50.8 1.7 26 117-142 23-48 (263)
301 3con_A GTPase NRAS; structural 93.1 0.049 1.7E-06 46.2 3.1 24 119-142 22-45 (190)
302 1q57_A DNA primase/helicase; d 93.1 0.15 5.3E-06 50.8 7.2 45 118-164 242-292 (503)
303 1zj6_A ADP-ribosylation factor 93.1 0.092 3.2E-06 44.4 4.8 34 108-142 7-40 (187)
304 2wjg_A FEOB, ferrous iron tran 93.1 0.058 2E-06 45.6 3.4 23 119-141 8-30 (188)
305 2ged_A SR-beta, signal recogni 93.1 0.064 2.2E-06 45.6 3.7 26 117-142 47-72 (193)
306 3fdi_A Uncharacterized protein 93.0 0.062 2.1E-06 46.7 3.6 24 119-142 7-30 (201)
307 2pjz_A Hypothetical protein ST 93.0 0.046 1.6E-06 49.7 2.8 23 118-140 30-52 (263)
308 3cmu_A Protein RECA, recombina 93.0 0.091 3.1E-06 60.4 5.7 81 116-202 1425-1515(2050)
309 1u8z_A RAS-related protein RAL 93.0 0.055 1.9E-06 44.4 3.1 24 119-142 5-28 (168)
310 2orw_A Thymidine kinase; TMTK, 93.0 0.067 2.3E-06 45.7 3.7 24 119-142 4-27 (184)
311 3io3_A DEHA2D07832P; chaperone 93.0 0.064 2.2E-06 50.9 3.8 32 111-142 11-42 (348)
312 3nh6_A ATP-binding cassette SU 92.9 0.041 1.4E-06 51.2 2.3 27 116-142 78-104 (306)
313 1r6b_X CLPA protein; AAA+, N-t 92.8 0.12 4.2E-06 54.3 6.2 45 98-142 458-512 (758)
314 1c1y_A RAS-related protein RAP 92.8 0.065 2.2E-06 44.0 3.3 23 120-142 5-27 (167)
315 1r8s_A ADP-ribosylation factor 92.8 0.069 2.4E-06 43.9 3.4 23 120-142 2-24 (164)
316 1kao_A RAP2A; GTP-binding prot 92.8 0.066 2.3E-06 43.9 3.3 24 119-142 4-27 (167)
317 1nrj_B SR-beta, signal recogni 92.8 0.073 2.5E-06 46.3 3.7 27 116-142 10-36 (218)
318 1ek0_A Protein (GTP-binding pr 92.8 0.062 2.1E-06 44.2 3.1 23 120-142 5-27 (170)
319 1z08_A RAS-related protein RAB 92.7 0.062 2.1E-06 44.4 3.0 24 119-142 7-30 (170)
320 3ld9_A DTMP kinase, thymidylat 92.7 0.092 3.1E-06 46.4 4.2 27 116-142 19-45 (223)
321 1moz_A ARL1, ADP-ribosylation 92.7 0.073 2.5E-06 44.7 3.5 26 116-141 16-41 (183)
322 2lkc_A Translation initiation 92.7 0.073 2.5E-06 44.4 3.5 26 117-142 7-32 (178)
323 1z0j_A RAB-22, RAS-related pro 92.7 0.064 2.2E-06 44.2 3.1 24 119-142 7-30 (170)
324 1m7b_A RND3/RHOE small GTP-bin 92.7 0.062 2.1E-06 45.4 3.0 25 118-142 7-31 (184)
325 4edh_A DTMP kinase, thymidylat 92.7 0.082 2.8E-06 46.4 3.9 25 118-142 6-30 (213)
326 2bbs_A Cystic fibrosis transme 92.7 0.054 1.8E-06 50.0 2.8 27 116-142 62-88 (290)
327 1a5t_A Delta prime, HOLB; zinc 92.7 0.12 4E-06 48.7 5.2 38 105-142 10-48 (334)
328 2nzj_A GTP-binding protein REM 92.7 0.065 2.2E-06 44.5 3.1 25 118-142 4-28 (175)
329 2erx_A GTP-binding protein DI- 92.6 0.062 2.1E-06 44.4 2.9 24 119-142 4-27 (172)
330 3fvq_A Fe(3+) IONS import ATP- 92.6 0.063 2.2E-06 51.0 3.3 26 117-142 29-54 (359)
331 1pzn_A RAD51, DNA repair and r 92.6 0.067 2.3E-06 50.8 3.4 27 116-142 129-155 (349)
332 2gj8_A MNME, tRNA modification 92.6 0.063 2.1E-06 45.0 2.9 24 119-142 5-28 (172)
333 1tq4_A IIGP1, interferon-induc 92.6 0.092 3.1E-06 51.0 4.4 26 116-141 67-92 (413)
334 3kta_A Chromosome segregation 92.6 0.072 2.5E-06 45.0 3.3 24 119-142 27-50 (182)
335 1ky3_A GTP-binding protein YPT 92.5 0.067 2.3E-06 44.7 3.1 26 117-142 7-32 (182)
336 1lw7_A Transcriptional regulat 92.5 0.071 2.4E-06 50.9 3.5 25 118-142 170-194 (365)
337 3ihw_A Centg3; RAS, centaurin, 92.5 0.067 2.3E-06 45.4 3.1 25 118-142 20-44 (184)
338 3tui_C Methionine import ATP-b 92.5 0.068 2.3E-06 50.9 3.3 27 116-142 52-78 (366)
339 1svi_A GTP-binding protein YSX 92.5 0.071 2.4E-06 45.3 3.2 25 117-141 22-46 (195)
340 3q85_A GTP-binding protein REM 92.5 0.071 2.4E-06 44.0 3.1 22 119-140 3-24 (169)
341 3t1o_A Gliding protein MGLA; G 92.5 0.072 2.5E-06 45.2 3.2 24 119-142 15-38 (198)
342 3q72_A GTP-binding protein RAD 92.5 0.066 2.3E-06 44.1 2.9 21 120-140 4-24 (166)
343 3jvv_A Twitching mobility prot 92.5 0.12 4E-06 49.2 4.9 90 116-209 121-213 (356)
344 1qvr_A CLPB protein; coiled co 92.5 0.088 3E-06 56.3 4.5 44 99-142 559-612 (854)
345 2fn4_A P23, RAS-related protei 92.5 0.069 2.3E-06 44.6 3.0 25 118-142 9-33 (181)
346 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.07 2.4E-06 44.4 3.1 25 118-142 7-31 (177)
347 2hxs_A RAB-26, RAS-related pro 92.4 0.075 2.5E-06 44.3 3.2 24 119-142 7-30 (178)
348 2r8r_A Sensor protein; KDPD, P 92.4 0.081 2.8E-06 46.8 3.5 23 120-142 8-30 (228)
349 1g16_A RAS-related protein SEC 92.4 0.071 2.4E-06 44.0 3.0 24 119-142 4-27 (170)
350 1p9r_A General secretion pathw 92.4 0.13 4.6E-06 49.9 5.4 34 108-142 158-191 (418)
351 1fzq_A ADP-ribosylation factor 92.4 0.099 3.4E-06 44.1 4.0 26 116-141 14-39 (181)
352 3gqb_B V-type ATP synthase bet 92.4 0.069 2.4E-06 52.1 3.2 24 119-142 148-171 (464)
353 1z47_A CYSA, putative ABC-tran 92.4 0.073 2.5E-06 50.6 3.4 25 118-142 41-65 (355)
354 2www_A Methylmalonic aciduria 92.4 0.089 3E-06 49.9 4.0 26 117-142 73-98 (349)
355 1bif_A 6-phosphofructo-2-kinas 92.4 0.087 3E-06 52.1 4.1 26 117-142 38-63 (469)
356 1u0j_A DNA replication protein 92.4 0.15 5.1E-06 46.2 5.3 37 106-142 90-128 (267)
357 2yv5_A YJEQ protein; hydrolase 92.4 0.12 4E-06 48.0 4.7 33 106-142 156-188 (302)
358 1r2q_A RAS-related protein RAB 92.4 0.08 2.7E-06 43.6 3.3 24 119-142 7-30 (170)
359 3ch4_B Pmkase, phosphomevalona 92.4 0.11 3.8E-06 45.0 4.2 26 117-142 10-35 (202)
360 3cmw_A Protein RECA, recombina 92.3 0.12 4.2E-06 58.5 5.5 82 117-204 731-822 (1706)
361 3c5c_A RAS-like protein 12; GD 92.3 0.076 2.6E-06 45.1 3.1 25 118-142 21-45 (187)
362 4dsu_A GTPase KRAS, isoform 2B 92.3 0.076 2.6E-06 44.7 3.1 24 119-142 5-28 (189)
363 3pqc_A Probable GTP-binding pr 92.3 0.08 2.7E-06 44.8 3.2 26 117-142 22-47 (195)
364 1z0f_A RAB14, member RAS oncog 92.3 0.078 2.7E-06 44.1 3.1 25 118-142 15-39 (179)
365 4hlc_A DTMP kinase, thymidylat 92.3 0.12 4E-06 45.1 4.3 24 119-142 3-26 (205)
366 3kkq_A RAS-related protein M-R 92.2 0.078 2.7E-06 44.5 3.1 25 118-142 18-42 (183)
367 3oaa_A ATP synthase subunit al 92.2 0.21 7.3E-06 49.2 6.4 34 109-142 152-187 (513)
368 1m2o_B GTP-binding protein SAR 92.2 0.083 2.9E-06 45.0 3.2 25 118-142 23-47 (190)
369 2yyz_A Sugar ABC transporter, 92.2 0.08 2.7E-06 50.4 3.4 26 117-142 28-53 (359)
370 3rlf_A Maltose/maltodextrin im 92.2 0.08 2.7E-06 50.8 3.3 26 117-142 28-53 (381)
371 3lv8_A DTMP kinase, thymidylat 92.1 0.096 3.3E-06 46.7 3.7 25 118-142 27-51 (236)
372 2c61_A A-type ATP synthase non 92.1 0.1 3.5E-06 51.2 4.1 34 109-142 142-176 (469)
373 2bme_A RAB4A, RAS-related prot 92.1 0.081 2.8E-06 44.5 3.0 25 118-142 10-34 (186)
374 3cr8_A Sulfate adenylyltranfer 92.1 0.069 2.3E-06 53.9 3.0 26 117-142 368-393 (552)
375 3cmu_A Protein RECA, recombina 92.1 0.1 3.5E-06 60.0 4.6 81 117-203 382-472 (2050)
376 3v9p_A DTMP kinase, thymidylat 92.1 0.075 2.6E-06 47.2 2.9 25 118-142 25-49 (227)
377 2qm8_A GTPase/ATPase; G protei 92.1 0.098 3.4E-06 49.4 3.9 27 116-142 53-79 (337)
378 2it1_A 362AA long hypothetical 92.1 0.083 2.8E-06 50.3 3.3 26 117-142 28-53 (362)
379 1f6b_A SAR1; gtpases, N-termin 92.0 0.13 4.3E-06 44.2 4.2 25 117-141 24-48 (198)
380 1m8p_A Sulfate adenylyltransfe 92.0 0.11 3.6E-06 52.9 4.2 26 117-142 395-420 (573)
381 3iqw_A Tail-anchored protein t 92.0 0.1 3.5E-06 49.2 3.9 31 112-142 10-40 (334)
382 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.086 2.9E-06 44.2 3.1 24 119-142 6-29 (186)
383 2y8e_A RAB-protein 6, GH09086P 92.0 0.085 2.9E-06 43.9 3.0 24 119-142 15-38 (179)
384 3bc1_A RAS-related protein RAB 92.0 0.092 3.1E-06 44.3 3.3 25 118-142 11-35 (195)
385 2a9k_A RAS-related protein RAL 92.0 0.087 3E-06 44.2 3.1 25 118-142 18-42 (187)
386 1g29_1 MALK, maltose transport 92.0 0.086 2.9E-06 50.5 3.4 24 118-141 29-52 (372)
387 1v43_A Sugar-binding transport 91.9 0.087 3E-06 50.4 3.3 26 117-142 36-61 (372)
388 3bwd_D RAC-like GTP-binding pr 91.9 0.089 3.1E-06 44.0 3.1 25 118-142 8-32 (182)
389 3f9v_A Minichromosome maintena 91.9 0.051 1.7E-06 55.5 1.8 45 98-142 295-351 (595)
390 3t5g_A GTP-binding protein RHE 91.9 0.088 3E-06 44.1 3.0 25 118-142 6-30 (181)
391 2ewv_A Twitching motility prot 91.9 0.11 3.8E-06 49.7 4.1 27 116-142 134-160 (372)
392 2iwr_A Centaurin gamma 1; ANK 91.9 0.066 2.3E-06 44.7 2.2 24 119-142 8-31 (178)
393 3dz8_A RAS-related protein RAB 91.9 0.097 3.3E-06 44.4 3.3 25 118-142 23-47 (191)
394 2efe_B Small GTP-binding prote 91.9 0.088 3E-06 44.0 3.0 24 119-142 13-36 (181)
395 2cxx_A Probable GTP-binding pr 91.9 0.078 2.7E-06 44.7 2.7 23 120-142 3-25 (190)
396 1upt_A ARL1, ADP-ribosylation 91.9 0.12 4E-06 42.7 3.7 25 118-142 7-31 (171)
397 2oil_A CATX-8, RAS-related pro 91.9 0.096 3.3E-06 44.5 3.3 25 118-142 25-49 (193)
398 2p67_A LAO/AO transport system 91.9 0.11 3.7E-06 49.1 3.9 27 116-142 54-80 (341)
399 2bov_A RAla, RAS-related prote 91.9 0.09 3.1E-06 45.0 3.1 25 118-142 14-38 (206)
400 3tw8_B RAS-related protein RAB 91.9 0.087 3E-06 43.9 2.9 26 117-142 8-33 (181)
401 3cbq_A GTP-binding protein REM 91.8 0.072 2.5E-06 45.7 2.4 24 117-140 22-45 (195)
402 1x6v_B Bifunctional 3'-phospho 91.8 0.11 3.8E-06 53.1 4.1 26 117-142 51-76 (630)
403 2cjw_A GTP-binding protein GEM 91.8 0.1 3.5E-06 44.6 3.4 24 118-141 6-29 (192)
404 2g6b_A RAS-related protein RAB 91.8 0.095 3.3E-06 43.7 3.1 24 119-142 11-34 (180)
405 1vg8_A RAS-related protein RAB 91.8 0.093 3.2E-06 45.0 3.1 26 117-142 7-32 (207)
406 3d31_A Sulfate/molybdate ABC t 91.7 0.073 2.5E-06 50.5 2.5 26 117-142 25-50 (348)
407 4dzz_A Plasmid partitioning pr 91.7 0.11 3.7E-06 44.7 3.4 24 119-142 2-26 (206)
408 2atv_A RERG, RAS-like estrogen 91.7 0.12 4.1E-06 44.1 3.7 27 116-142 26-52 (196)
409 2gza_A Type IV secretion syste 91.7 0.078 2.7E-06 50.6 2.7 26 117-142 174-199 (361)
410 1gwn_A RHO-related GTP-binding 91.6 0.096 3.3E-06 45.4 3.0 26 117-142 27-52 (205)
411 4tmk_A Protein (thymidylate ki 91.6 0.12 4.1E-06 45.3 3.7 24 119-142 4-27 (213)
412 3oes_A GTPase rhebl1; small GT 91.6 0.1 3.6E-06 44.7 3.2 26 117-142 23-48 (201)
413 1pui_A ENGB, probable GTP-bind 91.6 0.068 2.3E-06 46.1 2.0 25 116-140 24-48 (210)
414 2qe7_A ATP synthase subunit al 91.6 0.17 5.8E-06 50.0 5.0 34 109-142 152-187 (502)
415 3clv_A RAB5 protein, putative; 91.6 0.1 3.4E-06 44.4 3.1 25 118-142 7-31 (208)
416 2obl_A ESCN; ATPase, hydrolase 91.6 0.11 3.6E-06 49.4 3.4 27 116-142 69-95 (347)
417 2fg5_A RAB-22B, RAS-related pr 91.5 0.099 3.4E-06 44.5 3.0 25 118-142 23-47 (192)
418 3hdt_A Putative kinase; struct 91.5 0.14 4.8E-06 45.2 4.0 26 117-142 13-38 (223)
419 3tkl_A RAS-related protein RAB 91.5 0.1 3.6E-06 44.2 3.1 25 118-142 16-40 (196)
420 3kjh_A CO dehydrogenase/acetyl 91.5 0.091 3.1E-06 46.7 2.8 23 120-142 2-24 (254)
421 2fh5_B SR-beta, signal recogni 91.5 0.1 3.5E-06 45.2 3.1 26 117-142 6-31 (214)
422 3reg_A RHO-like small GTPase; 91.5 0.1 3.6E-06 44.3 3.1 25 118-142 23-47 (194)
423 2zts_A Putative uncharacterize 91.5 0.12 4.1E-06 45.8 3.6 24 118-141 30-53 (251)
424 2ew1_A RAS-related protein RAB 91.5 0.11 3.8E-06 44.8 3.2 25 118-142 26-50 (201)
425 1zd9_A ADP-ribosylation factor 91.4 0.11 3.9E-06 43.9 3.3 25 118-142 22-46 (188)
426 3tmk_A Thymidylate kinase; pho 91.4 0.13 4.4E-06 45.3 3.6 25 118-142 5-29 (216)
427 2gf0_A GTP-binding protein DI- 91.4 0.11 3.8E-06 44.2 3.2 25 118-142 8-32 (199)
428 2gf9_A RAS-related protein RAB 91.4 0.11 3.7E-06 44.0 3.1 25 118-142 22-46 (189)
429 2qnr_A Septin-2, protein NEDD5 91.4 0.091 3.1E-06 48.7 2.8 22 120-141 20-41 (301)
430 1oxx_K GLCV, glucose, ABC tran 91.4 0.067 2.3E-06 50.8 1.8 26 117-142 30-55 (353)
431 3gd7_A Fusion complex of cysti 91.4 0.11 3.7E-06 50.1 3.3 27 116-142 45-71 (390)
432 1ypw_A Transitional endoplasmi 91.3 0.082 2.8E-06 56.1 2.6 45 98-142 477-535 (806)
433 3llu_A RAS-related GTP-binding 91.3 0.099 3.4E-06 44.7 2.8 24 118-141 20-43 (196)
434 2a5j_A RAS-related protein RAB 91.3 0.11 3.8E-06 44.1 3.1 24 119-142 22-45 (191)
435 2b6h_A ADP-ribosylation factor 91.3 0.1 3.6E-06 44.5 2.9 25 116-140 27-51 (192)
436 1x3s_A RAS-related protein RAB 91.3 0.11 3.9E-06 43.9 3.1 24 119-142 16-39 (195)
437 1zbd_A Rabphilin-3A; G protein 91.2 0.11 3.7E-06 44.5 3.0 24 119-142 9-32 (203)
438 2r9v_A ATP synthase subunit al 91.2 0.16 5.3E-06 50.3 4.3 35 108-142 164-200 (515)
439 1u0l_A Probable GTPase ENGC; p 91.2 0.18 6.1E-06 46.7 4.5 34 106-142 160-193 (301)
440 1z06_A RAS-related protein RAB 91.2 0.12 4E-06 43.8 3.1 26 117-142 19-44 (189)
441 2p5s_A RAS and EF-hand domain 91.2 0.12 4E-06 44.3 3.1 26 117-142 27-52 (199)
442 2npi_A Protein CLP1; CLP1-PCF1 91.1 0.1 3.6E-06 51.4 3.0 27 116-142 136-162 (460)
443 2q3h_A RAS homolog gene family 91.1 0.11 3.6E-06 44.5 2.8 25 118-142 20-44 (201)
444 2bcg_Y Protein YP2, GTP-bindin 91.0 0.12 4.2E-06 44.4 3.0 25 118-142 8-32 (206)
445 2o52_A RAS-related protein RAB 90.9 0.11 3.8E-06 44.6 2.7 26 117-142 24-49 (200)
446 3cwq_A Para family chromosome 90.9 0.15 5.1E-06 44.4 3.5 23 120-142 2-25 (209)
447 3tqf_A HPR(Ser) kinase; transf 90.9 0.14 4.8E-06 43.2 3.1 23 119-141 17-39 (181)
448 2atx_A Small GTP binding prote 90.9 0.13 4.4E-06 43.7 3.0 24 119-142 19-42 (194)
449 2pt7_A CAG-ALFA; ATPase, prote 90.8 0.087 3E-06 49.6 2.0 79 119-206 172-254 (330)
450 1ega_A Protein (GTP-binding pr 90.8 0.14 4.8E-06 47.4 3.4 25 118-142 8-32 (301)
451 2gks_A Bifunctional SAT/APS ki 90.8 0.3 1E-05 49.3 6.1 27 116-142 370-396 (546)
452 3k53_A Ferrous iron transport 90.8 0.14 4.8E-06 46.5 3.4 25 118-142 3-27 (271)
453 2fv8_A H6, RHO-related GTP-bin 90.8 0.14 4.7E-06 44.2 3.2 25 118-142 25-49 (207)
454 2qu8_A Putative nucleolar GTP- 90.8 0.13 4.6E-06 45.1 3.1 26 117-142 28-53 (228)
455 4bas_A ADP-ribosylation factor 90.8 0.15 5.2E-06 43.3 3.4 26 117-142 16-41 (199)
456 2hup_A RAS-related protein RAB 90.7 0.13 4.5E-06 44.2 3.0 25 118-142 29-53 (201)
457 2h17_A ADP-ribosylation factor 90.7 0.12 3.9E-06 43.5 2.6 25 118-142 21-45 (181)
458 2j0v_A RAC-like GTP-binding pr 90.7 0.13 4.6E-06 44.3 3.0 25 118-142 9-33 (212)
459 2j1l_A RHO-related GTP-binding 90.7 0.12 4E-06 45.0 2.7 25 118-142 34-58 (214)
460 1ksh_A ARF-like protein 2; sma 90.7 0.17 5.7E-06 42.6 3.6 27 116-142 16-42 (186)
461 2g3y_A GTP-binding protein GEM 90.7 0.14 4.8E-06 44.7 3.1 23 118-140 37-59 (211)
462 3cph_A RAS-related protein SEC 90.7 0.14 4.7E-06 44.1 3.1 25 118-142 20-44 (213)
463 2rcn_A Probable GTPase ENGC; Y 90.6 0.14 4.9E-06 48.6 3.3 24 119-142 216-239 (358)
464 2gco_A H9, RHO-related GTP-bin 90.6 0.14 4.8E-06 43.9 3.0 24 119-142 26-49 (201)
465 3lxx_A GTPase IMAP family memb 90.6 0.16 5.6E-06 45.0 3.6 26 117-142 28-53 (239)
466 3q3j_B RHO-related GTP-binding 90.5 0.15 5E-06 44.4 3.1 25 118-142 27-51 (214)
467 2fu5_C RAS-related protein RAB 90.5 0.086 3E-06 44.2 1.5 25 118-142 8-32 (183)
468 2qag_A Septin-2, protein NEDD5 90.4 0.13 4.5E-06 49.0 2.9 44 98-141 15-60 (361)
469 2qag_B Septin-6, protein NEDD5 90.4 0.13 4.4E-06 50.0 2.9 21 121-141 45-65 (427)
470 3fkq_A NTRC-like two-domain pr 90.4 0.2 6.7E-06 47.9 4.2 27 116-142 141-168 (373)
471 4dkx_A RAS-related protein RAB 90.4 0.15 5.2E-06 44.7 3.1 23 120-142 15-37 (216)
472 2dpy_A FLII, flagellum-specifi 90.3 0.16 5.4E-06 49.8 3.4 27 116-142 155-181 (438)
473 2il1_A RAB12; G-protein, GDP, 90.3 0.15 5.1E-06 43.4 2.9 24 119-142 27-50 (192)
474 1dek_A Deoxynucleoside monopho 90.2 0.19 6.6E-06 44.9 3.6 24 119-142 2-25 (241)
475 2aka_B Dynamin-1; fusion prote 90.1 0.26 9.1E-06 45.0 4.7 26 117-142 25-50 (299)
476 3euj_A Chromosome partition pr 90.1 0.17 6E-06 50.0 3.5 24 119-142 30-53 (483)
477 3th5_A RAS-related C3 botulinu 89.6 0.056 1.9E-06 46.5 0.0 33 110-142 22-54 (204)
478 1yqt_A RNAse L inhibitor; ATP- 90.0 0.16 5.6E-06 51.1 3.3 25 118-142 312-336 (538)
479 3hjn_A DTMP kinase, thymidylat 90.0 0.22 7.5E-06 43.0 3.7 23 120-142 2-24 (197)
480 3ug7_A Arsenical pump-driving 89.9 0.3 1E-05 46.2 5.0 25 118-142 26-50 (349)
481 1yqt_A RNAse L inhibitor; ATP- 89.9 0.17 5.8E-06 51.0 3.3 24 118-141 47-70 (538)
482 3iev_A GTP-binding protein ERA 89.8 0.18 6.2E-06 46.8 3.2 26 117-142 9-34 (308)
483 3ea0_A ATPase, para family; al 89.8 0.25 8.6E-06 43.7 4.1 26 117-142 3-29 (245)
484 2ck3_A ATP synthase subunit al 89.8 0.27 9.1E-06 48.7 4.5 34 109-142 152-187 (510)
485 1byi_A Dethiobiotin synthase; 89.7 0.22 7.5E-06 43.5 3.6 24 119-142 2-26 (224)
486 3ozx_A RNAse L inhibitor; ATP 89.7 0.15 5.2E-06 51.3 2.8 25 118-142 294-318 (538)
487 2h57_A ADP-ribosylation factor 89.7 0.15 5E-06 43.2 2.4 25 118-142 21-45 (190)
488 2f7s_A C25KG, RAS-related prot 89.7 0.15 5.3E-06 44.1 2.5 25 118-142 25-49 (217)
489 2r6a_A DNAB helicase, replicat 89.5 0.21 7.3E-06 49.1 3.7 26 117-142 202-227 (454)
490 4i1u_A Dephospho-COA kinase; s 89.5 0.26 8.9E-06 43.0 3.8 24 117-140 8-31 (210)
491 3bk7_A ABC transporter ATP-bin 89.4 0.19 6.5E-06 51.3 3.3 25 118-142 382-406 (607)
492 1fx0_A ATP synthase alpha chai 89.4 0.4 1.4E-05 47.4 5.4 25 118-142 163-188 (507)
493 1f2t_A RAD50 ABC-ATPase; DNA d 89.4 0.25 8.6E-06 40.5 3.5 24 119-142 24-47 (149)
494 3iby_A Ferrous iron transport 89.4 0.2 6.8E-06 45.2 3.1 24 119-142 2-25 (256)
495 1wcv_1 SOJ, segregation protei 89.3 0.18 6.1E-06 45.4 2.7 27 116-142 4-31 (257)
496 2woo_A ATPase GET3; tail-ancho 89.3 0.26 9E-06 46.2 4.0 28 115-142 16-43 (329)
497 2xtp_A GTPase IMAP family memb 89.3 0.24 8.3E-06 44.4 3.7 26 117-142 21-46 (260)
498 3cpj_B GTP-binding protein YPT 89.3 0.22 7.4E-06 43.5 3.3 25 118-142 13-37 (223)
499 3cmw_A Protein RECA, recombina 89.3 0.18 6.1E-06 57.2 3.2 84 117-203 1430-1520(1706)
500 2woj_A ATPase GET3; tail-ancho 89.3 0.23 8E-06 47.1 3.7 27 116-142 16-42 (354)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-46 Score=381.97 Aligned_cols=278 Identities=12% Similarity=0.043 Sum_probs=216.7
Q ss_pred cchH-HHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHH--hhhhcCCCCcchHhH----------HHHHHHHHH
Q 043070 101 VDVS-RLNEVWRLVEDN---SVRIICLHGVSRLGKTTLLYNLNK--KFNDTRHNFGLVILV----------KRIQHVMGY 164 (414)
Q Consensus 101 vGr~-~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLA~~v~~--~~~~v~~~F~~~~wv----------~~l~~~i~~ 164 (414)
|||+ ++++|.++|... ..++|+|+||||+||||||+++|+ +. .++.+|++++|| ..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 5999 999999999543 689999999999999999999998 45 568999999998 467889999
Q ss_pred HhcCCCC-----ccCcCCHhHHHHHHHHHhCCC-cEEEEEecCCCccchhhhccCCCCCCcHh-----------------
Q 043070 165 RLAMSNE-----VWDDKTKQGRAIDSSRRLGQR-RFALLLDDLREPIDLKTAGASIQNGSKVK----------------- 221 (414)
Q Consensus 165 ~l~~~~~-----~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~~p~~~gs~ii----------------- 221 (414)
+++.... .....+.+.+...+++.|+++ ||||||||||+.+++ . ++..+||+||
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~--~~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R--WAQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H--HHHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c--ccccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 9876521 112335677889999999996 999999999998754 1 2222566666
Q ss_pred ----------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHhccCCCCCC
Q 043070 222 ----------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVNDLINYPAEFP 291 (414)
Q Consensus 222 ----------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~ 291 (414)
+||+||.+.++... .++++.+++++|+++|+|+||||+++|+.|+.+ + |..+ +.+....+..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~- 358 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR- 358 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH-
T ss_pred EEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc-
Confidence 99999999988653 247888999999999999999999999999773 3 4333 3332221111
Q ss_pred CCccchhhHHHhchhCCCCCChhHHHh-----------Hhhhh---hcCCHHHHHHHHHHc--CCccCCCchHHHHHHHH
Q 043070 292 GMGDRIFPRLKFSYDHLPVKPTKLIFY-----------FMNFL---IFIRKDDLVDLWTGE--GLLRDYHNIAAARVQGK 355 (414)
Q Consensus 292 ~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~lsiF---~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~~~ 355 (414)
....+.+++.+||+.||++ +|.||+ |||+| +.|+ +++|+|+ ||+.....+.+.++.++
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1246888999999999998 999999 99999 5666 8899999 99987632455677777
Q ss_pred HHHHHHHHcCcccccccccCCeEEECHHHHHHHHHHHcccCc
Q 043070 356 SIIEGLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIASEDQE 397 (414)
Q Consensus 356 ~~l~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~e~~ 397 (414)
||++|+++|||+....+...+|+|||+||+||++++.+++.
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999999987654467899999999999998877544
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-38 Score=351.61 Aligned_cols=279 Identities=17% Similarity=0.142 Sum_probs=224.4
Q ss_pred cccCCCccchH-HHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhH----------HHHH
Q 043070 94 VQDMENTVDVS-RLNEVWRLVE--DNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILV----------KRIQ 159 (414)
Q Consensus 94 ~~~~~~~vGr~-~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv----------~~l~ 159 (414)
|.++..||||+ ++++|.++|. ++..++|+|+||||+||||||+++|++...+..+| +.++|| ...+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34557799999 9999999994 36789999999999999999999999863335666 566688 3345
Q ss_pred HHHHHHhcCCCC--ccCcCCHhHHHHHHHHHhCCC--cEEEEEecCCCccchhhhccCCCCCCcHh--------------
Q 043070 160 HVMGYRLAMSNE--VWDDKTKQGRAIDSSRRLGQR--RFALLLDDLREPIDLKTAGASIQNGSKVK-------------- 221 (414)
Q Consensus 160 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~~p~~~gs~ii-------------- 221 (414)
..++..+..... .....+.+.+...++..|.++ ||||||||||+..+|..+ .+||+||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----cCCCEEEEEcCCHHHHHhhcC
Confidence 667777764432 113467888999999999887 999999999999888876 3455555
Q ss_pred --------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHhccCC
Q 043070 222 --------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVNDLINYP 287 (414)
Q Consensus 222 --------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~l~~~~ 287 (414)
+|++||...++... +++.+++++|+++|+|+||||+++|++|+.+. ..|..+++.+....
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 89999999885432 33456789999999999999999999998843 57999999887654
Q ss_pred CCC-----CCCccchhhHHHhchhCCCCCChhHHHhHhhhh---hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHH
Q 043070 288 AEF-----PGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNFL---IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIE 359 (414)
Q Consensus 288 ~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsiF---~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~ 359 (414)
+.. ......+..+|.+||+.||++ .|.||+|||+| +.|+++.++.+|.++ ++.++++|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~ 416 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQ 416 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHH
Confidence 321 111236999999999999999 99999999999 689999999999654 356788999
Q ss_pred HHHHcCcccccccccCCeEEECHHHHHHHHHHHccc
Q 043070 360 GLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIASED 395 (414)
Q Consensus 360 ~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~~e 395 (414)
+|+++|||+...++...+|+||++||+|++..+.++
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999999876544557999999999999997764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.2e-36 Score=316.98 Aligned_cols=247 Identities=12% Similarity=0.124 Sum_probs=194.8
Q ss_pred ccchH-HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcc-hHhH--------HHHHHHHHHHhcC
Q 043070 100 TVDVS-RLNEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGL-VILV--------KRIQHVMGYRLAM 168 (414)
Q Consensus 100 ~vGr~-~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~-~~wv--------~~l~~~i~~~l~~ 168 (414)
.|||+ ++++|.++|.+ +..++|+|+||||+||||||+++|++. +++.+|+. ++|+ ..++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 49999 99999999966 568999999999999999999999986 56789986 7898 5666776665432
Q ss_pred CCCcc---------CcCCHhHHHHHHHHHh---CCCcEEEEEecCCCccchhhhccCCCCCCcHh---------------
Q 043070 169 SNEVW---------DDKTKQGRAIDSSRRL---GQRRFALLLDDLREPIDLKTAGASIQNGSKVK--------------- 221 (414)
Q Consensus 169 ~~~~~---------~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~~p~~~gs~ii--------------- 221 (414)
..+.. ...+.+.+...|++.| .+||+||||||||+.+.|+.+. +||+||
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH----SSCCEEEECSCSHHHHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC----CCeEEEEeccChHHHHhcCCC
Confidence 11000 1123456677788876 6899999999999998888762 466665
Q ss_pred -----------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCC-CChhHHHHHHHHh
Q 043070 222 -----------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSI-RNPAVWENAVNDL 283 (414)
Q Consensus 222 -----------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~-~~~~~w~~~~~~l 283 (414)
+|++||++..... . .++..+| |+|+||||+++|++|+.+ .+.++|...
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 6888998874322 1 1223333 999999999999999986 367788652
Q ss_pred ccCCCCCCCCccchhhHHHhchhCCCCCCh-hHHHhHhhhh---hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHHH
Q 043070 284 INYPAEFPGMGDRIFPRLKFSYDHLPVKPT-KLIFYFMNFL---IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSIIE 359 (414)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~lsiF---~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~ 359 (414)
....+..+|.+||+.||++ . |.||+|||+| +.|+.+.++.+|+++| . +.++.+|+
T Consensus 351 ---------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG----e-------edAe~~L~ 409 (1221)
T 1vt4_I 351 ---------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----K-------SDVMVVVN 409 (1221)
T ss_dssp ---------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----S-------HHHHHHHH
T ss_pred ---------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----H-------HHHHHHHH
Confidence 1257999999999999999 9 9999999999 6799999999999887 1 24788999
Q ss_pred HHHHcCcccccccccCCeEEECHHHHHHH
Q 043070 360 GLVLVCLLEEVEAYFGNFVKMHDMIRDLA 388 (414)
Q Consensus 360 ~L~~~sLl~~~~~~~~~~~~mH~lv~~~a 388 (414)
+|+++|||+.... ...|+||||+++++
T Consensus 410 eLvdRSLLq~d~~--~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQPK--ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCSS--SSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeCC--CCEEEehHHHHHHh
Confidence 9999999998532 67899999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=302.89 Aligned_cols=276 Identities=18% Similarity=0.161 Sum_probs=213.6
Q ss_pred cccCCCccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhhhhc-CCCC-cchHhH-------HHHHHH
Q 043070 94 VQDMENTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKFNDT-RHNF-GLVILV-------KRIQHV 161 (414)
Q Consensus 94 ~~~~~~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v-~~~F-~~~~wv-------~~l~~~ 161 (414)
|.++..||||+ ++++|.++|.. ++.++|+|+||||+||||||.+++++. .+ ..+| ++++|+ ..++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHH
Confidence 34457799999 99999999963 567899999999999999999999886 44 6788 578898 334444
Q ss_pred H---HHHhcCC--CCccCcCCHhHHHHHHHHHhCC--CcEEEEEecCCCccchhhhccCCCCCCcHh-------------
Q 043070 162 M---GYRLAMS--NEVWDDKTKQGRAIDSSRRLGQ--RRFALLLDDLREPIDLKTAGASIQNGSKVK------------- 221 (414)
Q Consensus 162 i---~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~~p~~~gs~ii------------- 221 (414)
+ +..++.. .......+.+.+...++..|.+ +++||||||+|+...+..+ .+|++||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHHhcC
Confidence 3 3344421 1112345677888889998877 7999999999998776654 2234443
Q ss_pred ---------------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHhcCCCChhHHHHHHHHhccC
Q 043070 222 ---------------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAMTSIRNPAVWENAVNDLINY 286 (414)
Q Consensus 222 ---------------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L~~~~~~~~w~~~~~~l~~~ 286 (414)
++++||...++... +...+.+.+|+++|+|+||||+.+|++|+.+ ..+|..+++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHh
Confidence 89999999987532 2224578899999999999999999999873 35799988888765
Q ss_pred CCC-----CCCCccchhhHHHhchhCCCCCChhHHHhHhhhh---hcCCHHHHHHHHHHcCCccCCCchHHHHHHHHHHH
Q 043070 287 PAE-----FPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNFL---IFIRKDDLVDLWTGEGLLRDYHNIAAARVQGKSII 358 (414)
Q Consensus 287 ~~~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsiF---~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l 358 (414)
... ......++..++.+||+.||++ .|.||++||+| +.|+.+.+..+|.++ .+.+..++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l 415 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDIL 415 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHH
Confidence 322 1122347899999999999999 99999999999 579999999999643 23467899
Q ss_pred HHHHHcCcccccccccCCeEEECHHHHHHHHHHHc
Q 043070 359 EGLVLVCLLEEVEAYFGNFVKMHDMIRDLALWIAS 393 (414)
Q Consensus 359 ~~L~~~sLl~~~~~~~~~~~~mH~lv~~~a~~~~~ 393 (414)
++|+++|||+...++....|+||+++|+|++....
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99999999997654445689999999999998743
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=1.9e-12 Score=124.24 Aligned_cols=254 Identities=13% Similarity=0.080 Sum_probs=145.6
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------------HHHHH
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------------KRIQH 160 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------------~~l~~ 160 (414)
.+..++||+ ++++|.+++.+. +++.|+|++|+|||||++++++.. . .+|+ ..++.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 346799999 999999999764 799999999999999999999865 1 1222 13344
Q ss_pred HHHHHhcC----------------CCCccCcCCHhHHHHHHHHHhCC-CcEEEEEecCCCccc---------hhhhc-c-
Q 043070 161 VMGYRLAM----------------SNEVWDDKTKQGRAIDSSRRLGQ-RRFALLLDDLREPID---------LKTAG-A- 212 (414)
Q Consensus 161 ~i~~~l~~----------------~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~~~-~- 212 (414)
.+...+.. ........+..++...+.+.... ++++|||||+..... +..+. +
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 44444321 00000124556666667666653 499999999977432 11110 0
Q ss_pred CCCCCCc------------------------------Hh--------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhC
Q 043070 213 SIQNGSK------------------------------VK--------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCG 254 (414)
Q Consensus 213 p~~~gs~------------------------------ii--------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 254 (414)
....+.. .+ ++.+++...........+ .+.+..|.+.|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhC
Confidence 0000111 11 555666554322111111 345678999999
Q ss_pred CchhHHHHHHHHhcCCCChhHHH-HHHHHhccCCCCCCCCccchhhHHHhchhCC---CCCChhHHHhHhhhhhcCCHHH
Q 043070 255 GLPLSLITTGSAMTSIRNPAVWE-NAVNDLINYPAEFPGMGDRIFPRLKFSYDHL---PVKPTKLIFYFMNFLIFIRKDD 330 (414)
Q Consensus 255 GlPLai~~~g~~L~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cfl~lsiF~~i~~~~ 330 (414)
|+|+++..++..+....+...+. .+.+. +...+.-.+..+ ++. .+..+..+|. ..++...
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g~~~~~~ 300 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------------AKGLIMGELEELRRRSPR-YVDILRAIAL-GYNRWSL 300 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT-TCCSHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHH--------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh-CCCCHHH
Confidence 99999999987653212222221 11111 111111112222 565 7888888877 4455555
Q ss_pred HHHHHHHcCCccCCCchHHHHHHHHHHHHHHHHcCcccccccccCCeEEE-CHHHHHHHH
Q 043070 331 LVDLWTGEGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVEAYFGNFVKM-HDMIRDLAL 389 (414)
Q Consensus 331 Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~m-H~lv~~~a~ 389 (414)
+.....+.. - .. ......++++.|.+.+||...+ ..|++ |++++.+.+
T Consensus 301 l~~~~~~~~-~-~~-----~~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG-T-KI-----PEPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT-C-CC-----CHHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred HHHHHHHHh-C-CC-----CHHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 554332211 0 11 1234677899999999998763 45655 788888764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=9.1e-12 Score=119.72 Aligned_cols=259 Identities=14% Similarity=0.063 Sum_probs=136.9
Q ss_pred cCCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHh-------HHHHHHHHHHHh-
Q 043070 96 DMENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVIL-------VKRIQHVMGYRL- 166 (414)
Q Consensus 96 ~~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~w-------v~~l~~~i~~~l- 166 (414)
.+..++||+ +++.|.+ +.. +++.|+|++|+|||||++.+++......-.+++... ...+...+...+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEIN 86 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHH
Confidence 346799999 9999999 865 699999999999999999999876210001122211 011222222211
Q ss_pred -------------cC----CCCc----c-----CcCCHhHHHHHHHHHhCCCcEEEEEecCCCcc-----chhh-h-ccC
Q 043070 167 -------------AM----SNEV----W-----DDKTKQGRAIDSSRRLGQRRFALLLDDLREPI-----DLKT-A-GAS 213 (414)
Q Consensus 167 -------------~~----~~~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~-~-~~p 213 (414)
.. ..+. . .......+...+.+.-. ++++|||||+.... ++.. + .+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 87 KLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 00 0000 0 01234455555544322 49999999997632 1111 1 000
Q ss_pred -CCCCCcH------------------------------h--------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhC
Q 043070 214 -IQNGSKV------------------------------K--------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCG 254 (414)
Q Consensus 214 -~~~gs~i------------------------------i--------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 254 (414)
...+..+ + ++.+++........... +. ...|++.|+
T Consensus 166 ~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i~~~t~ 240 (357)
T 2fna_A 166 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVVYEKIG 240 (357)
T ss_dssp HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHHHHHHC
T ss_pred HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHHHHHhC
Confidence 0011111 1 55555554331101011 11 167899999
Q ss_pred CchhHHHHHHHHhcCCCChhHHHH-HHHHhccCCCCCCCCccchhhHHH-hchh--CCCCCChhHHHhHhhhhhcCCHHH
Q 043070 255 GLPLSLITTGSAMTSIRNPAVWEN-AVNDLINYPAEFPGMGDRIFPRLK-FSYD--HLPVKPTKLIFYFMNFLIFIRKDD 330 (414)
Q Consensus 255 GlPLai~~~g~~L~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~lsiF~~i~~~~ 330 (414)
|+|+++..++..+....+...|.. +.+... ..+...+. +.++ .||+. .+..+..+|. .. +...
T Consensus 241 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g~-~~~~ 307 (357)
T 2fna_A 241 GIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIARKR-YLNIMRTLSK-CG-KWSD 307 (357)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-CB-CHHH
T ss_pred CCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccccHH-HHHHHHHHHc-CC-CHHH
Confidence 999999999887643223333321 111100 00111111 1111 57776 8888888887 44 5444
Q ss_pred HHHHHH-HcCCccCCCchHHHHHHHHHHHHHHHHcCcccccccccCCeEE-ECHHHHHHH
Q 043070 331 LVDLWT-GEGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVEAYFGNFVK-MHDMIRDLA 388 (414)
Q Consensus 331 Li~~W~-aeg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~~~~~~~~~-mH~lv~~~a 388 (414)
+..... ..|. + .......++++.|.+.+||...+ ..|+ -|++++++.
T Consensus 308 l~~~~~~~~g~--~-----~~~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~l 356 (357)
T 2fna_A 308 VKRALELEEGI--E-----ISDSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHCS--C-----CCHHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHHT
T ss_pred HHHHHHHhcCC--C-----CCHHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHhh
Confidence 433211 1121 0 01234667899999999998753 4566 578988875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=5.7e-12 Score=123.88 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=146.1
Q ss_pred CCccchH-HHHHHHHHh-hc------CCceEEEE--EcCCCCcHHHHHHHHHHhhhhc--CCCCc-chHhH--------H
Q 043070 98 ENTVDVS-RLNEVWRLV-ED------NSVRIICL--HGVSRLGKTTLLYNLNKKFNDT--RHNFG-LVILV--------K 156 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~v--~~~F~-~~~wv--------~ 156 (414)
..++||+ +++++.++| .. .....+.| +|++|+||||||+.+++..... ...|. ..+|+ .
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 6799999 999999998 42 24456767 9999999999999999876210 00121 22344 5
Q ss_pred HHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCcc--------chhhh-ccC-CCC--C--Cc-
Q 043070 157 RIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREPI--------DLKTA-GAS-IQN--G--SK- 219 (414)
Q Consensus 157 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--------~~~~~-~~p-~~~--g--s~- 219 (414)
.++..++.+++...+. ...+...+...+.+.|. +++++|||||++... .+..+ ... ... + ++
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 7888888888765321 23345666777777775 689999999998642 22221 111 000 1 22
Q ss_pred -Hh-----------------------------------hHHHHHHHhh---cCCcCCCCchHHHHHHHHHHHhC------
Q 043070 220 -VK-----------------------------------YAWNLFQLKV---TDDVLNSHRDIRKHAETVAGLCG------ 254 (414)
Q Consensus 220 -ii-----------------------------------~a~~Lf~~~a---~~~~~~~~~~l~~~~~~I~~~c~------ 254 (414)
+| +.+++|...+ +... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccCC
Confidence 22 4444554332 1111 111 345677888999
Q ss_pred CchhHHHHHHHHh-c-----CC--CChhHHHHHHHHhccCCCCCCCCccchhhHHHhchhCCCCCChhHHHhHhhhh---
Q 043070 255 GLPLSLITTGSAM-T-----SI--RNPAVWENAVNDLINYPAEFPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNFL--- 323 (414)
Q Consensus 255 GlPLai~~~g~~L-~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsiF--- 323 (414)
|.|..+..+.... . .. .+.+.+..++..... ...+.-++..||++ .+.++..++.+
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLG 323 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhc
Confidence 9996555444321 1 11 233444444432110 12334467789987 89988888865
Q ss_pred --hcCCHHHHHHHHH--H---cCCccCCCchHHHHHHHHHHHHHHHHcCcccccc
Q 043070 324 --IFIRKDDLVDLWT--G---EGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVE 371 (414)
Q Consensus 324 --~~i~~~~Li~~W~--a---eg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~ 371 (414)
..++...+...+. + .|. .+. .......++++|.+.+||....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHHHHHHHhCCCEEeec
Confidence 2456666555442 2 121 111 1234567899999999997754
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=6.7e-09 Score=100.88 Aligned_cols=249 Identities=11% Similarity=-0.023 Sum_probs=143.4
Q ss_pred CCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhc---CCC--CcchHhH---------HHH
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDT---RHN--FGLVILV---------KRI 158 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v---~~~--F~~~~wv---------~~l 158 (414)
..++||+ +++++.++|.. ...+.+.|+|++|+||||||+.+++..... ... ....+|+ ..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 7899999 99999988843 446789999999999999999999876211 001 1122333 345
Q ss_pred HHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCccc-------hhhh-cc-C-------C-CCC----
Q 043070 159 QHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREPID-------LKTA-GA-S-------I-QNG---- 217 (414)
Q Consensus 159 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~~~~-~~-p-------~-~~g---- 217 (414)
+..++..+..........+...+...+.+.+..++.+|||||++.... +..+ .. + + ...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 667777773322222344456777888888888777999999976431 1121 11 0 1 110
Q ss_pred ---------CcHh--------hHHHHHHHhhc---CCcCCCCchHHHHHHHHHHHhC---Cchh-HHHHHHHH--hc---
Q 043070 218 ---------SKVK--------YAWNLFQLKVT---DDVLNSHRDIRKHAETVAGLCG---GLPL-SLITTGSA--MT--- 268 (414)
Q Consensus 218 ---------s~ii--------~a~~Lf~~~a~---~~~~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~g~~--L~--- 268 (414)
+.++ +..++|...+. ... ..++ +....|++.|+ |.|. |+..+-.. +.
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG-TYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-SCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC-CcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 0111 66777776642 211 2222 34556667776 8775 33333222 22
Q ss_pred CCCChhHHHHHHHHhccCCCCCCCCccchhhHHHhchhCCCCCChhHHHhHhhh-hh--cCCHHHHHHHHHHcCCccCCC
Q 043070 269 SIRNPAVWENAVNDLINYPAEFPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMNF-LI--FIRKDDLVDLWTGEGLLRDYH 345 (414)
Q Consensus 269 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~lsi-F~--~i~~~~Li~~W~aeg~i~~~~ 345 (414)
..-+.+.+..+++... ...+..+++.||++ .+..+..++. +. .+ .+.....--..| ..+.
T Consensus 256 ~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~-~~~~~~~~~~~g-~~~~- 318 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE-------------QERLIEAVKALPFH-YKLALRSLIESEDVMSA-HKMYTDLCNKFK-QKPL- 318 (384)
T ss_dssp SCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHH-HHHHHHHHHHTT-CCCC-
T ss_pred CccCHHHHHHHHHHHh-------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChH-HHHHHHHHHHcC-CCCC-
Confidence 1256677777666432 23466777889876 6655555554 21 01 011111111223 1111
Q ss_pred chHHHHHHHHHHHHHHHHcCcccccc
Q 043070 346 NIAAARVQGKSIIEGLVLVCLLEEVE 371 (414)
Q Consensus 346 ~~~~~~~~~~~~l~~L~~~sLl~~~~ 371 (414)
......++++.|...+|+....
T Consensus 319 ----~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 319 ----SYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp ----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred ----CHHHHHHHHHHHHhCCCEEEEe
Confidence 2245677899999999998754
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.03 E-value=6.7e-09 Score=100.76 Aligned_cols=248 Identities=12% Similarity=0.072 Sum_probs=143.6
Q ss_pred CCccchH-HHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHhhhhcC---C-CCcchHhH--------HHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVRIICLHGVSRLGKTTLLYNLNKKFNDTR---H-NFGLVILV--------KRIQH 160 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~---~-~F~~~~wv--------~~l~~ 160 (414)
+.++||+ +++++.++|.. .....+.|+|++|+||||||+.+++...... . .+ ..+|+ ..++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLV-KPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCE-EEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCe-EEEEEECCcCCCHHHHHH
Confidence 6799999 99999999843 4567899999999999999999998762110 0 11 12233 57788
Q ss_pred HHHHHhcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCccch----hhh----ccC-C---CCCCcHh-----
Q 043070 161 VMGYRLAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREPIDL----KTA----GAS-I---QNGSKVK----- 221 (414)
Q Consensus 161 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~----~~~----~~p-~---~~gs~ii----- 221 (414)
.++..++...+. ...+..++...+.+.+. +++.+||||+++....- +.+ ..+ . ..+..+|
T Consensus 98 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 888888764321 34456667777777774 46899999999864311 111 001 0 1111222
Q ss_pred ----------------------------hHHHHHHHhhc---CCcCCCCchHHHHHHHHHHHhC---Cch-hHHHHHHHH
Q 043070 222 ----------------------------YAWNLFQLKVT---DDVLNSHRDIRKHAETVAGLCG---GLP-LSLITTGSA 266 (414)
Q Consensus 222 ----------------------------~a~~Lf~~~a~---~~~~~~~~~l~~~~~~I~~~c~---GlP-Lai~~~g~~ 266 (414)
+..+++...+. ... ..++ +....|++.++ |.| .++..+..+
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 55566655532 211 1122 23456667776 888 333322222
Q ss_pred hc-----C--CCChhHHHHHHHHhccCCCCCCCCccchhhHHHhchhCCCCCChhHHHhHhh-hh---hcCCHHHHHHHH
Q 043070 267 MT-----S--IRNPAVWENAVNDLINYPAEFPGMGDRIFPRLKFSYDHLPVKPTKLIFYFMN-FL---IFIRKDDLVDLW 335 (414)
Q Consensus 267 L~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~ls-iF---~~i~~~~Li~~W 335 (414)
.. . .-+.+.+..++.... ...+.-++..||++ .+..+..++ ++ ..+....+.+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 11 1 135566666655431 23455677889876 555555454 33 234444333332
Q ss_pred ----HHcCCccCCCchHHHHHHHHHHHHHHHHcCcccccc
Q 043070 336 ----TGEGLLRDYHNIAAARVQGKSIIEGLVLVCLLEEVE 371 (414)
Q Consensus 336 ----~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sLl~~~~ 371 (414)
-..| ..+. ....+..+++.|...|++....
T Consensus 319 ~~~~~~~~-~~~~-----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 319 KELTSTLG-LEHV-----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcC-CCCC-----CHHHHHHHHHHHHhCCCeEEEe
Confidence 1223 2221 2345677899999999998754
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=2e-09 Score=104.44 Aligned_cols=106 Identities=9% Similarity=0.092 Sum_probs=74.3
Q ss_pred CCccchH-HHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE----DNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVMGY 164 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i~~ 164 (414)
+.++||+ +++.+.+++. ......+.|+|++|+||||||+.+++........-...+|+ ..++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6799999 9999999986 34567899999999999999999998762110001122333 466777777
Q ss_pred HhcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCc
Q 043070 165 RLAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREP 204 (414)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 204 (414)
.++...+. ...+..+....+.+.+. +++.+||||+++..
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 77654321 23345666667777765 45899999999753
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=2e-08 Score=97.57 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCccchH-HHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--------HHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED----NSVR--IICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--------KRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--------~~l~~~i 162 (414)
+.++||+ +++++.+++.. .... .+.|+|++|+||||||+.+++... ....+ ..+++ ..+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKTTA-RFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSCCC-EEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhcCe-eEEEEeCccCCCHHHHHHHH
Confidence 6799999 99999999854 3334 899999999999999999998872 11112 22233 5778888
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhC--CCcEEEEEecCCCc
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLG--QRRFALLLDDLREP 204 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 204 (414)
+..++...+. ...+...+...+.+.+. +++.+||||+++..
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 8888654321 23455666677777664 56899999999775
No 12
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=1.4e-08 Score=96.41 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=39.0
Q ss_pred CCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|++ .+..+.+++.. .....+.|+|++|+|||+||+.+++..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999 99998888842 344678999999999999999999877
No 13
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.75 E-value=4.1e-10 Score=90.07 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.8
Q ss_pred chHHHHHHHhhhcccccchhhhhhhccccccc
Q 043070 3 NSKSCMMKSIKGSGIQYKIVTCLDRQCHTDWK 34 (414)
Q Consensus 3 ~~~~~W~~~vr~~dlayd~eD~iD~~~~~~~~ 34 (414)
.+++.|++||| |+|||+|||||+|.++.+.
T Consensus 55 ~~vk~W~~~vr--dlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 55 SQDKLWADEVR--ELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 36899999999 9999999999999887654
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.74 E-value=2.5e-08 Score=89.70 Aligned_cols=164 Identities=10% Similarity=0.033 Sum_probs=89.9
Q ss_pred CCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcc--hHhHHHHHHHHHHHhcCCCCcc
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGL--VILVKRIQHVMGYRLAMSNEVW 173 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~--~~wv~~l~~~i~~~l~~~~~~~ 173 (414)
.+++|++ .++.+.+++.... ...+.|+|++|+||||||+.+++... ....+.. ..+.... ..+...........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITATPCGVCDNC-REIEQGRFVDLIEI 100 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCSSCCSCSHHH-HHHHTTCCSSEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCcccHHH-HHHhccCCcceEEe
Confidence 5689999 9999999997643 45889999999999999999998772 1111100 0000110 11111100000000
Q ss_pred ---CcCCHhHHHHHHHHHh-----CCCcEEEEEecCCCcc--chhhhc--cC-CCCCCcHh-------------------
Q 043070 174 ---DDKTKQGRAIDSSRRL-----GQRRFALLLDDLREPI--DLKTAG--AS-IQNGSKVK------------------- 221 (414)
Q Consensus 174 ---~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~~~--~p-~~~gs~ii------------------- 221 (414)
.....+.+ ..+.+.+ .+++.+|||||++... .+..+. +. ...+..+|
T Consensus 101 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~ 179 (250)
T 1njg_A 101 DAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 179 (250)
T ss_dssp ETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhh
Confidence 01112222 2233332 3468999999997643 333331 11 11222222
Q ss_pred ---------hHHHHHHHhhcCCcCCCCchHHHHHHHHHHHhCCchhHHHHHHHHh
Q 043070 222 ---------YAWNLFQLKVTDDVLNSHRDIRKHAETVAGLCGGLPLSLITTGSAM 267 (414)
Q Consensus 222 ---------~a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~g~~L 267 (414)
+..+++...+.......+ .+....|++.|+|.|..+..+...+
T Consensus 180 i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 666777666543221222 3456788999999998887766544
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.65 E-value=1.4e-07 Score=83.58 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=40.0
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|++ .++.+.+++.......+.|+|.+|+|||+||+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999987665569999999999999999999875
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=7.4e-07 Score=84.06 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=40.2
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|++ .++.+.+++.....+.+.|+|++|+||||+|+.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 6689999 99999999987665559999999999999999999875
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.28 E-value=2.3e-06 Score=73.70 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=41.2
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++||+ .++++.+.+.......+.|+|.+|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36689999 99999999977666778999999999999999999876
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=6.3e-06 Score=77.74 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|++ .++.+.+++..+..+.+.++|++|+||||+|+.+++..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36699999 99999999987766669999999999999999999875
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.15 E-value=6.5e-06 Score=77.51 Aligned_cols=106 Identities=8% Similarity=0.137 Sum_probs=70.9
Q ss_pred CCccchH-HHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCC-----CCcchHhH--------HHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE----DNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRH-----NFGLVILV--------KRIQ 159 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~-----~F~~~~wv--------~~l~ 159 (414)
..+.||| ++++|...|. ......+-|+|++|+|||++++.+++....... .|. .+.| ..+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~-~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFD-YIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEE-EEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceE-EEEEeccccCCHHHHH
Confidence 3478999 9999998884 366788999999999999999999998832111 121 1222 6788
Q ss_pred HHHHHHhcCCCCccCcCCHhHHHHHHHHH--hCCCcEEEEEecCCCcc
Q 043070 160 HVMGYRLAMSNEVWDDKTKQGRAIDSSRR--LGQRRFALLLDDLREPI 205 (414)
Q Consensus 160 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~ 205 (414)
..|++++...... .....+.+...+... -.+++++++||+++...
T Consensus 99 ~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 99 EKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 8999998654321 222233333333321 14578999999998764
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.89 E-value=5.2e-05 Score=71.06 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|++ .++.+.+++..+..+.+.++|++|+|||++|+.+++..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 35689999 99999999977666569999999999999999999875
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.87 E-value=8e-05 Score=71.52 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|++ .++.+.+.+.... ...+.|+|++|+||||+|+.+++..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999 9999999997654 3578999999999999999999876
No 22
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=1.9e-05 Score=67.63 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.1
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++|++ +++.+.+.+.......+.|+|.+|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36789999 99999999977666778999999999999999999876
No 23
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=2.6e-05 Score=68.26 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCH
Q 043070 105 RLNEVWRLVEDN----SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTK 178 (414)
Q Consensus 105 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~ 178 (414)
.++.+.+++... ....+.|+|.+|+|||+||+.+++... ......+++ ..+...+...... .+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 106 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVPELFRELKHSLQD-------QTM 106 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHHHHHHHHHHC----------CCC
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhHHHHHHHHHHhcc-------chH
Confidence 445555555442 126899999999999999999999872 222233334 5555554433221 112
Q ss_pred hHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 179 QGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 179 ~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
......+. +. -+|||||++.
T Consensus 107 ~~~~~~~~----~~-~~lilDei~~ 126 (202)
T 2w58_A 107 NEKLDYIK----KV-PVLMLDDLGA 126 (202)
T ss_dssp HHHHHHHH----HS-SEEEEEEECC
T ss_pred HHHHHHhc----CC-CEEEEcCCCC
Confidence 23333332 22 3999999965
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.74 E-value=5.8e-05 Score=69.81 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=38.4
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .+++|.+.+.. ....-+.|+|++|+|||+||+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999 99999888732 345679999999999999999999887
No 25
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=0.00013 Score=62.61 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH--HHHHHHHHHHhcCCCCccCcCCHh
Q 043070 105 RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV--KRIQHVMGYRLAMSNEVWDDKTKQ 179 (414)
Q Consensus 105 ~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv--~~l~~~i~~~l~~~~~~~~~~~~~ 179 (414)
.++.+.+++.+ .....+.|+|++|+||||||+.+++......+ + ..+++ .++...+........ ..
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~-------~~ 92 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFFDTKDLIFRLKHLMDEGK-------DT 92 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEEEHHHHHHHHHHHHHHTC-------CS
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEEEHHHHHHHHHHHhcCch-------HH
Confidence 55555555533 33578999999999999999999988721111 1 11222 455555544443221 01
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCC
Q 043070 180 GRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 180 ~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
..... +. +.-+|||||+..
T Consensus 93 ~~~~~----~~-~~~llilDE~~~ 111 (180)
T 3ec2_A 93 KFLKT----VL-NSPVLVLDDLGS 111 (180)
T ss_dssp HHHHH----HH-TCSEEEEETCSS
T ss_pred HHHHH----hc-CCCEEEEeCCCC
Confidence 22222 22 456899999973
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.61 E-value=0.00011 Score=72.62 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=41.2
Q ss_pred cCCCccchH-HH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 96 DMENTVDVS-RL---NEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 96 ~~~~~vGr~-~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++||.+ .+ ..+...+.......+.|+|.+|+||||||+.+++..
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 346789999 77 788888888777889999999999999999999887
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.60 E-value=0.00023 Score=64.74 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=35.5
Q ss_pred CCccchH-HHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE---D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.+.+++. . ...+-+.|+|++|+|||+||+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689998 7777766552 1 234568899999999999999999877
No 28
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.46 E-value=0.00028 Score=65.95 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i 162 (414)
.+++|.+ .+++|.+++.. ...+.+.|+|++|+|||+||+.+++.. ...| .... ..+....
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~--~~l~~~~ 89 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG--PELLTMW 89 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECH--HHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEh--HHHHhhh
Confidence 5688999 88888887632 345679999999999999999999987 3333 1100 2222221
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
.+.. ...+...+.......+.+|+||++..
T Consensus 90 ---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 90 ---FGES--------EANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp ---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred ---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 1111 11222333333445789999999864
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.42 E-value=0.0003 Score=66.30 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred CCCccchH-HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-++++|.+ .++.+.+++.... ..++.+.|++|+|||++|+.+++..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 36789999 9999999997654 3577788889999999999999876
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.42 E-value=0.00038 Score=64.70 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999 99998888732 235689999999999999999999877
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.38 E-value=0.00034 Score=66.06 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+.+.- ...+-+.++|++|+|||+||+.+++..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999 99998887721 224579999999999999999999887
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.35 E-value=0.00027 Score=69.84 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred CCcc-chH---HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc--chHhH--HHHHHHHHHHhcC
Q 043070 98 ENTV-DVS---RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG--LVILV--KRIQHVMGYRLAM 168 (414)
Q Consensus 98 ~~~v-Gr~---~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~--~~~wv--~~l~~~i~~~l~~ 168 (414)
++|| |.. ....+........ ...+.|+|.+|+||||||+.+++... ..|. ..+++ ..+...+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~~~~~~~~~~~~~~ 181 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITSEKFLNDLVDSMKE 181 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEHHHHHHHHHHHHHT
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHHHHHHHHHHHHHc
Confidence 3455 644 4444444444433 67899999999999999999998772 2221 11233 4444455544432
Q ss_pred CCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCCc
Q 043070 169 SNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLREP 204 (414)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 204 (414)
.. ...+...+..+..+|+|||+...
T Consensus 182 ~~-----------~~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 182 GK-----------LNEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp TC-----------HHHHHHHHTTTCSEEEEECGGGG
T ss_pred cc-----------HHHHHHHhcCCCCEEEEeCcccc
Confidence 11 11233344445678888888644
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00041 Score=66.53 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+.+.. ...+.+.|+|++|+|||+||+.+++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999 99998888731 345789999999999999999999876
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.00072 Score=63.83 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .++.|.+.+.- ...+-|.++|++|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5688999 88888877621 234679999999999999999999876
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.26 E-value=0.001 Score=64.51 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.0
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+.+.. ...+-+.|+|.+|+|||+||+.+++..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999 99999988721 234689999999999999999998876
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0006 Score=65.90 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ .+++|.+.+. . ...+-|.++|++|.|||.||+++++..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3456888 8877777652 1 345789999999999999999999988
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.22 E-value=0.00067 Score=64.95 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+.+.. ...+-|.|+|++|+|||+||+.+++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999 99998887721 223468899999999999999999987
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.19 E-value=0.0013 Score=59.76 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCccchH-HHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLV---ED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .++++.+.+ .. ...+-+.|+|.+|+||||||+.+++..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5688988 777766654 21 123468899999999999999999876
No 39
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00081 Score=65.90 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ .+++|.+.+. . ...+-|.++|++|.|||+||+++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456888 7777777662 1 346789999999999999999999988
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.17 E-value=0.001 Score=60.90 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=34.6
Q ss_pred CCccchH-HHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWR-------LVE---DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.. .++++++ .+. ......+.|+|++|+|||+||+.+++..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4577777 6666665 332 3456789999999999999999999876
No 41
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.15 E-value=0.0012 Score=69.82 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++||+ +++.+++.|......-+.|+|.+|+|||++|+.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999977666778899999999999999999876
No 42
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00056 Score=66.99 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=36.6
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|-+ .+++|.+.+. . ...+-|.++|++|.|||.||+++++..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4456888 8888887651 1 346789999999999999999999988
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.14 E-value=0.00081 Score=63.34 Aligned_cols=45 Identities=24% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCcc-chH---HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTV-DVS---RLNEVWRLVEDN--SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~v-Gr~---~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|| |.. ....+..++... ....+.|+|++|+||||||+.+++..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4565 543 445555555443 35689999999999999999999877
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.13 E-value=0.00046 Score=68.70 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=40.0
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|||+ +++.+++.|......-+.|+|.+|+|||++|+.+++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999976555667899999999999999999886
No 45
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.13 E-value=0.00038 Score=64.83 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999988
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.12 E-value=0.00044 Score=57.07 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=34.9
Q ss_pred CccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|+. .+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999 99999888843 333457899999999999999999865
No 47
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0011 Score=65.16 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ .+++|.+.+. . ...+-|.++|++|.|||+||+++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3567888 8888877651 1 456789999999999999999999988
No 48
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0011 Score=64.72 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=36.4
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ .+++|.+.+.- ...+-|.++|++|.|||+||+++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456888 88888776621 345679999999999999999999988
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00047 Score=65.49 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|++ .++.+..++.......+.|+|++|+||||+|+.+++..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999 99999999977655558999999999999999998875
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0012 Score=64.23 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++.|.+ .+++|.+.+. . ...+-|.++|++|.|||.||+++++..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 3455888 7777777652 1 346789999999999999999999988
No 51
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.98 E-value=0.00074 Score=63.94 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=39.2
Q ss_pred CCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|++ .++.+..++.. .....+.|+|++|+|||+||+.+++..
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36799999 99999998843 445678999999999999999998876
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.00086 Score=67.62 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCccchH-HHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-----------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|++ .++++.++|.. ...+.+.|+|++|+||||+|+.+++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6689999 99999999954 134789999999999999999999876
No 53
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.82 E-value=0.0017 Score=60.72 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEE
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFAL 196 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~Ll 196 (414)
-+++.|+|++|+|||+||.+++... ..+-.| +.. +...... ...+.+.....+.+.+...+ +|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~-------------~eE~v~~-~~~~le~~l~~i~~~l~~~~-LL 186 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVR-------------FGEPLSG-YNTDFNVFVDDIARAMLQHR-VI 186 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEE-------------BSCSSTT-CBCCHHHHHHHHHHHHHHCS-EE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEec-------------chhhhhh-hhcCHHHHHHHHHHHHhhCC-EE
Confidence 3577899999999999999998753 112122 110 0000000 11456677777777777766 99
Q ss_pred EEecCCCc
Q 043070 197 LLDDLREP 204 (414)
Q Consensus 197 VlDdv~~~ 204 (414)
|+|++...
T Consensus 187 VIDsI~aL 194 (331)
T 2vhj_A 187 VIDSLKNV 194 (331)
T ss_dssp EEECCTTT
T ss_pred EEeccccc
Confidence 99998654
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.81 E-value=0.0019 Score=64.54 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-chHhHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-LVILVKRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-~~~wv~~l~~~i 162 (414)
..++|.+ .+++|.+++.. ....-+.|+|.+|+|||+||+.+++.. ...|- ..+ ..+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~--~~l~--- 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING--PEIM--- 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH--HHHH---
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc--hHhh---
Confidence 4588999 99998888732 345679999999999999999998876 33331 110 1111
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCC
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLR 202 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 202 (414)
..+ ...........+.....+++.+|+||++.
T Consensus 276 -~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 276 -SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp -TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred -hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 110 11112223333444445678899999984
No 55
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.78 E-value=0.0033 Score=57.79 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=32.7
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.+ .+++|.+.+. . .-.+-+.++|++|+||||||+.++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 5577888 7777776541 1 112339999999999999999999876
No 56
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.72 E-value=0.0017 Score=60.46 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=35.2
Q ss_pred CccchH-HHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVE---------------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|.+ .++.|.+.+. ......+.|+|.+|+|||+||+.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 478988 8887777653 2344579999999999999999988876
No 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.72 E-value=0.0034 Score=62.29 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=53.6
Q ss_pred CCccchH-HHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcc-hHhHHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE---D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGL-VILVKRIQHVMG 163 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~-~~wv~~l~~~i~ 163 (414)
.+++|.+ .++++.+.+. . ...+-|.|+|++|+|||+||+.+++.. ...|-. .. ..+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~--~~~~---- 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISG--SDFV---- 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG--GGTT----
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH--HHHH----
Confidence 5688988 7777766542 1 123458899999999999999999877 233311 00 0000
Q ss_pred HHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 164 YRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
. .+...........+.....+.+.+|+||++..
T Consensus 87 ----~---~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 87 ----E---LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ----T---CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ----H---HHhcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 00111122233334444556789999999954
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.71 E-value=0.0013 Score=69.47 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=40.1
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++||++ +++++.+.|......-+.++|.+|+|||++|+.+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999 99999999977655668899999999999999999886
No 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00083 Score=63.95 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=38.9
Q ss_pred CCCccchH-HHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLV-EDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|.+ .++.+.+++ .......+.|+|+.|+||||+|+.+++..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36689999 999999998 66554459999999999999999999854
No 60
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.69 E-value=0.0043 Score=61.96 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCccchH-HHHHHHHHh---hcC---------CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLV---EDN---------SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .+.++.+.+ ... -.+-+.|+|++|+||||||+.+++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5688988 766666654 221 12348999999999999999999877
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.67 E-value=0.0014 Score=70.33 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|||+ ++..+++.|......-+.++|.+|+|||+||+.+++..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999 99999999977666678899999999999999999876
No 62
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.0022 Score=61.36 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=36.1
Q ss_pred CCCccchH-HHHH---HHHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNE---VWRLVEDNSV--RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+||++ .++. +.+.+..... +.+.|+|++|+|||+||+.+++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999 7665 4444544333 589999999999999999999987
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.00052 Score=56.49 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++|++ .++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578998 88888888743 333457899999999999999998765
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.61 E-value=0.0021 Score=59.66 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCccchH-HHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999 88888887743 235678899999999999999999877
No 65
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.60 E-value=0.0027 Score=55.35 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=32.1
Q ss_pred hH-HHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 103 VS-RLNEVWRLVED---NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 103 r~-~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+ .++++.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 66777777753 345799999999999999999998755
No 66
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0013 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDN---SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.+.+++... ....+.|+|.+|+|||+||..+++..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455555666542 24688999999999999999999977
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0022 Score=60.79 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.|...+..+..+.+.++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5578988 88999888877665559999999999999999999876
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.56 E-value=0.0046 Score=65.13 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCccchH-HHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCc-chHhHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVE----D---------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFG-LVILVKRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~-~~~wv~~l~~~i 162 (414)
+++.|.+ .+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+|- ... ..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~--~~l---- 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING--PEI---- 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH--HHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh--HHh----
Confidence 3456888 7777777651 1 345789999999999999999999987 33331 100 111
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
. +. +.......+...+.......+++|+||+++.
T Consensus 275 ~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 275 M---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp H---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred h---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 00 0122233333334444456789999999874
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.004 Score=55.27 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=34.7
Q ss_pred CCccch---H-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDV---S-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr---~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|. + .++.+..++.......+.|+|++|+||||||+.+++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567763 3 55666666655566889999999999999999999877
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.50 E-value=0.0023 Score=60.65 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCccchH-HHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 97 MENTVDVS-RLNEVWRLVED-----NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 97 ~~~~vGr~-~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+.++|.+ .++.+...+.. .....+.++|++|+||||||+.+++..
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35678888 77777766643 345679999999999999999999877
No 71
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.44 E-value=0.0035 Score=55.91 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCC----CCcchHhH-------HHHHHHHHHHhcCCCC-------ccCcCCH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRH----NFGLVILV-------KRIQHVMGYRLAMSNE-------VWDDKTK 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~----~F~~~~wv-------~~l~~~i~~~l~~~~~-------~~~~~~~ 178 (414)
.-.++.|+|.+|+|||||+..+.... .... .-..++|+ ..-+..++..++.... -....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 34699999999999999999998753 1111 12344555 1222334444443210 0011222
Q ss_pred hH---HHHHHHHHhC-CCcEEEEEecCCC
Q 043070 179 QG---RAIDSSRRLG-QRRFALLLDDLRE 203 (414)
Q Consensus 179 ~~---~~~~l~~~L~-~kr~LlVlDdv~~ 203 (414)
.+ ....+.+.+. .+.-+||||.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2334555554 4678999998754
No 72
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.43 E-value=0.0018 Score=61.70 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 190 (414)
.-.++.|.|.+|+||||||..++.... ... ..++|+ .......++.++..... ....+.++....+...++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~-~~g--g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ-KMG--GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH-HTT--CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hcC--CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 347999999999999999999987762 111 123445 11111145555544321 133556666666666654
Q ss_pred -CCcEEEEEecCCCc
Q 043070 191 -QRRFALLLDDLREP 204 (414)
Q Consensus 191 -~kr~LlVlDdv~~~ 204 (414)
.+.-++|+|.+-..
T Consensus 137 ~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 137 SGVVDLIVVDSVAAL 151 (356)
T ss_dssp TSCCSEEEEECTTTC
T ss_pred hcCCCeEEehHhhhh
Confidence 56678999988554
No 73
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.43 E-value=0.0017 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.|+|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 74
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.43 E-value=0.0019 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999877
No 75
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.42 E-value=0.0019 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 76
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.41 E-value=0.0023 Score=58.34 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=35.2
Q ss_pred CCccchH-HHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.+.+.+.. ...+-+.|+|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 6689988 77777776531 123447899999999999999999987
No 77
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.35 E-value=0.0032 Score=55.21 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555532 456799999999999999999998776
No 78
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.33 E-value=0.0027 Score=57.86 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|.+ .+.++.+.+.. .....|.|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578998 88888877743 333567899999999999999999876
No 79
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.00061 Score=60.66 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH----HHHHHHHHHHhcCCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV----KRIQHVMGYRLAMSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv----~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
.-.++.|+|..|+||||++..+.++.. .. .....++- .+....|++.++...+.....+..++.+.+.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~~-g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-YA-DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-HT-TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-hc-CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 346889999999999999998888772 11 11111110 1122244555554332222234455666666655554
Q ss_pred cE-EEEEecCCC
Q 043070 193 RF-ALLLDDLRE 203 (414)
Q Consensus 193 r~-LlVlDdv~~ 203 (414)
++ +||+|.+..
T Consensus 89 ~~dvViIDEaQ~ 100 (223)
T 2b8t_A 89 ETKVIGIDEVQF 100 (223)
T ss_dssp TCCEEEECSGGG
T ss_pred CCCEEEEecCcc
Confidence 44 999998853
No 80
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.30 E-value=0.0026 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999877
No 81
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.24 E-value=0.0029 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455799999999999999999998765
No 82
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.0028 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 83
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.21 E-value=0.0037 Score=54.38 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|+.|+||||||+.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998877
No 84
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.19 E-value=0.0038 Score=58.08 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=37.0
Q ss_pred CCccchH-HHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDN---------SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+...+... ....+.++|.+|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4578999 888888888431 23589999999999999999999876
No 85
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.19 E-value=0.003 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 86
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.18 E-value=0.0026 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 87
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.17 E-value=0.0085 Score=57.04 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 190 (414)
.-.++.|.|.+|+||||||..+...... .. ..++|+ ...-...++.++..... ....+.++....+.....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~-~g--~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA-AG--GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-CC--CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999866521 11 233444 00011124455543221 123355666666665554
Q ss_pred -CCcEEEEEecCCC
Q 043070 191 -QRRFALLLDDLRE 203 (414)
Q Consensus 191 -~kr~LlVlDdv~~ 203 (414)
.+.-+||+|.+-.
T Consensus 137 ~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 137 SGALDIIVIDSVAA 150 (349)
T ss_dssp TTCCSEEEEECGGG
T ss_pred cCCCCEEEEcChHh
Confidence 3567999998754
No 88
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.16 E-value=0.0033 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 89
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.0038 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.15 E-value=0.0037 Score=59.90 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCc---cCcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEV---WDDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 190 (414)
.-.++.|.|.+|+||||||..++.... .. -..++|+ ...-...+..++.+... ....+.+++.+.+...++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~~--g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-KA--GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HT--TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-HC--CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 346899999999999999999887652 11 1245566 10111124455543221 123456777777776665
Q ss_pred C-CcEEEEEecCCCc
Q 043070 191 Q-RRFALLLDDLREP 204 (414)
Q Consensus 191 ~-kr~LlVlDdv~~~ 204 (414)
. +--+||+|.+-..
T Consensus 150 ~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 150 SGAIDVVVVDSVAAL 164 (366)
T ss_dssp TTCCSEEEEECTTTC
T ss_pred cCCCCEEEEeChHHh
Confidence 3 5569999988543
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.13 E-value=0.0046 Score=65.65 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=36.9
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .+++|.+++.. .....|.|+|.+|+||||||+.+++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5578988 88888887732 334679999999999999999999876
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.13 E-value=0.0064 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.-.++.|+|.+|+||||||..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 93
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.13 E-value=0.0066 Score=53.52 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.+.+.+.......|+|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555555555677899999999999999999998775
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.13 E-value=0.0034 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998754
No 95
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.09 E-value=0.003 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|+|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 96
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.07 E-value=0.0056 Score=57.14 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.9
Q ss_pred CCccchH-HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|+. .+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999 99998888844 344567899999999999999999865
No 97
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.07 E-value=0.0037 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 98
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.03 E-value=0.0038 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 99
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.03 E-value=0.0074 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|.+|+|||||++.++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998655
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.02 E-value=0.013 Score=55.69 Aligned_cols=26 Identities=35% Similarity=0.238 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|+|.+|+||||||..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 101
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.02 E-value=0.004 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 102
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0038 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998765
No 103
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.00 E-value=0.008 Score=59.23 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCccchH-HHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE------------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .++.|.+.+. ....+-|.|+|++|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5688999 8888888762 1234689999999999999999999876
No 104
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.98 E-value=0.0038 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999877
No 105
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.97 E-value=0.0047 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 106
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.95 E-value=0.0059 Score=56.94 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=52.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCcc---CcCCHhHH-HHHHHHH--h-
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEVW---DDKTKQGR-AIDSSRR--L- 189 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~~--L- 189 (414)
++-|.|.+|+||||||.++..... ....=..++|| ..+....+++++...+.. ...+.++. .+.+... +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 789999999999999999877662 11111345677 222223477777654321 33455665 4333332 3
Q ss_pred CCCcEEEEEecCCCcc
Q 043070 190 GQRRFALLLDDLREPI 205 (414)
Q Consensus 190 ~~kr~LlVlDdv~~~~ 205 (414)
+++.-|||+|-+-...
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 4578899999986653
No 107
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.95 E-value=0.005 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999876
No 108
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.005 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 109
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.92 E-value=0.0048 Score=55.97 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|+|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 110
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.92 E-value=0.0049 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 111
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0071 Score=53.13 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 55555665655677899999999999999999988764
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.90 E-value=0.0041 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|+|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999876
No 113
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.89 E-value=0.0094 Score=55.19 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988766
No 114
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.87 E-value=0.0055 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999877
No 115
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.011 Score=53.18 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCccchH-HHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLV---ED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .+.++.+.. .. .-.+-+.|+|.+|+||||||+.+++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5678887 665555543 11 112338999999999999999999877
No 116
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.84 E-value=0.0059 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999776
No 117
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.0053 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998866
No 118
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.82 E-value=0.0047 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998866
No 119
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.82 E-value=0.006 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999875
No 120
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.81 E-value=0.0049 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 121
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.81 E-value=0.0063 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999877
No 122
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.80 E-value=0.006 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 123
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.80 E-value=0.0076 Score=56.70 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=36.7
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|++ .++.+...+... .-+.++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 5688999 888888888654 368899999999999999999876
No 124
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.80 E-value=0.0064 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
....|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999987
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.78 E-value=0.0054 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 126
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.77 E-value=0.0058 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 127
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.76 E-value=0.0064 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 128
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.75 E-value=0.0055 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.013 Score=55.13 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCC----CcchHhH-------HHHHHHHHHHhcCCCCc-------cCcCCH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHN----FGLVILV-------KRIQHVMGYRLAMSNEV-------WDDKTK 178 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~----F~~~~wv-------~~l~~~i~~~l~~~~~~-------~~~~~~ 178 (414)
.-.++.|+|.+|+||||||..++.... .... -..++|+ ..-+..++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~-~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999987641 1100 1344555 12233445555443210 011222
Q ss_pred h---HHHHHHHHHhC--CCcEEEEEecC
Q 043070 179 Q---GRAIDSSRRLG--QRRFALLLDDL 201 (414)
Q Consensus 179 ~---~~~~~l~~~L~--~kr~LlVlDdv 201 (414)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 34455555554 45678888876
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.75 E-value=0.0063 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.75 E-value=0.0061 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478999999999999999998633
No 132
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.74 E-value=0.013 Score=55.54 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=31.5
Q ss_pred cchH-HHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 101 VDVS-RLNEVWRLVE----DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 101 vGr~-~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|+.+ -.+++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 5556666653 3456679999999999999999998876
No 133
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.74 E-value=0.0057 Score=58.42 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L~ 190 (414)
.-.++.|.|.+|+||||||..++.... ... ..++|+ ..+-...+..++...+.. ...+.+++.+.+....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~~g--~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCC--CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999887652 111 234455 000011244554432211 22345555555554443
Q ss_pred -CCcEEEEEecCCC
Q 043070 191 -QRRFALLLDDLRE 203 (414)
Q Consensus 191 -~kr~LlVlDdv~~ 203 (414)
.+.-+||+|.+-.
T Consensus 139 ~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 139 SGAVDVIVVDSVAA 152 (356)
T ss_dssp HTCCSEEEEECGGG
T ss_pred ccCCCEEEEcCHHH
Confidence 4566899998743
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.74 E-value=0.0072 Score=50.03 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999877
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.73 E-value=0.0062 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.71 E-value=0.0044 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 137
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.71 E-value=0.0066 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 138
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.71 E-value=0.0068 Score=55.11 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|.|+|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 139
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.70 E-value=0.012 Score=57.84 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|+|.+|+|||||++.+..+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 468999999999999999998876
No 140
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.70 E-value=0.011 Score=58.51 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCccchH-HHHHHHHHh---hcC--CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLV---EDN--SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+..++ ... ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 6789999 777655544 332 23578899999999999999999987
No 141
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.70 E-value=0.0069 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 142
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.70 E-value=0.007 Score=54.70 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998865
No 143
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.70 E-value=0.0068 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 144
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.68 E-value=0.007 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+|+|+|+.|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 145
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.67 E-value=0.0077 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|.|+|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.67 E-value=0.0055 Score=57.95 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .+..+...+......-+.|+|.+|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 5688998 66555444433233348999999999999999999876
No 147
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.66 E-value=0.0068 Score=52.84 Aligned_cols=26 Identities=46% Similarity=0.578 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998754
No 148
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.65 E-value=0.011 Score=56.41 Aligned_cols=44 Identities=20% Similarity=0.098 Sum_probs=35.7
Q ss_pred CccchH-HHHHHHHHhhc---------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVED---------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|.+ .++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 368988 88888887721 134678999999999999999999887
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.65 E-value=0.014 Score=54.46 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHHHHhhc--------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED--------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++|.+.|.. ....+|+|+|.+|+||||++..++...
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 66666676632 235799999999999999999998776
No 150
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.63 E-value=0.0084 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.++|.|.|++|+||||.|+.+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999887
No 151
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.62 E-value=0.0082 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.61 E-value=0.0077 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 153
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.59 E-value=0.0072 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++.+||+|.|-||+||||.|..+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 467999999999999999988776655
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.59 E-value=0.0057 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLN 139 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~ 139 (414)
.-.+++|+|..|+|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.59 E-value=0.0082 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999877
No 156
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.58 E-value=0.0082 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.57 E-value=0.015 Score=53.17 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCccchH-HHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE---D---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|.+ .++++.+... . .-.+-+.|+|.+|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 5688988 6666655441 1 112238999999999999999999877
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.54 E-value=0.0065 Score=52.13 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 159
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.53 E-value=0.0095 Score=51.58 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|+.|+||||+|+.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999999874
No 160
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.53 E-value=0.0073 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 161
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.52 E-value=0.013 Score=54.18 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 162
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.0073 Score=52.01 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
No 163
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.50 E-value=0.0094 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998875
No 164
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.48 E-value=0.016 Score=55.61 Aligned_cols=45 Identities=22% Similarity=0.128 Sum_probs=35.0
Q ss_pred CCccchH-HHHHHHHHhhc------------------------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED------------------------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.|...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578888 77777766610 123568899999999999999999877
No 165
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.48 E-value=0.0046 Score=54.04 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 166
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.48 E-value=0.0077 Score=52.34 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.47 E-value=0.019 Score=51.51 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.....|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 168
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.46 E-value=0.024 Score=54.29 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH-----HHHHHHHHHHhcCCCC-ccCcCCHh-
Q 043070 108 EVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV-----KRIQHVMGYRLAMSNE-VWDDKTKQ- 179 (414)
Q Consensus 108 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv-----~~l~~~i~~~l~~~~~-~~~~~~~~- 179 (414)
++++.+.. ..-..++|+|.+|+|||||++.+.+........++++ ++ .+=..++.+.+....- ...+....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 44455533 3446899999999999999999988652112333333 23 3333334444421000 00111111
Q ss_pred -----HHHHHHHHHh--CCCcEEEEEecCCCcc-chhhh
Q 043070 180 -----GRAIDSSRRL--GQRRFALLLDDLREPI-DLKTA 210 (414)
Q Consensus 180 -----~~~~~l~~~L--~~kr~LlVlDdv~~~~-~~~~~ 210 (414)
...-.+.+++ +++.+||++||+-... ....+
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~rev 280 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHH
Confidence 1111122233 5899999999985443 34444
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.46 E-value=0.023 Score=53.26 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHH
Q 043070 102 DVSRLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYR 165 (414)
Q Consensus 102 Gr~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~ 165 (414)
|...++++..-+ ..-.++.|.|.+|+||||||..++.... ... ..++|+ ..+...++..
T Consensus 54 G~~~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 54 GFTELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp SCHHHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESSSCHHHHHHHHHHH
T ss_pred ChHHHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECCCCHHHHHHHHHHH
Confidence 333455543212 3346899999999999999999987662 222 455566 5555555543
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.44 E-value=0.0086 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.44 E-value=0.0088 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999887
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.042 Score=51.16 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.+.+.+.+++.+...++|++|+||||+|..+.+..
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhC
Confidence 56777777776667899999999999999999998753
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.40 E-value=0.01 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999776
No 174
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.36 E-value=0.01 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 175
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.35 E-value=0.01 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 176
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.34 E-value=0.06 Score=52.89 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=55.1
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCC------CC
Q 043070 108 EVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMS------NE 171 (414)
Q Consensus 108 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~------~~ 171 (414)
++++.|.. .+-..++|+|..|+|||+|+.++.++.. +.+-+.++++ .++.+++...-... ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 44555533 3346899999999999999999998762 3344555555 55566665542221 00
Q ss_pred c--c--CcCCHh------HHHHHHHHHh---CCCcEEEEEecCCCc
Q 043070 172 V--W--DDKTKQ------GRAIDSSRRL---GQRRFALLLDDLREP 204 (414)
Q Consensus 172 ~--~--~~~~~~------~~~~~l~~~L---~~kr~LlVlDdv~~~ 204 (414)
. . .+.... ...-.+.+++ +++.+||++||+-.-
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 0 111111 1122233443 479999999998543
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.34 E-value=0.031 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999988765
No 178
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.34 E-value=0.013 Score=52.93 Aligned_cols=26 Identities=38% Similarity=0.341 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.33 E-value=0.019 Score=50.21 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|.|+|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999998876
No 180
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.32 E-value=0.01 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.31 E-value=0.034 Score=54.35 Aligned_cols=26 Identities=38% Similarity=0.278 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999988766
No 182
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.29 E-value=0.067 Score=50.49 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 102 DVSRLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 102 Gr~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|..+++++..-| ..-.++.|.|.+|+||||||..++...
T Consensus 32 G~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 333455544322 234689999999999999999998876
No 183
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.28 E-value=0.012 Score=52.84 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754
No 184
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.26 E-value=0.028 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 185
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.23 E-value=0.012 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.22 E-value=0.012 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|..|+|||||++.+....
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45799999999999999999998766
No 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.20 E-value=0.011 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998776
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.19 E-value=0.013 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 189
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.18 E-value=0.012 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998766
No 190
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.17 E-value=0.015 Score=58.12 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=36.0
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+...+..+ .-|.|+|.+|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 4578999 888887777654 368899999999999999999876
No 191
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.16 E-value=0.014 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 192
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.11 E-value=0.019 Score=49.96 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+..+..++.. ++...+.|+|++|+||||+|..+++..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555543 233479999999999999999998876
No 193
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.08 E-value=0.011 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 194
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.08 E-value=0.035 Score=54.76 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---------HHHHHHHHHHhcCC-------CC
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---------KRIQHVMGYRLAMS-------NE 171 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---------~~l~~~i~~~l~~~-------~~ 171 (414)
+++.|.. .+-..++|+|..|+|||+|+.++.++.. +.+-+.++++ .++.+++...-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3444533 3346799999999999999999998762 3445666666 55566665432221 00
Q ss_pred c--c--CcCC------HhHHHHHHHHHhC---CCcEEEEEecCCCc
Q 043070 172 V--W--DDKT------KQGRAIDSSRRLG---QRRFALLLDDLREP 204 (414)
Q Consensus 172 ~--~--~~~~------~~~~~~~l~~~L~---~kr~LlVlDdv~~~ 204 (414)
. . .+.. .....-.+.++++ ++.+||++||+-.-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 0 0111 1122334555554 58999999998543
No 195
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.04 E-value=0.015 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 196
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.03 E-value=0.021 Score=55.98 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCccchH-HHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED--------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678988 77777666622 134568999999999999999999877
No 197
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.02 E-value=0.013 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999866
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.98 E-value=0.016 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|.+|+|||||++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 199
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.98 E-value=0.015 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.97 E-value=0.016 Score=48.35 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999998765
No 201
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.96 E-value=0.015 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999877
No 202
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.92 E-value=0.017 Score=51.59 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 203
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.91 E-value=0.016 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 204
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.90 E-value=0.028 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|..|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 205
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.90 E-value=0.019 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 206
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.89 E-value=0.028 Score=52.64 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|+|.+|+||||||..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999988653
No 207
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.89 E-value=0.017 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 208
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.01 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 209
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.83 E-value=0.016 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.77 E-value=0.017 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998744
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.77 E-value=0.064 Score=56.47 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCC-cchHhHHHHHHHH
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNF-GLVILVKRIQHVM 162 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F-~~~~wv~~l~~~i 162 (414)
..+.|.+ .+++|.+.+.- ...+-|.++|++|.|||.||+++++.. ...| ... ..++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~------~~~l 547 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK------GPEL 547 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECC------HHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEec------cchh
Confidence 4567888 77777776521 234568899999999999999999988 3333 111 0111
Q ss_pred HHHhcCCCCccCcCCHhHHHHHHHHHhCCCcEEEEEecCCC
Q 043070 163 GYRLAMSNEVWDDKTKQGRAIDSSRRLGQRRFALLLDDLRE 203 (414)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 203 (414)
+... ...+...+.+.+...-+..++.|++|+++.
T Consensus 548 ~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 548 LTMW-------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred hccc-------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1111 223333333333333356789999999864
No 212
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.02 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++++|.+|+||||++..++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.76 E-value=0.02 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|.|..|+|||||++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998766
No 214
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.75 E-value=0.018 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998765
No 215
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.74 E-value=0.02 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+|.|.|++|+||||.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.74 E-value=0.017 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999884
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.72 E-value=0.019 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 218
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.69 E-value=0.022 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|+|..|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 219
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.69 E-value=0.021 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+|+|+|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998865
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.68 E-value=0.039 Score=54.67 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998766
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.68 E-value=0.041 Score=51.04 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++++|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999988766
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.68 E-value=0.022 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998765
No 223
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.64 E-value=0.051 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-.++.|+|.+|+|||||+..++-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3469999999999999999977633
No 224
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.59 E-value=0.021 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.. .+++|+|..|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999988654
No 225
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.56 E-value=0.013 Score=52.06 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-Hhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLN-KKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~-~~~ 142 (414)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 543
No 226
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.54 E-value=0.036 Score=54.31 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++.++|.. ...++|+++|.+|+||||++..++...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55666776632 246799999999999999999998776
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.53 E-value=0.048 Score=53.63 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+||||||..++.+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 34689999999999999999998877
No 228
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.46 E-value=0.014 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.46 E-value=0.023 Score=53.20 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.44 E-value=0.023 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 231
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.41 E-value=0.026 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++|+|+|-||+||||+|..++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 567899999999999999999887765
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.36 E-value=0.052 Score=51.64 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=28.3
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVE--DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++++.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444453 3567899999999999999999987654
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.33 E-value=0.023 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 234
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.30 E-value=0.03 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+++|+|..|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999998876
No 235
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.30 E-value=0.02 Score=50.76 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.27 E-value=0.02 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.+++|+|..|+|||||.+.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.26 E-value=0.026 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999876
No 238
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.26 E-value=0.032 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++.++|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998654
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.24 E-value=0.03 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998866
No 240
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.21 E-value=0.061 Score=53.10 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+.+.+.+.. ..+.|.|.+|+||||++..+....
T Consensus 33 av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 33 AFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5555555665433 389999999999999999998877
No 241
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.21 E-value=0.024 Score=55.29 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 242
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.20 E-value=0.034 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999866
No 243
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.16 E-value=0.037 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999999987
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.12 E-value=0.024 Score=50.80 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.10 E-value=0.036 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 246
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.09 E-value=0.029 Score=57.57 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCccchH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|.+ .++.+...+... ..+.|+|.+|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5678999 887777777654 588999999999999999999876
No 247
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.05 E-value=0.029 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-.+++|+|..|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 248
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.05 E-value=0.034 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 249
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.04 E-value=0.031 Score=54.61 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.|..|+|||+|+.++.+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH
Confidence 457899999999999999999887
No 250
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.01 E-value=0.033 Score=48.23 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=21.6
Q ss_pred chH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 102 DVS-RLNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 102 Gr~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
|++ -.+.+.++....+.--|+|+|.+|+|||||...+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344 44454454444555678999999999999998887654
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.00 E-value=0.025 Score=51.46 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.98 E-value=0.029 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999987654
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.92 E-value=0.027 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999988654
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.92 E-value=0.053 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998665
No 255
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.91 E-value=0.085 Score=46.81 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....++|.|++|+||||+|+.+.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999887
No 256
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.91 E-value=0.032 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..-.+++|+|..|+|||||.+.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34468999999999999999999875
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.91 E-value=0.027 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998655
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.91 E-value=0.037 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.90 E-value=0.027 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987655
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.90 E-value=0.029 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999988655
No 261
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.89 E-value=0.035 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988754
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.88 E-value=0.027 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.84 E-value=0.025 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987654
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.83 E-value=0.028 Score=51.14 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.+..-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344689999999999999999987654
No 265
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.81 E-value=0.04 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+-|+++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999988654
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.80 E-value=0.029 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.+..-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987655
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.77 E-value=0.062 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|+.|+|||||.+.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445799999999999999999988765
No 268
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.76 E-value=0.062 Score=54.28 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=34.0
Q ss_pred CCccchH-HHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVE------DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ -...+.+.+. +.....+.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467877 6666655441 1245689999999999999999999877
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.73 E-value=0.035 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++.|+|.+|+|||||+..+....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3699999999999999999998755
No 270
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.71 E-value=0.031 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998755
No 271
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.70 E-value=0.042 Score=51.10 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998754
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.70 E-value=0.031 Score=50.66 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.67 E-value=0.032 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999998755
No 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.66 E-value=0.076 Score=55.93 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=36.8
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+.+.+.. .....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999 99888888842 112369999999999999999999876
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.61 E-value=0.042 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998776
No 276
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.59 E-value=0.029 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988764
No 277
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.57 E-value=0.041 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 278
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.57 E-value=0.15 Score=50.05 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGY 164 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~ 164 (414)
.-.++.|.|.+|+||||||..++.... . ..=..++|+ ..+...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a-~-~~g~~vl~~slE~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA-L-KEGVGVGIYSLEMPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H-hCCCeEEEEECCCCHHHHHHHHHH
Confidence 346899999999999999999988762 1 111245555 555555544
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.55 E-value=0.034 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999988755
No 280
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.55 E-value=0.034 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.53 E-value=0.05 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+++|+|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998776
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.47 E-value=0.035 Score=50.97 Aligned_cols=26 Identities=38% Similarity=0.263 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999988655
No 283
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.47 E-value=0.041 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999987654
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.46 E-value=0.035 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.40 E-value=0.051 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 286
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.38 E-value=0.048 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|-||+||||+|..++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999999988766
No 287
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.37 E-value=0.042 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-+.|.|.|..|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998765
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.37 E-value=0.051 Score=52.15 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999765
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.34 E-value=0.037 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+|+|+|.+|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988765
No 290
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.33 E-value=0.044 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 291
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.33 E-value=0.047 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|+|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998876
No 292
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.31 E-value=0.043 Score=46.54 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.29 E-value=0.05 Score=44.81 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999988754
No 294
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.24 E-value=0.054 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.++.|.|.+|+||||||..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887655
No 295
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.24 E-value=0.06 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|+|.|-||+||||+|..++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 4688999999999999999988766
No 296
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.23 E-value=0.05 Score=49.70 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999866
No 297
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.23 E-value=0.054 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999998775
No 298
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.20 E-value=0.06 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|++|+||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998765
No 299
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.16 E-value=0.097 Score=52.19 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=28.8
Q ss_pred HHHHHHHHh--hcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLV--EDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+.+.+.. ..++..+|.+.|+.|+||||+|+.+....
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 434444444 22455789999999999999999999988
No 300
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.15 E-value=0.029 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...|+|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998776
No 301
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.15 E-value=0.049 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 302
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.14 E-value=0.15 Score=50.77 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGY 164 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~ 164 (414)
-.++.|.|.+|+||||||..++.+.. ..+=..++|+ .++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSCHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCCHHHHHHHHHH
Confidence 46899999999999999999988772 1212345565 555555543
No 303
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.13 E-value=0.092 Score=44.38 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=26.0
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 108 EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+ +......-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4445 334556789999999999999999988543
No 304
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.07 E-value=0.058 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.064 Score=45.57 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999988754
No 306
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.04 E-value=0.062 Score=46.68 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|.|+.|+||||+|+.++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999988
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.03 E-value=0.046 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
-.+++|+|..|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998864
No 308
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.02 E-value=0.091 Score=60.39 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSS 186 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 186 (414)
...+.|.|+|++|+|||+||.++..... ..=..++|+ ..+. ++.++.+.... ...+.++....++
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH---HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3567999999999999999999987761 221223333 1222 55555332111 2233455666666
Q ss_pred HHhC-CCcEEEEEecCC
Q 043070 187 RRLG-QRRFALLLDDLR 202 (414)
Q Consensus 187 ~~L~-~kr~LlVlDdv~ 202 (414)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 577899999994
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.00 E-value=0.055 Score=44.43 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988654
No 310
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.98 E-value=0.067 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|+|..|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776655
No 311
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.95 E-value=0.064 Score=50.90 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=26.1
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 111 RLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 111 ~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.+...+++.+.|.||+||||+|..++...
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 33445567899999999999999999888766
No 312
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.89 E-value=0.041 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 445799999999999999999987655
No 313
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.84 E-value=0.12 Score=54.32 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=36.2
Q ss_pred CCccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.+ .++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5678998 88888887732 123478999999999999999999876
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.80 E-value=0.065 Score=44.04 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988654
No 315
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.79 E-value=0.069 Score=43.85 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987654
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.77 E-value=0.066 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999998887654
No 317
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.76 E-value=0.073 Score=46.27 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.....|.|+|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999988754
No 318
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.75 E-value=0.062 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887654
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.73 E-value=0.062 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999888654
No 320
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.72 E-value=0.092 Score=46.43 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.....|.|.|..|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998877
No 321
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.073 Score=44.66 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.....|+|+|.+|+|||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999877643
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.71 E-value=0.073 Score=44.38 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999987654
No 323
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.69 E-value=0.064 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999987654
No 324
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.69 E-value=0.062 Score=45.40 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988754
No 325
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.68 E-value=0.082 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-..|+|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 326
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.67 E-value=0.054 Score=50.02 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.+..-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344689999999999999999987654
No 327
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.65 E-value=0.12 Score=48.66 Aligned_cols=38 Identities=11% Similarity=0.334 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 105 RLNEVWRLVEDNS-VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 105 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..+.+.+.+.+++ ...+.++|+.|+|||++|+.+++..
T Consensus 10 ~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 5667777776655 4579999999999999999999876
No 328
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.65 E-value=0.065 Score=44.49 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999887544
No 329
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.062 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987643
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.64 E-value=0.063 Score=51.04 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 331
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.62 E-value=0.067 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.++.|+|.+|+|||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998765
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.58 E-value=0.063 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 333
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.57 E-value=0.092 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
....+++|+|..|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34569999999999999999999873
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.56 E-value=0.072 Score=45.03 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+|+|..|+|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.55 E-value=0.067 Score=44.66 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999887654
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.54 E-value=0.071 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...++|+|..|+|||||++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 337
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.53 E-value=0.067 Score=45.38 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999998877654
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.53 E-value=0.068 Score=50.94 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|+.|+|||||.+.+..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344689999999999999999987543
No 339
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.51 E-value=0.071 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 340
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.50 E-value=0.071 Score=44.02 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 043070 119 RIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998864
No 341
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.49 E-value=0.072 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.173 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||.+.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999997766544
No 342
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.49 E-value=0.066 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 043070 120 IICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~ 140 (414)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999988754
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.47 E-value=0.12 Score=49.21 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchH-hHHHHHHHHHHH-hc-CCCCccCcCCHhHHHHHHHHHhCCC
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVI-LVKRIQHVMGYR-LA-MSNEVWDDKTKQGRAIDSSRRLGQR 192 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~-wv~~l~~~i~~~-l~-~~~~~~~~~~~~~~~~~l~~~L~~k 192 (414)
..-.+++|+|+.|+|||||.+.+........ ...+ .+.+-.+-.... .. ..... ...+.......|...|...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~---~~~i~t~ed~~e~~~~~~~~~v~q~~-~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK---YHHILTIEDPIEFVHESKKCLVNQRE-VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC---CCEEEEEESSCCSCCCCSSSEEEEEE-BTTTBSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC---CcEEEEccCcHHhhhhccccceeeee-eccccCCHHHHHHHHhhhC
Confidence 3445999999999999999999877652110 0111 000000000000 00 00000 0111234455788899999
Q ss_pred cEEEEEecCCCccchhh
Q 043070 193 RFALLLDDLREPIDLKT 209 (414)
Q Consensus 193 r~LlVlDdv~~~~~~~~ 209 (414)
+=+|++|.+.+.+.++.
T Consensus 197 PdvillDEp~d~e~~~~ 213 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRL 213 (356)
T ss_dssp CSEEEESCCCSHHHHHH
T ss_pred cCEEecCCCCCHHHHHH
Confidence 99999999986554443
No 344
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.47 E-value=0.088 Score=56.26 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=35.8
Q ss_pred CccchH-HHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 99 NTVDVS-RLNEVWRLVED---------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 99 ~~vGr~-~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++|.+ .++.+...+.. .....+.|+|.+|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999 88888888732 123578999999999999999999876
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.47 E-value=0.069 Score=44.56 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999988754
No 346
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.47 E-value=0.07 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987654
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.45 E-value=0.075 Score=44.31 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 468999999999999999987654
No 348
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.44 E-value=0.081 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|.+.|.||+||||+|..++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47788999999999998888876
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.42 E-value=0.071 Score=43.95 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987644
No 350
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.41 E-value=0.13 Score=49.91 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=26.7
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 108 EVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+.+ ...-.+++|+|+.|+|||||.+.+....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 3455799999999999999999998866
No 351
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.39 E-value=0.099 Score=44.08 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999888754
No 352
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.38 E-value=0.069 Score=52.13 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++|.|..|+|||+|+.++.+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999998877
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.38 E-value=0.073 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|+.|+|||||.+.++--.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999988543
No 354
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.37 E-value=0.089 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999998653
No 355
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.37 E-value=0.087 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.++|++|+||||+++.+.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998765
No 356
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.37 E-value=0.15 Score=46.25 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVEDN--SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-+..||... +..-|.++|++|.|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455566442 34579999999999999999999864
No 357
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.37 E-value=0.12 Score=47.99 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++.+.+. -.+++++|..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 445555553 2589999999999999999998 54
No 358
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.36 E-value=0.08 Score=43.56 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988644
No 359
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.35 E-value=0.11 Score=45.03 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999887755
No 360
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.29 E-value=0.12 Score=58.48 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSR 187 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 187 (414)
.-.++.|.|.+|+||||||..++.... ... ..++|+ ..+ .++.++...... ...+.+++...++.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa-~~g--~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTT--CCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHH-HcC--CCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 346999999999999999999988762 111 234454 222 255555432211 23456677777765
Q ss_pred HhC-CCcEEEEEecCCCc
Q 043070 188 RLG-QRRFALLLDDLREP 204 (414)
Q Consensus 188 ~L~-~kr~LlVlDdv~~~ 204 (414)
... .+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 543 46679999998653
No 361
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.28 E-value=0.076 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3568999999999999998887654
No 362
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.28 E-value=0.076 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998654
No 363
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.28 E-value=0.08 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999987654
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.26 E-value=0.078 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999988654
No 365
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.26 E-value=0.12 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|+|-|..|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999887
No 366
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.24 E-value=0.078 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568999999999999999988654
No 367
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.20 E-value=0.21 Score=49.21 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=23.3
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHHhh
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLL-YNLNKKF 142 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA-~~v~~~~ 142 (414)
.++.|.. ..-..++|.|..|+|||+|| ..+.|..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~ 187 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR 187 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc
Confidence 3444432 33357899999999999997 4566543
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.17 E-value=0.083 Score=45.01 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999887644
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.17 E-value=0.08 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998543
No 370
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.15 E-value=0.08 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998643
No 371
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.15 E-value=0.096 Score=46.74 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|.|.|+.|+||||+++.+.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 372
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.12 E-value=0.1 Score=51.19 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=25.9
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.++.|.. ..-..++|.|..|+|||+|+.+++++.
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3454533 233567889999999999999999987
No 373
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.12 E-value=0.081 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988654
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.12 E-value=0.069 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+-.+|+|+|+.|+|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44789999999999999999999887
No 375
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.10 E-value=0.1 Score=59.99 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH------HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV------KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSR 187 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv------~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 187 (414)
.-.++.|.|.+|+||||||.+++.... ..=..++|+ ..+ .++.++...... ...+.+++.+.++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 457999999999999999999988772 222345566 222 255665543211 33566777777765
Q ss_pred Hh-CCCcEEEEEecCCC
Q 043070 188 RL-GQRRFALLLDDLRE 203 (414)
Q Consensus 188 ~L-~~kr~LlVlDdv~~ 203 (414)
.. +.+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 55 34667999998753
No 376
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.10 E-value=0.075 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-..|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999877
No 377
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.08 E-value=0.098 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....+++|+|.+|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 556899999999999999999998543
No 378
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.07 E-value=0.083 Score=50.35 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999988543
No 379
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.04 E-value=0.13 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
+...|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999988643
No 380
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.02 E-value=0.11 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|++|+||||+|+.+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999999886
No 381
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.02 E-value=0.1 Score=49.17 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=25.5
Q ss_pred HhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 112 LVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 112 ~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+...+++.+.|-||+||||+|..++...
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 3444556788899999999999999988776
No 382
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.01 E-value=0.086 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999998887644
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.00 E-value=0.085 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987644
No 384
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.00 E-value=0.092 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988644
No 385
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.00 E-value=0.087 Score=44.18 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568999999999999999988654
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.99 E-value=0.086 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-.+++|+|..|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 368999999999999999998754
No 387
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.94 E-value=0.087 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44689999999999999999998543
No 388
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.93 E-value=0.089 Score=43.99 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999998887643
No 389
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.93 E-value=0.051 Score=55.54 Aligned_cols=45 Identities=9% Similarity=-0.031 Sum_probs=33.3
Q ss_pred CCccchH-HHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVEDNSVR-----------IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.++|.+ .+..+.-.|.....+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 5678988 666655545433211 58899999999999999998765
No 390
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.92 E-value=0.088 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3578999999999999999988544
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.92 E-value=0.11 Score=49.70 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.+....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445789999999999999999998765
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.92 E-value=0.066 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+++|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999988754
No 393
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.91 E-value=0.097 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999988755
No 394
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.91 E-value=0.088 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999887654
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.89 E-value=0.078 Score=44.72 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|+|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999887643
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.89 E-value=0.12 Score=42.69 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999987644
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.88 E-value=0.096 Score=44.48 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999888754
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.87 E-value=0.11 Score=49.13 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+..+|+|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999987654
No 399
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.86 E-value=0.09 Score=45.03 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999887654
No 400
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.86 E-value=0.087 Score=43.91 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999886543
No 401
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.84 E-value=0.072 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
....|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999988753
No 402
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.82 E-value=0.11 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|.|.|++|+||||+|+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 403
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.82 E-value=0.1 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..-|+|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988754
No 404
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.095 Score=43.72 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 405
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.77 E-value=0.093 Score=45.04 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999987654
No 406
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.73 E-value=0.073 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998543
No 407
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.72 E-value=0.11 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLH-GVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~-G~gGiGKTtLA~~v~~~~ 142 (414)
++|+|+ +-||+||||+|..++...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 678888 678999999999988776
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.12 Score=44.07 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....-|+|+|.+|+|||||...+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999988754
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.65 E-value=0.078 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-..++|+|..|+|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998765
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.64 E-value=0.096 Score=45.35 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988754
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.63 E-value=0.12 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..|.|.|..|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 412
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.62 E-value=0.1 Score=44.72 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44678999999999999999988755
No 413
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.61 E-value=0.068 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
.....|+|+|..|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446899999999999999987754
No 414
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.60 E-value=0.17 Score=49.98 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=23.9
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHH-HHHHhh
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLLY-NLNKKF 142 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA~-~v~~~~ 142 (414)
.++.|.. ..-..++|+|..|+|||+||. .+.+..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3444533 334578999999999999965 666655
No 415
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.60 E-value=0.1 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998764
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.56 E-value=0.11 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344699999999999999999999987
No 417
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.099 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999988654
No 418
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.52 E-value=0.14 Score=45.21 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...+|+|.|+.|+||||+|+.++...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999987
No 419
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.52 E-value=0.1 Score=44.23 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988754
No 420
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.51 E-value=0.091 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|.|-||+||||+|..++...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 36779999999999999998877
No 421
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.51 E-value=0.1 Score=45.17 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988654
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.51 E-value=0.1 Score=44.33 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988754
No 423
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.49 E-value=0.12 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-.++.|.|.+|+|||+||.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999887544
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.11 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999887654
No 425
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.45 E-value=0.11 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999988654
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.43 E-value=0.13 Score=45.26 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-..|.+-|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 427
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.11 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4578999999999999999987644
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.41 E-value=0.11 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999987654
No 429
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.40 E-value=0.091 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999998754
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.37 E-value=0.067 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998543
No 431
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.36 E-value=0.11 Score=50.08 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|+.|+|||||.+.+..-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344689999999999999999998643
No 432
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.34 E-value=0.082 Score=56.06 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCccchH-HHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 98 ENTVDVS-RLNEVWRLVED-------------NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|.+ .++.|.+.+.- .....+.++|++|+||||||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 5577888 88888877631 234568899999999999999999987
No 433
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.34 E-value=0.099 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999998866553
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.33 E-value=0.11 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
--|+|+|.+|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999887654
No 435
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.31 E-value=0.1 Score=44.45 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHH
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
....-|+|+|.+|+|||||...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3446799999999999999998864
No 436
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.27 E-value=0.11 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987654
No 437
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.23 E-value=0.11 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|.+|+|||||...+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999887654
No 438
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.22 E-value=0.16 Score=50.30 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=24.4
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHH-HHHHhh
Q 043070 108 EVWRLVED-NSVRIICLHGVSRLGKTTLLY-NLNKKF 142 (414)
Q Consensus 108 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~-~v~~~~ 142 (414)
+.++.|.. ..-..++|+|..|+|||+||. .+.+..
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 34455533 334578999999999999965 666654
No 439
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.20 E-value=0.18 Score=46.71 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 106 LNEVWRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 106 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
++++.+.+. -.+++|+|+.|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 444555553 2589999999999999999998655
No 440
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.20 E-value=0.12 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999987654
No 441
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.19 E-value=0.12 Score=44.34 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999987654
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.1 Score=51.38 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||++.++.-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 344789999999999999999998765
No 443
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.13 E-value=0.11 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999998887543
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.99 E-value=0.12 Score=44.39 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.93 E-value=0.11 Score=44.57 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..--|+|+|.+|+|||||...+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999887543
No 446
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.89 E-value=0.15 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHhh
Q 043070 120 IICLH-GVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~-G~gGiGKTtLA~~v~~~~ 142 (414)
+|+|+ +-||+||||+|..++...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL 25 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Confidence 56675 789999999999998877
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.88 E-value=0.14 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
.-|.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999998875
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.86 E-value=0.13 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|.+|+|||||...+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999988654
No 449
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.85 E-value=0.087 Score=49.58 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhHHHHHHHHHHHhcCC-CCcc-CcC--CHhHHHHHHHHHhCCCcE
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILVKRIQHVMGYRLAMS-NEVW-DDK--TKQGRAIDSSRRLGQRRF 194 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv~~l~~~i~~~l~~~-~~~~-~~~--~~~~~~~~l~~~L~~kr~ 194 (414)
..++|+|..|+|||||++.+..... . -.+.+.+... ..+... .... .-. ........|...|..++-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~-~~g~i~i~~~-----~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---K-EERIISIEDT-----EEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---T-TSCEEEEESS-----CCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---C-CCcEEEECCe-----eccccccchhEEEEEeCCChhHHHHHHHHhhhCCC
Confidence 5899999999999999999987651 1 1222222000 000000 0000 000 123344567777888888
Q ss_pred EEEEecCCCccc
Q 043070 195 ALLLDDLREPID 206 (414)
Q Consensus 195 LlVlDdv~~~~~ 206 (414)
+|+||.+.+.+.
T Consensus 243 ilildE~~~~e~ 254 (330)
T 2pt7_A 243 RIILGELRSSEA 254 (330)
T ss_dssp EEEECCCCSTHH
T ss_pred EEEEcCCChHHH
Confidence 899998876443
No 450
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.82 E-value=0.14 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998653
No 451
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.81 E-value=0.3 Score=49.25 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+...+|.+.|++|+||||+|+.+....
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 452
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.81 E-value=0.14 Score=46.48 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999987654
No 453
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.14 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999998887654
No 454
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.77 E-value=0.13 Score=45.13 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999987653
No 455
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.75 E-value=0.15 Score=43.28 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999887644
No 456
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.75 E-value=0.13 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4578999999999999999887643
No 457
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.72 E-value=0.12 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988654
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.71 E-value=0.13 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999998887644
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.70 E-value=0.12 Score=44.97 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999887543
No 460
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.68 E-value=0.17 Score=42.59 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999887543
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.67 E-value=0.14 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999988764
No 462
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.66 E-value=0.14 Score=44.15 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999887644
No 463
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.65 E-value=0.14 Score=48.59 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|+|.+|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999988655
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.63 E-value=0.14 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999887654
No 465
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.62 E-value=0.16 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999988654
No 466
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.51 E-value=0.15 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999987654
No 467
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.48 E-value=0.086 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=10.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999998877543
No 468
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.44 E-value=0.13 Score=48.98 Aligned_cols=44 Identities=30% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCccchH-HHHHHHH-HhhcCCceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 98 ENTVDVS-RLNEVWR-LVEDNSVRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 98 ~~~vGr~-~~~~l~~-~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
...+|.+ --..... .+..+..--|+|+|..|+|||||...++..
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567766 3333222 222333345799999999999999998653
No 469
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.43 E-value=0.13 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 043070 121 ICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 121 i~I~G~gGiGKTtLA~~v~~~ 141 (414)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999764
No 470
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.42 E-value=0.2 Score=47.93 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHG-VSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G-~gGiGKTtLA~~v~~~~ 142 (414)
.+.++|+|+| -||+||||+|..++...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 3578999985 99999999999888765
No 471
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.41 E-value=0.15 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-|.|+|-+|+|||+|...+.++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47899999999999999887543
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.31 E-value=0.16 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-.+++|+|..|+|||||.+.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344699999999999999999999877
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.30 E-value=0.15 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-|+|+|..|+|||||...+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999887544
No 474
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.22 E-value=0.19 Score=44.90 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+|+|+|+.|+||||+|+.+....
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999987753
No 475
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.11 E-value=0.26 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998654
No 476
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.11 E-value=0.17 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+++|+|..|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998765
No 477
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.57 E-value=0.056 Score=46.53 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 110 WRLVEDNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 110 ~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+.+.+.--|+|+|.+|+|||||...+.+..
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 333444455678999999999999998776543
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.99 E-value=0.16 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||++.++...
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 479
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.97 E-value=0.22 Score=42.99 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 043070 120 IICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 120 vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.|+|=|..|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 480
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.92 E-value=0.3 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..++.+.|.||+||||+|..++...
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHH
Confidence 3455666999999999998887665
No 481
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.90 E-value=0.17 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKK 141 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~ 141 (414)
-.+++|+|..|+|||||.+.+...
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 482
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.78 E-value=0.18 Score=46.82 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35689999999999999999987654
No 483
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.76 E-value=0.25 Score=43.67 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.6
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHG-VSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G-~gGiGKTtLA~~v~~~~ 142 (414)
..++|+|++ -||+||||+|..++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence 457888874 68999999999998877
No 484
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.76 E-value=0.27 Score=48.67 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHHhh
Q 043070 109 VWRLVED-NSVRIICLHGVSRLGKTTLL-YNLNKKF 142 (414)
Q Consensus 109 l~~~L~~-~~~~vi~I~G~gGiGKTtLA-~~v~~~~ 142 (414)
.++.|.. ..-..++|+|..|+|||+|| ..+.|..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 4444533 33457899999999999995 4666665
No 485
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.72 E-value=0.22 Score=43.48 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.5
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGV-SRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~-gGiGKTtLA~~v~~~~ 142 (414)
++|+|.|. ||+||||+|..++...
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAA 26 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57888885 8999999999988776
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.70 E-value=0.15 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||++.++...
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.68 E-value=0.15 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
..-|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999998887654
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.68 E-value=0.15 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999887643
No 489
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.54 E-value=0.21 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.-.++.|.|.+|+||||||..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 490
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.51 E-value=0.26 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNK 140 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~ 140 (414)
....|+++|.-|+||||+++.+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.42 E-value=0.19 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
-.+++|+|..|+|||||.+.++...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 492
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.39 E-value=0.4 Score=47.40 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLY-NLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~-~v~~~~ 142 (414)
-..++|+|..|+|||+||. .+.+..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh
Confidence 3578999999999999965 666654
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.39 E-value=0.25 Score=40.49 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.+.+|+|..|+||||+..+++--.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999998886533
No 494
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.39 E-value=0.2 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 119 RIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 119 ~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+.|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 578999999999999999987653
No 495
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.33 E-value=0.18 Score=45.35 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCceEEEEE-cCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLH-GVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~-G~gGiGKTtLA~~v~~~~ 142 (414)
...++|+|+ +-||+||||+|..++...
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~l 31 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYL 31 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHH
Confidence 355789997 688999999999988776
No 496
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.33 E-value=0.26 Score=46.20 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=22.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 115 DNSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 115 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
+....++.+.|.||+||||+|..++...
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445666778999999999999988776
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.33 E-value=0.24 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999987543
No 498
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.32 E-value=0.22 Score=43.52 Aligned_cols=25 Identities=36% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 118 VRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 118 ~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
.--|+|+|.+|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999887654
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.30 E-value=0.18 Score=57.24 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhhhhcCCCCcchHhH---HHHHHHHHHHhcCCCCcc---CcCCHhHHHHHHHHHhC
Q 043070 117 SVRIICLHGVSRLGKTTLLYNLNKKFNDTRHNFGLVILV---KRIQHVMGYRLAMSNEVW---DDKTKQGRAIDSSRRLG 190 (414)
Q Consensus 117 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~v~~~F~~~~wv---~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L~ 190 (414)
.-++|-|+|+.|+||||||.++.... ...=...+|+ ..+-...++.+|...+.. .+.+-++....+...++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 34799999999999999999988655 2222344455 222233377777655432 33445666666777665
Q ss_pred -CCcEEEEEecCCC
Q 043070 191 -QRRFALLLDDLRE 203 (414)
Q Consensus 191 -~kr~LlVlDdv~~ 203 (414)
+..-+||+|-|..
T Consensus 1507 s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HTCCSEEEESCSTT
T ss_pred cCCCCEEEEccHHh
Confidence 4677899997743
No 500
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.30 E-value=0.23 Score=47.08 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhh
Q 043070 116 NSVRIICLHGVSRLGKTTLLYNLNKKF 142 (414)
Q Consensus 116 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 142 (414)
....++...|-||+||||+|..++...
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334556667999999999999887766
Done!