BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043071
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
          Length = 452

 Score = 31.2 bits (69), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 11  VAKLNC--PSAANLANLLPTGTVLAYQALMPSLS--NNGTCLAAHKYLSIVALAGCSI 64
           +A+L C  P  +++  LLP GTVL++ +  P +S  N+GT   +H  LS   +  C +
Sbjct: 369 MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426


>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
          Leucine- Rich Repeat-Containing Protein 4
          Length = 103

 Score = 30.4 bits (67), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 11 VAKLNC--PSAANLANLLPTGTVLAYQALMPSLS--NNGTCLAAHKYLSIVALAGCSI 64
          +A+L C  P  +++  LLP GTVL++ +  P +S  N+GT   +H  LS   +  C +
Sbjct: 24 MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 81


>pdb|3O4O|B Chain B, Crystal Structure Of An Interleukin-1 Receptor Complex
          Length = 339

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 4   SADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNG--TCLAAH 51
           S+ KP     + C    N  N++P G  L++  L+  +SNNG  TC+  +
Sbjct: 152 SSVKPTITWYMGCYKIQNFNNVIPEGMNLSF--LIALISNNGNYTCVVTY 199


>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
 pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
          Length = 349

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 4   SADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNG--TCLAAH 51
           S+ KP     + C    N  N++P G  L++  L+  +SNNG  TC+  +
Sbjct: 151 SSVKPTITWYMGCYKIQNFNNVIPEGMNLSF--LIALISNNGNYTCVVTY 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,326,448
Number of Sequences: 62578
Number of extensions: 192853
Number of successful extensions: 648
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 8
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)