BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043071
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CO38|IWS1_CRYNJ Transcription factor IWS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=IWS1 PE=3 SV=1
          Length = 475

 Score = 32.3 bits (72), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 1   MVQSADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLS 55
           M+ +ADK +A  ++  P  A LA L     VL    L  S+ +NG   A  ++L 
Sbjct: 243 MIAAADKDEAANRIKMPGTAKLAMLDEVMGVLRNTTLWQSIVDNGVLEAVKRWLE 297


>sp|P0CO39|IWS1_CRYNB Transcription factor IWS1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=IWS1 PE=3 SV=1
          Length = 475

 Score = 32.3 bits (72), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 1   MVQSADKPKAVAKLNCPSAANLANLLPTGTVLAYQALMPSLSNNGTCLAAHKYLS 55
           M+ +ADK +A  ++  P  A LA L     VL    L  S+ +NG   A  ++L 
Sbjct: 243 MIAAADKDEAANRIKMPGTAKLAMLDEVMGVLRNTTLWQSIVDNGVLEAVKRWLE 297


>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 OS=Homo sapiens GN=LRRC4
           PE=1 SV=2
          Length = 653

 Score = 32.0 bits (71), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 11  VAKLNC--PSAANLANLLPTGTVLAYQALMPSLS--NNGTCLAAHKYLSIVALAGCSI 64
           +A+L C  P  +++  LLP GTVL++ +  P +S  N+GT   +H  LS   +  C +
Sbjct: 369 MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426


>sp|Q65QD4|ILVD_MANSM Dihydroxy-acid dehydratase OS=Mannheimia succiniciproducens (strain
           MBEL55E) GN=ilvD PE=3 SV=1
          Length = 615

 Score = 30.4 bits (67), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MVQSADKP------KAVAKLNCPSAANLANLLPTGTV-LAYQALMPSLSNNGTCLAAH 51
           M+QSADK        A+ +  CP+  + + +    ++    +AL  SL  NG+CLA H
Sbjct: 172 MIQSADKNVSDSDVDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSCLATH 229


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,649,873
Number of Sequences: 539616
Number of extensions: 3031328
Number of successful extensions: 7534
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7523
Number of HSP's gapped (non-prelim): 20
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)