Query 043071
Match_columns 194
No_of_seqs 107 out of 126
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 35.2 13 0.00046 31.5 1.4 16 124-139 226-241 (275)
2 1wr4_A Ubiquitin-protein ligas 27.2 30 0.001 20.2 1.6 10 75-84 12-21 (36)
3 1e0m_A Wwprototype; SH3 protot 26.8 29 0.001 20.4 1.6 10 76-85 12-21 (37)
4 1e0l_A Formin binding protein; 25.8 30 0.001 20.9 1.5 10 75-84 11-20 (37)
5 2le2_A P56; UDG inhibition, DN 24.9 34 0.0012 23.2 1.7 24 71-96 6-35 (56)
6 2ysh_A GAS-7, growth-arrest-sp 24.7 33 0.0011 20.7 1.5 10 75-84 15-24 (40)
7 1ymz_A CC45; artificial protei 23.8 35 0.0012 21.0 1.5 10 75-84 16-25 (43)
8 1wr3_A Ubiquitin-protein ligas 23.7 33 0.0011 20.2 1.3 9 76-84 13-21 (36)
9 2law_A Yorkie homolog; YAP, SM 23.1 33 0.0011 20.7 1.3 10 76-85 15-24 (38)
10 2ysg_A Syntaxin-binding protei 23.1 34 0.0011 20.9 1.3 9 76-84 16-24 (40)
11 2kyk_A E3 ubiquitin-protein li 22.5 35 0.0012 20.5 1.3 9 76-84 15-23 (39)
12 3arc_M Photosystem II reaction 22.4 10 0.00036 24.0 -1.1 14 178-191 6-19 (36)
13 2dmv_A Itchy homolog E3 ubiqui 20.9 39 0.0013 20.9 1.3 10 75-84 15-24 (43)
14 1wr7_A NEDD4-2; all-beta, liga 20.6 40 0.0014 20.6 1.3 10 76-85 17-26 (41)
15 2ysi_A Transcription elongatio 20.2 45 0.0015 20.6 1.5 10 75-84 15-24 (40)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=35.20 E-value=13 Score=31.49 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=12.6
Q ss_pred cccccceeeehhhhHH
Q 043071 124 CLDTYKIRWIDFVHAF 139 (194)
Q Consensus 124 ~~~~yrLr~~DfvHA~ 139 (194)
+..+.++|.|||.|++
T Consensus 226 ~~~~~~vrmIDFAh~~ 241 (275)
T 4frf_A 226 DDARPQVKLVDFAHVL 241 (275)
T ss_dssp -CCCCEEEEECCTTCE
T ss_pred CCCcccEEEEECCCCC
Confidence 3457899999999973
No 2
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=27.17 E-value=30 Score=20.19 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.8
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.++++|++||
T Consensus 12 ~~d~~g~~Yy 21 (36)
T 1wr4_A 12 RKDAKGRTYY 21 (36)
T ss_dssp EECSSSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899988
No 3
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=26.85 E-value=29 Score=20.39 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=7.6
Q ss_pred ecCCCcEEEE
Q 043071 76 YSSKGKLYYG 85 (194)
Q Consensus 76 ~~~dGkvyYG 85 (194)
.+.+|++||=
T Consensus 12 ~~~~G~~Yy~ 21 (37)
T 1e0m_A 12 KTHNGKTYYY 21 (37)
T ss_dssp ECSSCCEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999883
No 4
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=25.79 E-value=30 Score=20.86 Aligned_cols=10 Identities=50% Similarity=1.095 Sum_probs=7.4
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.++.||+.||
T Consensus 11 ~~~~~G~~YY 20 (37)
T 1e0l_A 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 3567898887
No 5
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=24.90 E-value=34 Score=23.23 Aligned_cols=24 Identities=42% Similarity=0.773 Sum_probs=17.1
Q ss_pred cccee------ecCCCcEEEEEEeccceeeec
Q 043071 71 FTDSY------YSSKGKLYYGIATTTGLHIFN 96 (194)
Q Consensus 71 FTDS~------~~~dGkvyYG~aT~~Gl~~f~ 96 (194)
|-||| +|.||+-||-.- +||-..+
T Consensus 6 f~dsy~~t~ll~dddg~q~~e~h--~glslsd 35 (56)
T 2le2_A 6 FVDSYDVTMLLQDDDGKQYYEYH--KGLSLSD 35 (56)
T ss_dssp SCSSEEEEEEEECTTSCEEEEEE--EEECHHH
T ss_pred cccceeEEEEEEcCCCceeeeee--cCccccc
Confidence 66776 588999999763 6665444
No 6
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=24.70 E-value=33 Score=20.69 Aligned_cols=10 Identities=50% Similarity=1.152 Sum_probs=7.9
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.++.+|++||
T Consensus 15 ~~d~~Gr~YY 24 (40)
T 2ysh_A 15 YLSPQGRRYY 24 (40)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899999
No 7
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=23.75 E-value=35 Score=20.96 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=7.8
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.++.+|++||
T Consensus 16 ~~~~~Gr~YY 25 (43)
T 1ymz_A 16 RTDVEGKVYY 25 (43)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899998
No 8
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=23.69 E-value=33 Score=20.23 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.4
Q ss_pred ecCCCcEEE
Q 043071 76 YSSKGKLYY 84 (194)
Q Consensus 76 ~~~dGkvyY 84 (194)
.+.+|++||
T Consensus 13 ~d~~G~~Yy 21 (36)
T 1wr3_A 13 VDNLGRTYY 21 (36)
T ss_dssp ECSSSCEEE
T ss_pred ECCCCCEEE
Confidence 467899999
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=23.11 E-value=33 Score=20.69 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=7.7
Q ss_pred ecCCCcEEEE
Q 043071 76 YSSKGKLYYG 85 (194)
Q Consensus 76 ~~~dGkvyYG 85 (194)
.+++|++||=
T Consensus 15 ~~~~G~~Yy~ 24 (38)
T 2law_A 15 MTQDGEIYYI 24 (38)
T ss_dssp EETTTEEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999983
No 10
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=23.07 E-value=34 Score=20.92 Aligned_cols=9 Identities=33% Similarity=0.969 Sum_probs=7.4
Q ss_pred ecCCCcEEE
Q 043071 76 YSSKGKLYY 84 (194)
Q Consensus 76 ~~~dGkvyY 84 (194)
++++|++||
T Consensus 16 ~~~~Gr~Yy 24 (40)
T 2ysg_A 16 YTADGIKYF 24 (40)
T ss_dssp ECSSSCEEE
T ss_pred EcCCCCEEE
Confidence 467899998
No 11
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=22.48 E-value=35 Score=20.54 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.5
Q ss_pred ecCCCcEEE
Q 043071 76 YSSKGKLYY 84 (194)
Q Consensus 76 ~~~dGkvyY 84 (194)
.+.+|++||
T Consensus 15 ~d~~G~~YY 23 (39)
T 2kyk_A 15 VDNMGRIYY 23 (39)
T ss_dssp ECTTSCEEE
T ss_pred EcCCCCEEE
Confidence 467899999
No 12
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=22.44 E-value=10 Score=23.97 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=12.0
Q ss_pred HHHhhhheeeeccc
Q 043071 178 VGVLQASYSCFSPL 191 (194)
Q Consensus 178 vG~l~S~vF~iFPt 191 (194)
.|++++.+|+..||
T Consensus 6 l~fiAt~Lfi~iPt 19 (36)
T 3arc_M 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38899999999987
No 13
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=39 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.9
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.++.+|++||
T Consensus 15 ~~d~~Gr~YY 24 (43)
T 2dmv_A 15 RVDQHGRVYY 24 (43)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899999
No 14
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=20.59 E-value=40 Score=20.59 Aligned_cols=10 Identities=10% Similarity=0.477 Sum_probs=7.7
Q ss_pred ecCCCcEEEE
Q 043071 76 YSSKGKLYYG 85 (194)
Q Consensus 76 ~~~dGkvyYG 85 (194)
++.+|++||=
T Consensus 17 ~~~~G~~Yy~ 26 (41)
T 1wr7_A 17 IAPNGRPFFI 26 (41)
T ss_dssp ECTTSCEEEE
T ss_pred EcCCCCEEEE
Confidence 4578999983
No 15
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=20.23 E-value=45 Score=20.55 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=7.5
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
++.+||+.||
T Consensus 15 ~~~~~G~~YY 24 (40)
T 2ysi_A 15 NKTPDGKVYY 24 (40)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 4567998887
Done!