Query 043071
Match_columns 194
No_of_seqs 107 out of 126
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 22:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043071.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043071hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ywia1 b.72.1.1 (A:15-42) Hun 60.7 1.8 0.00013 24.5 1.5 10 75-84 6-15 (28)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 57.9 2.2 0.00016 24.3 1.6 10 75-84 7-16 (29)
3 d2rm0w1 b.72.1.1 (W:1-37) Form 51.9 3.1 0.00022 24.6 1.6 10 75-84 11-20 (37)
4 d1o6wa2 b.72.1.1 (A:30-75) Spl 50.4 3.3 0.00024 25.7 1.6 11 75-85 19-29 (46)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 29.9 3 0.00022 25.0 -1.1 14 178-191 6-19 (36)
6 d2jmfa1 b.72.1.1 (A:521-553) U 28.6 11 0.0008 21.5 1.3 11 75-85 10-20 (33)
7 d2dk1a1 b.72.1.1 (A:7-44) WW d 24.2 8 0.00058 22.9 0.1 19 75-93 6-25 (38)
8 d1tk7a1 b.72.1.1 (A:1-45) Supp 18.6 22 0.0016 21.5 1.3 11 75-85 20-30 (45)
9 d1s12a_ d.64.2.1 (A:) Hypothet 17.9 53 0.0038 22.3 3.5 47 133-179 19-75 (94)
10 d1i5hw_ b.72.1.1 (W:) Ubiquiti 17.2 24 0.0018 21.6 1.3 11 75-85 19-29 (50)
No 1
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.72 E-value=1.8 Score=24.46 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=8.4
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.+++|||+||
T Consensus 6 ~~~~~G~~YY 15 (28)
T d1ywia1 6 HKSPDGRTYY 15 (28)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCCEEE
Confidence 4678999988
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.89 E-value=2.2 Score=24.26 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=8.5
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
.+++|||.||
T Consensus 7 ~~~~~G~~YY 16 (29)
T d1o6wa1 7 AKDASGRIYY 16 (29)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5688999988
No 3
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=51.89 E-value=3.1 Score=24.60 Aligned_cols=10 Identities=50% Similarity=1.095 Sum_probs=8.4
Q ss_pred eecCCCcEEE
Q 043071 75 YYSSKGKLYY 84 (194)
Q Consensus 75 ~~~~dGkvyY 84 (194)
++++||++||
T Consensus 11 ~~~~~Gr~YY 20 (37)
T d2rm0w1 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 4678999998
No 4
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.39 E-value=3.3 Score=25.73 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=8.7
Q ss_pred eecCCCcEEEE
Q 043071 75 YYSSKGKLYYG 85 (194)
Q Consensus 75 ~~~~dGkvyYG 85 (194)
++++|||+||=
T Consensus 19 ~~~~~Gr~YYy 29 (46)
T d1o6wa2 19 AKTADGKVYYY 29 (46)
T ss_dssp EECTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 56789999883
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.88 E-value=3 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=12.6
Q ss_pred HHHhhhheeeeccc
Q 043071 178 VGVLQASYSCFSPL 191 (194)
Q Consensus 178 vG~l~S~vF~iFPt 191 (194)
.|++++.+|++.||
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999997
No 6
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=28.56 E-value=11 Score=21.48 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=8.5
Q ss_pred eecCCCcEEEE
Q 043071 75 YYSSKGKLYYG 85 (194)
Q Consensus 75 ~~~~dGkvyYG 85 (194)
..+.+|++||-
T Consensus 10 ~~d~~G~~Yyi 20 (33)
T d2jmfa1 10 RYTAAGERFFV 20 (33)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35789999983
No 7
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=8 Score=22.90 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=10.7
Q ss_pred eecCCCcEEE-EEEecccee
Q 043071 75 YYSSKGKLYY-GIATTTGLH 93 (194)
Q Consensus 75 ~~~~dGkvyY-G~aT~~Gl~ 93 (194)
.+++||++|| =..|...-|
T Consensus 6 ~~~~~G~~YYyN~~T~eS~W 25 (38)
T d2dk1a1 6 GITSEGYHYYYDLISGASQW 25 (38)
T ss_dssp CCCSTTCCCEEESSSCCEES
T ss_pred EECCCCCEEEEECCCCCEec
Confidence 3567998776 333433334
No 8
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=18.63 E-value=22 Score=21.45 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=8.5
Q ss_pred eecCCCcEEEE
Q 043071 75 YYSSKGKLYYG 85 (194)
Q Consensus 75 ~~~~dGkvyYG 85 (194)
..+++|++||-
T Consensus 20 ~~d~~G~~Yyi 30 (45)
T d1tk7a1 20 KIQSDNRVYFV 30 (45)
T ss_dssp EEETTTEEEEE
T ss_pred EECCCCCEEEE
Confidence 35789999994
No 9
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=17.94 E-value=53 Score=22.27 Aligned_cols=47 Identities=17% Similarity=-0.038 Sum_probs=36.8
Q ss_pred ehhhhHHHHHHHHHHHHhcc----------CCCceeeCCCCCCCHHHHHHHhhhHHH
Q 043071 133 IDFVHAFTSLLVFLVFATTN----------SDARRCFFPHPGPNTNVLLMHLPILVG 179 (194)
Q Consensus 133 ~DfvHA~lS~~VF~avAl~D----------~~v~~CffP~~~~~~~ell~~lPl~vG 179 (194)
-|.|=|..|++++.++--.+ .+-..|-+|..++..+.+|+++=++.-
T Consensus 19 ~DIVCAaVS~l~~~~vN~l~~~~~~~~~~~~G~l~~~~~~~~~~~q~ll~~m~~gL~ 75 (94)
T d1s12a_ 19 DKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLK 75 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CceeehhhHHHHHHHHHHHHHHhCCcEEeeCCEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 49999999999999886443 234688899888888888888766653
No 10
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.24 E-value=24 Score=21.62 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=8.3
Q ss_pred eecCCCcEEEE
Q 043071 75 YYSSKGKLYYG 85 (194)
Q Consensus 75 ~~~~dGkvyYG 85 (194)
..+.+|++||-
T Consensus 19 ~~~~~G~~YY~ 29 (50)
T d1i5hw_ 19 RTHTDGRVFFI 29 (50)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35688999983
Done!