Your job contains 1 sequence.
>043072
MDVDMIKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQ
PIYHNPNNYVSSPPPTFTNPSSSLPLFINTTTPVQEPMTPPLHQPNNVVTGGRLKTSLPS
PSPYPPTLEKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRR
EMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGA
PMAGVAYPSLVKASHQMVDNINMQMFR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043072
(267 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2074865 - symbol:HEC2 "AT3G50330" species:3702... 437 4.2e-47 2
TAIR|locus:2155543 - symbol:HEC1 "HECATE 1" species:3702 ... 434 6.0e-46 2
UNIPROTKB|Q6Z9R3 - symbol:P0461F06.33 "BHLH protein famil... 414 2.8e-42 2
UNIPROTKB|Q67TR8 - symbol:B1342C04.6 "Basic helix-loop-he... 415 4.6e-42 2
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 360 5.2e-33 1
TAIR|locus:2126856 - symbol:IND "AT4G00120" species:3702 ... 322 5.6e-29 1
TAIR|locus:2089418 - symbol:AT3G21330 "AT3G21330" species... 315 3.1e-28 1
UNIPROTKB|Q8S0N2 - symbol:P0692C11.41-1 "BHLH transcripti... 302 7.3e-27 1
UNIPROTKB|Q657D1 - symbol:P0697C12.40 "BHLH transcription... 290 3.7e-25 1
UNIPROTKB|Q5TKP7 - symbol:OJ1362_G11.11 "Putative unchara... 274 9.0e-24 1
UNIPROTKB|Q69TX2 - symbol:P0021C04.13 "BHLH protein-like"... 248 3.9e-21 1
UNIPROTKB|Q5MP56 - symbol:BA1 "Uncharacterized protein" s... 215 1.2e-17 1
TAIR|locus:2179122 - symbol:APTX "APRATAXIN-like" species... 196 2.4e-14 1
UNIPROTKB|Q6ZFY4 - symbol:OJ1311_H06.19 "BHLH protein-lik... 184 3.4e-14 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 182 3.8e-14 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 180 6.2e-14 1
TAIR|locus:2028957 - symbol:RHD6 "AT1G66470" species:3702... 180 1.0e-13 1
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 181 1.5e-13 1
TAIR|locus:2156015 - symbol:RSL1 "AT5G37800" species:3702... 178 2.0e-13 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 175 2.1e-13 1
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 177 2.7e-13 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 176 3.5e-13 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 169 7.1e-13 2
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 166 1.7e-12 2
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 173 2.1e-12 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 153 4.5e-11 1
UNIPROTKB|Q9ASJ3 - symbol:P0439B06.24 "Putative uncharact... 164 9.9e-11 1
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 164 1.0e-10 1
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 162 2.0e-10 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 161 3.0e-10 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 160 3.3e-10 2
UNIPROTKB|Q651K2 - symbol:B1089G05.30 "BHLH protein-like"... 160 4.0e-10 1
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 161 4.8e-10 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 142 1.5e-08 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 152 1.7e-08 1
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 130 2.3e-08 1
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 145 1.2e-07 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 136 3.6e-07 1
TAIR|locus:2039445 - symbol:AMS "AT2G16910" species:3702 ... 139 7.7e-07 1
UNIPROTKB|Q75GI1 - symbol:OSJNBa0013A09.16 "Putative tran... 134 1.4e-06 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 125 1.8e-06 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 133 1.8e-06 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 130 1.9e-06 1
TAIR|locus:2141573 - symbol:FBH2 "AT4G09180" species:3702... 130 1.9e-06 1
TAIR|locus:2026037 - symbol:FBH3 "AT1G51140" species:3702... 133 2.0e-06 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 123 2.0e-06 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 131 2.1e-06 1
TAIR|locus:2044762 - symbol:AT2G34820 "AT2G34820" species... 130 2.6e-06 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 134 2.7e-06 1
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 130 3.6e-06 1
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 126 6.4e-06 1
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 130 6.5e-06 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 131 6.7e-06 1
UNIPROTKB|Q75KP4 - symbol:OSJNBa0065F09.5 "Expressed prot... 120 8.4e-06 2
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 128 9.4e-06 1
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 126 1.1e-05 1
TAIR|locus:2031978 - symbol:AT1G05710 species:3702 "Arabi... 116 1.2e-05 1
UNIPROTKB|Q2QLR0 - symbol:LOC_Os12g43620 "Helix-loop-heli... 125 1.4e-05 1
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 127 1.5e-05 1
TAIR|locus:2204569 - symbol:AT1G30670 "AT1G30670" species... 122 1.8e-05 1
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 122 2.3e-05 1
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 125 2.4e-05 1
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 124 2.6e-05 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 122 2.7e-05 1
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 123 2.9e-05 1
UNIPROTKB|Q7XT55 - symbol:OSJNBa0084K20.3 "OSJNBa0076N16.... 118 3.1e-05 1
TAIR|locus:2202867 - symbol:BPEp "AT1G59640" species:3702... 122 3.3e-05 1
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 119 4.1e-05 1
TAIR|locus:2118524 - symbol:TT8 "AT4G09820" species:3702 ... 121 5.1e-05 2
TAIR|locus:2137574 - symbol:AT4G37850 "AT4G37850" species... 120 5.3e-05 1
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 119 5.9e-05 1
TAIR|locus:2142419 - symbol:AT5G10570 "AT5G10570" species... 119 6.3e-05 1
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 120 6.4e-05 1
UNIPROTKB|Q7X7U7 - symbol:OSJNBb0091E11.4 "OJ990528_30.9 ... 108 6.5e-05 1
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 97 6.8e-05 2
TAIR|locus:2014144 - symbol:BEE1 "BR enhanced expression ... 117 7.1e-05 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 117 7.4e-05 1
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 121 7.7e-05 1
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 120 8.5e-05 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 119 8.6e-05 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 114 9.4e-05 2
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 119 9.8e-05 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 117 0.00011 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 118 0.00012 1
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 119 0.00013 1
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 116 0.00015 1
UNIPROTKB|Q75H21 - symbol:OSJNBa0027H16.21 "Putative unch... 117 0.00016 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 120 0.00016 2
UNIPROTKB|Q657Z3 - symbol:P0005A05.10 "Putative ethylene-... 117 0.00016 1
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 117 0.00019 1
UNIPROTKB|Q6Z861 - symbol:P0572D06.2 "cDNA clone:002-118-... 113 0.00020 1
TAIR|locus:2053766 - symbol:AT2G42300 "AT2G42300" species... 115 0.00020 1
TAIR|locus:2199307 - symbol:AT1G68240 species:3702 "Arabi... 109 0.00021 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 112 0.00029 1
TAIR|locus:2059979 - symbol:FBH4 "AT2G42280" species:3702... 114 0.00031 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 110 0.00031 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 119 0.00032 2
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 112 0.00033 1
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 115 0.00034 1
TAIR|locus:2045263 - symbol:AT2G31730 species:3702 "Arabi... 103 0.00034 1
WARNING: Descriptions of 13 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2074865 [details] [associations]
symbol:HEC2 "AT3G50330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] [GO:0080126 "ovary
septum development" evidence=IGI] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL132976
HOGENOM:HOG000242863 ProtClustDB:CLSN2684406 GO:GO:0048462
GO:GO:0010500 EMBL:BT010607 EMBL:AK175679 EMBL:AK175912
EMBL:AK176020 IPI:IPI00532987 PIR:T45579 RefSeq:NP_190602.1
UniGene:At.35505 ProteinModelPortal:Q9SND4 SMR:Q9SND4 IntAct:Q9SND4
EnsemblPlants:AT3G50330.1 GeneID:824195 KEGG:ath:AT3G50330
TAIR:At3g50330 eggNOG:NOG315110 InParanoid:Q9SND4 OMA:NANMAAM
PhylomeDB:Q9SND4 Genevestigator:Q9SND4 GO:GO:0080126 Uniprot:Q9SND4
Length = 231
Score = 437 (158.9 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 87/112 (77%), Positives = 95/112 (84%)
Query: 133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
+MAAMREMIFRIA MQPIHIDPES+KPPKR+NV+ISKDPQSVAARHRRE ISERIRILQR
Sbjct: 91 NMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQR 150
Query: 193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAG 244
+VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+ G G +AG
Sbjct: 151 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGALAG 202
Score = 73 (30.8 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 16 MDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNN 68
M+MM + QMEKLPE N+N +P PH I + SN T P + NP +
Sbjct: 8 MNMM--MQQMEKLPEHFS--NSNPNPNPHNIMMLS---ESN--THPFFFNPTH 51
>TAIR|locus:2155543 [details] [associations]
symbol:HEC1 "HECATE 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010500 "transmitting tissue
development" evidence=IGI] [GO:0048462 "carpel formation"
evidence=IMP] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:AF488618 EMBL:AK228927 IPI:IPI00530790
RefSeq:NP_201507.1 UniGene:At.28829 ProteinModelPortal:Q9FHA7
SMR:Q9FHA7 IntAct:Q9FHA7 EnsemblPlants:AT5G67060.1 GeneID:836841
KEGG:ath:AT5G67060 TAIR:At5g67060 eggNOG:NOG267961
HOGENOM:HOG000242863 InParanoid:Q9FHA7 OMA:FLFNSTH PhylomeDB:Q9FHA7
ProtClustDB:CLSN2684406 Genevestigator:Q9FHA7 GO:GO:0048462
GO:GO:0010500 Uniprot:Q9FHA7
Length = 241
Score = 434 (157.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 86/104 (82%), Positives = 93/104 (89%)
Query: 133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
+MAAMREMIFRIA MQPIHIDPE++KPPKRRNV+ISKDPQSVAARHRRE ISERIRILQR
Sbjct: 94 NMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQR 153
Query: 193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
+VPGGTKMDTASMLDEAIHYVKFLKKQV +LE+ GG G
Sbjct: 154 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQAVVTGGGGGG 197
Score = 65 (27.9 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 17 DMMAVIM-QMEKLPEFCEAFNNNISP 41
D+M ++M QMEKLPEFC ++ SP
Sbjct: 4 DIMNMMMHQMEKLPEFCNPNSSFFSP 29
>UNIPROTKB|Q6Z9R3 [details] [associations]
symbol:P0461F06.33 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000145
eggNOG:NOG315110 EMBL:AP004693 EnsemblPlants:LOC_Os08g36740.1
OMA:SAMREMI Uniprot:Q6Z9R3
Length = 246
Score = 414 (150.8 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 87/119 (73%), Positives = 97/119 (81%)
Query: 135 AAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIV 194
AAMREMIF IAA+QP++IDPE+++PPKRRNV+IS DPQSVAAR RRE ISERIRILQR+V
Sbjct: 125 AAMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLV 184
Query: 195 PGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA---HRPMGGVGFQGAPMAGVAYPSL 250
PGGTKMDTASMLDEAIHYVKFLK QV +LE+A A HRP A A VAYP L
Sbjct: 185 PGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAANGHRPPPPTATSAAA-ATVAYPGL 242
Score = 50 (22.7 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 1 MDVDMIKASQQAEDHMDMMAVIMQMEKLPEF 31
M+ DM+ ++ +A+ +++M ++Q+E+L F
Sbjct: 1 MEFDMLNSNPEAQ--LELMNTMLQLEQLSAF 29
>UNIPROTKB|Q67TR8 [details] [associations]
symbol:B1342C04.6 "Basic helix-loop-helix (BHLH)-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP005655 EMBL:AP006057
EMBL:AK060477 EMBL:AK070458 RefSeq:NP_001063357.1 UniGene:Os.51063
EnsemblPlants:LOC_Os09g28210.1 GeneID:4347252 KEGG:osa:4347252
OMA:AYPAFHA ProtClustDB:CLSN2697769 Uniprot:Q67TR8
Length = 236
Score = 415 (151.1 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 85/124 (68%), Positives = 98/124 (79%)
Query: 132 NSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
+S AMREMIF IAA+QP+ IDPE+++PPKRRNV+ISKDPQSVAAR RRE ISERIRILQ
Sbjct: 112 SSSEAMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAARLRRERISERIRILQ 171
Query: 192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLV 251
R+VPGGTKMDTASMLDEAIHYVKFLK QV +LE+A A G + A G AYP+ +
Sbjct: 172 RLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLERAAA--ATGAAAHRAAAF-GAAYPAAL 228
Query: 252 KASH 255
H
Sbjct: 229 PMQH 232
Score = 47 (21.6 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1 MDVDMIKASQQAEDHMDMMAVIMQMEKL 28
MD D+ + E +D+M+ ++Q+E+L
Sbjct: 1 MDFDLFNS--YPESQLDLMSTMLQLEQL 26
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 70/103 (67%), Positives = 83/103 (80%)
Query: 129 EKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIR 188
E + AM+EM+++IAAMQ + IDP ++K PKRRNV+IS DPQSVAARHRRE ISERIR
Sbjct: 87 EPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIR 146
Query: 189 ILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRP 231
ILQR+VPGGTKMDTASMLDEAI YVKFLK+Q+ L + P
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189
>TAIR|locus:2126856 [details] [associations]
symbol:IND "AT4G00120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010197 "polar nucleus fusion" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161471
GO:GO:0010197 EMBL:AF069299 EMBL:BT029443 EMBL:AF488578
IPI:IPI00532644 PIR:T01340 RefSeq:NP_191923.1 UniGene:At.34598
ProteinModelPortal:O81313 SMR:O81313 IntAct:O81313 STRING:O81313
PRIDE:O81313 EnsemblPlants:AT4G00120.1 GeneID:827911
KEGG:ath:AT4G00120 TAIR:At4g00120 eggNOG:NOG274244
HOGENOM:HOG000113070 InParanoid:O81313 OMA:DWNKAND PhylomeDB:O81313
ProtClustDB:CLSN2916160 Genevestigator:O81313 Uniprot:O81313
Length = 198
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 70/119 (58%), Positives = 83/119 (69%)
Query: 129 EKRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIR 188
E M AM+EM + IA MQP+ IDP ++ P RRNV+IS DPQ+V AR RRE ISE+IR
Sbjct: 80 EYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIR 139
Query: 189 ILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAY 247
IL+RIVPGG KMDTASMLDEAI Y KFLK+QV L+ H +G APMA +Y
Sbjct: 140 ILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQP---HSQIG------APMANPSY 189
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 64/120 (53%), Positives = 86/120 (71%)
Query: 133 SMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQR 192
++A M+EMI+R AA +P++ E ++ PKR+NVKIS DPQ+VAAR RRE ISE+IR+LQ
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300
Query: 193 IVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA-GVAYPSLV 251
+VPGGTKMDTASMLDEA +Y+KFL+ QV LE + F AP + + +PS +
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAPTSFPLFHPSFL 360
>UNIPROTKB|Q8S0N2 [details] [associations]
symbol:P0692C11.41-1 "BHLH transcription factor-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 EMBL:AP003381 EMBL:AP003273 EMBL:AK106119
RefSeq:NP_001044022.1 UniGene:Os.25546 GeneID:4327679
KEGG:osa:4327679 eggNOG:NOG254276 OMA:EPDMEAM
ProtClustDB:CLSN2919059 Uniprot:Q8S0N2
Length = 393
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/96 (60%), Positives = 77/96 (80%)
Query: 133 SMAAMREMIFRIAAMQPIHIDPESIKP-PKRRNVKISKDPQSVAARHRREMISERIRILQ 191
+MA ++EMI+R AAM+P+H+ E+ P+R+NV+IS DPQ+VAAR RRE +S+R+R+LQ
Sbjct: 246 AMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQ 305
Query: 192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227
++VPGG KMDTASMLDEA Y+KFLK QV LE G
Sbjct: 306 KLVPGGNKMDTASMLDEAASYLKFLKSQVQKLETLG 341
>UNIPROTKB|Q657D1 [details] [associations]
symbol:P0697C12.40 "BHLH transcription-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003141
EMBL:AP003296 Uniprot:Q657D1
Length = 484
Score = 290 (107.1 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 55/93 (59%), Positives = 76/93 (81%)
Query: 133 SMAAMREMIFRIAAMQPIHIDPESI-KPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
++A ++EMI+R AAM+P+ + E + P+RRNV+IS DPQ+VAAR RRE ISER+R+LQ
Sbjct: 335 ALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQ 394
Query: 192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
++VPGG KMDTASMLDEA +Y++FLK Q+ L+
Sbjct: 395 KLVPGGAKMDTASMLDEAANYLRFLKSQIRELQ 427
>UNIPROTKB|Q5TKP7 [details] [associations]
symbol:OJ1362_G11.11 "Putative uncharacterized protein
OJ1362_G11.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC104713 ProteinModelPortal:Q5TKP7
EnsemblPlants:LOC_Os05g46370.1 KEGG:dosa:Os05t0541400-00
Gramene:Q5TKP7 HOGENOM:HOG000238211 Uniprot:Q5TKP7
Length = 416
Score = 274 (101.5 bits), Expect = 9.0e-24, P = 9.0e-24
Identities = 57/107 (53%), Positives = 78/107 (72%)
Query: 133 SMAAMREMIFRIAAMQPIHI-------DPESIKPP-----KRRNVKISKDPQSVAARHRR 180
++A ++EM++R A M+P+ + DP S PP +R+NV+IS DPQ+VAAR RR
Sbjct: 257 AIAQVKEMVYRAAPMRPVTLGGPASASDPSSRPPPPPQRPRRKNVRISSDPQTVAARLRR 316
Query: 181 EMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227
E +SER+R+LQR+VPGG+KMDTA+MLDEA Y+KFLK Q+ LE G
Sbjct: 317 ERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALETLG 363
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 53/95 (55%), Positives = 68/95 (71%)
Query: 153 DPESIKP-PKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIH 211
+ E+ P P+RRN ++S +PQSVAAR RRE +S+R+R LQR+VPGG ++DTASML+EAI
Sbjct: 105 EEEAAAPRPRRRNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIR 164
Query: 212 YVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVA 246
YVKFLK V +LE+A A M G A AG A
Sbjct: 165 YVKFLKGHVQSLERAAAALHMHGGHAAAAGFAGDA 199
>UNIPROTKB|Q5MP56 [details] [associations]
symbol:BA1 "Uncharacterized protein" species:4577 "Zea
mays" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY683001 EMBL:AY683002
EMBL:BT062649 RefSeq:NP_001105271.1 UniGene:Zm.18382 IntAct:Q5MP56
GeneID:542186 KEGG:zma:542186 HOGENOM:HOG000238432 OMA:MLEQAIH
Uniprot:Q5MP56
Length = 219
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 46/86 (53%), Positives = 60/86 (69%)
Query: 161 KRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQV 220
+R K+S DPQSVAAR RR IS+R R+L+ +VPGG+KMDT SML++AIHYVKFLK Q+
Sbjct: 46 RRPGAKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKTQI 105
Query: 221 HTLEQAGAHRPMGGVGFQGAPMAGVA 246
+L QA + G + A + VA
Sbjct: 106 -SLHQAALMQHEEGCHAELAAYSAVA 130
>TAIR|locus:2179122 [details] [associations]
symbol:APTX "APRATAXIN-like" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0006790 "sulfur compound metabolic
process" evidence=IDA] [GO:0009150 "purine ribonucleotide metabolic
process" evidence=IDA] [GO:0047627 "adenylylsulfatase activity"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] InterPro:IPR011146
InterPro:IPR011598 InterPro:IPR015880 Pfam:PF00010 PROSITE:PS00028
PROSITE:PS50157 PROSITE:PS50888 PROSITE:PS51084 SMART:SM00353
SMART:SM00355 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 Gene3D:3.30.428.10 InterPro:IPR001310
SUPFAM:SSF54197 PROSITE:PS00892 InterPro:IPR019808 eggNOG:NOG278510
KO:K10863 PANTHER:PTHR12486 GO:GO:0006790 EMBL:AL161746
IPI:IPI00539681 PIR:T48153 RefSeq:NP_195751.1 UniGene:At.54671
ProteinModelPortal:Q9M041 SMR:Q9M041 PRIDE:Q9M041
EnsemblPlants:AT5G01310.1 GeneID:830940 KEGG:ath:AT5G01310
GeneFarm:3073 TAIR:At5g01310 HOGENOM:HOG000083464 InParanoid:Q9M041
OMA:GHEGNLQ PhylomeDB:Q9M041 ProtClustDB:CLSN2687115
BioCyc:ARA:AT5G01310-MONOMER Genevestigator:Q9M041 GO:GO:0047627
GO:GO:0009150 InterPro:IPR002589 Pfam:PF01661 PROSITE:PS51154
Uniprot:Q9M041
Length = 912
Score = 196 (74.1 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 40/59 (67%), Positives = 45/59 (76%)
Query: 162 RRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQV 220
R +S DPQSVAAR RR IS+R +ILQ +VPGG KMDT SMLDEAI YVKFLK Q+
Sbjct: 38 RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 36/56 (64%), Positives = 47/56 (83%)
Query: 168 SKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+KDPQS+AA++RRE ISER+RILQ +VP GTK+D +ML++AI YVKFL+ QV L
Sbjct: 204 TKDPQSLAAKNRRERISERLRILQELVPNGTKVDLVTMLEKAISYVKFLQLQVKVL 259
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 37/84 (44%), Positives = 57/84 (67%)
Query: 155 ESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVK 214
+S+K + N I+ DPQS+ AR RRE I++R++ LQ +VP GTK+D ++ML++A+HYVK
Sbjct: 126 KSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVK 185
Query: 215 FLKKQVHTL--EQAGAHRPMGGVG 236
FL+ Q+ L E + P+ G
Sbjct: 186 FLQLQIKLLSSEDLWMYAPLAHNG 209
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 156 SIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 215
S+K R + DPQS+ AR RRE I+ER++ LQ +VP GTK+D ++ML+EA+HYVKF
Sbjct: 162 SVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 221
Query: 216 LKKQVHTL 223
L+ Q+ L
Sbjct: 222 LQLQIKLL 229
>TAIR|locus:2028957 [details] [associations]
symbol:RHD6 "AT1G66470" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0048766 "root
hair initiation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048766 EMBL:AC074025
EMBL:AY128310 EMBL:BT006320 EMBL:AF488615 IPI:IPI00529158
PIR:C96690 RefSeq:NP_176820.1 UniGene:At.35765
ProteinModelPortal:Q9C707 SMR:Q9C707 IntAct:Q9C707
EnsemblPlants:AT1G66470.1 GeneID:842965 KEGG:ath:AT1G66470
TAIR:At1g66470 eggNOG:NOG301765 HOGENOM:HOG000006063
InParanoid:Q9C707 OMA:HESFPPP PhylomeDB:Q9C707
ProtClustDB:CLSN2681768 Genevestigator:Q9C707 Uniprot:Q9C707
Length = 298
Score = 180 (68.4 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 35/55 (63%), Positives = 46/55 (83%)
Query: 169 KDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
KDPQS+AA++RRE ISER++ILQ +VP GTK+D +ML++AI YVKFL+ QV L
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 257
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/54 (62%), Positives = 45/54 (83%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
DPQS+ AR RRE I+ER+RILQ +VP GTK+D ++ML+EA+HYVKFL+ Q+ L
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328
>TAIR|locus:2156015 [details] [associations]
symbol:RSL1 "AT5G37800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006063 ProtClustDB:CLSN2681768 EMBL:AB016873
IPI:IPI00523734 RefSeq:NP_198596.1 UniGene:At.55195
ProteinModelPortal:Q9FJ00 SMR:Q9FJ00 EnsemblPlants:AT5G37800.1
GeneID:833758 KEGG:ath:AT5G37800 TAIR:At5g37800 eggNOG:NOG303056
InParanoid:Q9FJ00 OMA:MDFNASS PhylomeDB:Q9FJ00
Genevestigator:Q9FJ00 Uniprot:Q9FJ00
Length = 307
Score = 178 (67.7 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 34/55 (61%), Positives = 46/55 (83%)
Query: 169 KDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
KDPQS+AA++RRE ISER+++LQ +VP GTK+D +ML++AI YVKFL+ QV L
Sbjct: 209 KDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVL 263
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 34/62 (54%), Positives = 49/62 (79%)
Query: 162 RRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVH 221
R + + SKD QS+ A+ RRE I+ER+RILQ++VP GTK+D ++ML+EA+ YVKFL+ Q+
Sbjct: 156 RGHKQCSKDTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIK 215
Query: 222 TL 223
L
Sbjct: 216 LL 217
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 177 (67.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 159 PPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKK 218
P +RR+ I+ QS+ AR RRE I+ R+RILQ++VP GTK+D ++ML+EA+HYVKFL+
Sbjct: 211 PARRRSATIA---QSLYARRRRERINGRLRILQKLVPNGTKVDISTMLEEAVHYVKFLQL 267
Query: 219 QVHTLEQAGAHRPM 232
Q+ Q H M
Sbjct: 268 QIKVEVQIVCHDQM 281
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 176 (67.0 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
DPQS+ AR RRE I+ER++ILQ +VP GTK+D ++ML+EA+HYVKFL+ Q+ L
Sbjct: 230 DPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLL 283
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 169 (64.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 39/83 (46%), Positives = 50/83 (60%)
Query: 154 PESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYV 213
P SI+P R + DP S+A R RRE I+ERIR LQ +VP K D A+M+DE + YV
Sbjct: 139 PTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYV 198
Query: 214 KFLKKQVHTLEQAGAHRPMGGVG 236
KFL+ QV L + +GG G
Sbjct: 199 KFLRLQVKVLSMSR----LGGAG 217
Score = 38 (18.4 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 93 PVQEPMTPPLHQPNNV 108
P+Q+P HQP ++
Sbjct: 127 PMQQPPPSAPHQPTSI 142
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 166 (63.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 37/73 (50%), Positives = 47/73 (64%)
Query: 154 PESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYV 213
P++ KP R + DP S+A R RRE I+ER++ LQ +VP G K D ASMLDE I YV
Sbjct: 124 PQT-KPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYV 182
Query: 214 KFLKKQVHTLEQA 226
KFL+ QV L +
Sbjct: 183 KFLQLQVKVLSMS 195
Score = 41 (19.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 47 HFSNANTNSNISTQPIYHN-PNN 68
H +A++ + I+ P+ HN PN+
Sbjct: 60 HHHDADSRNQITMIPLSHNHPND 82
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 173 (66.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 32/54 (59%), Positives = 44/54 (81%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
DPQS+ AR RRE I+ER++ LQ +VP GTK+D ++ML+EA+HYVKFL+ Q+ L
Sbjct: 225 DPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 278
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 168 SKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
++ QS A++RR+ I+ER+RILQ ++P GTK+D ++ML+EAI YVKFL Q+ L
Sbjct: 115 AESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHLQIKLL 170
>UNIPROTKB|Q9ASJ3 [details] [associations]
symbol:P0439B06.24 "Putative uncharacterized protein
P0439B06.24" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP002882 UniGene:Os.30617
ProteinModelPortal:Q9ASJ3 Gramene:Q9ASJ3 OMA:KAITYVK
ProtClustDB:CLSN2918925 Uniprot:Q9ASJ3
Length = 294
Score = 164 (62.8 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 32/55 (58%), Positives = 44/55 (80%)
Query: 169 KDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+ PQS AA+ RRE ISER+++LQ +VP GTK+D +ML++AI+YVKFL+ QV L
Sbjct: 206 EQPQSAAAKVRRERISERLKVLQDLVPNGTKVDLVTMLEKAINYVKFLQLQVKVL 260
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 164 (62.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 158 KPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK 217
KP R + DP S+A R RRE I+ER++ LQ +VP K D ASMLDE I YV+FL+
Sbjct: 96 KPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
Query: 218 KQVHTLEQAGAHRPMGGVGFQGAPMAGVA 246
QV L + +GG G G + G++
Sbjct: 156 LQVKVLSMSR----LGGAGSVGPRLNGLS 180
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 162 (62.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 145 AAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTAS 204
AA+ P P + +P R + DP S+A R RRE I+ER+R LQ +VP K D A+
Sbjct: 120 AAVGP---QPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTDRAA 176
Query: 205 MLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
MLDE + YVKFL+ QV L + +GG G
Sbjct: 177 MLDEILDYVKFLRLQVKVLSMSR----LGGAG 204
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 161 (61.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 38/88 (43%), Positives = 51/88 (57%)
Query: 149 PIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDE 208
P+ +I+P R + DP S+A R RRE I+ERIR LQ +VP K D A+M+DE
Sbjct: 132 PMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDE 191
Query: 209 AIHYVKFLKKQVHTLEQAGAHRPMGGVG 236
+ YVKFL+ QV L + +GG G
Sbjct: 192 IVDYVKFLRLQVKVLSMSR----LGGAG 215
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 160 (61.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 39/78 (50%), Positives = 46/78 (58%)
Query: 158 KPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK 217
KP R + DP S+A R RRE ISER++ LQ +VP K D ASMLDE I YVKFL+
Sbjct: 236 KPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQ 295
Query: 218 KQVHTLEQAGAHRPMGGV 235
QV L + P G V
Sbjct: 296 LQVKVLSMSRLGAP-GAV 312
Score = 36 (17.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 MEKLPEFCEAFNN 37
+ K P C AF N
Sbjct: 81 LPKAPTLCSAFQN 93
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 160 (61.4 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 168 SKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
+K+ QS AA+ RRE ISER+R LQ +VP G K+D +MLD AI YVKF++ Q+ LE
Sbjct: 196 NKETQSSAAKSRRERISERLRALQELVPSGGKVDMVTMLDRAISYVKFMQMQLRVLE 252
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 161 (61.7 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQA 226
DP S+A R RRE I+ER++ LQ +VP G K D ASMLDE I YVKFL+ QV L +
Sbjct: 147 DPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMS 203
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/107 (33%), Positives = 62/107 (57%)
Query: 161 KRRN-VKISKDPQ--SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK 217
K+RN +K + D Q +++ + RR I+E+++ LQ+++P K D ASMLDEAI Y+K L+
Sbjct: 84 KQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
Query: 218 KQVHTLEQAGAHRPMGGVGFQGAPMAGVAYPSLVKASHQMVDNINMQ 264
QV TL M G+G + V P+ + + + ++N++
Sbjct: 144 LQVQTLAV------MNGLGLNPMRLPQVPPPTHTRINETLEQDLNLE 184
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 34/69 (49%), Positives = 43/69 (62%)
Query: 158 KPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK 217
KP R + DP S+A R RRE IS+R++ LQ +VP K + ASMLDE I YVKFL+
Sbjct: 311 KPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASMLDEIIDYVKFLQ 370
Query: 218 KQVHTLEQA 226
QV L +
Sbjct: 371 LQVKVLSMS 379
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 171 PQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQAGAH 229
P+S+A R RR ISERIR LQ +VP K +TA MLD A+ Y+K L+KQV L + A+
Sbjct: 79 PRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRAN 138
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 159 PPKRRNVKISK----DPQSVAARHRREMISERIRILQRIVPGGTKM---DTASMLDEAIH 211
PP++R V+ + DP S+A R RRE I+ER++ LQ +VP K+ D ASMLDE I
Sbjct: 245 PPRQR-VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIID 303
Query: 212 YVKFLKKQV 220
YVKFL+ QV
Sbjct: 304 YVKFLQLQV 312
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 136 (52.9 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 153 DPESIKPPKRRNVKI------SKDPQSVAARHRREMISERIRILQRIVPGGTKM-DTASM 205
+P +PPK+ + + + D S+A R RRE ISER++ILQ +VPG K+ AS+
Sbjct: 122 NPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASV 181
Query: 206 LDEAIHYVKFLKKQVH----TLEQAGAH 229
LDE I+Y++ L++QV LE AH
Sbjct: 182 LDEIINYIQALQRQVEFLSMKLEAVNAH 209
>TAIR|locus:2039445 [details] [associations]
symbol:AMS "AT2G16910" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] [GO:0048658 "tapetal
layer development" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610
Pfam:PF14215 EMBL:AC005167 EMBL:AF488565 IPI:IPI00529182 PIR:G84545
RefSeq:NP_179283.2 UniGene:At.48482 UniGene:At.70395
ProteinModelPortal:Q9ZVX2 SMR:Q9ZVX2 STRING:Q9ZVX2 PRIDE:Q9ZVX2
EnsemblPlants:AT2G16910.1 GeneID:816194 KEGG:ath:AT2G16910
TAIR:At2g16910 eggNOG:NOG313389 HOGENOM:HOG000033929
InParanoid:Q9ZVX2 OMA:PRTKSCE PhylomeDB:Q9ZVX2
ProtClustDB:CLSN2690121 ArrayExpress:Q9ZVX2 Genevestigator:Q9ZVX2
GO:GO:0048658 Uniprot:Q9ZVX2
Length = 571
Score = 139 (54.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 36/108 (33%), Positives = 61/108 (56%)
Query: 152 IDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIH 211
ID E K+++ K S+ +A R RR+ +++R+ L+ +VP TK+D AS+L +AI+
Sbjct: 295 IDDEDDPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAIN 354
Query: 212 YVKFLKKQVHTLE---------QAGAHRPMGGVGFQGAPMAGVAYPSL 250
YVK L+ + L+ + G++RP GG+ G + G +P L
Sbjct: 355 YVKELQNEAKELQDELEENSETEDGSNRPQGGMSLNGTVVTGF-HPGL 401
>UNIPROTKB|Q75GI1 [details] [associations]
symbol:OSJNBa0013A09.16 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC145380
EMBL:AC135228 EMBL:AK120539 RefSeq:NP_001051131.1 UniGene:Os.7441
EnsemblPlants:LOC_Os03g51580.1 GeneID:4333965 KEGG:osa:4333965
OMA:DSCITEQ Uniprot:Q75GI1
Length = 359
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPM 232
+A R RRE +S+R L +IVPG KMD AS+L +AI YVK L+ QV LE+ RP+
Sbjct: 184 LAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRRPV 242
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 125 (49.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 179 RREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR-PMG 233
RR+ I+++++ LQ++VP +K D ASMLDE I Y+K L+ QV + + G+ PMG
Sbjct: 13 RRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQVMSRMGSMMMPMG 68
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 133 (51.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTLE-QAG 227
D S+A R RRE ISER+R LQ +VPG K+ A MLDE I+YV+ L+KQV L +
Sbjct: 173 DSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSMKIA 232
Query: 228 AHRPM 232
A P+
Sbjct: 233 ASNPV 237
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 130 (50.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 132 NSMAAMREMIFRIAAMQPIHIDP--ESIKPPKRRNVK-ISKDPQSVAARHRREMISERIR 188
+S +M I+ M +++D E P + R + + P+S+A R RR IS+RIR
Sbjct: 149 SSQLKEEQMSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIR 208
Query: 189 ILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQ 225
LQ +VP K +TA ML+EA+ YVK L+ Q+ L +
Sbjct: 209 RLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTE 246
>TAIR|locus:2141573 [details] [associations]
symbol:FBH2 "AT4G09180" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL161514 HOGENOM:HOG000095218 ProtClustDB:CLSN2679906
EMBL:AF488613 EMBL:BT010423 EMBL:AK230384 IPI:IPI00545642
PIR:B85093 RefSeq:NP_192657.1 UniGene:At.33710
ProteinModelPortal:Q9M0R0 SMR:Q9M0R0 PaxDb:Q9M0R0 PRIDE:Q9M0R0
EnsemblPlants:AT4G09180.1 GeneID:826499 KEGG:ath:AT4G09180
TAIR:At4g09180 eggNOG:NOG277140 InParanoid:Q9M0R0 OMA:MENLMED
PhylomeDB:Q9M0R0 Genevestigator:Q9M0R0 Uniprot:Q9M0R0
Length = 262
Score = 130 (50.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 171 PQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQ 225
P+S+A R RR IS+RIR LQ +VP K +TA ML+EA+ YVK L++Q+ L +
Sbjct: 194 PRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTE 249
>TAIR|locus:2026037 [details] [associations]
symbol:FBH3 "AT1G51140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0048573 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC079828 EMBL:AY034941 EMBL:AY063120
IPI:IPI00519239 PIR:H96548 RefSeq:NP_564583.1 UniGene:At.19155
ProteinModelPortal:Q9C690 SMR:Q9C690 PaxDb:Q9C690 PRIDE:Q9C690
EnsemblPlants:AT1G51140.1 GeneID:841537 KEGG:ath:AT1G51140
TAIR:At1g51140 eggNOG:NOG312535 HOGENOM:HOG000242890
InParanoid:Q9C690 OMA:TKDEDSA PhylomeDB:Q9C690
ProtClustDB:CLSN2917227 Genevestigator:Q9C690 Uniprot:Q9C690
Length = 379
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 171 PQSVAARHRREMISERIRILQRIVPG-GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228
P+S+A R RR ISER+R LQ +VP T+ +TA MLD A+ Y+K L++QV LE++ A
Sbjct: 314 PRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRA 372
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 123 (48.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 155 ESIKP-PKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYV 213
E+ +P P RR+ S + + + R RR+ I+E+++ LQ ++P TK D SMLDEAI Y+
Sbjct: 2 EARRPTPTRRSR--SAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYL 59
Query: 214 KFLKKQVHTLEQAGAHRPM 232
K L+ Q+ L P+
Sbjct: 60 KSLQLQLQMLVMGKGMAPV 78
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 155 ESIKP--PKRRNVKISK--DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAI 210
ES +P P R K S+ + +++ + RR I+E+++ LQ ++P +K D ASMLD+AI
Sbjct: 16 ESEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLDDAI 75
Query: 211 HYVKFLKKQVHTLEQA-GAHRPMGGVGFQGAP 241
Y+K L+ QV L G + P V GAP
Sbjct: 76 EYLKQLQLQVQMLSMRNGLYLPP--VNLSGAP 105
>TAIR|locus:2044762 [details] [associations]
symbol:AT2G34820 "AT2G34820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC004238 HOGENOM:HOG000090323 ProtClustDB:CLSN2914140
EMBL:AY234412 EMBL:AF488588 IPI:IPI00520911 PIR:T00464
RefSeq:NP_181028.2 UniGene:At.37756 ProteinModelPortal:Q84RD0
SMR:Q84RD0 STRING:Q84RD0 EnsemblPlants:AT2G34820.1 GeneID:818047
KEGG:ath:AT2G34820 TAIR:At2g34820 eggNOG:NOG260330
InParanoid:Q84RD0 OMA:EIFNETH PhylomeDB:Q84RD0
Genevestigator:Q84RD0 Uniprot:Q84RD0
Length = 291
Score = 130 (50.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 172 QSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
QS+AAR RR I+E+ L +++PGG K++TA M A YVKFL+ QV L+
Sbjct: 168 QSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGILQ 220
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 134 (52.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 168 SKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQA- 226
S + +++ R RR+ I+E++R LQ ++P K+D ASMLDEAI Y+K L+ QV + A
Sbjct: 344 SAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMAS 403
Query: 227 GAHRPMG-----GVGFQGAPMAGVA 246
G + P G+G A A +A
Sbjct: 404 GYYLPPAVMFPPGMGHYPAAAAAMA 428
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/101 (40%), Positives = 56/101 (55%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTLEQAGA 228
D S+A R RRE ISER++ LQ +VPG K+ A MLDE I+YV+ L++Q+ L A
Sbjct: 181 DSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLA 240
Query: 229 ---HRP---MGGVGFQ---GAPMAGVAYPSLVKA--SHQMV 258
RP M + + PM V P +V + SH+MV
Sbjct: 241 IVNPRPDFDMDDIFAKEVASTPMTVVPSPEMVLSGYSHEMV 281
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 158 KPPKRRNVKI------SKDPQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAI 210
+PPK+ + + + D S+A R RRE ISER++ILQ +VPG K+ AS+LDE I
Sbjct: 119 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEII 178
Query: 211 HYVKFLKKQV 220
+Y++ L+ QV
Sbjct: 179 NYIQSLQHQV 188
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 179 RREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQA 226
RRE I+ER++ LQ +VP K D ASMLDE I YVKFL+ QV L +
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 299
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 131 (51.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 153 DPESIKPPKRRNVKISKDPQ--SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAI 210
+P ++ R+ K S+ + +++ R RR+ I+E++R LQ ++P K+D ASMLDEAI
Sbjct: 296 EPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAI 355
Query: 211 HYVKFLKKQVHTL 223
Y+K L+ QV +
Sbjct: 356 EYLKTLQLQVQMM 368
>UNIPROTKB|Q75KP4 [details] [associations]
symbol:OSJNBa0065F09.5 "Expressed protein (With alternative
splicing)" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 EMBL:AC099323 EMBL:AK065674
RefSeq:NP_001050282.1 UniGene:Os.59384
EnsemblPlants:LOC_Os03g27390.1 EnsemblPlants:LOC_Os03g27390.2
GeneID:4333025 KEGG:osa:4333025 OMA:SARPDHS ProtClustDB:CLSN2693978
Uniprot:Q75KP4
Length = 315
Score = 120 (47.3 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 177 RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+ RRE I E + L++IVPGG D ++LDEAI Y+K+LK +V TL
Sbjct: 264 KRRRERIQETVAALRKIVPGGIAKDATAVLDEAICYLKYLKLKVKTL 310
Score = 42 (19.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 29 PEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNYV 70
P + E+ NN+ P P S NTNS P Y N + Y+
Sbjct: 14 PPWTESSANNLHP-PD---VSLDNTNS--VALPTYLNSDGYI 49
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 128 (50.1 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 156 SIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 215
S +P +R + + + +++ R RR+ I+E++R LQ +VP K D AS+LDEAI Y+K
Sbjct: 218 SKRPAAKRRTRAA-EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKS 276
Query: 216 LKKQVHTLEQAGAHRPM 232
L+ QV + PM
Sbjct: 277 LQMQVQIMWMTTGIVPM 293
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/91 (41%), Positives = 48/91 (52%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTLEQAGA 228
D S+A R RRE ISER+++LQ +VPG K+ A MLDE I YV+ L+ QV L A
Sbjct: 189 DSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLA 248
Query: 229 H-RPMGGVGFQGAPMAGVAYPSLVKASHQMV 258
P+ G M L K H+MV
Sbjct: 249 SLSPLMYEFGPGIDMHPDVLRQLAKMPHEMV 279
>TAIR|locus:2031978 [details] [associations]
symbol:AT1G05710 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009723 "response to
ethylene stimulus" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GO:GO:0003700 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240890 ProtClustDB:CLSN2687695 EMBL:AY072363
EMBL:BT006558 IPI:IPI00544028 RefSeq:NP_849597.1 UniGene:At.42378
UniGene:At.72027 ProteinModelPortal:Q8VY82 IntAct:Q8VY82
PRIDE:Q8VY82 EnsemblPlants:AT1G05710.2 GeneID:837078
KEGG:ath:AT1G05710 TAIR:At1g05710 InParanoid:Q8VY82 OMA:MENTVGV
PhylomeDB:Q8VY82 ArrayExpress:Q8VY82 Genevestigator:Q8VY82
Uniprot:Q8VY82
Length = 171
Score = 116 (45.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 164 NVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQV 220
++K K S +++ R++ + ERI LQ+IV K DTAS+L +A+HY++FL +QV
Sbjct: 24 SIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQV 80
>UNIPROTKB|Q2QLR0 [details] [associations]
symbol:LOC_Os12g43620 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011
KEGG:dosa:Os12t0632600-00 Gramene:Q2QLR0 OMA:TNVMPFP Uniprot:Q2QLR0
Length = 338
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQA-GAHRP 231
+A R RRE I++R L ++PG KMD A++L +A+ YVK L+++V TLE+ G RP
Sbjct: 170 IAERRRREKINQRFIELSTVIPGLKKMDKATILGDAVKYVKELQEKVKTLEEEDGGGRP 228
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPM 232
+++ R RR+ I+ER++ LQ ++P K D ASMLDEAI Y+K L+ Q+ + PM
Sbjct: 290 NLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPM 349
Query: 233 GGVGFQ 238
G Q
Sbjct: 350 MYPGMQ 355
>TAIR|locus:2204569 [details] [associations]
symbol:AT1G30670 "AT1G30670" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC007060 EMBL:AF488587 IPI:IPI00540602 PIR:B86432
RefSeq:NP_174355.1 UniGene:At.40503 ProteinModelPortal:Q9SA82
SMR:Q9SA82 PRIDE:Q9SA82 EnsemblPlants:AT1G30670.1 GeneID:839947
KEGG:ath:AT1G30670 TAIR:At1g30670 eggNOG:NOG324437
HOGENOM:HOG000090323 InParanoid:Q9SA82 OMA:RRITEKT PhylomeDB:Q9SA82
ProtClustDB:CLSN2914140 Genevestigator:Q9SA82 Uniprot:Q9SA82
Length = 264
Score = 122 (48.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 172 QSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
QS+AAR RR I+E+ + L +++PG K +TA M + A YVKFL+ Q+ L+
Sbjct: 139 QSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQAQIEILQ 191
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE ISER+R LQ +VPG K+ A MLDE I+YV+ L+ QV L
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFL 199
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 125 (49.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 152 IDP--ESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDE 208
IDP + I RR + D S+A R RRE ISER+++LQ +VPG K+ A MLDE
Sbjct: 249 IDPYKDYIHVRARRGQ--ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDE 306
Query: 209 AIHYVKFLKKQVHTL 223
I+YV+ L++QV L
Sbjct: 307 IINYVQSLQRQVEFL 321
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 157 IKPPKRR-NVKISK----DPQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAI 210
++PPK +V+ + D S+A R RRE IS+R+++LQ +VPG K+ A MLDE I
Sbjct: 195 VEPPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEII 254
Query: 211 HYVKFLKKQVHTL 223
+YV+ L++QV L
Sbjct: 255 NYVQSLQRQVEFL 267
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL--EQA-GAH 229
++A R RRE I+ER++ LQ+++P K SML++ I YVK L+ Q++ A G +
Sbjct: 156 NLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQINQFMPHMAMGMN 215
Query: 230 RPMGGVGFQG-APMAGV--AYP 248
+P + F A MAGV +YP
Sbjct: 216 QPPAYIPFPSQAHMAGVGPSYP 237
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RRE ISER+R+LQ +VPG K+ A MLDE I+YV+ L++QV L
Sbjct: 218 SLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFL 269
>UNIPROTKB|Q7XT55 [details] [associations]
symbol:OSJNBa0084K20.3 "OSJNBa0076N16.1 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000141 EMBL:AL606613 EMBL:AL731617 Uniprot:Q7XT55
Length = 218
Score = 118 (46.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 132 NSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
+ + A REM +Q H D + +R + P+S+A R RR ISE++R LQ
Sbjct: 108 SQLVAPREMAGVEKYLQMQH-DQVPFRVRAKRGC--ATHPRSIAERERRTRISEKLRKLQ 164
Query: 192 RIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQ 225
+VP K T+ MLD A+ ++K L+ Q+ TL++
Sbjct: 165 ALVPNMDKQTSTSDMLDLAVDHIKGLQSQLQTLKE 199
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 122 (48.0 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE ISER++ILQ +VPG K+ A +LDE I+Y++ L++QV L
Sbjct: 145 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 199
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTK-MDTASMLDEAIHYVKFLKKQVHTL 223
D S+A R RR I+ER++ LQ IVPG K M A+MLDE I+YV+ L+ QV L
Sbjct: 156 DSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFL 210
>TAIR|locus:2118524 [details] [associations]
symbol:TT8 "AT4G09820" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009962 "regulation of flavonoid
biosynthetic process" evidence=TAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:2000029 "regulation
of proanthocyanidin biosynthetic process" evidence=IEP] [GO:0010026
"trichome differentiation" evidence=IMP] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
InterPro:IPR025610 Pfam:PF14215 EMBL:AL161516 GO:GO:0009813
EMBL:AL049482 HOGENOM:HOG000237985 GO:GO:0010026 GO:GO:2000029
EMBL:AJ277509 EMBL:DQ446813 EMBL:DQ653187 IPI:IPI00530243
RefSeq:NP_192720.2 UniGene:At.10175 ProteinModelPortal:Q9FT81
SMR:Q9FT81 IntAct:Q9FT81 STRING:Q9FT81 PaxDb:Q9FT81 PRIDE:Q9FT81
EnsemblPlants:AT4G09820.1 GeneID:826571 KEGG:ath:AT4G09820
TAIR:At4g09820 eggNOG:NOG249918 InParanoid:Q9FT81 OMA:NEVDSKT
PhylomeDB:Q9FT81 ProtClustDB:CLSN2681600 Genevestigator:Q9FT81
Uniprot:Q9FT81
Length = 518
Score = 121 (47.7 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 132 NSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQ 191
+S +++MIFR+ + H + + + P+ +S VA R RRE ++E+ L+
Sbjct: 333 SSQWVLKQMIFRVPFL---HDNTKDKRLPRE---DLS---HVVAERRRREKLNEKFITLR 383
Query: 192 RIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
+VP TKMD S+L + I YV L+K+VH LE
Sbjct: 384 SMVPFVTKMDKVSILGDTIAYVNHLRKRVHELE 416
Score = 40 (19.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 6 IKASQQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNIST 59
I+++ + HMDMM + ME+ + + + P + + +T+S I +
Sbjct: 262 IESTHTLDTHMDMMNL---MEEGGNYSQTVTTLLMSHPTSLLSDSVSTSSYIQS 312
>TAIR|locus:2137574 [details] [associations]
symbol:AT4G37850 "AT4G37850" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL035709
EMBL:AL161592 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
ProtClustDB:CLSN2690865 EMBL:AF488567 IPI:IPI00544527 PIR:T06032
RefSeq:NP_195498.3 UniGene:At.31223 ProteinModelPortal:Q9T072
SMR:Q9T072 EnsemblPlants:AT4G37850.1 GeneID:829941
KEGG:ath:AT4G37850 TAIR:At4g37850 eggNOG:NOG262524
InParanoid:Q8S3F0 PhylomeDB:Q9T072 Genevestigator:Q9T072
Uniprot:Q9T072
Length = 328
Score = 120 (47.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 160 PKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQ 219
P RN ++D +A R RRE +++R L +VPG KMD AS+L +A+ ++K+L+++
Sbjct: 142 PFSRNQSNAQD-HIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQER 200
Query: 220 VHTLEQAGAHR 230
V LE+ R
Sbjct: 201 VGELEEQKKER 211
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 119 (46.9 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 154 PESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHY 212
P+ I RR + D S+A R RRE IS++++ LQ IVPG K+ A MLDE I+Y
Sbjct: 136 PDYIHVRARRGE--ATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINY 193
Query: 213 VKFLKKQVHTL 223
V+ L++QV L
Sbjct: 194 VQSLQQQVEFL 204
>TAIR|locus:2142419 [details] [associations]
symbol:AT5G10570 "AT5G10570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL353995 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488594 IPI:IPI00529696 PIR:T49982
RefSeq:NP_196619.1 UniGene:At.32362 ProteinModelPortal:Q9LXA9
SMR:Q9LXA9 EnsemblPlants:AT5G10570.1 GeneID:830922
KEGG:ath:AT5G10570 TAIR:At5g10570 eggNOG:NOG310833
HOGENOM:HOG000029066 InParanoid:Q9LXA9 OMA:SSAFDYP PhylomeDB:Q9LXA9
ProtClustDB:CLSN2914918 Genevestigator:Q9LXA9 Uniprot:Q9LXA9
Length = 315
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 161 KRRNVKISKDPQS--VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKK 218
KR N K+ P +A R RR+ +++R+ +L+ IVP TKMD S+L +AI Y+K L
Sbjct: 139 KRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLD 198
Query: 219 QVHTLEQ 225
+++ L++
Sbjct: 199 KINKLQE 205
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 120 (47.3 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RRE ISER+++LQ +VPG +K+ A MLDE I+YV+ L++QV L
Sbjct: 188 SLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFL 239
>UNIPROTKB|Q7X7U7 [details] [associations]
symbol:OSJNBb0091E11.4 "OJ990528_30.9 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008210
EMBL:CM000141 EMBL:AL606629 EMBL:AK059273 EMBL:AK101636
EMBL:AL662938 RefSeq:NP_001053182.1 UniGene:Os.55009
EnsemblPlants:LOC_Os04g41570.1 EnsemblPlants:LOC_Os04g41570.2
EnsemblPlants:LOC_Os04g41570.3 GeneID:4336261 KEGG:osa:4336261
eggNOG:NOG241248 OMA:SKGLCLV Uniprot:Q7X7U7
Length = 156
Score = 108 (43.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 156 SIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 215
S+ K RN P V+ + +++ I ER+ LQ++V K DTAS+L EA Y+KF
Sbjct: 34 SMTSKKPRNTSPRDAP--VSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKF 91
Query: 216 LKKQVHTLEQAGAHRP 231
L +Q+ L P
Sbjct: 92 LHQQLEVLSSPYMRAP 107
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 97 (39.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 175 AARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLE 224
A R RRE +++R L+ +VP +KMD AS+L +A+ Y+ L ++ +E
Sbjct: 437 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVME 486
Score = 68 (29.0 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 10 QQAEDHMDMMAVIMQMEKLPEFCEAFNNNISPLPHEIHFSNANTNSNISTQPIYHNPNNY 69
QQ + + V ++ P+ +A+ NN + FSN TN+N P + P NY
Sbjct: 291 QQHRQFREKLTVRKMDDRAPKRLDAYPNN----GNRFMFSNPGTNNNTLLSPTWVQPENY 346
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 117 (46.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTK-MDTASMLDEAIHYVKFLKKQVHTL 223
D S+A R RR I+ER+R LQ +VPG K M A+MLDE I+YV+ L+ QV L
Sbjct: 154 DSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFL 208
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 117 (46.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 157 IKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 216
+K RRN + + + + RR I+E+ ++LQR+VPG K +S LD IHY+K L
Sbjct: 143 VKHKARRNPGYA-ETHGLTEKRRRSRINEKFKMLQRLVPGCDKCSQSSTLDRTIHYMKSL 201
Query: 217 KKQVHTL 223
++Q+ +
Sbjct: 202 QQQLQAM 208
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 121 (47.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE IS+R+++LQ +VPG K+ A MLDE I+YV+ L++QV L
Sbjct: 286 DSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFL 340
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RRE ISER+++LQ +VPG +K+ A MLDE I+YV+ L++QV L
Sbjct: 260 SLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 311
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 119 (46.9 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE ISER+ +LQ +VPG ++ A MLDE I+YV+ L++QV L
Sbjct: 200 DSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFL 254
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 114 (45.2 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 154 PESIKPPKRRNVKIS---KDPQS--VAARHRREMISERIRILQRIVPGGTKMDTASMLDE 208
PE+ K P++R K + ++P + A R RRE +++R L+ +VP +KMD AS+L +
Sbjct: 502 PEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGD 561
Query: 209 AIHYVKFLKKQVHTLE 224
AI Y+ L+ ++ LE
Sbjct: 562 AISYINELRGKLTALE 577
Score = 49 (22.3 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 41 PLPHEI-HFSNANTNS-NISTQPIYHNP 66
P PH+I HF N +T++ + P H P
Sbjct: 299 PPPHQIQHFENGSTSTLTENPSPSVHAP 326
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 119 (46.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 177 RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225
R RR+ I++R++ LQ++VP +K D ASMLDE I Y+K L+ QV + +
Sbjct: 223 RKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMMSR 271
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+++ + RR I+E+++ LQ ++P K D ASMLDEAI Y+K L+ QV L
Sbjct: 109 NLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 159
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 159 PPKRRNVKISK--DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 216
P R + K + + +++ + RR I+E+++ LQ ++P K D ASMLDEAI Y+K L
Sbjct: 187 PSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQL 246
Query: 217 KKQVHTL 223
+ QV L
Sbjct: 247 QLQVQML 253
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 155 ESIKPPKRRNVKI------SKDPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLD 207
+S PPK + + + + S+A R RRE ISER++ LQ +VPG K+ A MLD
Sbjct: 291 QSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLD 350
Query: 208 EAIHYVKFLKKQVHTL 223
E I+YV+ L++QV L
Sbjct: 351 EIINYVQSLQRQVEFL 366
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 27/52 (51%), Positives = 39/52 (75%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RR+ ISER+++LQ +VPG +K+ A MLDE I+YV+ L++QV L
Sbjct: 159 SLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQSLQRQVEFL 210
>UNIPROTKB|Q75H21 [details] [associations]
symbol:OSJNBa0027H16.21 "Putative uncharacterized protein
OSJNBa0027H16.21" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238091 EMBL:AC137921
ProteinModelPortal:Q75H21 Gramene:Q75H21 Uniprot:Q75H21
Length = 384
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 169 KDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+ P++ ++E + + +R L+ I+PGG +MDT ++LDEA+ Y+K LK +V L
Sbjct: 202 RKPEAGGGERKKERMKKMMRTLKGIIPGGDRMDTPAVLDEAVRYLKSLKVEVKKL 256
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 120 (47.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE I ER+++LQ +VPG K+ A MLDE I+YV+ L++QV L
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFL 364
Score = 36 (17.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 49 SNANTNSNISTQPIYHNPNNYVXXXXXXXXXXXXXXXXFINTTTPVQEPMTPP 101
+N N + I P+ + + Y +N TTP+ E P
Sbjct: 103 NNNNNSGEIYGTPMSRSASCYATPMSSPPPPTNSNSQMMMNRTTPLTEFSADP 155
>UNIPROTKB|Q657Z3 [details] [associations]
symbol:P0005A05.10 "Putative ethylene-responsive protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000138 EMBL:AP002863
UniGene:Os.45859 KEGG:dosa:Os01t0105700-01 Uniprot:Q657Z3
Length = 387
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 130 KRNSMAAMREMIFRIAAMQPIHIDPESIKPPKRRNVKISKDPQSV--AARHRREMISERI 187
KRN+ AA + R + H ++ PP + ++ S+ + + R+E + +RI
Sbjct: 225 KRNTNAAAQGRGGRHGSSTE-HRSSTAL-PPSSKKPRLESHSSSMLPSFKVRKEKLGDRI 282
Query: 188 RILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
LQ++V K DTAS+L EAI Y+KFL+ QV TL
Sbjct: 283 AALQQLVSPFGKTDTASVLMEAIGYIKFLQDQVETL 318
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RRE ISER++ LQ +VPG +K+ A MLDE I+YV+ L++QV L
Sbjct: 272 SLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 323
>UNIPROTKB|Q6Z861 [details] [associations]
symbol:P0572D06.2 "cDNA clone:002-118-A09, full insert
sequence" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 SMART:SM00353
GO:GO:0005634 SUPFAM:SSF47459 EMBL:AP008208 EMBL:CM000139
ProtClustDB:CLSN2688090 EMBL:AP004798 EMBL:AK102703 EMBL:AK106848
EMBL:AK107002 RefSeq:NP_001046664.1 UniGene:Os.49098
EnsemblPlants:LOC_Os02g21090.1 EnsemblPlants:LOC_Os02g21090.2
EnsemblPlants:LOC_Os02g21090.3 GeneID:4329144 KEGG:osa:4329144
eggNOG:NOG323253 Uniprot:Q6Z861
Length = 254
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 179 RREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228
++E + + +R L+ I+PGG +MDT ++LDEA+ Y+K LK +V L G+
Sbjct: 203 KKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKLGVRGS 252
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE I+ R+++LQ +VPG K+ TA +LDE I++V+ L++QV L
Sbjct: 194 DNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEML 248
>TAIR|locus:2199307 [details] [associations]
symbol:AT1G68240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009686 "gibberellin biosynthetic process" evidence=RCA]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC016447
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AJ577585 EMBL:AY735551
EMBL:AY735552 EMBL:AY924719 IPI:IPI00528459 IPI:IPI00657054
IPI:IPI00919318 PIR:H96705 RefSeq:NP_001031251.1 RefSeq:NP_176991.2
UniGene:At.35550 ProteinModelPortal:Q5XVH0 SMR:Q5XVH0
EnsemblPlants:AT1G68240.1 GeneID:843153 KEGG:ath:AT1G68240
TAIR:At1g68240 eggNOG:NOG270610 HOGENOM:HOG000095221 OMA:EGTHEEE
PhylomeDB:Q5XVH0 ProtClustDB:CLSN2681409 Genevestigator:Q5XVH0
Uniprot:Q5XVH0
Length = 185
Score = 109 (43.4 bits), Expect = 0.00021, P = 0.00021
Identities = 32/97 (32%), Positives = 48/97 (49%)
Query: 153 DPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIH 211
D ES + KR+ S + + + + RR+ I +++ ILQ ++P TK D AS L+ I
Sbjct: 56 DEESYRMAKRQR---SMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIE 112
Query: 212 YVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMAGVAYP 248
Y+K LK QV + A P+ F A A P
Sbjct: 113 YIKSLKYQVDVMSMAYTTTPVYTPPFYAAAQAPCMSP 149
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 33/86 (38%), Positives = 44/86 (51%)
Query: 173 SVAARHRREMISERIRILQRIVPG-GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRP 231
++ + RR I+ER R LQR+VPG K + AS LD+ I Y+K L+ H LE A
Sbjct: 88 NLTEKRRRFKITERFRTLQRLVPGCDNKSNQASTLDQTIQYMKSLQ---HQLEATSA--- 141
Query: 232 MGGVGFQGAPMAGVAYPSLVKASHQM 257
G+P A V YP+ V M
Sbjct: 142 ------VGSPAAAVLYPAAVHPQSYM 161
>TAIR|locus:2059979 [details] [associations]
symbol:FBH4 "AT2G42280" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0046685
"response to arsenic-containing substance" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC002561 GO:GO:0048573
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG312535
HOGENOM:HOG000242890 EMBL:BT015339 EMBL:BT015712 EMBL:AK228981
IPI:IPI00530686 IPI:IPI00538142 PIR:T00937 RefSeq:NP_181757.2
RefSeq:NP_973670.1 UniGene:At.12448 UniGene:At.43726
ProteinModelPortal:Q66GR3 SMR:Q66GR3 PRIDE:Q66GR3
EnsemblPlants:AT2G42280.1 GeneID:818829 KEGG:ath:AT2G42280
TAIR:At2g42280 InParanoid:Q66GR3 OMA:NDNRANC PhylomeDB:Q66GR3
ProtClustDB:CLSN2681218 Genevestigator:Q66GR3 Uniprot:Q66GR3
Length = 359
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 171 PQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQAGAH 229
P+S+A R RR ISER+R LQ +VP K +T+ MLD A+ Y+K L++Q L A+
Sbjct: 289 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRAN 348
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTK-MDTASMLDEAIHYVKFLKKQVHTL 223
D S+A R RRE I+ER++ LQ +VPG K M A MLD I YV+ L+ Q+ L
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFL 167
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 119 (46.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTL 223
S+A R RRE I+ER+++LQ +VPG K+ A MLDE I+YV+ L++QV L
Sbjct: 640 SLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINYVQSLQRQVEFL 691
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 90 TTTPVQEPMTPPLHQP 105
T +P+ P PP QP
Sbjct: 86 TLSPLPSPSPPPQPQP 101
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 112 (44.5 bits), Expect = 0.00033, P = 0.00033
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKM-DTASMLDEAIHYVKFLKKQVHTLEQAGA 228
D S+A R RRE ISE++ LQ I+PG K+ A +LDE I+Y++ L++QV L
Sbjct: 162 DRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMK-- 219
Query: 229 HRPMGGVGFQGAPMAGVAYPS 249
+ G P GV +PS
Sbjct: 220 -LEVVNSGASTGPTIGV-FPS 238
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL--------E 224
+++ R RR+ I+ER++ LQ ++P ++ D AS+LDEAI Y+K L+ Q+ +
Sbjct: 262 NLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGSGMAAA 321
Query: 225 QAGAHRPMGGVGFQGAPMAG-VAYPSLVKASHQMVDN 260
A A PM G Q +P +A S ++ S V N
Sbjct: 322 AAAAASPMMFPGVQSSPYINQMAMQSQMQLSQFPVMN 358
>TAIR|locus:2045263 [details] [associations]
symbol:AT2G31730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009723 "response to
ethylene stimulus" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 EMBL:CP002685 GO:GO:0003700
GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240890 OMA:SKGLCLV EMBL:AJ576041 IPI:IPI00539360
RefSeq:NP_180732.3 UniGene:At.38180 ProteinModelPortal:Q7XJU1
SMR:Q7XJU1 DNASU:817730 EnsemblPlants:AT2G31730.1 GeneID:817730
KEGG:ath:AT2G31730 TAIR:At2g31730 InParanoid:Q7XJU1
PhylomeDB:Q7XJU1 ProtClustDB:CLSN2687695 Genevestigator:Q7XJU1
Uniprot:Q7XJU1
Length = 153
Score = 103 (41.3 bits), Expect = 0.00034, P = 0.00034
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
S +++ R++ ++ERI LQ++V K DTAS+L E + Y++FL++QV L
Sbjct: 35 SFSSKERKDKLAERISALQQLVSPYGKTDTASVLLEGMQYIQFLQEQVKVL 85
>TAIR|locus:2141216 [details] [associations]
symbol:B70 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR011598 PROSITE:PS50805 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:EF637083 EMBL:AL031187 EMBL:EF182720
EMBL:AY065362 EMBL:AY122937 IPI:IPI00529333 PIR:T05176
RefSeq:NP_193865.2 UniGene:At.28517 ProteinModelPortal:Q8VZ22
SMR:Q8VZ22 EnsemblPlants:AT4G21340.1 GeneID:827884
KEGG:ath:AT4G21340 TAIR:At4g21340 eggNOG:NOG319921
HOGENOM:HOG000095220 OMA:NESRMIS PhylomeDB:Q8VZ22
ProtClustDB:CLSN2690318 Genevestigator:Q8VZ22 Uniprot:Q8VZ22
Length = 301
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 153 DPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHY 212
D ES +P KR ++ S R +E + +RI LQ++V K DTAS+L +AI Y
Sbjct: 168 DIESSQPLKRPRLETPSHFPSFKVR--KEKLGDRITALQQLVSPFGKTDTASVLHDAIDY 225
Query: 213 VKFLKKQVHTLEQAGAHRPMGGVGFQ 238
+KFL++Q+ H G G Q
Sbjct: 226 IKFLQEQITEKVSTSPHLNSIGSGEQ 251
>UNIPROTKB|Q84R60 [details] [associations]
symbol:OSJNBb0113I20.8 "Putative ammonium transporter"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P22415 EMBL:AC116369 ProteinModelPortal:Q84R60 Gramene:Q84R60
Uniprot:Q84R60
Length = 353
Score = 113 (44.8 bits), Expect = 0.00039, P = 0.00039
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMG 233
+A R RRE I++R L ++PG KMD A++L +A+ YVK +++++ LEQ H+ G
Sbjct: 195 IAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEKLSELEQ---HQN-G 250
Query: 234 GV 235
GV
Sbjct: 251 GV 252
>TAIR|locus:2090679 [details] [associations]
symbol:AT3G19500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB025624 EMBL:AY084520 EMBL:AF488631 IPI:IPI00518921
RefSeq:NP_566639.1 UniGene:At.38400 ProteinModelPortal:Q9LT67
SMR:Q9LT67 EnsemblPlants:AT3G19500.1 GeneID:821484
KEGG:ath:AT3G19500 TAIR:At3g19500 eggNOG:NOG294378
HOGENOM:HOG000240890 OMA:HVENSNG PhylomeDB:Q9LT67
ProtClustDB:CLSN2688564 Genevestigator:Q9LT67 Uniprot:Q9LT67
Length = 270
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 158 KPPKRRNVKISKDPQSVA-ARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 216
KP K+ K +++ SV A+ R+E + ERI LQ++V K D AS+L EA+ Y+KFL
Sbjct: 136 KPGKKG--KRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFL 193
Query: 217 KKQVHTL 223
+ Q+ L
Sbjct: 194 QDQIQVL 200
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 173 SVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
+++ R RR+ I+ER++ LQ ++P +K D AS+LDEAI Y+K L+ Q+ +
Sbjct: 263 NLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 170 DPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQA-GA 228
D +++ R RRE I+ER++ LQ ++P K D SML++ I YVK L+ Q+ + G
Sbjct: 360 DMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQMMSMGHGM 419
Query: 229 HRPM 232
PM
Sbjct: 420 MPPM 423
>TAIR|locus:2062225 [details] [associations]
symbol:AT2G22750 "AT2G22750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF488562 EMBL:DQ446549
EMBL:DQ653015 IPI:IPI00538506 IPI:IPI00846694 PIR:D84616
RefSeq:NP_001077944.1 RefSeq:NP_179860.2 UniGene:At.39395
ProteinModelPortal:Q1PF17 SMR:Q1PF17 EnsemblPlants:AT2G22750.2
GeneID:816805 KEGG:ath:AT2G22750 TAIR:At2g22750 eggNOG:NOG266714
HOGENOM:HOG000240300 InParanoid:Q8S3F3 OMA:FDISIIA PhylomeDB:Q1PF17
ProtClustDB:CLSN2690865 Genevestigator:Q1PF17 Uniprot:Q1PF17
Length = 305
Score = 111 (44.1 bits), Expect = 0.00051, P = 0.00051
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 174 VAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMG 233
+A R RRE +++R L ++PG KMD AS+L +AI ++K+L++ V E+ + M
Sbjct: 129 LAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTME 188
Query: 234 GV 235
V
Sbjct: 189 SV 190
>UNIPROTKB|Q94HA7 [details] [associations]
symbol:OSJNBb0048A17.16 "Os03g0759700 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 eggNOG:NOG294378
EMBL:AC084282 EMBL:AK072833 RefSeq:NP_001051340.1 UniGene:Os.51847
EnsemblPlants:LOC_Os03g55220.1 EnsemblPlants:LOC_Os03g55220.2
GeneID:4334181 KEGG:osa:4334181 OMA:PTTECSS ProtClustDB:CLSN2694316
Uniprot:Q94HA7
Length = 317
Score = 111 (44.1 bits), Expect = 0.00055, P = 0.00055
Identities = 33/78 (42%), Positives = 41/78 (52%)
Query: 177 RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR--PMGG 234
R RRE + ERI LQ++V K DTAS+L EA+ Y++FL QV L R P
Sbjct: 159 RVRRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSAR 218
Query: 235 VGFQ--GAPMAGVAYPSL 250
V Q G P A P+L
Sbjct: 219 VPEQERGTPAAEEQPPAL 236
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 112 (44.5 bits), Expect = 0.00075, P = 0.00075
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 143 RIAAMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDT 202
++ A + H E+ R+ + + + ++A R RRE I+E+++ LQ+++P K
Sbjct: 232 KLKAREETHGTEEARGSTSRKRSRTA-EMHNLAERRRREKINEKMKTLQQLIPRCNKSTK 290
Query: 203 ASMLDEAIHYVKFLKKQV 220
S LD+AI YVK L+ Q+
Sbjct: 291 VSTLDDAIEYVKSLQSQI 308
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 111 (44.1 bits), Expect = 0.00079, P = 0.00078
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 178 HRREM-ISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228
HRR I+ER R LQR+VPG K + AS LD+ I Y+K L+ Q+ + G+
Sbjct: 224 HRRRFKITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQHQLKAMSVVGS 275
>TAIR|locus:2115683 [details] [associations]
symbol:AT4G05170 "AT4G05170" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AL161503 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000095220 EMBL:BT015446 IPI:IPI00532427 IPI:IPI01019413
PIR:A85065 RefSeq:NP_192426.2 UniGene:At.51015
ProteinModelPortal:Q9M0X8 SMR:Q9M0X8 DNASU:825865 GeneID:825865
KEGG:ath:AT4G05170 TAIR:At4g05170 eggNOG:NOG256664 PhylomeDB:Q9M0X8
ArrayExpress:Q9M0X8 Genevestigator:Q9M0X8 Uniprot:Q9M0X8
Length = 298
Score = 109 (43.4 bits), Expect = 0.00084, P = 0.00084
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 179 RREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
R+E + +RI LQ++V K DTAS+L+EA+ Y+KFL++QV L
Sbjct: 175 RKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVL 219
>TAIR|locus:2178555 [details] [associations]
symbol:MYC3 "AT5G46760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006952 "defense response"
evidence=IMP] [GO:0043425 "bHLH transcription factor binding"
evidence=IPI] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045893 GO:GO:0006952 GO:GO:0009753 GO:GO:0003677
GO:GO:0009718 GO:GO:0003700 GO:GO:0006351 EMBL:AB016882
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238207
InterPro:IPR025610 Pfam:PF14215 EMBL:AF251690 IPI:IPI00533290
RefSeq:NP_199488.1 UniGene:At.28315 ProteinModelPortal:Q9FIP9
SMR:Q9FIP9 DIP:DIP-58585N PaxDb:Q9FIP9 PRIDE:Q9FIP9
EnsemblPlants:AT5G46760.1 GeneID:834719 KEGG:ath:AT5G46760
TAIR:At5g46760 eggNOG:NOG295658 InParanoid:Q9FIP9 OMA:TASSIEM
PhylomeDB:Q9FIP9 ProtClustDB:CLSN2686023 Genevestigator:Q9FIP9
Uniprot:Q9FIP9
Length = 592
Score = 112 (44.5 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 148 QPIHIDPESIKPPKRRNVKIS--KDPQS--VAARHRREMISERIRILQRIVPGGTKMDTA 203
+ I ++P KP KR + ++P + A R RRE +++R L+ +VP +KMD A
Sbjct: 388 EAIVVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKA 447
Query: 204 SMLDEAIHYVKFLKKQVHTLE 224
S+L +AI Y+ LK ++ E
Sbjct: 448 SLLGDAISYINELKSKLQQAE 468
Score = 40 (19.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 89 NTTTPVQEPMTPPLHQPNNVVTGG 112
NT T QE + + N++++GG
Sbjct: 109 NTNTAEQEHRKRVIRELNSLISGG 132
>TAIR|locus:2052372 [details] [associations]
symbol:PAR1 "PHY RAPIDLY REGULATED 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0009641 "shade avoidance" evidence=IEP;IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0003712 "transcription
cofactor activity" evidence=IMP] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IMP] GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003712
EMBL:AC006931 GO:GO:0009641 GO:GO:0032502 HOGENOM:HOG000153160
ProtClustDB:CLSN2684867 EMBL:AY084291 EMBL:BT004925 EMBL:AK118184
EMBL:BN000864 IPI:IPI00545101 PIR:C84859 RefSeq:NP_565988.1
UniGene:At.43188 ProteinModelPortal:Q9SJH0 IntAct:Q9SJH0
STRING:Q9SJH0 EnsemblPlants:AT2G42870.1 GeneID:818887
KEGG:ath:AT2G42870 TAIR:At2g42870 eggNOG:NOG294535
InParanoid:Q9SJH0 OMA:GFERRTK PhylomeDB:Q9SJH0 ArrayExpress:Q9SJH0
Genevestigator:Q9SJH0 Uniprot:Q9SJH0
Length = 118
Score = 89 (36.4 bits), Expect = 0.00096, P = 0.00096
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 164 NVKISKDPQSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTL 223
N + +D + A + + E+I LQRI+PGG + ++ +E Y+ L+ Q+ T+
Sbjct: 42 NASVREDREE--AEEEEDEVKEKIEALQRIIPGGAALGVDALFEETAGYILSLQCQIKTI 99
Query: 224 E 224
+
Sbjct: 100 K 100
>UNIPROTKB|Q8LSP3 [details] [associations]
symbol:OJ1203D03.3 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000009 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC099732
EnsemblPlants:LOC_Os03g12760.1 KEGG:dosa:Os03t0229100-00
HOGENOM:HOG000239880 OMA:DSCLNIT Uniprot:Q8LSP3
Length = 451
Score = 111 (44.1 bits), Expect = 0.0010, P = 0.0010
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 158 KPPKRRNVKISKDPQSVAA-RHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 216
+PP+RR+ + + V A R RRE + ++ L IVPG K D S+L I YVK L
Sbjct: 273 QPPERRSRPPANAQEHVIAERKRREKLQQQFVALATIVPGLKKTDKISLLGSTIDYVKQL 332
Query: 217 KKQVHTLEQAGAHR 230
+++V LE+ G+ R
Sbjct: 333 EEKVKALEE-GSRR 345
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 267 238 0.00091 113 3 11 22 0.40 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 113
No. of states in DFA: 572 (61 KB)
Total size of DFA: 163 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.18u 0.11s 22.29t Elapsed: 00:00:02
Total cpu time: 22.19u 0.11s 22.30t Elapsed: 00:00:02
Start: Tue May 21 04:32:26 2013 End: Tue May 21 04:32:28 2013
WARNINGS ISSUED: 1