Query 043072
Match_columns 267
No_of_seqs 165 out of 919
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 12:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.4 5.4E-13 1.2E-17 93.2 6.2 49 173-221 1-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.4 4.5E-13 9.8E-18 95.0 5.8 52 170-221 6-60 (60)
3 PF00010 HLH: Helix-loop-helix 99.3 1.5E-12 3.2E-17 92.4 5.4 47 171-217 4-55 (55)
4 KOG1319 bHLHZip transcription 99.3 3.7E-13 8E-18 119.6 -1.8 92 171-265 65-163 (229)
5 KOG1318 Helix loop helix trans 99.0 5.8E-10 1.2E-14 108.6 5.6 55 167-221 232-290 (411)
6 KOG4304 Transcriptional repres 98.6 1.8E-08 3.9E-13 92.7 3.4 52 171-222 35-94 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.3 5.7E-07 1.2E-11 94.0 5.6 51 169-219 21-75 (803)
8 KOG2483 Upstream transcription 98.0 1.6E-05 3.5E-10 72.8 7.1 54 168-221 59-115 (232)
9 KOG0561 bHLH transcription fac 97.9 7.6E-06 1.6E-10 77.8 2.5 51 172-222 64-116 (373)
10 KOG2588 Predicted DNA-binding 97.8 8.3E-06 1.8E-10 86.2 2.4 62 169-230 277-339 (953)
11 KOG3960 Myogenic helix-loop-he 97.8 5.4E-05 1.2E-09 70.4 7.4 77 154-230 103-182 (284)
12 PLN03217 transcription factor 97.3 0.00051 1.1E-08 54.8 5.7 52 177-228 16-73 (93)
13 KOG4029 Transcription factor H 97.2 0.00032 6.9E-09 63.1 4.2 57 171-227 112-172 (228)
14 KOG3910 Helix loop helix trans 95.6 0.0067 1.5E-07 61.4 2.2 52 171-222 529-584 (632)
15 KOG3558 Hypoxia-inducible fact 92.3 0.075 1.6E-06 55.7 2.0 44 171-214 49-96 (768)
16 KOG4447 Transcription factor T 91.7 0.1 2.2E-06 46.0 1.8 49 172-220 82-132 (173)
17 KOG3560 Aryl-hydrocarbon recep 89.2 0.28 6E-06 50.7 2.7 39 176-214 33-75 (712)
18 KOG3559 Transcriptional regula 85.9 0.8 1.7E-05 46.1 3.6 42 174-215 7-52 (598)
19 KOG3898 Transcription factor N 73.7 2.1 4.5E-05 39.8 1.9 48 172-219 76-126 (254)
20 KOG4395 Transcription factor A 63.4 11 0.00024 35.8 4.4 50 172-221 178-230 (285)
21 KOG4447 Transcription factor T 56.0 6.4 0.00014 34.9 1.4 23 175-197 29-51 (173)
22 PF15290 Syntaphilin: Golgi-lo 44.1 3.1E+02 0.0068 26.7 11.7 24 119-142 54-82 (305)
23 KOG2391 Vacuolar sorting prote 30.1 4.7E+02 0.01 26.1 9.7 36 178-215 239-274 (365)
24 KOG3584 cAMP response element 29.0 34 0.00074 33.3 1.8 20 210-229 311-330 (348)
25 PF09849 DUF2076: Uncharacteri 28.3 2.1E+02 0.0046 26.8 6.8 23 202-227 49-71 (247)
26 COG3074 Uncharacterized protei 27.5 85 0.0018 24.7 3.4 28 206-233 13-40 (79)
27 PRK13702 replication protein; 26.9 1.6E+02 0.0035 23.7 5.0 42 170-211 22-76 (85)
28 KOG3582 Mlx interactors and re 25.7 15 0.00032 39.4 -1.3 51 171-221 654-709 (856)
29 PF02344 Myc-LZ: Myc leucine z 24.4 81 0.0018 21.1 2.4 16 177-192 14-29 (32)
30 PRK15422 septal ring assembly 24.2 99 0.0021 24.5 3.3 25 206-230 13-37 (79)
31 PF06005 DUF904: Protein of un 23.9 1E+02 0.0023 23.6 3.3 23 206-228 13-35 (72)
32 PF14689 SPOB_a: Sensor_kinase 23.7 2.2E+02 0.0048 20.6 4.9 39 180-225 20-58 (62)
33 TIGR00986 3a0801s05tom22 mitoc 22.2 55 0.0012 28.6 1.7 20 180-199 48-67 (145)
34 PF08781 DP: Transcription fac 21.8 1.9E+02 0.004 25.2 4.8 50 175-238 8-58 (142)
35 smart00338 BRLZ basic region l 20.5 94 0.002 22.4 2.4 19 210-228 25-43 (65)
36 PF04380 BMFP: Membrane fusoge 20.1 1.2E+02 0.0026 23.3 3.0 51 173-225 27-78 (79)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.40 E-value=5.4e-13 Score=93.17 Aligned_cols=49 Identities=31% Similarity=0.538 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072 173 SVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 173 s~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
+..||+||++||++|..|+++||. +.|+||++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6789999999999999999999986
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=4.5e-13 Score=94.99 Aligned_cols=52 Identities=27% Similarity=0.526 Sum_probs=48.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 043072 170 DPQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 170 ~~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
..|+..||+||++||+.|..|+++||.. .|+||++||+.||+||+.|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999999999999999987 899999999999999999998863
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.34 E-value=1.5e-12 Score=92.36 Aligned_cols=47 Identities=32% Similarity=0.554 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG-----TKMDTASMLDEAIHYVKFLK 217 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~-----~K~DKaSIL~eAIdYIK~Lq 217 (267)
.|+..||+||++||+.|..|+.+||.+ .|+||++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 489999999999999999999999976 68999999999999999997
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.26 E-value=3.7e-13 Score=119.60 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=82.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCCCCCC
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG-------TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQGAPMA 243 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~-------~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~~~~~~~~p~~~~~ 243 (267)
.|..+||+||+.||..+.-|+.|||.| .|+.||.||..+||||.+|+.+..+-|.+.+.....+.++. |.
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~---iI 141 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK---II 141 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 499999999999999999999999954 47889999999999999999999999999999999988888 88
Q ss_pred CCCcchHHHhhccCCCcccccc
Q 043072 244 GVAYPSLVKASHQMVDNINMQM 265 (267)
Q Consensus 244 ~~~y~~~~k~~~~~~g~~~~~~ 265 (267)
..+|++|++.+|--+|.-+.|+
T Consensus 142 k~~YEqM~~~~qdnp~~~e~~~ 163 (229)
T KOG1319|consen 142 KVNYEQMVKAHQDNPHEGEDQV 163 (229)
T ss_pred HHHHHHHHHhcccCCCcchhhh
Confidence 8999999999995555446554
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.97 E-value=5.8e-10 Score=108.65 Aligned_cols=55 Identities=25% Similarity=0.519 Sum_probs=49.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHH
Q 043072 167 ISKDPQSVAARHRREMISERIRILQRIVPGGT----KMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 167 ~sk~~hs~aER~RRerIner~~~LrsLVP~~~----K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
+.|+.|+.+|||||++||++|.+|..|||.|. |..|..||..++|||+.|++..+
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999983 45699999999999999988655
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.63 E-value=1.8e-08 Score=92.69 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG--------TKMDTASMLDEAIHYVKFLKKQVHT 222 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~--------~K~DKaSIL~eAIdYIK~Lq~qVq~ 222 (267)
.+-+.|||||+|||+.+.+|++||+.+ .|++||.||+-||+|++.|+...+.
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 477899999999999999999999932 6788999999999999999986543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.33 E-value=5.7e-07 Score=93.98 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=47.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKKQ 219 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~q 219 (267)
++.|+.+|||||+++|.-|.+|.+|||.+ .|+||..||..||+.||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 46799999999999999999999999986 5999999999999999999875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.99 E-value=1.6e-05 Score=72.80 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHH
Q 043072 168 SKDPQSVAARHRREMISERIRILQRIVPGG--TKMD-TASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 168 sk~~hs~aER~RRerIner~~~LrsLVP~~--~K~D-KaSIL~eAIdYIK~Lq~qVq 221 (267)
++..|+.-||+||+.|+++|..|+.+||.+ .+.. .++||+.|++||+.|+.+..
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 345699999999999999999999999975 3333 69999999999999987654
No 9
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.85 E-value=7.6e-06 Score=77.81 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHH
Q 043072 172 QSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHT 222 (267)
Q Consensus 172 hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq~ 222 (267)
-+..||+|-.-||-.|..||+|+|. |.|+.||.||..+.+||.+|+.+.-+
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 4567999999999999999999995 79999999999999999999876443
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.82 E-value=8.3e-06 Score=86.24 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=56.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR 230 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~ 230 (267)
|..|+++|||-|--||++|.+|+.+||+. .|+.|..+|..||+||++|+...+++...++..
T Consensus 277 RtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 277 RTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred cchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 56799999999999999999999999996 799999999999999999999888777665543
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.82 E-value=5.4e-05 Score=70.43 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCccCC-CCcccHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 043072 154 PESIKPPKRRNVKIS-KDPQSVAARHRREMISERIRILQR-IVPG-GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHR 230 (267)
Q Consensus 154 ~eS~k~~~rr~~~~s-k~~hs~aER~RRerIner~~~Lrs-LVP~-~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~ 230 (267)
.+..|..||+....- +..-.+.||+|-+|+||.|.+|++ -+++ ..++-|+.||..||+||..||.-++++.++....
T Consensus 103 ~wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 103 LWACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 444555555443211 112468899999999999999987 3444 4678999999999999999999999888766543
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.33 E-value=0.00051 Score=54.81 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhccCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072 177 RHRREMISERIRILQRIVPG------GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 177 R~RRerIner~~~LrsLVP~------~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~ 228 (267)
|---+.|++-+..|+.|+|. ..|...+-||.||..||+.|+.+|..|-+.-+
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468899999999999994 24556667999999999999999999876543
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.24 E-value=0.00032 Score=63.06 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072 171 PQSVAARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~ 227 (267)
.++..||.|=+-+|..|..||.+||. ..|+.|+.+|..||.||++|+.-++.-+...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 35777999999999999999999994 5689999999999999999999888766543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.59 E-value=0.0067 Score=61.36 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=43.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCCCC----CChhhHHHHHHHHHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGGTK----MDTASMLDEAIHYVKFLKKQVHT 222 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~~K----~DKaSIL~eAIdYIK~Lq~qVq~ 222 (267)
..++.||.|=+.|||.|++|.++.----| -.|.-||..||.-|-.|++||++
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 35778899988999999999998763222 45899999999999999999985
No 15
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.27 E-value=0.075 Score=55.74 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVK 214 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK 214 (267)
+..-+.|.||.|-|+-|.+|..+||- ..-+|||+|+.-||-|+|
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 34457899999999999999999993 256999999999999986
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=91.66 E-value=0.1 Score=45.98 Aligned_cols=49 Identities=27% Similarity=0.505 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 043072 172 QSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQV 220 (267)
Q Consensus 172 hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qV 220 (267)
|++.||+|-.-+|+.|..||.++|- ..|..|.--|.-|-.||.+|=.-.
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 6999999999999999999999995 588999999999999999996543
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.20 E-value=0.28 Score=50.66 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 043072 176 ARHRREMISERIRILQRIVPG----GTKMDTASMLDEAIHYVK 214 (267)
Q Consensus 176 ER~RRerIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK 214 (267)
.||-|||+|-.++.|.+|+|- ..|+||.|||.-+|-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456689999999999999994 489999999999999986
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.88 E-value=0.8 Score=46.12 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 043072 174 VAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKF 215 (267)
Q Consensus 174 ~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~ 215 (267)
-+.|.||++-|-.|.+|..|+|-. ..+||++|+.-|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 468999999999999999999942 559999999999999974
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=73.74 E-value=2.1 Score=39.82 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 043072 172 QSVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQ 219 (267)
Q Consensus 172 hs~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~q 219 (267)
-+..||.|--.+|+.+..||++||. ..|+.|+-.|.-|-.||..|.+-
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 4668999999999999999999994 47788999999999999988753
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=63.40 E-value=11 Score=35.81 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 043072 172 QSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 172 hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
-...||+|-..+|..|..||.+||.+ .|+.|---|..|-.||--|-..++
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 46789999999999999999999965 567788889999999998876654
No 21
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=55.97 E-value=6.4 Score=34.92 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 043072 175 AARHRREMISERIRILQRIVPGG 197 (267)
Q Consensus 175 aER~RRerIner~~~LrsLVP~~ 197 (267)
.||.|..++++.+.-|+.|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 48888999999999999999974
No 22
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.07 E-value=3.1e+02 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=14.5
Q ss_pred CCCCCCCCChhhhh-----HHHHHHHHHH
Q 043072 119 PSPSPYPPTLEKRN-----SMAAMREMIF 142 (267)
Q Consensus 119 ~~a~~~~~~~~kk~-----s~a~lKk~lf 142 (267)
|...+|..|.++|. -.+-||+...
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~ 82 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESEN 82 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 33567888888884 3444555443
No 23
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.07 E-value=4.7e+02 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHH
Q 043072 178 HRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 215 (267)
Q Consensus 178 ~RRerIner~~~LrsLVP~~~K~DKaSIL~eAIdYIK~ 215 (267)
+|.|.|++.+..|++.+-.. --....|+..||-++.
T Consensus 239 Rt~EeL~~G~~kL~~~~etL--Eqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETL--EQQLQSLQKNIDILKS 274 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHH--HHHHHHHHhhhHHHHH
Confidence 34444555554444432111 0133445555554443
No 24
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=29.02 E-value=34 Score=33.31 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 043072 210 IHYVKFLKKQVHTLEQAGAH 229 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~~~~ 229 (267)
-+|||.|+-+|..||.+++.
T Consensus 311 KEYVKCLENRVAVLENQNKa 330 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKA 330 (348)
T ss_pred hHHHHHHHhHHHHHhcccHH
Confidence 37888888888888877653
No 25
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=28.32 E-value=2.1e+02 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072 202 TASMLDEAIHYVKFLKKQVHTLEQAG 227 (267)
Q Consensus 202 KaSIL~eAIdYIK~Lq~qVq~Le~~~ 227 (267)
.+.|+|.| ||.|+.||++||.+.
T Consensus 49 ~vlvQE~A---L~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 49 TVLVQEQA---LKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444444 577888888888874
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.48 E-value=85 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 043072 206 LDEAIHYVKFLKKQVHTLEQAGAHRPMG 233 (267)
Q Consensus 206 L~eAIdYIK~Lq~qVq~Le~~~~~~~~~ 233 (267)
+..|||-|.-||..|++|+..+.....+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 5679999999999999999887755443
No 27
>PRK13702 replication protein; Provisional
Probab=26.95 E-value=1.6e+02 Score=23.65 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=28.6
Q ss_pred CcccHHHHHHH--HHHHHHHHHHhccCCCCCC-----------CChhhHHHHHHH
Q 043072 170 DPQSVAARHRR--EMISERIRILQRIVPGGTK-----------MDTASMLDEAIH 211 (267)
Q Consensus 170 ~~hs~aER~RR--erIner~~~LrsLVP~~~K-----------~DKaSIL~eAId 211 (267)
.+.+.+||.|. .|..+.-.+|.-.|++..| +..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999883 3445556688888885433 456777776665
No 28
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=25.70 E-value=15 Score=39.39 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG-----TKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~-----~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
.|+.+|.+||+.|+-++..|-+++-+. .|+.++.-+..+++||-.++.+..
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~ 709 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERV 709 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhcc
Confidence 489999999999999999999998864 456677778999999976655433
No 29
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=24.42 E-value=81 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 043072 177 RHRREMISERIRILQR 192 (267)
Q Consensus 177 R~RRerIner~~~Lrs 192 (267)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6889999999998875
No 30
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.18 E-value=99 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Q 043072 206 LDEAIHYVKFLKKQVHTLEQAGAHR 230 (267)
Q Consensus 206 L~eAIdYIK~Lq~qVq~Le~~~~~~ 230 (267)
+..|||-|.-||.+|++|+..+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999876543
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.89 E-value=1e+02 Score=23.57 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 043072 206 LDEAIHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 206 L~eAIdYIK~Lq~qVq~Le~~~~ 228 (267)
+..||+-|.-|+.+|++|+..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999988643
No 32
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.73 E-value=2.2e+02 Score=20.65 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 043072 180 REMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQ 225 (267)
Q Consensus 180 RerIner~~~LrsLVP~~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~ 225 (267)
|=.....+.++..++--+. .++|.+||+.+-.+++.+..
T Consensus 20 RHD~~NhLqvI~gllqlg~-------~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGK-------YEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 3334445888887765443 57899999999999888743
No 33
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=22.20 E-value=55 Score=28.61 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhccCCCCCC
Q 043072 180 REMISERIRILQRIVPGGTK 199 (267)
Q Consensus 180 RerIner~~~LrsLVP~~~K 199 (267)
-|-|-+||-.|+.+||...+
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R 67 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTR 67 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHH
Confidence 35678889999999996543
No 34
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.75 E-value=1.9e+02 Score=25.17 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=33.6
Q ss_pred HHH-HHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcC
Q 043072 175 AAR-HRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAGAHRPMGGVGFQ 238 (267)
Q Consensus 175 aER-~RRerIner~~~LrsLVP~~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~~~~~~~~~p 238 (267)
.|| +|++||..+-..|+.|+ .=..=+|.|-.+.+.++.. +..+.+++.||
T Consensus 8 ~ek~~~~~rI~~K~~~LqEL~-------------~Q~va~knLv~RN~~~~~~-~~~p~~~i~LP 58 (142)
T PF08781_consen 8 EEKQRRRERIKKKKEQLQELI-------------LQQVAFKNLVQRNRQLEQS-GNAPSSGIQLP 58 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHS-SSS--GEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhc-cCCCCCeeecC
Confidence 344 56899999999999975 2233357888999999987 44443444444
No 35
>smart00338 BRLZ basic region leucin zipper.
Probab=20.50 E-value=94 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 043072 210 IHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~~~ 228 (267)
-.||..|+.+|+.|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~ 43 (65)
T smart00338 25 KAEIEELERKVEQLEAENE 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466666666666665544
No 36
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.07 E-value=1.2e+02 Score=23.29 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 043072 173 SVAARHRREMISERIRILQRIVPGGTKMD-TASMLDEAIHYVKFLKKQVHTLEQ 225 (267)
Q Consensus 173 s~aER~RRerIner~~~LrsLVP~~~K~D-KaSIL~eAIdYIK~Lq~qVq~Le~ 225 (267)
.-.|+.=|..+...+..| .||+--. .| ...+|..+-+-|..|+.+|.+||.
T Consensus 27 ~e~e~~~r~~l~~~l~kl-dlVtREE-Fd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 27 EEIEKNIRARLQSALSKL-DLVTREE-FDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677677777766654 2343211 22 556899999999999999999986
Done!