Query 043072
Match_columns 267
No_of_seqs 165 out of 919
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.8E-16 1.6E-20 119.1 6.5 59 170-228 8-67 (82)
2 4ati_A MITF, microphthalmia-as 99.6 2.3E-15 7.9E-20 122.6 7.6 63 167-229 26-92 (118)
3 4h10_B Circadian locomoter out 99.5 6E-15 2E-19 111.3 5.8 55 170-224 10-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 1.4E-15 4.9E-20 111.7 1.4 53 169-221 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 4.3E-15 1.5E-19 108.5 2.9 53 169-221 6-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 4E-15 1.4E-19 112.5 0.8 50 169-218 10-63 (73)
7 1hlo_A Protein (transcription 99.5 5.9E-14 2E-18 106.5 6.2 60 170-229 14-75 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 8.4E-14 2.9E-18 106.1 6.8 58 171-228 5-64 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.9E-13 6.4E-18 106.2 6.5 57 171-227 9-68 (88)
10 3u5v_A Protein MAX, transcript 99.3 4.2E-13 1.4E-17 102.0 4.0 56 170-225 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 5.3E-12 1.8E-16 96.6 7.3 58 171-228 4-64 (80)
12 4f3l_A Mclock, circadian locom 99.0 2.4E-10 8.2E-15 105.1 5.9 51 169-219 13-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 1.4E-10 4.7E-15 86.5 2.7 51 171-221 15-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.9 1.5E-09 5.2E-14 79.0 5.7 50 172-221 6-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5E-10 1.7E-14 104.4 3.1 51 168-218 13-67 (387)
16 4ath_A MITF, microphthalmia-as 98.5 1.6E-07 5.3E-12 72.8 6.2 47 180-226 4-54 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.9E-08 1.3E-12 73.7 1.8 45 174-218 20-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.2E-05 4.2E-10 63.8 6.1 49 176-224 33-84 (97)
19 2wt7_A Proto-oncogene protein 51.0 30 0.001 24.4 5.1 18 210-227 22-39 (63)
20 3muj_A Transcription factor CO 40.3 34 0.0012 28.5 4.6 35 182-216 95-133 (138)
21 1dh3_A Transcription factor CR 31.8 29 0.00099 24.1 2.4 18 211-228 22-39 (55)
22 2jee_A YIIU; FTSZ, septum, coi 30.9 41 0.0014 25.6 3.3 24 206-229 15-38 (81)
23 1gd2_E Transcription factor PA 29.6 31 0.0011 25.3 2.4 17 210-226 28-44 (70)
24 1xkm_B Distinctin chain B; por 28.4 59 0.002 19.5 3.0 19 203-221 3-21 (26)
25 2er8_A Regulatory protein Leu3 27.6 41 0.0014 23.3 2.7 21 210-230 48-68 (72)
26 1hwt_C Protein (heme activator 26.0 35 0.0012 24.0 2.1 21 210-230 57-77 (81)
27 2oqq_A Transcription factor HY 25.6 37 0.0013 23.0 2.0 18 211-228 3-20 (42)
28 1a7t_A Metallo-beta-lactamase; 24.8 44 0.0015 27.4 2.8 32 191-222 200-231 (232)
29 1m2x_A Class B carbapenemase B 24.4 20 0.00069 29.2 0.6 30 192-222 191-221 (223)
30 3fx7_A Putative uncharacterize 24.4 1.5E+02 0.0052 23.0 5.6 40 180-227 47-86 (94)
31 1zme_C Proline utilization tra 24.1 52 0.0018 22.4 2.7 21 206-226 46-66 (70)
32 1pd7_B MAD1; PAH2, SIN3, eukar 23.6 88 0.003 19.1 3.2 20 200-219 2-21 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.62 E-value=4.8e-16 Score=119.09 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072 170 DPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 170 ~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~ 228 (267)
..|+.+||+||++||++|..|++|||++ .|+||++||++||+||++|+.+++.|+.+..
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999997 8999999999999999999999999998764
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=2.3e-15 Score=122.62 Aligned_cols=63 Identities=21% Similarity=0.455 Sum_probs=53.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 043072 167 ISKDPQSVAARHRREMISERIRILQRIVPGGT----KMDTASMLDEAIHYVKFLKKQVHTLEQAGAH 229 (267)
Q Consensus 167 ~sk~~hs~aER~RRerIner~~~LrsLVP~~~----K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~ 229 (267)
..+..|+++||+||++||++|..|++|||++. |++|++||+.||+||++|+.+++.|+.....
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999999999999999999999874 6789999999999999999999999986554
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=111.28 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 043072 170 DPQSVAARHRREMISERIRILQRIVPGG-TKMDTASMLDEAIHYVKFLKKQVHTLE 224 (267)
Q Consensus 170 ~~hs~aER~RRerIner~~~LrsLVP~~-~K~DKaSIL~eAIdYIK~Lq~qVq~Le 224 (267)
.+|+.+||+||++||++|.+|++|||++ .|+||++||+.||+||++||.++.=||
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4699999999999999999999999975 699999999999999999999987654
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.4e-15 Score=111.73 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVPGG-------TKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP~~-------~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
+..|..+||+||++||+.|..|++|||++ .|.+||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35699999999999999999999999954 567799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=4.3e-15 Score=108.51 Aligned_cols=53 Identities=25% Similarity=0.477 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVPGGT------KMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP~~~------K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
+..|+.+||+||++||++|..|++|||++. |+||++||+.||+||++|+.+++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 356999999999999999999999999875 78999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4e-15 Score=112.53 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKK 218 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~ 218 (267)
+..|+.+||+||++||++|.+|++|||.+ .|+||++||+.||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 35699999999999999999999999976 799999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=5.9e-14 Score=106.53 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 043072 170 DPQSVAARHRREMISERIRILQRIVPGG--TKMDTASMLDEAIHYVKFLKKQVHTLEQAGAH 229 (267)
Q Consensus 170 ~~hs~aER~RRerIner~~~LrsLVP~~--~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~~ 229 (267)
..|+.+||+||..||+.|..|+++||.+ .|++|++||..||+||+.|+.++++|+.+...
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999975 68999999999999999999999999987653
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=8.4e-14 Score=106.10 Aligned_cols=58 Identities=29% Similarity=0.544 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072 171 PQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~ 228 (267)
.|+..||+||++||+.|..|+++||. +.|++|++||..||+||+.|+.+++.|+.+..
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999997 48999999999999999999999988887654
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.9e-13 Score=106.20 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~ 227 (267)
.|+..||+||+.||++|..|+++||.. .|++|++||..||+||++|+.+++.|+...
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999974 699999999999999999999988876643
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.35 E-value=4.2e-13 Score=102.03 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=49.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 043072 170 DPQSVAARHRREMISERIRILQRIVPG---GTKM-DTASMLDEAIHYVKFLKKQVHTLEQ 225 (267)
Q Consensus 170 ~~hs~aER~RRerIner~~~LrsLVP~---~~K~-DKaSIL~eAIdYIK~Lq~qVq~Le~ 225 (267)
..|+..||+||+.||++|..|+.+||. +.|. .|+.||..||+||++|++++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 359999999999999999999999994 4555 6899999999999999999998875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.29 E-value=5.3e-12 Score=96.58 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 043072 171 PQSVAARHRREMISERIRILQRIVPGG---TKMDTASMLDEAIHYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~~---~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~~ 228 (267)
.|+..||+||..||++|..|+++||.+ .|.+|++||..|++||+.|+.+.+.|+....
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999954 6889999999999999999999998887643
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=2.4e-10 Score=105.14 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=42.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 043072 169 KDPQSVAARHRREMISERIRILQRIVP-GGTKMDTASMLDEAIHYVKFLKKQ 219 (267)
Q Consensus 169 k~~hs~aER~RRerIner~~~LrsLVP-~~~K~DKaSIL~eAIdYIK~Lq~q 219 (267)
+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 346999999999999999999999999 457999999999999999999764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.99 E-value=1.4e-10 Score=86.54 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072 171 PQSVAARHRREMISERIRILQRIVPG--GTKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 171 ~hs~aER~RRerIner~~~LrsLVP~--~~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
.|+..||+|+..||+.|..||.+||. +.|++|+.||..||+||..|++.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999999996 4789999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.91 E-value=1.5e-09 Score=78.95 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 043072 172 QSVAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 172 hs~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq 221 (267)
++..||+|+..||+.|..||.+||. ..|+.|+.+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999995 4689999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=5e-10 Score=104.44 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=47.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHH
Q 043072 168 SKDPQSVAARHRREMISERIRILQRIVP----GGTKMDTASMLDEAIHYVKFLKK 218 (267)
Q Consensus 168 sk~~hs~aER~RRerIner~~~LrsLVP----~~~K~DKaSIL~eAIdYIK~Lq~ 218 (267)
.+++|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3457999999999999999999999999 56899999999999999999874
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.51 E-value=1.6e-07 Score=72.84 Aligned_cols=47 Identities=19% Similarity=0.475 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 043072 180 REMISERIRILQRIVPGG----TKMDTASMLDEAIHYVKFLKKQVHTLEQA 226 (267)
Q Consensus 180 RerIner~~~LrsLVP~~----~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~ 226 (267)
|..||++|.+|..|||.+ .|.+|++||..|||||+.||..++.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999975 46889999999999999998877665543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.47 E-value=3.9e-08 Score=73.69 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHH
Q 043072 174 VAARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKK 218 (267)
Q Consensus 174 ~aER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~ 218 (267)
..||+|+..||+.|..||.+||. ..|+.|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 35899999999999999999995 4789999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.96 E-value=1.2e-05 Score=63.79 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 043072 176 ARHRREMISERIRILQRIVPG---GTKMDTASMLDEAIHYVKFLKKQVHTLE 224 (267)
Q Consensus 176 ER~RRerIner~~~LrsLVP~---~~K~DKaSIL~eAIdYIK~Lq~qVq~Le 224 (267)
||.|-..||+.|..||.+||. ..|+.|..+|.-||+||+.|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 578888999999999999995 4689999999999999999998876543
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.98 E-value=30 Score=24.43 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 043072 210 IHYVKFLKKQVHTLEQAG 227 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~~ 227 (267)
.+|+..|+.+|+.|+..+
T Consensus 22 k~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEK 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=40.31 E-value=34 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHH
Q 043072 182 MISERIRILQRIVPG----GTKMDTASMLDEAIHYVKFL 216 (267)
Q Consensus 182 rIner~~~LrsLVP~----~~K~DKaSIL~eAIdYIK~L 216 (267)
-|.-.|..|+.+||. ..++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 478899999999994 25678999999999998876
No 21
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.76 E-value=29 Score=24.10 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 043072 211 HYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 211 dYIK~Lq~qVq~Le~~~~ 228 (267)
.||..|+.+|..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777777654
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.88 E-value=41 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 043072 206 LDEAIHYVKFLKKQVHTLEQAGAH 229 (267)
Q Consensus 206 L~eAIdYIK~Lq~qVq~Le~~~~~ 229 (267)
+..||+-|.-||.+|++|+..+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999887653
No 23
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.61 E-value=31 Score=25.30 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043072 210 IHYVKFLKKQVHTLEQA 226 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~ 226 (267)
-.||+.|+.+|..|+..
T Consensus 28 ~~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 28 EDHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666654
No 24
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.36 E-value=59 Score=19.54 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 043072 203 ASMLDEAIHYVKFLKKQVH 221 (267)
Q Consensus 203 aSIL~eAIdYIK~Lq~qVq 221 (267)
.+-|-+|-.|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567788999998887765
No 25
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.58 E-value=41 Score=23.26 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 043072 210 IHYVKFLKKQVHTLEQAGAHR 230 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~~~~~ 230 (267)
-.||..|+.+|+.|+..-...
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999876543
No 26
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.98 E-value=35 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 043072 210 IHYVKFLKKQVHTLEQAGAHR 230 (267)
Q Consensus 210 IdYIK~Lq~qVq~Le~~~~~~ 230 (267)
-+||..|+.+|+.||..-...
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999865543
No 27
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.63 E-value=37 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 043072 211 HYVKFLKKQVHTLEQAGA 228 (267)
Q Consensus 211 dYIK~Lq~qVq~Le~~~~ 228 (267)
.|+-.|+.++++|+..++
T Consensus 3 aYl~eLE~r~k~le~~na 20 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNS 20 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 377777777777776544
No 28
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=24.77 E-value=44 Score=27.42 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=22.5
Q ss_pred hccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 043072 191 QRIVPGGTKMDTASMLDEAIHYVKFLKKQVHT 222 (267)
Q Consensus 191 rsLVP~~~K~DKaSIL~eAIdYIK~Lq~qVq~ 222 (267)
..++|+=...-....++.+++|++.+++++.+
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 45777633333357889999999999988753
No 29
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.42 E-value=20 Score=29.25 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=21.6
Q ss_pred ccCCC-CCCCChhhHHHHHHHHHHHHHHHHHH
Q 043072 192 RIVPG-GTKMDTASMLDEAIHYVKFLKKQVHT 222 (267)
Q Consensus 192 sLVP~-~~K~DKaSIL~eAIdYIK~Lq~qVq~ 222 (267)
.++|+ +... ....|+.+++|++.++++|++
T Consensus 191 ~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 46776 3334 456899999999999998864
No 30
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.40 E-value=1.5e+02 Score=22.98 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 043072 180 REMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQAG 227 (267)
Q Consensus 180 RerIner~~~LrsLVP~~~K~DKaSIL~eAIdYIK~Lq~qVq~Le~~~ 227 (267)
|++..+.|..|.+.+ .-..+.|=+||.+|+++++.|+.-.
T Consensus 47 r~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 445555555554421 1234678899999999999998753
No 31
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.11 E-value=52 Score=22.44 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 043072 206 LDEAIHYVKFLKKQVHTLEQA 226 (267)
Q Consensus 206 L~eAIdYIK~Lq~qVq~Le~~ 226 (267)
++.--+.|..|+.++..|++.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555543
No 32
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.63 E-value=88 Score=19.12 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=15.8
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 043072 200 MDTASMLDEAIHYVKFLKKQ 219 (267)
Q Consensus 200 ~DKaSIL~eAIdYIK~Lq~q 219 (267)
++..-+|=+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677888999999877763
Done!