BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043077
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 1 MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQ-SPLFVTEVINLFTRDAENAITQ 59
M +L+++LN + S+ G++D F L +Q D +P FV EV+ LF DA+ I++
Sbjct: 1 MAAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISE 60
Query: 60 ARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
L +P VD+DK+ A VHQL+G+S+S+G +V C + R DK+++ C L +
Sbjct: 61 LAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVV 120
Query: 120 VEEYQTL 126
E+ L
Sbjct: 121 RNEFYDL 127
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 3 GTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQ-SPLFVTEVINLFTRDAENAITQAR 61
+L+ +L + S+ QG++D F L +Q++ +P FV+EV+ LF DA+ I +
Sbjct: 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 62
Query: 62 DSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVE 121
L++P V++DK+ A VHQL+G+S+S+G +V C + R DK ++ C L +
Sbjct: 63 TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122
Query: 122 EYQTLHVNLAHILNLGRQILALQRGQH 148
++ L +L L +QI A Q
Sbjct: 123 DFYDLRNKFQTMLQLEQQIQAYDPKQQ 149
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 83/136 (61%)
Query: 7 QQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE 66
Q+ L ++ +SL +GILD F L ++Q++ +P FV++V+ LF +D++ + SL +
Sbjct: 12 QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQ 71
Query: 67 PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
VD+ K+ VHQL+G+SSSIG RV AC RS + ++ E C+ LQ++ +EY +
Sbjct: 72 QVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLV 131
Query: 127 HVNLAHILNLGRQILA 142
L + L +QI+A
Sbjct: 132 KNRLETLFKLEQQIVA 147
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 85/137 (62%)
Query: 6 LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
++++ ++++S+ +G LD F L ++Q++ +P FV EV++LF D+E + ++
Sbjct: 6 MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 66 EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQT 125
+ S+D+ K+ A VHQ +G+S+SIG RV +C R+ ++++ + C LQ++ +EY
Sbjct: 66 QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLL 125
Query: 126 LHVNLAHILNLGRQILA 142
+ L +L L +QI+A
Sbjct: 126 VKNKLETLLRLEQQIVA 142
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 39 PLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAA----VHQLRGASSSIGGCRVA 94
P FV ++ L + EN I + + +EP V +A+ V + GA GG R+A
Sbjct: 201 PEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPI-GACIGEGGSRIA 259
Query: 95 LACRELRS 102
+EL+
Sbjct: 260 AILKELKG 267
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 39 PLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAA----VHQLRGASSSIGGCRVA 94
P FV + L + EN I + + +EP V +A+ V + GA GG R+A
Sbjct: 226 PEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPI-GACIGEGGSRIA 284
Query: 95 LACRELRS 102
+EL+
Sbjct: 285 AILKELKG 292
>pdb|2WCE|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCE|B Chain B, Calcium-Free (Apo) S100a12
Length = 95
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 4 TSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENA----ITQ 59
T L++ L V + + +FDTLS+ + Q L E+ N + A I Q
Sbjct: 5 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQ--LLTKELANTIKNIKDKAVIDEIFQ 62
Query: 60 ARDSLQEPSVDYDKLIAAV 78
D+ Q+ VD+ + I+ V
Sbjct: 63 GLDANQDEQVDFQEFISXV 81
>pdb|3VPP|A Chain A, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
pdb|3VPP|B Chain B, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
Length = 132
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 33 IQNDQSPLFVTEVINLFTRDAENAITQARDSLQ-EPSVDYDKLIAAVHQLRGA 84
IQN +S +V+E+ +++ EN + + LQ E + D + ++ +++G+
Sbjct: 9 IQNRESCYYVSEIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGS 61
>pdb|1ODB|A Chain A, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|B Chain B, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|C Chain C, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|D Chain D, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|E Chain E, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|F Chain F, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|2WC8|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|C Chain C, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|D Chain D, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCF|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCF|B Chain B, Calcium-Free (Apo) S100a12
pdb|2WCF|C Chain C, Calcium-Free (Apo) S100a12
pdb|2WCF|D Chain D, Calcium-Free (Apo) S100a12
pdb|2WCF|E Chain E, Calcium-Free (Apo) S100a12
pdb|2WCF|F Chain F, Calcium-Free (Apo) S100a12
Length = 95
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 4 TSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENA----ITQ 59
T L++ L V + + +FDTLS+ + Q L E+ N + A I Q
Sbjct: 5 TKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQ--LLTKELANTIKNIKDKAVIDEIFQ 62
Query: 60 ARDSLQEPSVDYDKLIAAV 78
D+ Q+ VD+ + I+ V
Sbjct: 63 GLDANQDEQVDFQEFISLV 81
>pdb|1E8A|A Chain A, The Three-Dimensional Structure Of Human S100a12
pdb|1E8A|B Chain B, The Three-Dimensional Structure Of Human S100a12
pdb|1GQM|A Chain A, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|B Chain B, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|C Chain C, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|D Chain D, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|E Chain E, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|F Chain F, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|G Chain G, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|H Chain H, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|I Chain I, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|J Chain J, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|K Chain K, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|L Chain L, The Structure Of S100a12 In A Hexameric Form
Length = 91
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 4 TSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENA----ITQ 59
T L++ L V + + +FDTLS+ + L E+ N + A I Q
Sbjct: 1 TKLEEHLEGIVNIFHQYSVRKGHFDTLSK--GELKQLLTKELANTIKNIKDKAVIDEIFQ 58
Query: 60 ARDSLQEPSVDYDKLIAAV 78
D+ Q+ VD+ + I+ V
Sbjct: 59 GLDANQDEQVDFQEFISLV 77
>pdb|2RA1|A Chain A, Crystal Structure Of The N-Terminal Part Of The Bacterial
S-Layer Protein Sbsc
Length = 412
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 98 RELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA 150
+EL++A+D KD ++ E+ +I E +T V L + G+ L R +A
Sbjct: 108 QELKAAVDAKDLKKAEELYHKISYELKTRTVILDRV--YGQSTRELLRSTFKA 158
>pdb|1TQG|A Chain A, Chea Phosphotransferase Domain From Thermotoga Maritima
Length = 105
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 77 AVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEI 115
A+H L+G + ++G +A C L + + DK R +EI
Sbjct: 44 ALHTLKGMAGTMGFSSMAKLCHTLENIL---DKARNSEI 79
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain Of
Chea
Length = 139
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 77 AVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEI 115
A+H L+G + ++G +A C L + + DK R +EI
Sbjct: 43 ALHTLKGMAGTMGFSSMAKLCHTLENIL---DKARNSEI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,852,171
Number of Sequences: 62578
Number of extensions: 133134
Number of successful extensions: 470
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 19
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)