Query 043077
Match_columns 150
No_of_seqs 128 out of 392
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 1.7E-42 5.9E-47 261.0 17.7 149 1-149 1-149 (153)
2 1yvi_A Histidine-containing ph 100.0 4E-40 1.4E-44 246.4 16.4 146 2-147 2-148 (149)
3 2r25_A Phosphorelay intermedia 100.0 3.1E-30 1.1E-34 196.4 10.7 119 16-136 2-165 (167)
4 2a0b_A HPT domain; sensory tra 99.9 4.8E-23 1.7E-27 148.7 10.5 117 17-138 6-123 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 2.2E-19 7.5E-24 129.5 11.2 114 18-136 1-115 (119)
6 1y6d_A Phosphorelay protein LU 99.8 1.2E-21 4E-26 141.6 -1.5 109 21-133 10-118 (120)
7 3iqt_A Signal transduction his 99.8 1.9E-18 6.5E-23 125.4 9.2 110 20-134 12-122 (123)
8 2ooc_A Histidine phosphotransf 99.7 2.6E-18 8.9E-23 122.8 7.4 101 20-135 8-108 (113)
9 1sr2_A Putative sensor-like hi 99.6 3.5E-16 1.2E-20 112.4 6.1 88 37-126 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 7.4E-15 2.5E-19 102.6 7.6 91 42-132 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 3.9E-13 1.3E-17 98.8 6.9 93 43-135 3-104 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 5.1E-13 1.8E-17 99.0 6.1 91 43-133 6-105 (146)
13 2lch_A Protein OR38; structura 99.4 6.4E-13 2.2E-17 94.1 5.4 90 43-132 5-103 (113)
14 3kyj_A CHEA3, putative histidi 99.0 9.9E-10 3.4E-14 81.3 8.0 94 42-135 9-111 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 3.5E-08 1.2E-12 77.4 6.6 90 43-132 6-104 (225)
16 2cw9_A Translocase of inner mi 80.7 4.1 0.00014 30.5 6.2 81 8-107 23-104 (194)
17 3err_A Fusion protein of micro 68.8 35 0.0012 29.5 9.8 97 27-135 108-208 (536)
18 2di0_A Activating signal coint 64.1 6 0.00021 25.4 3.0 41 22-62 12-52 (71)
19 2kmf_A Photosystem II 11 kDa p 62.8 26 0.00089 24.4 6.4 86 46-132 13-113 (115)
20 3qk9_A Mitochondrial import in 57.3 9.4 0.00032 29.5 3.6 55 38-107 72-127 (222)
21 2y6x_A PSB27, photosystem II 1 51.7 57 0.0019 22.6 6.8 85 47-132 10-109 (113)
22 1gp8_A Protein (scaffolding pr 51.1 32 0.0011 19.5 4.5 22 60-83 17-38 (40)
23 4igg_A Catenin alpha-1; asymme 48.4 1.6E+02 0.0056 26.9 12.4 125 4-131 257-418 (832)
24 1h3o_B Transcription initiatio 47.2 30 0.001 22.2 4.3 48 7-65 8-55 (76)
25 2f4m_B UV excision repair prot 41.0 33 0.0011 21.1 3.5 36 26-62 12-47 (61)
26 2rg8_A Programmed cell death p 40.1 1E+02 0.0035 22.2 8.9 49 2-50 5-54 (165)
27 3zta_A MTR, anti-sigma-factor 39.6 59 0.002 22.4 5.0 65 5-86 57-121 (146)
28 1wjt_A Transcription elongatio 38.7 28 0.00097 23.5 3.3 39 90-129 11-49 (103)
29 2nsz_A Programmed cell death p 38.1 87 0.003 21.4 5.9 43 3-48 3-45 (129)
30 3oj5_A Ferritin family protein 38.0 1.1E+02 0.0038 22.0 6.9 78 17-94 96-177 (189)
31 3uo3_A J-type CO-chaperone JAC 37.3 1.2E+02 0.004 22.2 6.8 54 71-133 120-173 (181)
32 1oeg_A Apolipoprotein E; siali 36.5 11 0.00039 19.4 0.7 17 3-19 3-19 (26)
33 2ion_A PDCD4, programmed cell 34.8 1E+02 0.0035 21.8 6.0 43 3-48 5-47 (152)
34 3bvo_A CO-chaperone protein HS 34.4 86 0.0029 23.5 5.8 38 94-132 165-202 (207)
35 2wm9_A Dedicator of cytokinesi 32.3 1.8E+02 0.0062 24.0 8.0 48 46-93 307-354 (428)
36 2vs0_A Virulence factor ESXA; 28.4 1.1E+02 0.0037 18.9 7.8 75 69-144 6-83 (97)
37 1txp_A HnRNP C, heterogeneous 28.4 59 0.002 16.9 2.7 24 117-140 2-25 (28)
38 3hho_A CO-chaperone protein HS 28.3 1.7E+02 0.0057 21.1 6.8 77 38-133 91-168 (174)
39 2p1h_A APAF-1, apoptotic prote 28.1 90 0.0031 19.8 4.4 55 10-66 24-79 (94)
40 3ls0_A SLL1638 protein, PSBQ; 28.0 1.6E+02 0.0055 20.8 9.0 80 51-139 33-131 (133)
41 1pve_A HHR23B, UV excision rep 28.0 27 0.00094 22.3 1.6 35 26-61 14-48 (72)
42 3p9y_A CG14216, LD40846P; phos 27.8 28 0.00094 26.6 1.9 17 86-102 152-168 (198)
43 4h3k_B RNA polymerase II subun 27.3 41 0.0014 25.9 2.8 18 86-103 168-185 (214)
44 2rr7_A Dynein heavy chain 9; m 26.9 73 0.0025 22.6 4.0 67 26-104 71-139 (155)
45 3vhl_A Dedicator of cytokinesi 26.4 2.4E+02 0.0081 22.2 9.6 92 46-142 167-258 (288)
46 2gs4_A Protein YCIF; stress pr 25.1 1.9E+02 0.0067 20.8 13.2 130 1-134 1-154 (166)
47 4ioe_A Secreted protein ESXB; 24.5 1.3E+02 0.0044 18.5 7.2 73 69-142 9-84 (93)
48 1ug3_A EIF4GI, eukaryotic prot 24.3 87 0.003 24.9 4.4 51 2-52 6-57 (339)
49 3do9_A UPF0302 protein BA_1542 23.8 73 0.0025 23.8 3.6 28 54-83 152-179 (188)
50 3zbh_A ESXA; unknown function, 23.1 1.4E+02 0.0048 18.4 7.3 73 69-142 9-84 (99)
51 3dm5_A SRP54, signal recogniti 22.2 1.9E+02 0.0066 24.2 6.3 26 1-26 1-26 (443)
52 2zu6_B Programmed cell death p 21.7 2.3E+02 0.0079 22.4 6.5 46 1-49 160-205 (307)
53 2l5g_B Putative uncharacterize 20.2 1.3E+02 0.0045 17.1 4.7 36 110-145 5-40 (42)
54 2qsf_X RAD23, UV excision repa 20.2 87 0.003 23.1 3.3 37 25-62 33-69 (171)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=1.7e-42 Score=260.95 Aligned_cols=149 Identities=30% Similarity=0.528 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043077 1 MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQ 80 (150)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 80 (150)
|.+.+|++|+.++++||+++|+||++|++|++|+++++|+|+.+||..|++|+++.+..|+.|+.+++.|+..+++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 80 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ 80 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999866699999999999
Q ss_pred hhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhcccC
Q 043077 81 LRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQ 149 (150)
Q Consensus 81 LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~~~~~~ 149 (150)
|||||+||||.+|+.+|..||.+++.++.+++..++.+|+.+|..++.+|++|++++||+.++||++|+
T Consensus 81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~~~~ 149 (153)
T 3us6_A 81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPM 149 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=4e-40 Score=246.42 Aligned_cols=146 Identities=32% Similarity=0.587 Sum_probs=135.1
Q ss_pred chhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCC-chHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043077 2 VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQS-PLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQ 80 (150)
Q Consensus 2 ~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~-~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 80 (150)
++++||+|+++|++||+++|+||++|++|++|+++++ |+|+.+||..|++|+++.|..|+.|++++++|+..++.++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~ 81 (149)
T 1yvi_A 2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 5789999999999999999999999999999988888 999999999999999999999999999876699999999999
Q ss_pred hhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhcc
Q 043077 81 LRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQ 147 (150)
Q Consensus 81 LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~~~~ 147 (150)
|||||+||||.+|+.+|.+||..++.++.+++..++.+|+.+|..++.+|++|++++||++++|+++
T Consensus 82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~~~ 148 (149)
T 1yvi_A 82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDPKQ 148 (149)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.97 E-value=3.1e-30 Score=196.40 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=111.5
Q ss_pred HHhhhccchh-HHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHH
Q 043077 16 SLREQGILDH-NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVA 94 (150)
Q Consensus 16 ~~~d~g~lD~-~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~ 94 (150)
||-+.|+||+ +|.+|++|++++ |+|+.+||..|++|++++|..|++|++ ...|+..++.++|+||||||||||.+|+
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5778999998 699999999987 999999999999999999999999999 2359999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 043077 95 LACRELRSAIDDKD------------KE--------------------------------RCNEILQRIVEEYQTLHVNL 130 (150)
Q Consensus 95 ~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~L 130 (150)
.+|.+||++|+.++ .+ +|...|++++.||..++.+|
T Consensus 80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L 159 (167)
T 2r25_A 80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL 159 (167)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 44 78999999999999999999
Q ss_pred HHHHHh
Q 043077 131 AHILNL 136 (150)
Q Consensus 131 ~~~l~~ 136 (150)
++|++.
T Consensus 160 ~~~~~~ 165 (167)
T 2r25_A 160 SKYYNT 165 (167)
T ss_dssp HHHTTS
T ss_pred HHHHcc
Confidence 999864
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.89 E-value=4.8e-23 Score=148.70 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=106.8
Q ss_pred HhhhccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHH
Q 043077 17 LREQGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVAL 95 (150)
Q Consensus 17 ~~d~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~ 95 (150)
+-+.++||.. |.+|..+ .|++|+.+++..|++++++.+..|+.++..+ |+..+++.||+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4456778885 6666665 6889999999999999999999999999875 89999999999999999999999999
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 043077 96 ACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGR 138 (150)
Q Consensus 96 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~ 138 (150)
+|..+|..++.++.+++..++..|..+|..++..|+.|+...+
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 123 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT 123 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999987644
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.81 E-value=2.2e-19 Score=129.48 Aligned_cols=114 Identities=15% Similarity=0.293 Sum_probs=100.6
Q ss_pred hhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHH
Q 043077 18 REQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALAC 97 (150)
Q Consensus 18 ~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c 97 (150)
||..++|++ .+..+- .|+|++..+++.+|+++.|+.+..|+.++..+ |++.+.+.+|+|||||+|+||++|..+|
T Consensus 1 ~~~~~~D~~--~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 567788885 222222 27899999999999999999999999999975 8999999999999999999999999999
Q ss_pred HHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043077 98 RELRSAIDDKD-KERCNEILQRIVEEYQTLHVNLAHILNL 136 (150)
Q Consensus 98 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~~ 136 (150)
..||..++.|. .+.....+..+..+...+..+++.|+..
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999985 5788889999999999999999999873
No 6
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.80 E-value=1.2e-21 Score=141.55 Aligned_cols=109 Identities=9% Similarity=0.119 Sum_probs=89.4
Q ss_pred ccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHH
Q 043077 21 GILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACREL 100 (150)
Q Consensus 21 g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~l 100 (150)
.++| +.+|.+|+++.||+++.+++..|+++++++|..|+.+...+ |...+.+.+|+|||||+|+||.+|+.+|..+
T Consensus 10 ~~~d--~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~l 85 (120)
T 1y6d_A 10 DVLN--QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAI 85 (120)
T ss_dssp TTTT--TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHH
Confidence 3444 45677777778999999999999999999999999987654 6888999999999999999999999999999
Q ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 101 RSAIDDKDKERCNEILQRIVEEYQTLHVNLAHI 133 (150)
Q Consensus 101 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~ 133 (150)
|..+|.|+...+......+...+.+++..++.+
T Consensus 86 E~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 86 DKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 999999988755445555555555566666554
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.76 E-value=1.9e-18 Score=125.38 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=96.1
Q ss_pred hccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHH
Q 043077 20 QGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRE 99 (150)
Q Consensus 20 ~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~ 99 (150)
.+++|++ .+..+- .|+|++..+++.+|+++.|+.+..|+.++..+ |++.+++.+|+|||||+++||.+|..+|..
T Consensus 12 ~~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3456764 333332 37899999999999999999999999999976 788999999999999999999999999999
Q ss_pred HHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 100 LRSAIDDKD-KERCNEILQRIVEEYQTLHVNLAHIL 134 (150)
Q Consensus 100 lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l 134 (150)
||..++.|. .+.....+..+..+...+..+.++|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999996 45778889999999999999998886
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.74 E-value=2.6e-18 Score=122.79 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=85.9
Q ss_pred hccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHH
Q 043077 20 QGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRE 99 (150)
Q Consensus 20 ~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~ 99 (150)
.+.||.. .|..+ ..++|+|+.+|+..|++++++.+..|..+ . .|+ ++.||+|||||+||||.+|..+|..
T Consensus 8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a-~---~~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT-H---PGW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT-S---TTH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh-h---HHH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4567754 44444 34789999999999999999999999988 2 354 8999999999999999999999999
Q ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 100 LRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILN 135 (150)
Q Consensus 100 lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 135 (150)
||..++. ....+..|+.++..++.+|..+++
T Consensus 78 lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 78 CEAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 567889999999999999998775
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.63 E-value=3.5e-16 Score=112.38 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=80.2
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 043077 37 QSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEIL 116 (150)
Q Consensus 37 ~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l 116 (150)
+.++.-.+++..|++..++.+..|+.++..+ |+..+++.||+||||++|+|+.+|..+|.++|..++.++.+.+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456778899999999999999999999875 89999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 043077 117 QRIVEEYQTL 126 (150)
Q Consensus 117 ~~l~~ef~~~ 126 (150)
..|+..+..+
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877653
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.56 E-value=7.4e-15 Score=102.60 Aligned_cols=91 Identities=16% Similarity=0.334 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcC------CCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhh---hhcCHHHH
Q 043077 42 VTEVINLFTRDAENAITQARDSLQE------PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAI---DDKDKERC 112 (150)
Q Consensus 42 ~~~li~~Fl~d~~~~l~~L~~Al~~------~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~ 112 (150)
+.+++..|++++++++..|+.++.. +..++..+.+.+|+|||||+++|+..+..+|..+|... +.|.....
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999841 12357899999999999999999999999999999875 77777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043077 113 NEILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 113 ~~~l~~l~~ef~~~~~~L~~ 132 (150)
..++..+...++.++..+..
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888898888888877654
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.41 E-value=3.9e-13 Score=98.83 Aligned_cols=93 Identities=17% Similarity=0.360 Sum_probs=77.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc------CCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhh---hhcCHHHHH
Q 043077 43 TEVINLFTRDAENAITQARDSLQ------EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAI---DDKDKERCN 113 (150)
Q Consensus 43 ~~li~~Fl~d~~~~l~~L~~Al~------~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~~ 113 (150)
.+++..|++++++.|..|+.++. .+..++..+.+.+|+|||||+++|+..+..+|..+|... |.|......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 47899999999999999999983 122468899999999999999999999999999999865 777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043077 114 EILQRIVEEYQTLHVNLAHILN 135 (150)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~~l~ 135 (150)
.+++.+...++.++..+..+-.
T Consensus 83 ~l~~~l~~~~D~l~~~l~~~~~ 104 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDKIVS 104 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 7778888888887777776543
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.38 E-value=5.1e-13 Score=98.98 Aligned_cols=91 Identities=12% Similarity=0.241 Sum_probs=71.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc---CCC---CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHH
Q 043077 43 TEVINLFTRDAENAITQARDSLQ---EPS---VDYDKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCN 113 (150)
Q Consensus 43 ~~li~~Fl~d~~~~l~~L~~Al~---~~~---~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~ 113 (150)
.+++..|+++++++|..|+.++. +++ .++..+.+.+|+|||||+++|+..+..+|-.+|.. .|.|......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 37899999999999999999982 111 24589999999999999999999999999999987 6777655445
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043077 114 EILQRIVEEYQTLHVNLAHI 133 (150)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~~ 133 (150)
.+++.+...++.++..+..+
T Consensus 86 ~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666665555555444
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.36 E-value=6.4e-13 Score=94.10 Aligned_cols=90 Identities=14% Similarity=0.293 Sum_probs=74.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcC---CC---CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHH---hhhhcCHHHHH
Q 043077 43 TEVINLFTRDAENAITQARDSLQE---PS---VDYDKLIAAVHQLRGASSSIGGCRVALACRELRS---AIDDKDKERCN 113 (150)
Q Consensus 43 ~~li~~Fl~d~~~~l~~L~~Al~~---~~---~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~---~~~~~~~~~~~ 113 (150)
.+++..|+++++++|..|..++.. ++ .++..+.+.+|+|||||+++|+..+..+|-.+|. ..+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 488999999999999999998832 11 2356799999999999999999999999999996 45777766667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043077 114 EILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~ 132 (150)
.+++.+...++.++..++.
T Consensus 85 ~l~~~l~~~~d~l~~~l~~ 103 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELDK 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888877777776654
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.01 E-value=9.9e-10 Score=81.30 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHH
Q 043077 42 VTEVINLFTRDAENAITQARDSLQ---EPSVD---YDKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERC 112 (150)
Q Consensus 42 ~~~li~~Fl~d~~~~l~~L~~Al~---~~~~D---~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~ 112 (150)
..+++..|+++++++|..|...+. +++.| ...+.+.+|+|||||+++|...+..+|-.+|.. .+.|...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468899999999999999999873 33334 457899999999999999999999999999986 466655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043077 113 NEILQRIVEEYQTLHVNLAHILN 135 (150)
Q Consensus 113 ~~~l~~l~~ef~~~~~~L~~~l~ 135 (150)
..+++.+-..++.++..++.+-.
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777776666665543
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.67 E-value=3.5e-08 Score=77.43 Aligned_cols=90 Identities=13% Similarity=0.252 Sum_probs=66.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc---CCCCCH---HHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHH
Q 043077 43 TEVINLFTRDAENAITQARDSLQ---EPSVDY---DKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCN 113 (150)
Q Consensus 43 ~~li~~Fl~d~~~~l~~L~~Al~---~~~~D~---~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~ 113 (150)
.+++..|++++.++|..|+..+- +++.|. ..+.|.+|+|||||+.+|...+..+|-.+|.. .|+|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 36789999999999999999863 343443 57789999999999999999999999999976 4566433334
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043077 114 EILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 114 ~~l~~l~~ef~~~~~~L~~ 132 (150)
.+++.+-..++.++..+..
T Consensus 86 ~~~~ll~~~~D~l~~~l~~ 104 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQLDA 104 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 16
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=80.75 E-value=4.1 Score=30.53 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhcccc
Q 043077 8 QELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENA-ITQARDSLQEPSVDYDKLIAAVHQLRGASS 86 (150)
Q Consensus 8 ~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~-l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa 86 (150)
..+.+++.++|.+.=....+..++.+ +|+|= ...|++.+... +..|..|..++ |.+.|+.+
T Consensus 23 ~~~~~~~~~~f~~s~~~~~l~~i~~~----dp~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~--------- 84 (194)
T 2cw9_A 23 DKVTDLLGGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDW--------- 84 (194)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH---------
T ss_pred hhhhhhhccccCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHh---------
Confidence 34445555666655555556677766 45664 58899999998 79999999986 89999988
Q ss_pred ccCHHHHHHHHHHHHHhhhhc
Q 043077 87 SIGGCRVALACRELRSAIDDK 107 (150)
Q Consensus 87 ~iGA~~l~~~c~~lE~~~~~~ 107 (150)
+.-.-...++..+......|
T Consensus 85 -~t~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 85 -CYEATYSQLAHPIQQAKALG 104 (194)
T ss_dssp -BCHHHHHHHHHHHHHHHHTT
T ss_pred -cCHHHHHHHHHHHHHHHHCC
Confidence 55566666777777665554
No 17
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=68.78 E-value=35 Score=29.52 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=64.1
Q ss_pred HHHHhhhhccCCchHHHHHHHHHHHh--HHHHHHHHH-HHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHh
Q 043077 27 FDTLSRIQNDQSPLFVTEVINLFTRD--AENAITQAR-DSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSA 103 (150)
Q Consensus 27 ~~~L~~L~~~~~~df~~~li~~Fl~d--~~~~l~~L~-~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~ 103 (150)
|...+.+- ++++|+..|++ |=.| +++.+..|+ ..+.+.+-+++.+++ +|.-|..|..++..+..+
T Consensus 108 W~~ak~~L--~~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~---------~S~Aa~~Lc~WV~A~~~Y 175 (536)
T 3err_A 108 WKQIRSII--MRENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVNR---------ASLAAGPMVKWAIAQLNY 175 (536)
T ss_dssp HHHHTTGG--GCTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH---------HCTTHHHHHHHHHHHHHH
T ss_pred HHHHhhcc--CcHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHHH---------HHHHHHHHHHHHHhcchh
Confidence 44555443 34678877775 5333 567788887 577766566666653 345667788888888877
Q ss_pred hhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 104 IDDK-DKERCNEILQRIVEEYQTLHVNLAHILN 135 (150)
Q Consensus 104 ~~~~-~~~~~~~~l~~l~~ef~~~~~~L~~~l~ 135 (150)
..-- ........+..++.+...+...|+..+.
T Consensus 176 ~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll 208 (536)
T 3err_A 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALLL 208 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 4556677788888888888888776544
No 18
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.13 E-value=6 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=35.3
Q ss_pred cchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHH
Q 043077 22 ILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARD 62 (150)
Q Consensus 22 ~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~ 62 (150)
.++..+.+++.|-.+-+..|+..++..|=.+.++.+..|=+
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35556889999999999999999999999999999887643
No 19
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=62.78 E-value=26 Score=24.39 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-----------cccccCHHHHHHHHHHHHH----hhhhcCHH
Q 043077 46 INLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRG-----------ASSSIGGCRVALACRELRS----AIDDKDKE 110 (150)
Q Consensus 46 i~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKG-----------SSa~iGA~~l~~~c~~lE~----~~~~~~~~ 110 (150)
-..|.+|+-..+..|+.+++.+ .|-...++....+|- ....-|-.....+-..|.. +...|+.+
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~P 91 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLP-QDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARP 91 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 4568999999999999999853 243344444444432 2223333333333333333 33445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043077 111 RCNEILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 111 ~~~~~l~~l~~ef~~~~~~L~~ 132 (150)
--..+.++|..||.++..+|.+
T Consensus 92 lPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 92 IPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 4467889999999999988764
No 20
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=57.32 E-value=9.4 Score=29.46 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhc
Q 043077 38 SPLFVTEVINLFTRDAENA-ITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDK 107 (150)
Q Consensus 38 ~~df~~~li~~Fl~d~~~~-l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~ 107 (150)
+|.|- ...|++++... +..|-.|...+ |.+.|+.+ ++-.-....+..+....+.|
T Consensus 72 DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~l----------lse~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 72 DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKW----------FSEAPFNVYAAQQKIFKEQD 127 (222)
T ss_dssp ---CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------BCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhh----------cCHHHHHHHHHHHHHHHHCC
Confidence 56675 57889888888 56789998876 89999988 55555666666666665554
No 21
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=51.65 E-value=57 Score=22.56 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-----------ccccccCHHHHHHHHHHHHHh----hhhcCHHH
Q 043077 47 NLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLR-----------GASSSIGGCRVALACRELRSA----IDDKDKER 111 (150)
Q Consensus 47 ~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK-----------GSSa~iGA~~l~~~c~~lE~~----~~~~~~~~ 111 (150)
..|.+|+-..+..|+.+++.+. |-+...+....+| +....-|-.....+-..|... ...|+.+-
T Consensus 10 ~~Y~~dT~~Vv~~lr~~l~l~~-d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~Pl 88 (113)
T 2y6x_A 10 GNFREDTLALISSLREAIALPE-NDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRPL 88 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCT-TCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4688999999999999987532 3233333333333 222333333333333334332 34454444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043077 112 CNEILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 112 ~~~~l~~l~~ef~~~~~~L~~ 132 (150)
-..+.++|..||.++..+|.+
T Consensus 89 Pek~k~Rl~~el~~AE~al~R 109 (113)
T 2y6x_A 89 PEKLKARLEQEFKQVELALDR 109 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999988765
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=51.14 E-value=32 Score=19.47 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=16.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhc
Q 043077 60 ARDSLQEPSVDYDKLIAAVHQLRG 83 (150)
Q Consensus 60 L~~Al~~~~~D~~~l~~~aH~LKG 83 (150)
|.-|-.. +||+.++.+=|.||+
T Consensus 17 iyvA~se--Gd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 17 MDAAASK--GDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHTT--SCHHHHHHHHHHHTT
T ss_pred HHHHHhc--CCHHHHHHHHHHHHh
Confidence 3444444 489999999999986
No 23
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=48.44 E-value=1.6e+02 Score=26.90 Aligned_cols=125 Identities=10% Similarity=0.128 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHH-hhhc----------cchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHH
Q 043077 4 TSLQQELNNFVRSL-REQG----------ILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYD 72 (150)
Q Consensus 4 ~~l~~~~~~~~~~~-~d~g----------~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~ 72 (150)
.++++.|..++... -+.| .++.-...++.|...-..-.+..+.+.|++....+ ..|..|...+ |-+
T Consensus 257 ~~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k~~dL~r~L~~AvvdqvsD~F~dt~~pL-~~Li~Aa~~g--~ee 333 (832)
T 4igg_A 257 NAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPL-LVLIEAAKNG--NEK 333 (832)
T ss_dssp HHHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSHHH-HHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHcC--cHH
Confidence 35677777777632 2223 23332334444544344567777888887654444 4566665554 455
Q ss_pred HHHHHH--------------HHhhcccccc-CHHHHHHHHHHHHHhhhh-----------cCHHHHHHHHHHHHHHHHHH
Q 043077 73 KLIAAV--------------HQLRGASSSI-GGCRVALACRELRSAIDD-----------KDKERCNEILQRIVEEYQTL 126 (150)
Q Consensus 73 ~l~~~a--------------H~LKGSSa~i-GA~~l~~~c~~lE~~~~~-----------~~~~~~~~~l~~l~~ef~~~ 126 (150)
.+...+ |-+-+.|.|= |...+...|.++|..++. -+...+.+-|+.+.++|...
T Consensus 334 ~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~ 413 (832)
T 4igg_A 334 EVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQ 413 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 554444 3333444442 455667777777775541 12344556666666666554
Q ss_pred HHHHH
Q 043077 127 HVNLA 131 (150)
Q Consensus 127 ~~~L~ 131 (150)
...|.
T Consensus 414 v~~L~ 418 (832)
T 4igg_A 414 VRVLT 418 (832)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 24
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=47.16 E-value=30 Score=22.24 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhc
Q 043077 7 QQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65 (150)
Q Consensus 7 ~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~ 65 (150)
+.+|..|++.+--...+|. .-.+++.++.+.|++++-..--.+.+-=.
T Consensus 8 k~~L~~Lv~~idp~~~ld~-----------~vee~ll~lADdFV~~V~~~ac~lAKhR~ 55 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLDE-----------DVEEMLLQIADDFIESVVTAACQLARHRK 55 (76)
T ss_dssp HHHHHHHHHHHCSSCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777754444554 23467888899999988877666655433
No 25
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=41.00 E-value=33 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=29.3
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHH
Q 043077 26 NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARD 62 (150)
Q Consensus 26 ~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~ 62 (150)
+|.+++++-. .+|+.+..++...-..-|.++..|.+
T Consensus 12 qf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 12 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 6889998876 58999999998888888888776654
No 26
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.10 E-value=1e+02 Score=22.15 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHHHhhhccchhHHHHHhhhhc-cCCchHHHHHHHHHH
Q 043077 2 VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQN-DQSPLFVTEVINLFT 50 (150)
Q Consensus 2 ~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~-~~~~df~~~li~~Fl 50 (150)
.-..++.+...+++-.|..|-+++....+++|.. .-.|.||..+|+.-+
T Consensus 5 s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~al 54 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLAL 54 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 4467888999999999999999998888888853 223445555554433
No 27
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=39.58 E-value=59 Score=22.45 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 043077 5 SLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGA 84 (150)
Q Consensus 5 ~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGS 84 (150)
.|...+.+-++-||.+|+--+. |+ -.+..+++.|+.-..+..-++..|.. -...+| -|-+||.
T Consensus 57 elekeiadkvkimfaqgyhiev---lq--------lilekildsfisvireqyhdlqaaas----yittvr--dhifkgt 119 (146)
T 3zta_A 57 ELEKEIADKVKIMFAQGYHIEV---LQ--------LILEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKGT 119 (146)
T ss_dssp HHHHHHHHHHHHHHHHTCCTHH---HH--------HHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHH---HH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcch
Confidence 4556667777788888874432 11 13456677777665555555554432 122333 3889988
Q ss_pred cc
Q 043077 85 SS 86 (150)
Q Consensus 85 Sa 86 (150)
|-
T Consensus 120 sf 121 (146)
T 3zta_A 120 SF 121 (146)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 28
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=38.66 E-value=28 Score=23.49 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 043077 90 GCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVN 129 (150)
Q Consensus 90 A~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~ 129 (150)
...+..++..|+.+...++.+.+..+|..|+. +.-+...
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~-~~iT~e~ 49 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS-CQMSIQL 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT-SCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-CCCCHHH
Confidence 56888888999988777777777777777743 3333333
No 29
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.08 E-value=87 Score=21.45 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHH
Q 043077 3 GTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINL 48 (150)
Q Consensus 3 ~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~ 48 (150)
.+.++.+...+++-.+..|=+++...-+++|. -|.|..++|..
T Consensus 3 ~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~---~p~f~~e~V~~ 45 (129)
T 2nsz_A 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYE 45 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC---CCccHHHHHHH
Confidence 35688899999999999999999888888884 45666555554
No 30
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=38.02 E-value=1.1e+02 Score=21.96 Aligned_cols=78 Identities=9% Similarity=0.163 Sum_probs=32.2
Q ss_pred HhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhhccccccCHHH
Q 043077 17 LREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE----PSVDYDKLIAAVHQLRGASSSIGGCR 92 (150)
Q Consensus 17 ~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~----~~~D~~~l~~~aH~LKGSSa~iGA~~ 92 (150)
+.++..+...+.++..+-++.+..-...++..|+++-.+.+..++..+.. ++.-|..=..++-..+++++.-||+.
T Consensus 96 l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~~~~~~~~~~~~~~ 175 (189)
T 3oj5_A 96 LDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAPH 175 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHHhhCCCCCCCCCCc
Confidence 33344444444455555444344444566777887777777766666542 00011112234455566566666665
Q ss_pred HH
Q 043077 93 VA 94 (150)
Q Consensus 93 l~ 94 (150)
.+
T Consensus 176 ~~ 177 (189)
T 3oj5_A 176 AA 177 (189)
T ss_dssp --
T ss_pred cc
Confidence 54
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=37.28 E-value=1.2e+02 Score=22.23 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 71 YDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHI 133 (150)
Q Consensus 71 ~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~ 133 (150)
-..+..+...++ .++..+...|+.+-..++++.+...+.+|+= |..+...+..|
T Consensus 120 ~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik~w 173 (181)
T 3uo3_A 120 EAGVKLLEKQNK--------ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFKDW 173 (181)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHTC
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 344555555543 6788888888888888999999998888875 66777776655
No 32
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=36.53 E-value=11 Score=19.44 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHhh
Q 043077 3 GTSLQQELNNFVRSLRE 19 (150)
Q Consensus 3 ~~~l~~~~~~~~~~~~d 19 (150)
++.||+||.+++..+-.
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46789999998887654
No 33
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.85 E-value=1e+02 Score=21.85 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHH
Q 043077 3 GTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINL 48 (150)
Q Consensus 3 ~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~ 48 (150)
.+.++.+...+++-.+..|-+++...-+++|. -|.|..++|..
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~---~p~f~~e~V~~ 47 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYE 47 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT---CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CCcchHHHHHH
Confidence 45688899999999999999999888888884 45665555554
No 34
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=34.40 E-value=86 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 94 ALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAH 132 (150)
Q Consensus 94 ~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~ 132 (150)
.++...|..+-..++++.+...+.+++= |.++...++.
T Consensus 165 ~~~~~~l~~~~~~~d~~~A~~~v~kL~y-~~kl~~~i~~ 202 (207)
T 3bvo_A 165 KEFTDNVSSAFEQDDFEEAKEILTKMRY-FSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444444444457888888888877776 5556555554
No 35
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=32.26 E-value=1.8e+02 Score=24.00 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHH
Q 043077 46 INLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRV 93 (150)
Q Consensus 46 i~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l 93 (150)
|+.=+++..+...+|...+.+++.|...|.......=+++.|=|-...
T Consensus 307 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~LqG~v~~~Vn~G~~~y 354 (428)
T 2wm9_A 307 IEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAY 354 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHSCSSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccCccCCcHHHH
Confidence 556667777777777777776667777776666655555666555544
No 36
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=28.45 E-value=1.1e+02 Score=18.93 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhh--hhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 043077 69 VDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAI--DDK-DKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQ 144 (150)
Q Consensus 69 ~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~--~~~-~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~ 144 (150)
+|++.|+..|-.+++.+..|-. .+..+...+.... =.| ..+.....+.++...+..+...|..+-...+++....
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y 83 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAV 83 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888887776643 3444444444432 122 2445566777777777777777777766666665443
No 37
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=28.37 E-value=59 Score=16.93 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhh
Q 043077 117 QRIVEEYQTLHVNLAHILNLGRQI 140 (150)
Q Consensus 117 ~~l~~ef~~~~~~L~~~l~~~~q~ 140 (150)
+.|+.|..+.+.....+++...++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888877777655443
No 38
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=28.25 E-value=1.7e+02 Score=21.08 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 043077 38 SPLFVTEVINLFTRDAENAITQARDSLQEPSVD-YDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEIL 116 (150)
Q Consensus 38 ~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D-~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l 116 (150)
+|+|+.+++.. =+.|..+-... | -.++..+...++ .++..+...|+.+-..++++.+...+
T Consensus 91 d~~fLme~me~--------rE~le~~~~~~--d~~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~ 152 (174)
T 3hho_A 91 DPMFLMEQMEL--------REELESVTACA--DPEAALVAFDTKVT--------AMQRHYLAQLQGQLAQSEWLAAADQI 152 (174)
T ss_dssp CHHHHHHHHHH--------HHHHHHHTSSS--SHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHH--------HHHHHHHhhcc--chHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46777666543 23344443332 5 456666666665 46777888888888889999988777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043077 117 QRIVEEYQTLHVNLAHI 133 (150)
Q Consensus 117 ~~l~~ef~~~~~~L~~~ 133 (150)
.+|+= |.++...+++.
T Consensus 153 ~kL~f-~~kl~~~i~~~ 168 (174)
T 3hho_A 153 RKLKF-IAKLKNEVERV 168 (174)
T ss_dssp HHHHH-HHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHH
Confidence 77654 55555555543
No 39
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.13 E-value=90 Score=19.79 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 043077 10 LNNFVRSLREQGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE 66 (150)
Q Consensus 10 ~~~~~~~~~d~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~ 66 (150)
...++..|...|+|+.. .+.++.- ....+=+..|++.-..-++.-...+..++.+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 44566667777777764 5555542 2334555566666555566666666666643
No 40
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=28.01 E-value=1.6e+02 Score=20.81 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=46.3
Q ss_pred HhHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhccc--------ccc------C----HHHHHHHHHHHHHhhhhcCHHH
Q 043077 51 RDAENAITQ-ARDSLQEPSVDYDKLIAAVHQLRGAS--------SSI------G----GCRVALACRELRSAIDDKDKER 111 (150)
Q Consensus 51 ~d~~~~l~~-L~~Al~~~~~D~~~l~~~aH~LKGSS--------a~i------G----A~~l~~~c~~lE~~~~~~~~~~ 111 (150)
.++.+++.+ |...|+.+ ||...|...|.-=|.- .|+ - |..|.+--.+|..+++.+|...
T Consensus 33 ~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~ 110 (133)
T 3ls0_A 33 AVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGSQ 110 (133)
T ss_dssp HHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 456777888 88888865 7888888877433221 111 0 1222333334445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 043077 112 CNEILQRIVEEYQTLHVNLAHILNLGRQ 139 (150)
Q Consensus 112 ~~~~l~~l~~ef~~~~~~L~~~l~~~~q 139 (150)
....|..+...+..|+++-++
T Consensus 111 -------a~k~Y~~a~adfdafl~liP~ 131 (133)
T 3ls0_A 111 -------AKIQYQEALADFDSFLNLLPQ 131 (133)
T ss_dssp -------HHHHHHHHHHHHHHHHHHCC-
T ss_pred -------HHHHHHHHHHHHHHHHHhcCC
Confidence 345677777777777776543
No 41
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=27.99 E-value=27 Score=22.26 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=27.5
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHH
Q 043077 26 NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQAR 61 (150)
Q Consensus 26 ~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~ 61 (150)
+|.+|+++-. .+|+.+..|+...-..-|+++..|.
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 5888888876 5899998888887777787776554
No 42
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=27.80 E-value=28 Score=26.55 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=15.7
Q ss_pred cccCHHHHHHHHHHHHH
Q 043077 86 SSIGGCRVALACRELRS 102 (150)
Q Consensus 86 a~iGA~~l~~~c~~lE~ 102 (150)
|.+||..+.++|..|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56999999999999987
No 43
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=27.34 E-value=41 Score=25.88 Aligned_cols=18 Identities=11% Similarity=0.442 Sum_probs=15.7
Q ss_pred cccCHHHHHHHHHHHHHh
Q 043077 86 SSIGGCRVALACRELRSA 103 (150)
Q Consensus 86 a~iGA~~l~~~c~~lE~~ 103 (150)
|.+||..+.++|..||..
T Consensus 168 A~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 168 ATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 459999999999999864
No 44
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=26.90 E-value=73 Score=22.63 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHh--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHh
Q 043077 26 NFDTLSRIQNDQSPLFVTEVINLFTRD--AENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSA 103 (150)
Q Consensus 26 ~~~~L~~L~~~~~~df~~~li~~Fl~d--~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~ 103 (150)
.|...+.+- ++++|+..|++ |=.| +++.+..|+..+.+.+.+++.+++. |..|..|...+..+..+
T Consensus 71 ~W~~~k~~l--~~~~Fl~~L~~-fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~---------S~Aa~~Lc~WV~A~~~y 138 (155)
T 2rr7_A 71 YWEASKKML--MEFDFLDSLRK-FDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQ---------SVACAGLCSWVIALEKY 138 (155)
T ss_dssp HHHHHHHHH--SCSSHHHHHHH-SCGGGCCHHHHTTSTTTSSCTTSSHHHHHHH---------CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHh--chHHHHHHHHh-cCcccChHHHHHHHHHHhcCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 466666665 45689988876 5322 4677888888888766666776644 44566677777666655
Q ss_pred h
Q 043077 104 I 104 (150)
Q Consensus 104 ~ 104 (150)
.
T Consensus 139 ~ 139 (155)
T 2rr7_A 139 D 139 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=26.40 E-value=2.4e+02 Score=22.18 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q 043077 46 INLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQT 125 (150)
Q Consensus 46 i~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~ 125 (150)
|+.=+++......+|..++.+.+.|...|....+..=++..|=|-...+..--. . ...+.+ ....+.+|+..|..
T Consensus 167 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~L~G~Vd~~VngG~~~y~~~Fl~--~--~~~~~~-~~~~v~~Lk~~~~~ 241 (288)
T 3vhl_A 167 IEVAIEDMKKKTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLA--E--IPADPK-LYRHHNKLRLCFKE 241 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCCSSSCCHHHHHHHHTS--S--CCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHhhheEeccccccCHHHHHHHHcC--C--cccChh-hHHHHHHHHHHHHH
Confidence 444456666666677777766556777776666655556667665555332211 0 011211 23455566666666
Q ss_pred HHHHHHHHHHhchhhhh
Q 043077 126 LHVNLAHILNLGRQILA 142 (150)
Q Consensus 126 ~~~~L~~~l~~~~q~~~ 142 (150)
....|..-+.++++..+
T Consensus 242 ~~~~l~~~L~lh~~li~ 258 (288)
T 3vhl_A 242 FIMRCGEAVEKNRRLIT 258 (288)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 66666666665555443
No 46
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=25.07 E-value=1.9e+02 Score=20.77 Aligned_cols=130 Identities=8% Similarity=0.149 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHHHHHhhhccchhH-HHHHhhhhcc-CCchHHHHHHHHHHHhHHHHHHHHHHHhcC-CCC-----CHH
Q 043077 1 MVGTSLQQELNNFVRSLREQGILDHN-FDTLSRIQND-QSPLFVTEVINLFTRDAENAITQARDSLQE-PSV-----DYD 72 (150)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~d~g~lD~~-~~~L~~L~~~-~~~df~~~li~~Fl~d~~~~l~~L~~Al~~-~~~-----D~~ 72 (150)
|....|+.-+ +..|-|-=..+.+ ..-|..+... .+|++ ...+..+++++..++..|++.+.. -.. ..+
T Consensus 1 m~~~~l~dlf---~~~L~D~y~aE~q~~~al~~~~~~a~~p~L-k~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~ 76 (166)
T 2gs4_A 1 MNMKTIEDVF---IHLLSDTYSAEKQLTRALAKLARATSNEKL-SQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCV 76 (166)
T ss_dssp --CCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCH
T ss_pred CCcCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Confidence 4445555433 3333333334444 5566666553 34554 688999999999999999998865 111 113
Q ss_pred HHHHHHHHhhccccccCHHHHHHHHH-----HHHHhh--hhc---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077 73 KLIAAVHQLRGASSSIGGCRVALACR-----ELRSAI--DDK---------DKERCNEILQRIVEEYQTLHVNLAHIL 134 (150)
Q Consensus 73 ~l~~~aH~LKGSSa~iGA~~l~~~c~-----~lE~~~--~~~---------~~~~~~~~l~~l~~ef~~~~~~L~~~l 134 (150)
.+..+.=.-+.-...++-..+.+.+. .+|++- ..| ..+.+..+|++.-.|=.....+|....
T Consensus 77 am~gli~e~~~~~~~~~~~~vlda~li~aaq~~EhyEIA~YgtL~a~A~~lG~~~~~~lL~~~L~EE~~~d~~L~~la 154 (166)
T 2gs4_A 77 AMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLA 154 (166)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333233333344444444433 566542 222 233355666666666666666666654
No 47
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=24.53 E-value=1.3e+02 Score=18.51 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhh--c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 043077 69 VDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDD--K-DKERCNEILQRIVEEYQTLHVNLAHILNLGRQILA 142 (150)
Q Consensus 69 ~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~--~-~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~ 142 (150)
+|++.|+..|-.+++.+.+|-. .+..+...+...... | ..+.....+..+...+.++...|..+-+..++++.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~ 84 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQS-QINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIAD 84 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877754 456666666666421 1 12233455555555666666666665555555443
No 48
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.27 E-value=87 Score=24.93 Aligned_cols=51 Identities=6% Similarity=0.089 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHHhhhccchhHHHHHhhhhcc-CCchHHHHHHHHHHHh
Q 043077 2 VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQND-QSPLFVTEVINLFTRD 52 (150)
Q Consensus 2 ~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~-~~~df~~~li~~Fl~d 52 (150)
....++.+..++++-.+..|=+++...-+++|..+ --++||..+|...++-
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 34568889999999999999999888888888543 2345666666666654
No 49
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=23.83 E-value=73 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 043077 54 ENAITQARDSLQEPSVDYDKLIAAVHQLRG 83 (150)
Q Consensus 54 ~~~l~~L~~Al~~~~~D~~~l~~~aH~LKG 83 (150)
.+++.+|..|++.+ |-+++.+++..||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999986 89999999998874
No 50
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=23.11 E-value=1.4e+02 Score=18.43 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhh--c-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 043077 69 VDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDD--K-DKERCNEILQRIVEEYQTLHVNLAHILNLGRQILA 142 (150)
Q Consensus 69 ~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~--~-~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~ 142 (150)
+|++.|+..|-.++..+.+|-. .+..+...+...... | ..+.....+.++...+.++...|..+-+..+++..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~-~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~ 84 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTE-LIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSAT 84 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766655532 233333344433211 1 12333455555566666666666655555554443
No 51
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.23 E-value=1.9e+02 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.8
Q ss_pred CchhHHHHHHHHHHHHHhhhccchhH
Q 043077 1 MVGTSLQQELNNFVRSLREQGILDHN 26 (150)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~d~g~lD~~ 26 (150)
|....|..+|...++++...+.||+.
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~ 26 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEA 26 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 78899999999999999999999884
No 52
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.73 E-value=2.3e+02 Score=22.40 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.1
Q ss_pred CchhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHH
Q 043077 1 MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLF 49 (150)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~F 49 (150)
|....++.+..++++-.+.-|-+++...-+++|. -|.|..++|...
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~---~p~f~~e~V~~a 205 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE---VPHFHHELVYEA 205 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC---CGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC---CCcchHHHHHHH
Confidence 3456788999999999999999999888888884 456665555543
No 53
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.25 E-value=1.3e+02 Score=17.08 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 043077 110 ERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQR 145 (150)
Q Consensus 110 ~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~~ 145 (150)
+...+-++++-.|++.+...+..+-...++.-.+..
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677888899999999999988877777665543
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=20.17 E-value=87 Score=23.12 Aligned_cols=37 Identities=5% Similarity=0.101 Sum_probs=27.4
Q ss_pred hHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHH
Q 043077 25 HNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARD 62 (150)
Q Consensus 25 ~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~ 62 (150)
.+|.+++.+-. .+|..+..|+...-..-|.++..|.+
T Consensus 33 Pqf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 33 EDLLSLRQVVS-GNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 36888888766 58888888888777777777766543
Done!