BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043079
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 175/320 (54%), Gaps = 21/320 (6%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
IGV YG + NNLP + V L S IN +R++ AD + + A ++GI + + + NDQ+
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQ-LYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQL 59
Query: 91 PYLT-KLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALV 149
+ + A W++NN++PY PA NI I GNE+ A++ S++PAM+ L+ AL
Sbjct: 60 ANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALS 115
Query: 150 GVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYPF 209
+ I+VST F Y V + L +T +P L N YP+
Sbjct: 116 -AAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDVAR----LLASTGAPLLANVYPY 170
Query: 210 FGCSPE----TLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265
F +L+YA F+P + V D+N + YT++ D +DAV++A++ G V++V++
Sbjct: 171 FAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVS 230
Query: 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325
E+GWPS G + +A YN L+ HV G GTP ETYIFA+FNE+ K G
Sbjct: 231 ESGWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTG 284
Query: 326 PTCERNFGLFHPNMTPVYDV 345
ER+FGLF+P+ +P Y++
Sbjct: 285 DATERSFGLFNPDKSPAYNI 304
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 178/320 (55%), Gaps = 15/320 (4%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
IGV YG + NNLPPP+ V L +S I R+RL+D + ++A ++ I V + VP +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVS-LYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDV 59
Query: 91 PYL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALV 149
L + + A W++ N+ Y P+ + I VGNE++ + L ++PAM+ ++ AL
Sbjct: 60 QSLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALS 117
Query: 150 GVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYPF 209
L +I+VST F + L P++ FL + +P L+N YP+
Sbjct: 118 SAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAY-LSPIVQFLASNGAPLLVNVYPY 176
Query: 210 FGCSPE----TLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265
F + +L YALF SGV ++ + Y N+ D +DAVF+A++ +G +V +V++
Sbjct: 177 FSYTGNPGQISLPYALFTA-SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325
E+GWPS G ++ + +A YN NL+RHV G GTP P + E YIF +FNE+ K G
Sbjct: 236 ESGWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG 291
Query: 326 PTCERNFGLFHPNMTPVYDV 345
E+NFGLF+PN PVY +
Sbjct: 292 -GIEQNFGLFYPNKQPVYQI 310
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 160/320 (50%), Gaps = 15/320 (4%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
IGV YG +ANNLP V L + I ++R++ + A + I + + VPN +
Sbjct: 3 IGVCYGKIANNLPSDQDVIK-LYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL 61
Query: 91 PYLTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLV-PAMQTLHTALV 149
L + A W+++NI+ + P I VGNE+ A V PAM+ ++ AL
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 150 GVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYPF 209
L +I+VST F + Y + P++ FL P L N YP+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYK-SFINPIIGFLARHNLPLLANIYPY 180
Query: 210 FGCSPET----LDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265
FG T L YALF Y N+ D +D+++ A + LG ++EI+++
Sbjct: 181 FGHIDNTNAVPLSYALFNQ-----QRRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325
E+GWPS+G + ++A Y NL+ HV G GTP P +T ETY+FA+F+E+ K+G
Sbjct: 236 ESGWPSEGHPAAT---LKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 326 PTCERNFGLFHPNMTPVYDV 345
E++FGLF+P+ P Y +
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 173/322 (53%), Gaps = 17/322 (5%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
+GV YG NNLPP + V L + + I R+R++D + ++ A + I + + VPN +
Sbjct: 2 VGVCYGMQGNNLPPVSEVIA-LYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDL 60
Query: 91 PYLTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEI--LSTASKLLIASLVPAMQTLHTAL 148
LT + A+ W++ N++ + + I VGNEI ++ + L ++PAM+ +H A+
Sbjct: 61 QSLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 149 VGVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYP 208
L +I+VST F + L P++ FL + +SP L N YP
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSY-LNPIIRFLSSIRSPLLANIYP 179
Query: 209 FF--GCSPE--TLDYALF-RPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIV 263
+F +P +L YALF P+ V+D Y N+ D LDA++SA++ +E+V
Sbjct: 180 YFTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVV 237
Query: 264 IAETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLK 323
++E+GWPS G + + ++ Y NL++HV GTP P R ETY+FA+F+E+ K
Sbjct: 238 VSESGWPSAGAFAATFDNGRT---YLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKK 292
Query: 324 QGPTCERNFGLFHPNMTPVYDV 345
Q P E++FGLF PN Y++
Sbjct: 293 Q-PEVEKHFGLFFPNKWQKYNL 313
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 159/320 (49%), Gaps = 15/320 (4%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
IGV YG +ANNLP V L + I ++R++ + A + I + + VPN +
Sbjct: 3 IGVCYGKIANNLPSDQDVIK-LYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL 61
Query: 91 PYLTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLV-PAMQTLHTALV 149
L + A W+++NI+ + P I VGNE+ A V PAM+ ++ AL
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 150 GVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYPF 209
L +I+VST F + Y + P++ FL P L N YP+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYK-SFINPIIGFLARHNLPLLANIYPY 180
Query: 210 FGCSPET----LDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265
FG T L YALF Y N+ D +D+++ A + LG ++EI+++
Sbjct: 181 FGHIDNTNAVPLSYALFNQ-----QRRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325
+GWPS+G + ++A Y NL+ HV G GTP P +T ETY+FA+F+E+ K+G
Sbjct: 236 ASGWPSEGHPAAT---LKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 326 PTCERNFGLFHPNMTPVYDV 345
E++FGLF+P+ P Y +
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 167/320 (52%), Gaps = 21/320 (6%)
Query: 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQI 90
IGV YG ANNLP + V + +S I +RL+ + ++A TGI V V PND +
Sbjct: 1 IGVCYGMSANNLPAASTVVS-MFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVL 59
Query: 91 PYLTKLNFAEQ-WLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALV 149
L A W+K+NIQ Y P + + VGNE+ A++ +LVPAM+ +H ALV
Sbjct: 60 SNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALV 114
Query: 150 GVSLDRRIQVSTPHXXXXXXXXXXXXXXKFHQGYDIHVLKPLLSFLRATKSPFLINPYPF 209
L I+V+T F G + P++ FL T +P + N YP+
Sbjct: 115 AAGLGH-IKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPY 172
Query: 210 FGCS--PETLD--YALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265
+ P +D YALF SG + Y N+ D +DA ++AM G V++V++
Sbjct: 173 LAWAYNPSAMDMGYALFNA-SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325
E+GWPS G ++ +++ YN +L+ HV G GTP P ETYIFA+FNE+ K
Sbjct: 232 ESGWPSGGGTAATPANARF---YNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKD- 284
Query: 326 PTCERNFGLFHPNMTPVYDV 345
E+N+GLF+PNM VY +
Sbjct: 285 SGVEQNWGLFYPNMQHVYPI 304
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 8/103 (7%)
Query: 358 TSNPTPKVETPQRAPEGKRWCVPKTGADIEALQRNIDYVCGMGFNCEAIQEGGSCFLPNT 417
T PTPK WCVPK G + L NI+Y C G +C IQ GG+CF PNT
Sbjct: 2 TPTPTPKAA--------GSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNT 53
Query: 418 VRAHAAYAMNVYYQAMGRHDYACDFIQTGAVTDLDPSYGKCKY 460
V+AHAAY MN+YYQ GR+ + CDF QT +T+ +PSYG C +
Sbjct: 54 VKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 416 NTVRAHAAYAMNVYYQAMGRHDYACD 441
NTV A A Y + + Y +MG HD A +
Sbjct: 103 NTVYADAYYKLGLVYDSMGEHDKAIE 128
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 129 ASKLLIASLVPAMQTLHTALVGVSLD 154
A++ +A L+PA+Q LH AL +LD
Sbjct: 151 ATEAAVAHLIPALQQLHDALAAKALD 176
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 129 ASKLLIASLVPAMQTLHTALVGVSLD 154
A++ +A L+PA+Q LH AL +LD
Sbjct: 173 ATEAAVAHLIPALQQLHDALAAKALD 198
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 129 ASKLLIASLVPAMQTLHTALVGVSLD 154
A++ +A L+PA+Q LH AL +LD
Sbjct: 152 ATEAAVAHLIPALQQLHDALAAKALD 177
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 129 ASKLLIASLVPAMQTLHTALVGVSLD 154
A++ +A L+PA+Q LH AL +LD
Sbjct: 151 ATEAAVAHLIPALQQLHDALAAKALD 176
>pdb|3FQG|A Chain A, Crystal Structure Of The S. Pombe Rai1
Length = 360
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 68 PKMIRAFAHTGIAVTVTVPNDQIP--YLTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEI 125
PKM+R + PND P L L A +W+K ++ + P+T + G
Sbjct: 295 PKMLRPYFK---------PNDWTPNRLLVVLEHALEWIKQTVKQHPPSTEFTLSYTG--- 342
Query: 126 LSTASKLLIASLV 138
SKL++ ++
Sbjct: 343 ---GSKLVLRQII 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,295,707
Number of Sequences: 62578
Number of extensions: 539229
Number of successful extensions: 1080
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 17
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)