Query 043079
Match_columns 460
No_of_seqs 278 out of 1641
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.6E-87 9.9E-92 672.6 17.6 305 31-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 4.7E-45 1E-49 350.0 23.9 254 27-339 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 6.4E-29 1.4E-33 205.1 8.5 85 376-460 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2.7E-22 5.9E-27 162.8 6.0 72 376-447 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 98.9 2.1E-07 4.6E-12 95.1 20.4 243 45-342 26-326 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.6 5.8E-07 1.3E-11 90.4 12.7 157 31-210 30-217 (314)
7 COG3867 Arabinogalactan endo-1 98.2 2.5E-05 5.4E-10 77.7 14.4 208 45-298 65-328 (403)
8 PF00150 Cellulase: Cellulase 97.8 0.0012 2.7E-08 64.5 16.6 128 30-160 10-171 (281)
9 PRK10150 beta-D-glucuronidase; 97.7 0.0081 1.8E-07 66.5 22.9 238 49-345 319-585 (604)
10 smart00633 Glyco_10 Glycosyl h 97.4 0.014 3.1E-07 57.5 17.9 78 247-342 170-248 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.7 0.068 1.5E-06 52.4 15.9 168 114-341 64-232 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 91.3 1.6 3.5E-05 43.8 10.4 95 30-125 17-132 (298)
13 cd02875 GH18_chitobiase Chitob 85.2 7.7 0.00017 40.4 10.9 96 57-154 55-151 (358)
14 PF00232 Glyco_hydro_1: Glycos 79.5 1.2 2.7E-05 47.7 2.4 74 257-338 353-430 (455)
15 PRK09936 hypothetical protein; 75.3 54 0.0012 33.4 12.4 78 9-88 2-95 (296)
16 PF02449 Glyco_hydro_42: Beta- 68.9 12 0.00026 38.9 6.6 81 46-127 13-140 (374)
17 COG4782 Uncharacterized protei 66.2 21 0.00046 37.3 7.5 60 237-299 125-187 (377)
18 PF00925 GTP_cyclohydro2: GTP 64.8 8.4 0.00018 35.8 4.0 38 48-86 131-168 (169)
19 TIGR03356 BGL beta-galactosida 61.0 20 0.00044 38.2 6.6 75 257-340 335-414 (427)
20 PRK13511 6-phospho-beta-galact 56.8 39 0.00085 36.5 7.9 75 257-340 365-446 (469)
21 PRK00393 ribA GTP cyclohydrola 55.9 17 0.00037 34.6 4.5 33 49-82 134-166 (197)
22 TIGR00505 ribA GTP cyclohydrol 55.7 18 0.00038 34.3 4.5 33 49-82 131-163 (191)
23 cd04734 OYE_like_3_FMN Old yel 53.3 1.9E+02 0.0042 29.8 12.1 127 171-301 63-206 (343)
24 smart00481 POLIIIAc DNA polyme 53.0 45 0.00098 25.4 5.7 43 43-86 15-62 (67)
25 PLN02998 beta-glucosidase 49.3 37 0.00081 37.1 6.3 75 257-340 390-466 (497)
26 PRK12485 bifunctional 3,4-dihy 47.5 22 0.00047 37.4 4.0 32 49-82 331-362 (369)
27 PLN02814 beta-glucosidase 46.9 47 0.001 36.4 6.6 75 257-340 385-461 (504)
28 PF05990 DUF900: Alpha/beta hy 46.6 90 0.0019 30.4 8.0 59 237-298 27-88 (233)
29 cd00641 GTP_cyclohydro2 GTP cy 45.5 31 0.00067 32.7 4.4 36 49-85 133-168 (193)
30 PRK14019 bifunctional 3,4-dihy 44.5 26 0.00056 36.8 4.0 35 49-85 328-362 (367)
31 PLN02849 beta-glucosidase 41.8 87 0.0019 34.3 7.7 75 257-340 383-461 (503)
32 PRK09314 bifunctional 3,4-dihy 40.2 36 0.00077 35.4 4.2 34 48-82 300-334 (339)
33 PRK09318 bifunctional 3,4-dihy 39.5 40 0.00086 35.7 4.5 37 49-86 320-356 (387)
34 cd04743 NPD_PKS 2-Nitropropane 39.4 2E+02 0.0044 29.7 9.5 80 28-125 55-134 (320)
35 PRK08815 GTP cyclohydrolase; P 39.2 40 0.00087 35.5 4.5 37 49-86 305-341 (375)
36 PF03662 Glyco_hydro_79n: Glyc 38.8 91 0.002 32.2 6.8 81 69-150 112-202 (319)
37 PRK09319 bifunctional 3,4-dihy 38.3 42 0.0009 37.1 4.5 37 49-86 343-379 (555)
38 PRK14582 pgaB outer membrane N 38.1 2.7E+02 0.0058 31.8 10.9 39 280-325 578-616 (671)
39 cd02874 GH18_CFLE_spore_hydrol 38.0 72 0.0016 32.1 6.0 83 67-153 47-138 (313)
40 PRK09311 bifunctional 3,4-dihy 37.7 43 0.00094 35.6 4.5 37 49-86 339-375 (402)
41 PRK09589 celA 6-phospho-beta-g 37.5 64 0.0014 35.0 5.8 46 45-91 69-134 (476)
42 PLN02831 Bifunctional GTP cycl 37.3 43 0.00093 36.2 4.4 37 49-86 373-409 (450)
43 PF14946 DUF4501: Domain of un 35.6 22 0.00048 33.0 1.6 49 4-52 91-142 (180)
44 PRK09525 lacZ beta-D-galactosi 35.5 3.4E+02 0.0074 32.6 11.8 95 31-126 353-464 (1027)
45 KOG0626 Beta-glucosidase, lact 35.3 81 0.0018 34.6 6.1 75 256-338 404-486 (524)
46 cd02803 OYE_like_FMN_family Ol 34.6 4.7E+02 0.01 26.2 11.4 129 170-301 62-206 (327)
47 TIGR01579 MiaB-like-C MiaB-lik 34.1 5.7E+02 0.012 26.8 12.6 60 133-212 271-330 (414)
48 KOG1412 Aspartate aminotransfe 33.4 1.3E+02 0.0029 31.1 6.9 146 32-198 185-371 (410)
49 COG5016 Pyruvate/oxaloacetate 33.1 70 0.0015 34.2 5.0 42 45-86 96-146 (472)
50 TIGR03632 bact_S11 30S ribosom 33.1 89 0.0019 26.9 4.9 36 47-83 51-91 (108)
51 cd02932 OYE_YqiM_FMN Old yello 32.6 5.4E+02 0.012 26.2 11.5 126 172-301 64-219 (336)
52 cd00598 GH18_chitinase-like Th 32.3 1.2E+02 0.0025 28.2 6.1 84 69-153 53-142 (210)
53 PF00331 Glyco_hydro_10: Glyco 32.2 70 0.0015 32.7 4.9 219 69-342 63-310 (320)
54 PF04909 Amidohydro_2: Amidohy 32.1 59 0.0013 31.0 4.1 89 139-270 85-175 (273)
55 PRK09989 hypothetical protein; 32.0 4.7E+02 0.01 25.2 10.9 120 31-153 4-138 (258)
56 cd02872 GH18_chitolectin_chito 31.6 3.3E+02 0.0072 27.9 9.8 79 72-151 62-150 (362)
57 TIGR01233 lacG 6-phospho-beta- 31.4 1.3E+02 0.0029 32.5 7.1 46 45-91 55-119 (467)
58 PF02055 Glyco_hydro_30: O-Gly 30.9 3.5E+02 0.0075 29.7 10.1 90 72-161 161-278 (496)
59 PRK15014 6-phospho-beta-glucos 30.1 1.2E+02 0.0026 33.0 6.5 74 260-340 369-448 (477)
60 PRK07198 hypothetical protein; 30.1 43 0.00094 35.5 2.9 37 49-86 338-375 (418)
61 cd02871 GH18_chitinase_D-like 30.0 5.9E+02 0.013 25.7 11.3 78 71-149 66-146 (312)
62 PRK12359 flavodoxin FldB; Prov 29.0 4.8E+02 0.01 24.3 10.8 110 31-153 3-113 (172)
63 TIGR03628 arch_S11P archaeal r 28.8 1.1E+02 0.0024 26.8 4.8 37 46-83 53-102 (114)
64 cd06545 GH18_3CO4_chitinase Th 28.8 1.3E+02 0.0028 29.3 6.0 80 69-153 50-133 (253)
65 PF06117 DUF957: Enterobacteri 27.9 96 0.0021 24.4 3.7 43 97-151 11-55 (65)
66 PRK10340 ebgA cryptic beta-D-g 27.9 4.7E+02 0.01 31.4 11.3 96 31-127 337-452 (1021)
67 COG1433 Uncharacterized conser 27.2 1.3E+02 0.0028 26.7 4.9 39 47-86 56-94 (121)
68 COG0807 RibA GTP cyclohydrolas 26.5 1.2E+02 0.0026 29.1 4.9 39 49-88 133-171 (193)
69 PRK09607 rps11p 30S ribosomal 24.5 1.5E+02 0.0032 26.7 4.9 37 46-83 60-109 (132)
70 PLN03059 beta-galactosidase; P 24.4 6.8E+02 0.015 29.4 11.3 152 7-163 5-222 (840)
71 PRK14328 (dimethylallyl)adenos 24.3 6.2E+02 0.013 26.9 10.6 60 133-212 280-339 (439)
72 PRK06552 keto-hydroxyglutarate 23.3 6.7E+02 0.015 24.1 10.7 88 44-149 118-210 (213)
73 PF00411 Ribosomal_S11: Riboso 23.0 1.4E+02 0.0031 25.6 4.4 35 48-83 52-91 (110)
74 PRK09997 hydroxypyruvate isome 22.9 6.9E+02 0.015 24.1 10.4 118 33-153 6-138 (258)
75 PF00834 Ribul_P_3_epim: Ribul 22.7 5.7E+02 0.012 24.4 8.9 99 44-159 68-171 (201)
76 PRK14330 (dimethylallyl)adenos 22.5 8.6E+02 0.019 25.8 11.2 76 117-212 251-332 (434)
77 PF14606 Lipase_GDSL_3: GDSL-l 22.4 5.1E+02 0.011 24.4 8.3 56 241-298 76-133 (178)
78 CHL00041 rps11 ribosomal prote 22.4 1.8E+02 0.0039 25.4 5.0 34 48-82 65-103 (116)
79 cd06150 YjgF_YER057c_UK114_lik 22.4 1.4E+02 0.0031 24.9 4.3 23 132-154 26-48 (105)
80 COG3934 Endo-beta-mannanase [C 22.3 2.5E+02 0.0054 30.8 6.8 186 100-345 123-312 (587)
81 PF14871 GHL6: Hypothetical gl 22.2 2.2E+02 0.0047 25.4 5.6 42 44-86 1-65 (132)
82 PF07172 GRP: Glycine rich pro 21.9 55 0.0012 27.7 1.6 17 6-22 6-22 (95)
83 PRK09593 arb 6-phospho-beta-gl 21.9 2.2E+02 0.0049 30.9 6.7 74 260-340 369-448 (478)
84 PRK13586 1-(5-phosphoribosyl)- 21.7 7.4E+02 0.016 24.1 9.7 70 43-128 30-108 (232)
85 COG3325 ChiA Chitinase [Carboh 21.5 4.7E+02 0.01 28.2 8.6 113 134-265 193-309 (441)
86 PHA02754 hypothetical protein; 21.3 72 0.0016 24.6 1.9 27 136-162 15-42 (67)
87 COG2159 Predicted metal-depend 21.3 3.2E+02 0.007 27.6 7.3 93 140-273 114-208 (293)
88 KOG0078 GTP-binding protein SE 21.0 1.8E+02 0.0038 28.3 5.0 80 27-125 41-127 (207)
89 PLN00196 alpha-amylase; Provis 21.0 3.3E+02 0.0072 29.2 7.6 58 30-88 28-116 (428)
90 PRK13587 1-(5-phosphoribosyl)- 21.0 7.7E+02 0.017 23.9 9.7 70 43-128 31-111 (234)
91 PRK13347 coproporphyrinogen II 20.9 1.1E+02 0.0025 32.7 4.1 21 134-154 262-282 (453)
92 PRK05309 30S ribosomal protein 20.7 2E+02 0.0044 25.6 5.0 34 48-82 69-107 (128)
93 cd06548 GH18_chitinase The GH1 20.1 3.9E+02 0.0083 27.1 7.7 166 71-265 75-258 (322)
94 TIGR03822 AblA_like_2 lysine-2 20.1 5.1E+02 0.011 26.4 8.6 29 58-86 168-205 (321)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.6e-87 Score=672.61 Aligned_cols=305 Identities=50% Similarity=0.905 Sum_probs=249.9
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeCCCCcccc-cCHHHHHHHHHhcccc
Q 043079 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQIPYL-TKLNFAEQWLKNNIQP 109 (460)
Q Consensus 31 ~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~-~~~~~a~~wv~~nv~~ 109 (460)
||||||+.++|+|+|.+|+++| |+++|++||||++|+++|+|+++|||+|++||+|++++++ +++..|..||++||.+
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~-ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~ 79 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLL-KSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLP 79 (310)
T ss_dssp EEEEE---SSS---HHHHHHHH-HHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCT
T ss_pred CeEeccCccCCCCCHHHHHHHH-HhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccc
Confidence 7999999999999999999999 9999999999999999999999999999999999999999 8889999999999999
Q ss_pred CCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhh
Q 043079 110 YTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLK 189 (460)
Q Consensus 110 ~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~ 189 (460)
|+|+++|++|+||||++...... .|||+|+++|++|+++||+++|||+|+++++++.++||||+|.|++++. ++|+
T Consensus 80 ~~~~~~i~~i~VGnEv~~~~~~~---~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~ 155 (310)
T PF00332_consen 80 YLPAVNIRYIAVGNEVLTGTDNA---YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMD 155 (310)
T ss_dssp CTTTSEEEEEEEEES-TCCSGGG---GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHH
T ss_pred cCcccceeeeecccccccCccce---eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhh
Confidence 99999999999999999875322 8999999999999999999999999999999999999999999999987 7899
Q ss_pred hHHHHHhhcCCCccccCCCCCCC----CCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEe
Q 043079 190 PLLSFLRATKSPFLINPYPFFGC----SPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265 (460)
Q Consensus 190 ~~ldfL~~~~sp~~vNiyPyf~~----~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVt 265 (460)
++++||..+++|||+|+||||++ .+++||||+|+++..++|+ +++|+||||+|+|++++||+|+|+++++|+||
T Consensus 156 ~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 156 PLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999988 6899999999998877755 88999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCCCCCCCCcceeccCCCCCeeeee
Q 043079 266 ETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQGPTCERNFGLFHPNMTPVYDV 345 (460)
Q Consensus 266 ETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K~G~~~E~~wGlf~~d~~~ky~l 345 (460)
||||||+|+ .+|+++||+.|++|+++|+. .|||+||+..+++||||||||+||+|+.+|||||||++||+|||+|
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999999 35999999999999999997 6999999999999999999999999977999999999999999999
Q ss_pred ee
Q 043079 346 GI 347 (460)
Q Consensus 346 ~~ 347 (460)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=350.04 Aligned_cols=254 Identities=20% Similarity=0.316 Sum_probs=202.4
Q ss_pred cCCceeEEecCCCCC--CCChHHHHHHHHhcCCCC-EEEEccCCh----HHHHHHHhCCCeEEEeeCCCCcccccCHHHH
Q 043079 27 SEGSIGVNYGTVANN--LPPPTHVAHFLLESTIIN-RVRLFDADP----KMIRAFAHTGIAVTVTVPNDQIPYLTKLNFA 99 (460)
Q Consensus 27 ~~~~~GvnYg~~~~n--~ps~~~vv~ll~k~~~~~-~VRiY~~d~----~vL~A~~~tgi~v~vGv~n~~l~~~~~~~~a 99 (460)
+.+..+|+||++.++ ||+.+++..+|.....++ .||+|..|| +|++|+...|++|+||||..+.. ..+.
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~----~~~~ 117 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDI----HDAV 117 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccch----hhhH
Confidence 445689999999888 899999988873333444 999999887 67889999999999999964321 1222
Q ss_pred HHHHHhccccCCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccc
Q 043079 100 EQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKF 179 (460)
Q Consensus 100 ~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f 179 (460)
+.-+...+++++....|++|+||||+|+|++ .++++|+.+|..||.+|+++|+++ +|+|+++|.++.+.
T Consensus 118 ~~til~ay~~~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~n-------- 186 (305)
T COG5309 118 EKTILSAYLPYNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHhccCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeCC--------
Confidence 3245666888888889999999999999975 479999999999999999999975 68999999888752
Q ss_pred cCCccchhhhhHHHHHhhcCCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCC
Q 043079 180 HQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDD 259 (460)
Q Consensus 180 ~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~ 259 (460)
|.|++..||+ |+|.||||+.+... + +. + .++-.|+..++.+. | .+
T Consensus 187 ------p~l~~~SDfi-------a~N~~aYwd~~~~a-------------~-~~---~-~f~~~q~e~vqsa~---g-~~ 231 (305)
T COG5309 187 ------PELCQASDFI-------AANAHAYWDGQTVA-------------N-AA---G-TFLLEQLERVQSAC---G-TK 231 (305)
T ss_pred ------hHHhhhhhhh-------hcccchhccccchh-------------h-hh---h-HHHHHHHHHHHHhc---C-CC
Confidence 5666767765 89999999983221 1 01 1 24445566665542 2 34
Q ss_pred ceEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCC-CCC-CCCcceeccC
Q 043079 260 VEIVIAETGWPSKGDSSQ-VGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLK-QGP-TCERNFGLFH 336 (460)
Q Consensus 260 ~~vvVtETGWPS~G~~~~-~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K-~G~-~~E~~wGlf~ 336 (460)
++++|+||||||+|..++ +.||++||++|++++++.+++ .++++|+||+|||+|| +|. ++|+|||++.
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeeec
Confidence 999999999999999985 579999999999999998875 3699999999999999 566 8999999998
Q ss_pred CCC
Q 043079 337 PNM 339 (460)
Q Consensus 337 ~d~ 339 (460)
.|+
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 875
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=6.4e-29 Score=205.06 Aligned_cols=85 Identities=56% Similarity=1.046 Sum_probs=82.2
Q ss_pred eeEEecCCCCHHHHHhhhhccccCCCCCccccCCCcccCCCchhhhHhHHHHHHHHHcCCCCCCCCCCcceEEEecCCCC
Q 043079 376 RWCVPKTGADIEALQRNIDYVCGMGFNCEAIQEGGSCFLPNTVRAHAAYAMNVYYQAMGRHDYACDFIQTGAVTDLDPSY 455 (460)
Q Consensus 376 ~~Cv~k~~~~~~~l~~~ld~aCg~~~dC~~I~~~g~C~~p~t~~~~~sya~N~Yyq~~~~~~~aCdF~G~a~~~~~~ps~ 455 (460)
+|||+|+++++++||++|||||+++.||++|++||+||+||++++|||||||+|||++++..++|||+|+|+++++|||.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 49999999999999999999999944999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC
Q 043079 456 GKCKY 460 (460)
Q Consensus 456 ~~C~~ 460 (460)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99987
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.86 E-value=2.7e-22 Score=162.80 Aligned_cols=72 Identities=43% Similarity=0.820 Sum_probs=60.5
Q ss_pred eeEEecCCCCHHHHHhhhhccccCCC-CCccccCCCc-----ccCCCchhhhHhHHHHHHHHHcCCCCCCCCCCcceE
Q 043079 376 RWCVPKTGADIEALQRNIDYVCGMGF-NCEAIQEGGS-----CFLPNTVRAHAAYAMNVYYQAMGRHDYACDFIQTGA 447 (460)
Q Consensus 376 ~~Cv~k~~~~~~~l~~~ld~aCg~~~-dC~~I~~~g~-----C~~p~t~~~~~sya~N~Yyq~~~~~~~aCdF~G~a~ 447 (460)
+|||+++++++++|+++|||||+++. ||++|++||. .|++|+.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 69999999999999999999999944 9999999998 566667899999999999999999999999999997
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.87 E-value=2.1e-07 Score=95.13 Aligned_cols=243 Identities=18% Similarity=0.251 Sum_probs=119.8
Q ss_pred hHHHHHHHHhcCCCCEE--EEcc-C------C-hHH---HHHHHhCCCeEEEeeCCCC---------cccc-cC--HH--
Q 043079 45 PTHVAHFLLESTIINRV--RLFD-A------D-PKM---IRAFAHTGIAVTVTVPNDQ---------IPYL-TK--LN-- 97 (460)
Q Consensus 45 ~~~vv~ll~k~~~~~~V--RiY~-~------d-~~v---L~A~~~tgi~v~vGv~n~~---------l~~~-~~--~~-- 97 (460)
..++.++| |..|++.| |+|. + | ..+ .+.+++.|++|+|-.--.| ++.- .+ .+
T Consensus 26 ~~d~~~il-k~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l 104 (332)
T PF07745_consen 26 EKDLFQIL-KDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQL 104 (332)
T ss_dssp B--HHHHH-HHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHH
T ss_pred CCCHHHHH-HhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHH
Confidence 46789999 99998855 5552 1 1 133 4556689999999984321 2222 22 11
Q ss_pred --HHHHHHHhccccCC-CCccEEEEEeccccccc-----cchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccc
Q 043079 98 --FAEQWLKNNIQPYT-PATNIVRIFVGNEILST-----ASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILS 169 (460)
Q Consensus 98 --~a~~wv~~nv~~~~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~ 169 (460)
+..++.++-+...- -+..+..|-||||+-.. +.....+.+...++.-.+++++..- .+||-.-..
T Consensus 105 ~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~----- 177 (332)
T PF07745_consen 105 AKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA----- 177 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-----
T ss_pred HHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-----
Confidence 12223222222211 24678899999997443 1123456777777777788877443 355533211
Q ss_pred cCCCCCCccccCCccchhhhhHHHHHhhc---CCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHH
Q 043079 170 SSSPPSSGKFHQGYDIHVLKPLLSFLRAT---KSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLD 246 (460)
Q Consensus 170 ~s~pPS~g~f~~~~~~~~~~~~ldfL~~~---~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~D 246 (460)
+ |-.. ..++-..+-|... =|.+.++.||||.. ++ +.+...++
T Consensus 178 ~--~~~~---------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---~l---------------------~~l~~~l~ 222 (332)
T PF07745_consen 178 N--GGDN---------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---TL---------------------EDLKNNLN 222 (332)
T ss_dssp ---TTSH---------HHHHHHHHHHHHTTGG-SEEEEEE-STTST----H---------------------HHHHHHHH
T ss_pred C--CCch---------HHHHHHHHHHHhcCCCcceEEEecCCCCcc---hH---------------------HHHHHHHH
Confidence 0 0000 1122333333332 36789999999985 10 11223333
Q ss_pred HHHHHHHHhCCCCceEEEeeeccCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccE
Q 043079 247 AVFSAMKLLGFDDVEIVIAETGWPSKGDS-----S---------QVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFET 312 (460)
Q Consensus 247 a~~~a~~k~g~~~~~vvVtETGWPS~G~~-----~---------~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~ 312 (460)
.+ .++ | +|+|+|.|||||..-.. + +..+|++.|+.|++.+++.+.+- |. +.++-+
T Consensus 223 ~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~Gv 291 (332)
T PF07745_consen 223 DL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLGV 291 (332)
T ss_dssp HH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEE
T ss_pred HH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEEE
Confidence 22 234 3 58999999999998211 1 11368999999999999998752 11 123445
Q ss_pred EEEE-cccCCC-----CCCCCCCcceeccCCCCCee
Q 043079 313 YIFA-LFNEDL-----KQGPTCERNFGLFHPNMTPV 342 (460)
Q Consensus 313 yiF~-lFDE~~-----K~G~~~E~~wGlf~~d~~~k 342 (460)
|+-| ..-..+ ..|...|.. +||+.+|++-
T Consensus 292 fYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l 326 (332)
T PF07745_consen 292 FYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNAL 326 (332)
T ss_dssp EEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-
T ss_pred EeeccccccCCcccccCCCCCcccc-ccCCCCCCCc
Confidence 5444 332222 234344444 8898888753
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.58 E-value=5.8e-07 Score=90.36 Aligned_cols=157 Identities=22% Similarity=0.360 Sum_probs=84.2
Q ss_pred eeEEecCCCC-------C-CCChHH---HHHHHHhcCCCCEEEEccCCh-----HHHHHHHhCCCeEEEeeCCCCcccc-
Q 043079 31 IGVNYGTVAN-------N-LPPPTH---VAHFLLESTIINRVRLFDADP-----KMIRAFAHTGIAVTVTVPNDQIPYL- 93 (460)
Q Consensus 31 ~GvnYg~~~~-------n-~ps~~~---vv~ll~k~~~~~~VRiY~~d~-----~vL~A~~~tgi~v~vGv~n~~l~~~- 93 (460)
.||.|-+.++ | |..++. .+.+| |.+|+..||+|..|| +-+.+|++.||-|++.+... -.++
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l-~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~ 107 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLL-KELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSIN 107 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHH-HHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHH-HHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Ccccc
Confidence 6999999876 3 223332 35677 889999999998885 57899999999999999754 2333
Q ss_pred -cCHHHHHHH-------HHhccccCCCCccEEEEEecccccccc-chhhHHHHHHHHHHHHHHHhhCCCCCceEEecccc
Q 043079 94 -TKLNFAEQW-------LKNNIQPYTPATNIVRIFVGNEILSTA-SKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHS 164 (460)
Q Consensus 94 -~~~~~a~~w-------v~~nv~~~~~~~~I~~I~VGNEvl~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~ 164 (460)
.++ +..| ..+-|..+..-.|+-+..+|||++... ....++.+-.+++.+|+-+++.++. +|+|+-+-+
T Consensus 108 r~~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaa 184 (314)
T PF03198_consen 108 RSDP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAA 184 (314)
T ss_dssp TTS--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-
T ss_pred CCCC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEcc
Confidence 222 1223 222233343337899999999999864 2335778888999999999998885 588875432
Q ss_pred ccccccCCCCCCccccCCccchhhhhHHHHHh-----hcCCCccccCCCCC
Q 043079 165 LGILSSSSPPSSGKFHQGYDIHVLKPLLSFLR-----ATKSPFLINPYPFF 210 (460)
Q Consensus 165 ~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~-----~~~sp~~vNiyPyf 210 (460)
|+- ..-.++.+||. +.-|.+.+|.|-+=
T Consensus 185 -D~~-----------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 185 -DDA-----------------EIRQDLANYLNCGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp ---T-----------------TTHHHHHHHTTBTT-----S-EEEEE----
T ss_pred -CCh-----------------hHHHHHHHHhcCCCcccccceeeeccceec
Confidence 110 11235566664 34467788876553
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=2.5e-05 Score=77.72 Aligned_cols=208 Identities=17% Similarity=0.236 Sum_probs=112.5
Q ss_pred hHHHHHHHHhcCCCCEE--EEc----cCC--------hH------HHHHHHhCCCeEEEeeCCCCcccc-cCHHHHHHHH
Q 043079 45 PTHVAHFLLESTIINRV--RLF----DAD--------PK------MIRAFAHTGIAVTVTVPNDQIPYL-TKLNFAEQWL 103 (460)
Q Consensus 45 ~~~vv~ll~k~~~~~~V--RiY----~~d--------~~------vL~A~~~tgi~v~vGv~n~~l~~~-~~~~~a~~wv 103 (460)
.++..+.| |..|+..| |+| |.| .+ +-+.+++.|+||++-.--.|.=+- ..+..-.+|.
T Consensus 65 ~qD~~~iL-K~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 65 RQDALQIL-KNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred HHHHHHHH-HHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 46678889 99998755 555 333 12 234456789999998754321100 0011111232
Q ss_pred -------HhccccC--------C-CCccEEEEEeccccccc-----cchhhHHHHHHHHHHHHHHHhhCCCCCceEEecc
Q 043079 104 -------KNNIQPY--------T-PATNIVRIFVGNEILST-----ASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTP 162 (460)
Q Consensus 104 -------~~nv~~~--------~-~~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 162 (460)
++.|-.| . .+..+.-|-||||.-.. ++......+...++.-.+++|...- .|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p--~ikv~lH 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP--TIKVALH 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC--CceEEEE
Confidence 2222222 1 23567789999997432 1111245555666666666666432 4666432
Q ss_pred ccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhH
Q 043079 163 HSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLD 242 (460)
Q Consensus 163 ~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fd 242 (460)
. .+ |--.+.||- +.+..-+.-+|| |.|..--||||.+. + + | +.
T Consensus 222 l-----a~--g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgt-l--~--------------------n-L~ 264 (403)
T COG3867 222 L-----AE--GENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGT-L--N--------------------N-LT 264 (403)
T ss_pred e-----cC--CCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCc-H--H--------------------H-HH
Confidence 2 22 112233431 111122233333 56788999999971 1 0 0 11
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 043079 243 GQLDAVFSAMKLLGFDDVEIVIAETGW--------------PSKGDSSQVGVDSQSAADYNMNLMRHVTS 298 (460)
Q Consensus 243 a~~Da~~~a~~k~g~~~~~vvVtETGW--------------PS~G~~~~~~as~~na~~y~~~lv~~~~s 298 (460)
..++.+.. + | +|.|+|.||+. |+.+...+...+++-|++|.+.++..+.+
T Consensus 265 ~nl~dia~---r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 265 TNLNDIAS---R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred hHHHHHHH---H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 11221211 1 1 58999999998 66664323347889999999999999874
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.76 E-value=0.0012 Score=64.52 Aligned_cols=128 Identities=20% Similarity=0.076 Sum_probs=81.6
Q ss_pred ceeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEccC-------------C-------hHHHHHHHhCCCeEEEeeCCC-
Q 043079 30 SIGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDA-------------D-------PKMIRAFAHTGIAVTVTVPND- 88 (460)
Q Consensus 30 ~~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~-------------d-------~~vL~A~~~tgi~v~vGv~n~- 88 (460)
..|+|-. ..++. ..++.++.+ ++.|++.|||.-. + ..+|+++++.||.|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~-~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQL-KALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHH-HHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred eeeeecc-cCCCC-CHHHHHHHH-HHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4566665 22222 677888999 9999999999721 1 157788899999999998753
Q ss_pred C---cccc-cCHHHHHHHHHh----ccccCCCCccEEEEEeccccccccch-----hhHHHHHHHHHHHHHHHhhCCCCC
Q 043079 89 Q---IPYL-TKLNFAEQWLKN----NIQPYTPATNIVRIFVGNEILSTASK-----LLIASLVPAMQTLHTALVGVSLDR 155 (460)
Q Consensus 89 ~---l~~~-~~~~~a~~wv~~----nv~~~~~~~~I~~I~VGNEvl~~~~~-----~~~~~Lv~am~~v~~aL~~~gl~~ 155 (460)
. -... .......+|+++ -...|-....|.++=+.||+...... .....+.+.++.+.+++++.+-..
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 0 1111 223333334332 22233234568899999999876321 123678889999999999998764
Q ss_pred ceEEe
Q 043079 156 RIQVS 160 (460)
Q Consensus 156 ~IkVs 160 (460)
.|-|.
T Consensus 167 ~i~~~ 171 (281)
T PF00150_consen 167 LIIVG 171 (281)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 44343
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.66 E-value=0.0081 Score=66.50 Aligned_cols=238 Identities=15% Similarity=0.118 Sum_probs=127.8
Q ss_pred HHHHHhcCCCCEEEEc--cCChHHHHHHHhCCCeEEEeeCCCC---------------ccccc-------CHHHHHHHHH
Q 043079 49 AHFLLESTIINRVRLF--DADPKMIRAFAHTGIAVTVTVPNDQ---------------IPYLT-------KLNFAEQWLK 104 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY--~~d~~vL~A~~~tgi~v~vGv~n~~---------------l~~~~-------~~~~a~~wv~ 104 (460)
+++| |..|++.||+- -.++..+.++-..||-|+.=++... -+... ..+....-++
T Consensus 319 ~~l~-K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 319 HNLM-KWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHH-HHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 4566 89999999993 3367899999999999886543210 00010 0112223355
Q ss_pred hccccCCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCcc
Q 043079 105 NNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYD 184 (460)
Q Consensus 105 ~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~ 184 (460)
..|..+.-.-.|..=.+|||.-... ...-..++.+.+.+++..-.. +|+.+..+. . .|..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~---~--~~~~-------- 457 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDPTR--PVTCVNVMF---A--TPDT-------- 457 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCCCC--ceEEEeccc---C--Cccc--------
Confidence 5666654445688889999974331 112233444444554443222 344432110 0 0100
Q ss_pred chhhhhHHHHHhhcCCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEE
Q 043079 185 IHVLKPLLSFLRATKSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVI 264 (460)
Q Consensus 185 ~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvV 264 (460)
..+.+++|+ +..|.|+=|-...- +.+. ....++..++.. .+. + ++|++|
T Consensus 458 -~~~~~~~Dv-------~~~N~Y~~wy~~~~--~~~~---------------~~~~~~~~~~~~----~~~-~-~kP~~i 506 (604)
T PRK10150 458 -DTVSDLVDV-------LCLNRYYGWYVDSG--DLET---------------AEKVLEKELLAW----QEK-L-HKPIII 506 (604)
T ss_pred -ccccCcccE-------EEEcccceecCCCC--CHHH---------------HHHHHHHHHHHH----HHh-c-CCCEEE
Confidence 012233444 45777653221000 0000 011222222211 111 3 799999
Q ss_pred eeeccCCCCCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCCCCC--CCCcceeccCCCC
Q 043079 265 AETGWPSKGDSS---QVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQGP--TCERNFGLFHPNM 339 (460)
Q Consensus 265 tETGWPS~G~~~---~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K~G~--~~E~~wGlf~~d~ 339 (460)
+|.|+.+.-+.. ...-|.+.|..|++...+.+.+ +|. -+-.|+..+||-....|. .-..+.||++.||
T Consensus 507 sEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 507 TEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred EccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCC
Confidence 999976632211 1124688888888877776653 232 456899999996554431 1224789999999
Q ss_pred Ceeeee
Q 043079 340 TPVYDV 345 (460)
Q Consensus 340 ~~ky~l 345 (460)
+||-..
T Consensus 580 ~~k~~~ 585 (604)
T PRK10150 580 QPKSAA 585 (604)
T ss_pred CChHHH
Confidence 999543
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.37 E-value=0.014 Score=57.53 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCCceEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCC
Q 043079 247 AVFSAMKLLGFDDVEIVIAETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQG 325 (460)
Q Consensus 247 a~~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G 325 (460)
.+...|++++--+++|+|||.+-|..+ +.+.|+.+++.+++.+.+. | + ...+++..+.|. .|.++
T Consensus 170 ~~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~ 235 (254)
T smart00633 170 EIRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG 235 (254)
T ss_pred HHHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC
Confidence 344455555545899999999988752 3488899999999988763 2 1 233555566663 45543
Q ss_pred CCCCcceeccCCCCCee
Q 043079 326 PTCERNFGLFHPNMTPV 342 (460)
Q Consensus 326 ~~~E~~wGlf~~d~~~k 342 (460)
.+-|||+.|++||
T Consensus 236 ----~~~~L~d~~~~~k 248 (254)
T smart00633 236 ----GAPLLFDANYQPK 248 (254)
T ss_pred ----CCceeECCCCCCC
Confidence 4678999999877
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.72 E-value=0.068 Score=52.37 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=90.8
Q ss_pred ccEEEEEecccccccc-chhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhhHH
Q 043079 114 TNIVRIFVGNEILSTA-SKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLL 192 (460)
Q Consensus 114 ~~I~~I~VGNEvl~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~l 192 (460)
..++.|..=||+=... ...++++.+...+++.+.|+. ..+|+..|.....-. + +|+.. .-|.+.+
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~-~~~g~--------~Wl~~F~ 129 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-G-TPGGL--------DWLSQFL 129 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-C-CCCcc--------HHHHHHH
Confidence 4678899999975542 123466667766666666663 247777664311000 0 11111 1222222
Q ss_pred HHHhhcCCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEeeeccCCC
Q 043079 193 SFLRATKSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIAETGWPSK 272 (460)
Q Consensus 193 dfL~~~~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETGWPS~ 272 (460)
+-+...+.+=.+++|.| . .-++...+.+....++.| +||+|||.|+...
T Consensus 130 ~~~~~~~~~D~iavH~Y-~---------------------------~~~~~~~~~i~~~~~~~~---kPIWITEf~~~~~ 178 (239)
T PF11790_consen 130 SACARGCRVDFIAVHWY-G---------------------------GDADDFKDYIDDLHNRYG---KPIWITEFGCWNG 178 (239)
T ss_pred HhcccCCCccEEEEecC-C---------------------------cCHHHHHHHHHHHHHHhC---CCEEEEeecccCC
Confidence 22211112222334444 1 112333343434444543 9999999998772
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCCCCCCCCcceeccCCCCCe
Q 043079 273 GDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQGPTCERNFGLFHPNMTP 341 (460)
Q Consensus 273 G~~~~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K~G~~~E~~wGlf~~d~~~ 341 (460)
+. ..+.+.++.|.+..+..+.+. +. --.++||...+. + .....+-.|++.+|++
T Consensus 179 ~~----~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~~-~---~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 179 GS----QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMND-G---SGVNPNSALLDADGSL 232 (239)
T ss_pred CC----CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecccccc-c---CCCccccccccCCCCc
Confidence 22 478899999999999998753 22 345778883222 2 2345555677777743
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.34 E-value=1.6 Score=43.82 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=55.9
Q ss_pred ceeEEecCCCCC---CCChHHH---HHHHHhcCCCCEEEEcc--CChHHHHHHHhCCCeEEEeeCCCCc---cc------
Q 043079 30 SIGVNYGTVANN---LPPPTHV---AHFLLESTIINRVRLFD--ADPKMIRAFAHTGIAVTVTVPNDQI---PY------ 92 (460)
Q Consensus 30 ~~GvnYg~~~~n---~ps~~~v---v~ll~k~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~~l---~~------ 92 (460)
..|||+...... .++.+.. ++++ |..|++.||+.. .++..+.++-..||-|+.-++.... ..
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~-k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~ 95 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELM-KEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNY 95 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHH-HHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSC
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHH-HhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCcccc
Confidence 359998875333 2455554 4556 889999999963 4579999999999999988765110 00
Q ss_pred c-cCH---HHHHHHHHhccccCCCCccEEEEEecccc
Q 043079 93 L-TKL---NFAEQWLKNNIQPYTPATNIVRIFVGNEI 125 (460)
Q Consensus 93 ~-~~~---~~a~~wv~~nv~~~~~~~~I~~I~VGNEv 125 (460)
. .++ +.+.+.++..|..+.-.-.|..=.+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0 122 23344556666665433458888899999
No 13
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=85.24 E-value=7.7 Score=40.36 Aligned_cols=96 Identities=10% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCCEEEEcc-CChHHHHHHHhCCCeEEEeeCCCCcccccCHHHHHHHHHhccccCCCCccEEEEEeccccccccchhhHH
Q 043079 57 IINRVRLFD-ADPKMIRAFAHTGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIA 135 (460)
Q Consensus 57 ~~~~VRiY~-~d~~vL~A~~~tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~ 135 (460)
.+++|-+|+ .|++++..++..|++|++..-.. .+.++++..-+.++++-| .++..-.+.+|-+==|-....+.....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 478899885 47899999999999999864321 222345544444544432 222222344555433322211112346
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 043079 136 SLVPAMQTLHTALVGVSLD 154 (460)
Q Consensus 136 ~Lv~am~~v~~aL~~~gl~ 154 (460)
.++..|+++|++|.+.+.+
T Consensus 133 ~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 133 ALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 7889999999999987643
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=79.46 E-value=1.2 Score=47.69 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCceEEEeeeccCCCCCCCCCCCC----HHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCCCCCCCCcce
Q 043079 257 FDDVEIVIAETGWPSKGDSSQVGVD----SQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQGPTCERNF 332 (460)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~~~~as----~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K~G~~~E~~w 332 (460)
|++++|+|||.|++........... ++--+.+++.+.+.+. .|-+ -+-+|..++.|- +--+.+..+.|
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~-----V~GY~~WSl~Dn-~Ew~~Gy~~rf 424 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVN-----VRGYFAWSLLDN-FEWAEGYKKRF 424 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-E-----EEEEEEETSB----BGGGGGGSE-
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCC-----eeeEeeeccccc-cccccCccCcc
Confidence 6789999999999887654321111 1223445555555553 2422 134667777773 33222589999
Q ss_pred eccCCC
Q 043079 333 GLFHPN 338 (460)
Q Consensus 333 Glf~~d 338 (460)
||++.|
T Consensus 425 Gl~~VD 430 (455)
T PF00232_consen 425 GLVYVD 430 (455)
T ss_dssp -SEEEE
T ss_pred CceEEc
Confidence 999988
No 15
>PRK09936 hypothetical protein; Provisional
Probab=75.30 E-value=54 Score=33.37 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhhcccCCceeEEecCCCCCC-CChHHHHHHH--HhcCCCCEEEE-c----cCC--------hHHHH
Q 043079 9 PTFTILLLVVVSISLIHGSEGSIGVNYGTVANNL-PPPTHVAHFL--LESTIINRVRL-F----DAD--------PKMIR 72 (460)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~-ps~~~vv~ll--~k~~~~~~VRi-Y----~~d--------~~vL~ 72 (460)
-+|+..+|++|..+-.+ -+--|+=|-|...|. -++++--+++ .+..|++.+=+ | +.| ...|+
T Consensus 2 ~~~~~~~l~~l~~~~~~--~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~ 79 (296)
T PRK09936 2 RKFIFVLLTLLLVSPFS--QAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLA 79 (296)
T ss_pred hhHHHHHHHHHHcCchh--hccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHH
Confidence 34555444444433211 124577799998773 5666655544 16678876544 2 222 26788
Q ss_pred HHHhCCCeEEEeeCCC
Q 043079 73 AFAHTGIAVTVTVPND 88 (460)
Q Consensus 73 A~~~tgi~v~vGv~n~ 88 (460)
++...||+|.||++-|
T Consensus 80 ~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 80 AAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHcCCEEEEcccCC
Confidence 8899999999999865
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=68.90 E-value=12 Score=38.90 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCEEEEccC-------C---------hHHHHHHHhCCCeEEEeeCCCCcc------------------
Q 043079 46 THVAHFLLESTIINRVRLFDA-------D---------PKMIRAFAHTGIAVTVTVPNDQIP------------------ 91 (460)
Q Consensus 46 ~~vv~ll~k~~~~~~VRiY~~-------d---------~~vL~A~~~tgi~v~vGv~n~~l~------------------ 91 (460)
++.++++ |..|++.|||... . ..+|..+++.||+|+|+++....+
T Consensus 13 ~~d~~~m-~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 13 EEDLRLM-KEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHH-HHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHH-HHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 4566777 8889999998432 1 267888899999999998632110
Q ss_pred --------cc--cC---HHHHHHHHHhccccCCCCccEEEEEecccccc
Q 043079 92 --------YL--TK---LNFAEQWLKNNIQPYTPATNIVRIFVGNEILS 127 (460)
Q Consensus 92 --------~~--~~---~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~ 127 (460)
.. .+ .+.+...++..+..|-..-.|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 01 12344555555555654567999999999755
No 17
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.21 E-value=21 Score=37.34 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=42.3
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCceEEEeeeccCCCCCCCCC---CCCHHHHHHHHHHHHHHHhcC
Q 043079 237 YTNMLDGQLDAVFSAMKLLGFDDVEIVIAETGWPSKGDSSQV---GVDSQSAADYNMNLMRHVTSG 299 (460)
Q Consensus 237 Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETGWPS~G~~~~~---~as~~na~~y~~~lv~~~~s~ 299 (460)
|.|-|++-+-.........|++..+|+.+ |||.|...+. ..|..-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 67778776665555566677888899887 9999986422 355556667777788777643
No 18
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=64.77 E-value=8.4 Score=35.80 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 48 VAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 48 vv~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
-+|+| +..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL-~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQIL-RDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHH-HHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHH-HHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36888 889999999999999999999999999975554
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=60.97 E-value=20 Score=38.21 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=42.9
Q ss_pred CCCceEEEeeeccCCCCCCCCCCCC----HHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCcc
Q 043079 257 FDDVEIVIAETGWPSKGDSSQVGVD----SQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERN 331 (460)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~~~~as----~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~ 331 (460)
|.+.+|+|||.|+............ ++--+.+++.+.+.+. .|-|. +-++.-++.|- .|..| ..+.
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v-----~GY~~Wsl~Dn~ew~~g--y~~r 405 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIE--EGVDV-----RGYFVWSLLDNFEWAEG--YSKR 405 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHH--CCCCE-----EEEEecccccccchhcc--cccc
Confidence 5556899999999754321100011 2223344444444443 34332 34667777774 24444 8999
Q ss_pred eeccCCCCC
Q 043079 332 FGLFHPNMT 340 (460)
Q Consensus 332 wGlf~~d~~ 340 (460)
|||++.|+.
T Consensus 406 fGl~~VD~~ 414 (427)
T TIGR03356 406 FGLVHVDYE 414 (427)
T ss_pred cceEEECCC
Confidence 999998866
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=56.81 E-value=39 Score=36.52 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCC-ceEEEeeeccCCCCCCCCCC-C----CHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCC
Q 043079 257 FDD-VEIVIAETGWPSKGDSSQVG-V----DSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCE 329 (460)
Q Consensus 257 ~~~-~~vvVtETGWPS~G~~~~~~-a----s~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E 329 (460)
|++ .+|+|||.|+.........+ . =++--+.+++.+.+.+. .|-+. .-+|.-++.|- .|..| .+
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v-----~GY~~WSl~DnfEW~~G--y~ 435 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGANV-----KGYFIWSLMDVFSWSNG--YE 435 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeecccccccchhcC--cc
Confidence 555 57999999997543211000 1 12233444554444443 35432 34677788874 35555 99
Q ss_pred cceeccCCCCC
Q 043079 330 RNFGLFHPNMT 340 (460)
Q Consensus 330 ~~wGlf~~d~~ 340 (460)
+.|||++.|.+
T Consensus 436 ~RfGl~~VD~~ 446 (469)
T PRK13511 436 KRYGLFYVDFE 446 (469)
T ss_pred CccceEEECCC
Confidence 99999998865
No 21
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.87 E-value=17 Score=34.63 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEE
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVT 82 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 82 (460)
+|+| +..|+++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL-~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADML-KALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 6888 89999999999999888899999999998
No 22
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=55.69 E-value=18 Score=34.34 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEE
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVT 82 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 82 (460)
+|+| +..|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL-~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADIL-EDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 6888 99999999999999888899999999998
No 23
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=53.31 E-value=1.9e+02 Score=29.81 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=73.9
Q ss_pred CCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCCCC--CCcccccccCCCc-------eecCCCCceecchh
Q 043079 171 SSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSP--ETLDYALFRPNSG-------VFDENTKIVYTNML 241 (460)
Q Consensus 171 s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~--~~ldyA~f~~~~~-------~~d~~~~~~Y~n~f 241 (460)
.+|...+.+.++.. +.++++++.+.+.++.+.+.+.---.... .+.. ....+... .....|.-.-..+.
T Consensus 63 ~~~~~~~l~~d~~i-~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~ii 140 (343)
T cd04734 63 PAFGNLNASDDEII-PGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEEII 140 (343)
T ss_pred CCCCccccCCHHHH-HHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 35555667776654 68999999999999999888753211100 0000 00000000 00001111112344
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEeeecc-------CC-CCCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 043079 242 DGQLDAVFSAMKLLGFDDVEIVIAETGW-------PS-KGDSSQVGVDSQSAADYNMNLMRHVTSGNG 301 (460)
Q Consensus 242 da~~Da~~~a~~k~g~~~~~vvVtETGW-------PS-~G~~~~~~as~~na~~y~~~lv~~~~s~~G 301 (460)
+...+|...| +++||.+++|--.. || |. .-..++.+.+++|-.+|...+++.+++..|
T Consensus 141 ~~f~~AA~ra-~~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 141 AAFADAARRC-QAGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHH-HHcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 5555555544 45799999998766 64 42 222234578999999999999999987655
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.96 E-value=45 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=34.3
Q ss_pred CChHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHHhCCCeEEEeeC
Q 043079 43 PPPTHVAHFLLESTIINRVRLFDAD-----PKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 43 ps~~~vv~ll~k~~~~~~VRiY~~d-----~~vL~A~~~tgi~v~vGv~ 86 (460)
-++++.++.. +.+|++.|=+=|-+ +...+.++..||+++.|+.
T Consensus 15 ~~~~~~~~~a-~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRA-KELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHH-HHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 4678888888 88999888877766 3566677789999999985
No 25
>PLN02998 beta-glucosidase
Probab=49.33 E-value=37 Score=37.08 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCCceEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCcceec
Q 043079 257 FDDVEIVIAETGWPSKGDSS-QVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERNFGL 334 (460)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~wGl 334 (460)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|-+. .-+|.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 55568999999997653100 000122334455555555553 34332 34667777772 35554 8999999
Q ss_pred cCCCCC
Q 043079 335 FHPNMT 340 (460)
Q Consensus 335 f~~d~~ 340 (460)
++.|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 988754
No 26
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=47.50 E-value=22 Score=37.41 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEE
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVT 82 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 82 (460)
+|+| |..|+++|||. .+|.-+.+|.+.||+|.
T Consensus 331 AqIL-r~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQIL-QDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHH-HHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 6788 99999999999 78999999999999997
No 27
>PLN02814 beta-glucosidase
Probab=46.91 E-value=47 Score=36.40 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=43.8
Q ss_pred CCCceEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCcceec
Q 043079 257 FDDVEIVIAETGWPSKGDSS-QVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERNFGL 334 (460)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~wGl 334 (460)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|-|. .-+|.-++.|- .|..| .++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V-----~GY~~WSllDnfEW~~G--y~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDT-----RGYFVWSMIDLYELLGG--YTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 56668999999997542110 000112334445555545443 35432 34667777772 34454 9999999
Q ss_pred cCCCCC
Q 043079 335 FHPNMT 340 (460)
Q Consensus 335 f~~d~~ 340 (460)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 988765
No 28
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.63 E-value=90 Score=30.35 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=33.4
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCceEEEeeeccCCCCCCCCC---CCCHHHHHHHHHHHHHHHhc
Q 043079 237 YTNMLDGQLDAVFSAMKLLGFDDVEIVIAETGWPSKGDSSQV---GVDSQSAADYNMNLMRHVTS 298 (460)
Q Consensus 237 Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETGWPS~G~~~~~---~as~~na~~y~~~lv~~~~s 298 (460)
|.+-|+..+.....-...+++++..|+. .|||.|...+. ..+...++..+.+++..+..
T Consensus 27 yn~~f~~a~~r~aql~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 27 YNNSFEDALRRAAQLAHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4444554444443344556677755555 59999986321 23444555556666666653
No 29
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=45.53 E-value=31 Score=32.70 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEee
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTV 85 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv 85 (460)
+|+| +..|+++||+.+..+.-+.+|.+.||+|+=-+
T Consensus 133 AQIL-~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQIL-RDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHH-HHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 6888 89999999999998888899999999998333
No 30
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.49 E-value=26 Score=36.82 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEee
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTV 85 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv 85 (460)
+|+| +..|+++|||.. +|.-+.+|.+.||+|.==+
T Consensus 328 aqIL-~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQIL-RDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHH-HHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6888 999999999999 8999999999999998333
No 31
>PLN02849 beta-glucosidase
Probab=41.76 E-value=87 Score=34.29 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=44.3
Q ss_pred CCCceEEEeeeccCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCcce
Q 043079 257 FDDVEIVIAETGWPSKGDSSQVG---VDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERNF 332 (460)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~~~~---as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~w 332 (460)
|+..+|+|||-|++......+.. -=++--+.+++.+.+.+. .|-+. .-+|.-++.|- .|..| .++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~DnfEW~~G--y~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMDLYELLKG--YEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCcc
Confidence 55668999999998654311100 112334445555555543 34332 34667777773 24444 89999
Q ss_pred eccCCCCC
Q 043079 333 GLFHPNMT 340 (460)
Q Consensus 333 Glf~~d~~ 340 (460)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99988765
No 32
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.18 E-value=36 Score=35.40 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCEEEEccCC-hHHHHHHHhCCCeEE
Q 043079 48 VAHFLLESTIINRVRLFDAD-PKMIRAFAHTGIAVT 82 (460)
Q Consensus 48 vv~ll~k~~~~~~VRiY~~d-~~vL~A~~~tgi~v~ 82 (460)
..|+| +..|+++|||...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL-~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQIL-KYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHH-HHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 36788 99999999999999 888899999999986
No 33
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.50 E-value=40 Score=35.70 Aligned_cols=37 Identities=35% Similarity=0.574 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+| +..|+++||+...+|.-+.++.+.||+|.=-++
T Consensus 320 AqIL-~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQIL-KALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788 999999999999999999999999999984444
No 34
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=39.37 E-value=2e+02 Score=29.69 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=51.4
Q ss_pred CCceeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeCCCCcccccCHHHHHHHHHhcc
Q 043079 28 EGSIGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQIPYLTKLNFAEQWLKNNI 107 (460)
Q Consensus 28 ~~~~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv 107 (460)
...+|||.-...++ |..++.++.+ ...+.+.|=+..-+|..++.++..||+|+.-|++ ...|..+++..+
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi-~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga 124 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVV-RAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA 124 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHH-HhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC
Confidence 34678887444332 3334555655 4556777766655666678899999999988773 455666665544
Q ss_pred ccCCCCccEEEEEecccc
Q 043079 108 QPYTPATNIVRIFVGNEI 125 (460)
Q Consensus 108 ~~~~~~~~I~~I~VGNEv 125 (460)
+. -|+-|.|.
T Consensus 125 D~--------vVaqG~EA 134 (320)
T cd04743 125 RK--------FIFEGREC 134 (320)
T ss_pred CE--------EEEecCcC
Confidence 32 47788887
No 35
>PRK08815 GTP cyclohydrolase; Provisional
Probab=39.23 E-value=40 Score=35.53 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+| +..|+++||+.+.++.-+.++.+.||+|.=-++
T Consensus 305 AQIL-~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAML-RGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHH-HHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788 889999999999999889999999999984444
No 36
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=38.76 E-value=91 Score=32.19 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHH-hCCCeEEEeeCCCCccc--ccCHHHHHHHHHhccccCC-----CCccEEEEEeccccccccc--hhhHHHHH
Q 043079 69 KMIRAFA-HTGIAVTVTVPNDQIPY--LTKLNFAEQWLKNNIQPYT-----PATNIVRIFVGNEILSTAS--KLLIASLV 138 (460)
Q Consensus 69 ~vL~A~~-~tgi~v~vGv~n~~l~~--~~~~~~a~~wv~~nv~~~~-----~~~~I~~I~VGNEvl~~~~--~~~~~~Lv 138 (460)
+.|..|. .+|++|+.|+.-- +.. +.+....-.|=-+|...++ .+=+|.+-=.|||.-..+- .-.+.++.
T Consensus 112 d~l~~F~~~tG~~liFgLNAL-~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qya 190 (319)
T PF03662_consen 112 DELNNFAQKTGLKLIFGLNAL-LGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYA 190 (319)
T ss_dssp HHHHHHHHHHT-EEEEEE-TT-TS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHH
T ss_pred HHHHHHHHHhCCEEEEEeccc-CCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHH
Confidence 4555554 8999999998621 110 0111233568777765543 1246777889999654321 12467777
Q ss_pred HHHHHHHHHHhh
Q 043079 139 PAMQTLHTALVG 150 (460)
Q Consensus 139 ~am~~v~~aL~~ 150 (460)
.....+|+.|++
T Consensus 191 kD~~~Lr~il~~ 202 (319)
T PF03662_consen 191 KDFIQLRKILNE 202 (319)
T ss_dssp HHH---HHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777887765
No 37
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=38.31 E-value=42 Score=37.15 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+| +..|+++|||...+|.-+.++.+.||+|.=-++
T Consensus 343 AQIL-~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQIL-NDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788 999999999999999999999999999984444
No 38
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=38.10 E-value=2.7e+02 Score=31.82 Aligned_cols=39 Identities=23% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCCCCC
Q 043079 280 VDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDLKQG 325 (460)
Q Consensus 280 as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~K~G 325 (460)
++-+++..++.+|++++.. +|+ +.+-.+|||--.+|+.+
T Consensus 578 ~~~~~~~~wl~~l~~~v~~------~~~-~~~k~vfelq~~dw~~~ 616 (671)
T PRK14582 578 VAEKSSDAWLIQLVNQVKN------IPG-ALDKTIFELQARDWQKN 616 (671)
T ss_pred cCcccHHHHHHHHHHHHHh------cCC-cccceEEEeeccccccC
Confidence 4445788899999999974 333 57888999999999843
No 39
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=38.04 E-value=72 Score=32.10 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=50.4
Q ss_pred ChHHHHHHHhCCCeEEEeeCCCC--------cccc-cCHHHHHHHHHhccccCCCCccEEEEEeccccccccchhhHHHH
Q 043079 67 DPKMIRAFAHTGIAVTVTVPNDQ--------IPYL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASL 137 (460)
Q Consensus 67 d~~vL~A~~~tgi~v~vGv~n~~--------l~~~-~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~L 137 (460)
+++++.+++..++||++.|.+.. ...+ +++..-... .++|..++..-.+.+|-+-=|.+.. .....+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~ 122 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKKYGYDGVNIDFENVPP---EDREAY 122 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHHhCCCcEEEecccCCH---HHHHHH
Confidence 35788888888999999987643 1233 444322222 2233333222245566665455432 235678
Q ss_pred HHHHHHHHHHHhhCCC
Q 043079 138 VPAMQTLHTALVGVSL 153 (460)
Q Consensus 138 v~am~~v~~aL~~~gl 153 (460)
+..|+.+|++|.+.++
T Consensus 123 ~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 123 TQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 9999999999987764
No 40
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.65 E-value=43 Score=35.60 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+| +..|+++||+...+|.-+.++.+.||+|.=-++
T Consensus 339 aqIL-~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQIL-VDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6788 889999999999999999999999999983343
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=37.48 E-value=64 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.0
Q ss_pred hHHHHHHHHhcCCCCEEE-------Ecc------CCh-------HHHHHHHhCCCeEEEeeCCCCcc
Q 043079 45 PTHVAHFLLESTIINRVR-------LFD------ADP-------KMIRAFAHTGIAVTVTVPNDQIP 91 (460)
Q Consensus 45 ~~~vv~ll~k~~~~~~VR-------iY~------~d~-------~vL~A~~~tgi~v~vGv~n~~l~ 91 (460)
-++.+++| |..|++.-| |+= .++ +++.+|.+.||+.+|.+.--+++
T Consensus 69 y~eDi~Lm-~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALF-AEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHH-HHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 35678888 888877665 441 232 68899999999999999765555
No 42
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=37.28 E-value=43 Score=36.17 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+| +..|+++||+...+|.-+.++.+.||+|.=-++
T Consensus 373 AqIL-~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQIL-RDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6788 899999999999999999999999999984443
No 43
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=35.64 E-value=22 Score=32.99 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHHHhhhhc---ccCCceeEEecCCCCCCCChHHHHHHH
Q 043079 4 AQIPLPTFTILLLVVVSISLIH---GSEGSIGVNYGTVANNLPPPTHVAHFL 52 (460)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GvnYg~~~~n~ps~~~vv~ll 52 (460)
|-++|-||||++.|+|+.+..- -+.....|-|++...-.-.|.|.+.+|
T Consensus 91 ASL~LgTffIS~~LilSvA~FFYLKrs~kLP~vfYrrnKA~alQP~EaAaMI 142 (180)
T PF14946_consen 91 ASLFLGTFFISLGLILSVASFFYLKRSSKLPHVFYRRNKAPALQPSEAAAMI 142 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeecccccCCccccccccccccCCcchhccc
Confidence 4578999999999988866511 123445677887754444556666666
No 44
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=35.55 E-value=3.4e+02 Score=32.56 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=58.7
Q ss_pred eeEEecCCCCC---CCChHHH---HHHHHhcCCCCEEEEcc--CChHHHHHHHhCCCeEEEeeCCCC-----cccc-cCH
Q 043079 31 IGVNYGTVANN---LPPPTHV---AHFLLESTIINRVRLFD--ADPKMIRAFAHTGIAVTVTVPNDQ-----IPYL-TKL 96 (460)
Q Consensus 31 ~GvnYg~~~~n---~ps~~~v---v~ll~k~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~~-----l~~~-~~~ 96 (460)
-|+|+-..... -.+++++ ++++ |..|++.||+-. .++..+..+-..||=|+--++.+. ...+ .++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lm-K~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLM-KQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHH-HHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 48887543222 2456654 4556 889999999953 357899999999999886654311 1112 222
Q ss_pred H---HHHHHHHhccccCCCCccEEEEEeccccc
Q 043079 97 N---FAEQWLKNNIQPYTPATNIVRIFVGNEIL 126 (460)
Q Consensus 97 ~---~a~~wv~~nv~~~~~~~~I~~I~VGNEvl 126 (460)
. +..+-++..|....-.-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 2 22333445555554345688889999963
No 45
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=35.32 E-value=81 Score=34.64 Aligned_cols=75 Identities=13% Similarity=0.342 Sum_probs=49.8
Q ss_pred CCCCceEEEeeeccCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCC
Q 043079 256 GFDDVEIVIAETGWPSKGDSSQ--V-----GVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPT 327 (460)
Q Consensus 256 g~~~~~vvVtETGWPS~G~~~~--~-----~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~ 327 (460)
.|++.+|.|+|-|-+...+... . ..=++..+.|++.+.+.+.. .|. ...-+|..+|.|- .|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC--
Confidence 4889999999999888754420 1 12345567777777776652 221 1235788898873 36665
Q ss_pred CCcceeccCCC
Q 043079 328 CERNFGLFHPN 338 (460)
Q Consensus 328 ~E~~wGlf~~d 338 (460)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 77899999853
No 46
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.60 E-value=4.7e+02 Score=26.25 Aligned_cols=129 Identities=20% Similarity=0.164 Sum_probs=73.8
Q ss_pred cCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCCCCCCcc-cccccCC-------CceecCCCCceecchh
Q 043079 170 SSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSPETLD-YALFRPN-------SGVFDENTKIVYTNML 241 (460)
Q Consensus 170 ~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ld-yA~f~~~-------~~~~d~~~~~~Y~n~f 241 (460)
..+|...+.+.++.. +.++++++.+.+.++.+.+-+..-=........ .....+. .......+...-..+.
T Consensus 62 ~~~~~~~~~~~~~~~-~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQLGIYDDEQI-PGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCCcCcCCHHHH-HHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 346667777877765 689999999999999888876421111000000 0000010 0000111111123445
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEeeec-------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 043079 242 DGQLDAVFSAMKLLGFDDVEIVIAETG-------WPSK-GDSSQVGVDSQSAADYNMNLMRHVTSGNG 301 (460)
Q Consensus 242 da~~Da~~~a~~k~g~~~~~vvVtETG-------WPS~-G~~~~~~as~~na~~y~~~lv~~~~s~~G 301 (460)
+...++...+ +++||.+++|..+- | .|.. -..++.+.+++|-.+|...+++.+++..|
T Consensus 141 ~~~~~aA~~a-~~aGfDgveih~~~-gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 141 EDFAAAARRA-KEAGFDGVEIHGAH-GYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHH-HHcCCCEEEEcchh-hhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 5555555544 45799999998763 3 3542 12234578999999999999999986543
No 47
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.13 E-value=5.7e+02 Score=26.81 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCC
Q 043079 133 LIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGC 212 (460)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~ 212 (460)
..+....+++.+|+.. .| +.+++.. +. ++| | + ....+...++|+.+.. +-.+++|||--+
T Consensus 271 ~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P---g----E-T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP---G----E-SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC---C----C-CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 4567777888877642 22 4444432 21 243 1 1 1246788899998654 556788888766
No 48
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=33.39 E-value=1.3e+02 Score=31.14 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=80.3
Q ss_pred eEEecCCCCCCCChHH---HHHHHHhcCCCCEEEEccC------------ChHHHHHHHhCCCeEEE--------eeCCC
Q 043079 32 GVNYGTVANNLPPPTH---VAHFLLESTIINRVRLFDA------------DPKMIRAFAHTGIAVTV--------TVPND 88 (460)
Q Consensus 32 GvnYg~~~~n~ps~~~---vv~ll~k~~~~~~VRiY~~------------d~~vL~A~~~tgi~v~v--------Gv~n~ 88 (460)
+-.|.|.|-| |+++| +++.| |++. ..-+||. |.-.++-+-..|++++| |+.|+
T Consensus 185 aCAhNPTGmD-PT~EQW~qia~vi-k~k~--lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYne 260 (410)
T KOG1412|consen 185 ACAHNPTGMD-PTREQWKQIADVI-KSKN--LFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNE 260 (410)
T ss_pred ccccCCCCCC-CCHHHHHHHHHHH-HhcC--ceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccc
Confidence 3348888877 66666 55666 4442 3334432 34577888888998885 67777
Q ss_pred Ccccc---cCHHHHHHHHHhcc----ccC--CC---CccEEEEEeccccccccc-----hhhHHHHHHHHHHHHHHHhhC
Q 043079 89 QIPYL---TKLNFAEQWLKNNI----QPY--TP---ATNIVRIFVGNEILSTAS-----KLLIASLVPAMQTLHTALVGV 151 (460)
Q Consensus 89 ~l~~~---~~~~~a~~wv~~nv----~~~--~~---~~~I~~I~VGNEvl~~~~-----~~~~~~Lv~am~~v~~aL~~~ 151 (460)
.+..+ ....+-..-|+..+ ..- .| +.+|. -|+|.... ......+...|++.|++|+..
T Consensus 261 RvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV-----~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~ 335 (410)
T KOG1412|consen 261 RVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIV-----HKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH 335 (410)
T ss_pred cccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443 11111111122211 110 11 12222 24444321 123566788899999999864
Q ss_pred CCCCceEEeccccccccccCCCCCCcccc-CCccchhhhhHHHHHhhc
Q 043079 152 SLDRRIQVSTPHSLGILSSSSPPSSGKFH-QGYDIHVLKPLLSFLRAT 198 (460)
Q Consensus 152 gl~~~IkVsT~~~~~vl~~s~pPS~g~f~-~~~~~~~~~~~ldfL~~~ 198 (460)
-+...||-+||.+.+. .|.|. -.+. -..+|+|.++
T Consensus 336 ----L~aL~TPGtWDHI~~Q----iGMFSyTGLt----p~qV~~li~~ 371 (410)
T KOG1412|consen 336 ----LVALKTPGTWDHITQQ----IGMFSYTGLT----PAQVDHLIEN 371 (410)
T ss_pred ----HHhcCCCCcHHHHHhh----ccceeecCCC----HHHHHHHHHh
Confidence 2668899999877652 36663 1222 2568888654
No 49
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=33.07 E-value=70 Score=34.15 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=31.0
Q ss_pred hHHHHHHH-H--hcCCCCEEEEccC--Ch----HHHHHHHhCCCeEEEeeC
Q 043079 45 PTHVAHFL-L--ESTIINRVRLFDA--DP----KMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 45 ~~~vv~ll-~--k~~~~~~VRiY~~--d~----~vL~A~~~tgi~v~vGv~ 86 (460)
+++||+.. + -.+|++.+|+||+ |. ..++|.+++|..+...+.
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 46676544 2 3489999999998 33 467888999998777664
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=33.06 E-value=89 Score=26.91 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---hHHHHHHHhCCCeEEE
Q 043079 47 HVAHFLLESTIINRVRLF--DAD---PKMIRAFAHTGIAVTV 83 (460)
Q Consensus 47 ~vv~ll~k~~~~~~VRiY--~~d---~~vL~A~~~tgi~v~v 83 (460)
++.+.+ +.+|++.|+++ +.. ..+|++|+..||++.-
T Consensus 51 ~~~~~~-~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKA-KEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHH-HHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 344555 77899998888 333 3789999999998653
No 51
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.56 E-value=5.4e+02 Score=26.23 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCC----CCCCcc------------cccccCCCc-------e
Q 043079 172 SPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGC----SPETLD------------YALFRPNSG-------V 228 (460)
Q Consensus 172 ~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~----~~~~ld------------yA~f~~~~~-------~ 228 (460)
+|...+.+.++.. +.++.+.|-+.+.++.+++.++- .+ ...+.. .....+... .
T Consensus 64 ~~~~~~~~~d~~~-~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~ 140 (336)
T cd02932 64 TPGDLGLWNDEQI-EALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT 140 (336)
T ss_pred CCCceeecCHHHH-HHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 4444456666655 68899999999999998888643 12 000000 000111100 0
Q ss_pred ecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEeeec------cCC-CCCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 043079 229 FDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIAETG------WPS-KGDSSQVGVDSQSAADYNMNLMRHVTSGNG 301 (460)
Q Consensus 229 ~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETG------WPS-~G~~~~~~as~~na~~y~~~lv~~~~s~~G 301 (460)
....+.-.-..+.+...++...+. ++||.+++|-.+.-. .|. .-..++.+.+++|-.+|...+++.+++..|
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 000110011345666667766654 479999999887632 252 222334578999999999999999987544
No 52
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=32.30 E-value=1.2e+02 Score=28.16 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=45.3
Q ss_pred HHHHHHHhC--CCeEEEeeCCCCcc---cc-cCHHHHHHHHHhccccCCCCccEEEEEeccccccccchhhHHHHHHHHH
Q 043079 69 KMIRAFAHT--GIAVTVTVPNDQIP---YL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQ 142 (460)
Q Consensus 69 ~vL~A~~~t--gi~v~vGv~n~~l~---~~-~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~ 142 (460)
.-++.++.. |++|++.|...... .+ .+++..++.++ ++..++..-++.+|-+==|-....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345666654 99999998753322 23 44433333222 2222322224555555333322211012567999999
Q ss_pred HHHHHHhhCCC
Q 043079 143 TLHTALVGVSL 153 (460)
Q Consensus 143 ~v~~aL~~~gl 153 (460)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 53
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=32.18 E-value=70 Score=32.68 Aligned_cols=219 Identities=17% Similarity=0.168 Sum_probs=110.0
Q ss_pred HHHHHHHhCCCeEEE--eeCCCCcccc--c----C-------HHHHHHHHHhccccCCCC-ccEEEEEeccccccccc--
Q 043079 69 KMIRAFAHTGIAVTV--TVPNDQIPYL--T----K-------LNFAEQWLKNNIQPYTPA-TNIVRIFVGNEILSTAS-- 130 (460)
Q Consensus 69 ~vL~A~~~tgi~v~v--Gv~n~~l~~~--~----~-------~~~a~~wv~~nv~~~~~~-~~I~~I~VGNEvl~~~~-- 130 (460)
.++.-++..||+|-- =||-...+.. . + .+...++|++.+..| .+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 566777788988763 2454333322 1 1 123346676655555 43 47999989999998642
Q ss_pred ----hhh------HHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCC
Q 043079 131 ----KLL------IASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKS 200 (460)
Q Consensus 131 ----~~~------~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~s 200 (460)
... ...+..+.+-.|++...+.| ---+ .+++. + .-+ ..+..+++.|.+.+-
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L------~~ND-y~~~~----~-------~k~-~~~~~lv~~l~~~gv 202 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNAKL------FYND-YNIES----P-------AKR-DAYLNLVKDLKARGV 202 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEE------EEEE-SSTTS----T-------HHH-HHHHHHHHHHHHTTH
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCcEE------Eecc-ccccc----h-------HHH-HHHHHHHHHHHhCCC
Confidence 011 23455577777777654332 1111 11111 1 001 245567777765444
Q ss_pred CccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEeeeccCCCCCCCCCCC
Q 043079 201 PFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIAETGWPSKGDSSQVGV 280 (460)
Q Consensus 201 p~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~a 280 (460)
| +|--=||. +.. .-.. .+.+..+|+++.--+++|.|||--=-....... ..
T Consensus 203 p---------------IdgIG~Q~---H~~--------~~~~--~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~ 253 (320)
T PF00331_consen 203 P---------------IDGIGLQS---HFD--------AGYP--PEQIWNALDRFASLGLPIHITELDVRDDDNPPD-AE 253 (320)
T ss_dssp C---------------S-EEEEEE---EEE--------TTSS--HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HH
T ss_pred c---------------cceechhh---ccC--------CCCC--HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-hH
Confidence 3 22111221 111 1111 445555666665567999999964333322110 23
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCC-CCCCCCCCcceeccCCCCCee
Q 043079 281 DSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNED-LKQGPTCERNFGLFHPNMTPV 342 (460)
Q Consensus 281 s~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~-~K~G~~~E~~wGlf~~d~~~k 342 (460)
..+.++.+++.+++.+.+. | +..-..+.+..+.|.. |.+.. .-.+=+||+.|.+||
T Consensus 254 ~~~~qA~~~~~~~~~~~~~---~--~~~v~git~Wg~~D~~sW~~~~-~~~~~~lfd~~~~~K 310 (320)
T PF00331_consen 254 EEEAQAEYYRDFLTACFSH---P--PAAVEGITWWGFTDGYSWRPDT-PPDRPLLFDEDYQPK 310 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T--HCTEEEEEESSSBTTGSTTGGH-SEG--SSB-TTSBB-
T ss_pred HHHHHHHHHHHHHHHHHhC---C--ccCCCEEEEECCCCCCcccCCC-CCCCCeeECCCcCCC
Confidence 4667888999999988763 1 0002234445566643 55431 123347899999887
No 54
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=32.09 E-value=59 Score=31.03 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhh-hHHHHHhhcCCCccccCC-CCCCCCCCC
Q 043079 139 PAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLK-PLLSFLRATKSPFLINPY-PFFGCSPET 216 (460)
Q Consensus 139 ~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~-~~ldfL~~~~sp~~vNiy-Pyf~~~~~~ 216 (460)
.+++.+.+.+...|+.| |++.+.... +..+ ++... ++++.+.+.+-|+++++- +.+..
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~-------------~~~~--~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~---- 144 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGG-------------FDPD--DPRLDDPIFEAAEELGLPVLIHTGMTGFPD---- 144 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETT-------------CCTT--SGHCHHHHHHHHHHHT-EEEEEESHTHHHH----
T ss_pred hHHHHHHHhccccceee-eEecCCCCc-------------cccc--cHHHHHHHHHHHHhhccceeeeccccchhh----
Confidence 57778888888888876 887654321 1111 12344 899999998888888742 00000
Q ss_pred cccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEeeeccC
Q 043079 217 LDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIAETGWP 270 (460)
Q Consensus 217 ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETGWP 270 (460)
...-..+...+...+++ ||+++||+.+.|+|
T Consensus 145 ---------------------~~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 145 ---------------------APSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp ---------------------HHHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred ---------------------hhHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 00111222223334444 89999999999999
No 55
>PRK09989 hypothetical protein; Provisional
Probab=32.03 E-value=4.7e+02 Score=25.22 Aligned_cols=120 Identities=8% Similarity=0.088 Sum_probs=64.9
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEc---cCCh-HHHHHHHhCCCeEEE-eeCCCCc-------ccc-cCHH
Q 043079 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLF---DADP-KMIRAFAHTGIAVTV-TVPNDQI-------PYL-TKLN 97 (460)
Q Consensus 31 ~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY---~~d~-~vL~A~~~tgi~v~v-Gv~n~~l-------~~~-~~~~ 97 (460)
..+|......++ |-.+.++.+ +..|++.|-+. +.+. ++.+.++++||+|.. +.+..++ ... ....
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~-~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAA-RKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREH 81 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHH-HHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHH
Confidence 456777776665 466888888 88999999984 3343 566778899999886 3221111 111 2223
Q ss_pred HHHHHHHhccccC--CCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCC
Q 043079 98 FAEQWLKNNIQPY--TPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSL 153 (460)
Q Consensus 98 ~a~~wv~~nv~~~--~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl 153 (460)
.+.+.++..|.-. +... +..|..|.-.-..........++..++.+-......|.
T Consensus 82 ~~~~~l~~~i~~A~~lg~~-~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 138 (258)
T PRK09989 82 EARADIDLALEYALALNCE-QVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK 138 (258)
T ss_pred HHHHHHHHHHHHHHHhCcC-EEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334444433211 2222 22344553110011112245577777777776666664
No 56
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=31.63 E-value=3.3e+02 Score=27.87 Aligned_cols=79 Identities=8% Similarity=0.063 Sum_probs=40.5
Q ss_pred HHHHh--CCCeEEEeeCC--C---Ccccc-cCHHHHHHHHHhccccCCCCccEEEEEeccccccc--cchhhHHHHHHHH
Q 043079 72 RAFAH--TGIAVTVTVPN--D---QIPYL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILST--ASKLLIASLVPAM 141 (460)
Q Consensus 72 ~A~~~--tgi~v~vGv~n--~---~l~~~-~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~--~~~~~~~~Lv~am 141 (460)
.+++. .++||++.|.. . ....+ ++++....+++. |..++..-.+.+|-+==|-... ........++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34453 58999988843 2 22334 444333333322 2222221234444442232211 1122356789999
Q ss_pred HHHHHHHhhC
Q 043079 142 QTLHTALVGV 151 (460)
Q Consensus 142 ~~v~~aL~~~ 151 (460)
+.+|++|.+.
T Consensus 141 ~~lr~~l~~~ 150 (362)
T cd02872 141 KELREAFEPE 150 (362)
T ss_pred HHHHHHHHhh
Confidence 9999999987
No 57
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.43 E-value=1.3e+02 Score=32.48 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCCCCEEE-------Ecc-----CCh-------HHHHHHHhCCCeEEEeeCCCCcc
Q 043079 45 PTHVAHFLLESTIINRVR-------LFD-----ADP-------KMIRAFAHTGIAVTVTVPNDQIP 91 (460)
Q Consensus 45 ~~~vv~ll~k~~~~~~VR-------iY~-----~d~-------~vL~A~~~tgi~v~vGv~n~~l~ 91 (460)
-++.++|| |..|++.-| |+= .|+ +++.+|.+.||+.+|.+.--+++
T Consensus 55 y~eDi~L~-~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 55 YPVDLELA-EEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHH-HHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 35678888 888876655 442 132 68899999999999999865555
No 58
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=30.85 E-value=3.5e+02 Score=29.68 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=52.9
Q ss_pred HHHH-hCCCeEEEeeCC--------CCc---ccc-c---CH--HHHHHHHHhccccCCC-CccEEEEEecccccccc---
Q 043079 72 RAFA-HTGIAVTVTVPN--------DQI---PYL-T---KL--NFAEQWLKNNIQPYTP-ATNIVRIFVGNEILSTA--- 129 (460)
Q Consensus 72 ~A~~-~tgi~v~vGv~n--------~~l---~~~-~---~~--~~a~~wv~~nv~~~~~-~~~I~~I~VGNEvl~~~--- 129 (460)
+|++ +.+|+|+..-|. ..+ ..+ . +. ++=..++.+-|+.|-. +..|-+|.+.||+....
T Consensus 161 ~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 161 EALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp HHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT
T ss_pred HHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCC
Confidence 4444 557999999873 222 122 1 11 2223455666666632 57899999999998631
Q ss_pred ---c--hhhHHHHHHHHHH-HHHHHhhCCCCCceEEec
Q 043079 130 ---S--KLLIASLVPAMQT-LHTALVGVSLDRRIQVST 161 (460)
Q Consensus 130 ---~--~~~~~~Lv~am~~-v~~aL~~~gl~~~IkVsT 161 (460)
+ .-+++++...|++ +.-+|++++++..+|+-.
T Consensus 241 ~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 241 YPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 1136677778876 999999999855577643
No 59
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=30.12 E-value=1.2e+02 Score=32.95 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=42.6
Q ss_pred ceEEEeeeccCCCCCCCCCC-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCccee
Q 043079 260 VEIVIAETGWPSKGDSSQVG-----VDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERNFG 333 (460)
Q Consensus 260 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~wG 333 (460)
+||+|||-|........+.+ -=++--+.+++.+.+.+. ..|-+. .-+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v-----~GY~~WSl~DnfEw~~G-~y~~RfG 441 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDL-----MGYTPWGCIDCVSFTTG-QYSKRYG 441 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchhhhcccCC-CccCccc
Confidence 57999999998644221111 112333445555554442 124332 34667777773 35555 5899999
Q ss_pred ccCCCCC
Q 043079 334 LFHPNMT 340 (460)
Q Consensus 334 lf~~d~~ 340 (460)
|++.|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9987655
No 60
>PRK07198 hypothetical protein; Validated
Probab=30.10 E-value=43 Score=35.47 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCEE-EEccCChHHHHHHHhCCCeEEEeeC
Q 043079 49 AHFLLESTIINRV-RLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 49 v~ll~k~~~~~~V-RiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
.|+| +.+|+++| |+.+.++.-+.++.+.||+|.=-|+
T Consensus 338 AQIL-rdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVL-HWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHH-HHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 5777 88999999 9999999999999999999995554
No 61
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=30.02 E-value=5.9e+02 Score=25.70 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHhCCCeEEEeeCCCCccc-ccCHHHHHHHHHhccccCCCCccEEEEEecccccccc--chhhHHHHHHHHHHHHHH
Q 043079 71 IRAFAHTGIAVTVTVPNDQIPY-LTKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTA--SKLLIASLVPAMQTLHTA 147 (460)
Q Consensus 71 L~A~~~tgi~v~vGv~n~~l~~-~~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~--~~~~~~~Lv~am~~v~~a 147 (460)
++.++..|+||+|.|.-..-.. +.+...++ -+.+++..++..-.+.+|=+==|--... .......++..|+.+|++
T Consensus 66 i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~-~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~ 144 (312)
T cd02871 66 IKALQAKGKKVLISIGGANGHVDLNHTAQED-NFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDH 144 (312)
T ss_pred HHHHHHCCCEEEEEEeCCCCccccCCHHHHH-HHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHH
Confidence 4567778999999886432222 23333222 2333333333222455555544432111 112346789999999988
Q ss_pred Hh
Q 043079 148 LV 149 (460)
Q Consensus 148 L~ 149 (460)
|.
T Consensus 145 ~~ 146 (312)
T cd02871 145 YG 146 (312)
T ss_pred cC
Confidence 74
No 62
>PRK12359 flavodoxin FldB; Provisional
Probab=29.03 E-value=4.8e+02 Score=24.28 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=61.5
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeCCCCcccccCHHHHHHHHHhcccc-
Q 043079 31 IGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQP- 109 (460)
Q Consensus 31 ~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~- 109 (460)
++|=|+....| .+.|++.|++..+...+++.+....-...+.+.. -|++|.|......+ +.....++.. +..
T Consensus 3 i~I~Y~S~TGN---Te~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD-~iIlG~pTw~~Gel--~~d~~~~~~~-l~~~ 75 (172)
T PRK12359 3 IGLFYGSSTCY---TEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYD-VLILGIPTWDFGEI--QEDWEAVWDQ-LDDL 75 (172)
T ss_pred EEEEEECCCCH---HHHHHHHHHHHhCCCeEEEEEcccCChhHHccCC-EEEEEecccCCCcC--cHHHHHHHHH-HhhC
Confidence 68888887655 2567777744456556788876543333444433 68899886433333 1222222212 222
Q ss_pred CCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCC
Q 043079 110 YTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSL 153 (460)
Q Consensus 110 ~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl 153 (460)
.+.+-+|...-.|+.. .....-..+|+.+++.|++.|-
T Consensus 76 dl~gK~vAlFG~Gd~~------~y~~~f~~a~~~l~~~l~~~Ga 113 (172)
T PRK12359 76 NLEGKIVALYGMGDQL------GYGEWFLDALGMLHDKLAPKGV 113 (172)
T ss_pred CCCCCEEEEEeCCCCc------cchHHHHHHHHHHHHHHHhCCC
Confidence 1233333333333321 2456678899999999988763
No 63
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=28.82 E-value=1.1e+02 Score=26.75 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHHhCCCeEEE
Q 043079 46 THVAHFLLESTIINRVRLF--D--------AD---PKMIRAFAHTGIAVTV 83 (460)
Q Consensus 46 ~~vv~ll~k~~~~~~VRiY--~--------~d---~~vL~A~~~tgi~v~v 83 (460)
+++.+.. +.+|++.|+++ . .. ..+|++|+..||+|..
T Consensus 53 ~~~~~~~-~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKA-KERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHH-HHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 3445555 67899988877 3 33 3789999999999763
No 64
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=28.80 E-value=1.3e+02 Score=29.34 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCeEEEeeCCCCcc---cc-cCHHHHHHHHHhccccCCCCccEEEEEeccccccccchhhHHHHHHHHHHH
Q 043079 69 KMIRAFAHTGIAVTVTVPNDQIP---YL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTL 144 (460)
Q Consensus 69 ~vL~A~~~tgi~v~vGv~n~~l~---~~-~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v 144 (460)
..+++++..|+||++.|.+.... .+ .++...+.++++ |..++..-.+.+|-+==|-... .....+..|+.+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~----~~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV----TFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc----cHhHHHHHHHHH
Confidence 45667777899999988654322 23 454443444333 2222222234455443343221 134577789999
Q ss_pred HHHHhhCCC
Q 043079 145 HTALVGVSL 153 (460)
Q Consensus 145 ~~aL~~~gl 153 (460)
|++|.+.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987664
No 65
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=27.92 E-value=96 Score=24.36 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHHhccccCCCCccEEEEEeccccccccc--hhhHHHHHHHHHHHHHHHhhC
Q 043079 97 NFAEQWLKNNIQPYTPATNIVRIFVGNEILSTAS--KLLIASLVPAMQTLHTALVGV 151 (460)
Q Consensus 97 ~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~--~~~~~~Lv~am~~v~~aL~~~ 151 (460)
..-..|+++||.- |+|.++.++ ...-..|+|+++..++.++..
T Consensus 11 ~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 11 EILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4456899998763 444555432 233567999999999887653
No 66
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=27.89 E-value=4.7e+02 Score=31.38 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=58.1
Q ss_pred eeEEecCCCCC---CCChHHH---HHHHHhcCCCCEEEEcc--CChHHHHHHHhCCCeEEEeeCCC--C------cccc-
Q 043079 31 IGVNYGTVANN---LPPPTHV---AHFLLESTIINRVRLFD--ADPKMIRAFAHTGIAVTVTVPND--Q------IPYL- 93 (460)
Q Consensus 31 ~GvnYg~~~~n---~ps~~~v---v~ll~k~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~--~------l~~~- 93 (460)
.|+|+-..... ..+++.+ ++++ |..|++.||+-. .++..+.++-..||-|+.-++.+ . ...+
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lm-K~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLM-KQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHH-HHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 48886433221 2355554 4566 889999999863 34678999999999988754211 0 0112
Q ss_pred cCH---HHHHHHHHhccccCCCCccEEEEEecccccc
Q 043079 94 TKL---NFAEQWLKNNIQPYTPATNIVRIFVGNEILS 127 (460)
Q Consensus 94 ~~~---~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~ 127 (460)
.++ ++..+-++..|....-.-.|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 222 1223335556666543456888889999743
No 67
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.17 E-value=1.3e+02 Score=26.68 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeC
Q 043079 47 HVAHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 47 ~vv~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 86 (460)
.+.++| +.+|++.|=+-..-+..+++|++.||+|..+-.
T Consensus 56 ~~a~~l-~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELL-VDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHH-HHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578899 899999998888889999999999999999977
No 68
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.53 E-value=1.2e+02 Score=29.11 Aligned_cols=39 Identities=31% Similarity=0.458 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHHhCCCeEEEeeCCC
Q 043079 49 AHFLLESTIINRVRLFDADPKMIRAFAHTGIAVTVTVPND 88 (460)
Q Consensus 49 v~ll~k~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~ 88 (460)
+|+| +..||++||+-..+|.-..++.+.||+|.=-++..
T Consensus 133 AqIL-~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQIL-KDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHH-HHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 5677 88999999999999999999999999999888754
No 69
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=24.52 E-value=1.5e+02 Score=26.75 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCEEEEc--c--------CCh---HHHHHHHhCCCeEEE
Q 043079 46 THVAHFLLESTIINRVRLF--D--------ADP---KMIRAFAHTGIAVTV 83 (460)
Q Consensus 46 ~~vv~ll~k~~~~~~VRiY--~--------~d~---~vL~A~~~tgi~v~v 83 (460)
+++.+.+ +.+|++.|+++ + ..+ .+|++|+..||+|..
T Consensus 60 e~~~~~~-~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDA-KEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHH-HHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 3445555 77899988887 3 333 689999999999753
No 70
>PLN03059 beta-galactosidase; Provisional
Probab=24.43 E-value=6.8e+02 Score=29.42 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHhhhhcccCCceeEEecCCC---C-----------CC--CChH---HHHHHHHhcCCCCEEEEccC-
Q 043079 7 PLPTFTILLLVVVSISLIHGSEGSIGVNYGTVA---N-----------NL--PPPT---HVAHFLLESTIINRVRLFDA- 66 (460)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~---~-----------n~--ps~~---~vv~ll~k~~~~~~VRiY~~- 66 (460)
.|..|.+++||||+++.=... ....|.|.... + .. .+|+ +..+.+ |..|++.|-+|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~-Ka~GlNtV~tYV~W 82 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSH-GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKA-KDGGLDVIQTYVFW 82 (840)
T ss_pred ceehhhHHHHHHHhhhhhhcc-ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHH-HHcCCCeEEEEecc
Confidence 456677777777776651111 12356666331 1 01 2344 345556 8899999999832
Q ss_pred -----C------------hHHHHHHHhCCCeEEEee---------------CCCCccc--c--cCH---HHHHHHHHhcc
Q 043079 67 -----D------------PKMIRAFAHTGIAVTVTV---------------PNDQIPY--L--TKL---NFAEQWLKNNI 107 (460)
Q Consensus 67 -----d------------~~vL~A~~~tgi~v~vGv---------------~n~~l~~--~--~~~---~~a~~wv~~nv 107 (460)
. ..-|+.+++.||.|+|=. |.-..+. + .++ ++.+.|+..-+
T Consensus 83 n~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~ 162 (840)
T PLN03059 83 NGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIV 162 (840)
T ss_pred cccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHH
Confidence 1 145677789999999743 2111121 2 222 34566765532
Q ss_pred cc-----C-C-CCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccc
Q 043079 108 QP-----Y-T-PATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPH 163 (460)
Q Consensus 108 ~~-----~-~-~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~ 163 (460)
.. . + .+..|..+=|-||-=.- ....-..--.+|+.+++.++++|++ |+.-|.+
T Consensus 163 ~~l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~d 222 (840)
T PLN03059 163 DMMKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWVMCK 222 (840)
T ss_pred HHHhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceEECC
Confidence 21 1 1 24689999999994211 0000012256899999999999975 5665554
No 71
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.28 E-value=6.2e+02 Score=26.93 Aligned_cols=60 Identities=8% Similarity=0.153 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCC
Q 043079 133 LIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGC 212 (460)
Q Consensus 133 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~ 212 (460)
..+....+++.+|+++. .+.++|. ++. ++| | + .+..+...++|+.+.+ +-.+++|+|--.
T Consensus 280 ~~~~~~~~i~~lr~~~~------~i~i~~d----~Iv-G~P---g----E-T~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 280 TREYYLELVEKIKSNIP------DVAITTD----IIV-GFP---G----E-TEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred CHHHHHHHHHHHHHhCC------CCEEEEE----EEE-ECC---C----C-CHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 46677788888877632 2444432 222 244 1 1 1246778899987653 456777777654
No 72
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.26 E-value=6.7e+02 Score=24.09 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=54.4
Q ss_pred ChHHHHHHHHhcCCCCEEEEccCC---hHHHHHHHh--CCCeEEEeeCCCCcccccCHHHHHHHHHhccccCCCCccEEE
Q 043079 44 PPTHVAHFLLESTIINRVRLFDAD---PKMIRAFAH--TGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQPYTPATNIVR 118 (460)
Q Consensus 44 s~~~vv~ll~k~~~~~~VRiY~~d---~~vL~A~~~--tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~~~~~~~I~~ 118 (460)
+++++.+.+ ..|.+.|++|-++ ++.|+++++ .+++++.- . .+ +.+.+.+|++. .+..
T Consensus 118 T~~E~~~A~--~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~at-G--GI----~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 118 TVTEIVTAL--EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVT-G--GV----NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CHHHHHHHH--HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEE-C--CC----CHHHHHHHHHC---------CCcE
Confidence 788888777 4889999999655 467777774 23665521 1 11 24556677765 3558
Q ss_pred EEeccccccccchhhHHHHHHHHHHHHHHHh
Q 043079 119 IFVGNEILSTASKLLIASLVPAMQTLHTALV 149 (460)
Q Consensus 119 I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~ 149 (460)
|.||+..+.......++.+-...++++++++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8899877543211124555556666665554
No 73
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.01 E-value=1.4e+02 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHHhCCCeEEE
Q 043079 48 VAHFLLESTIINRVRLF--DAD---PKMIRAFAHTGIAVTV 83 (460)
Q Consensus 48 vv~ll~k~~~~~~VRiY--~~d---~~vL~A~~~tgi~v~v 83 (460)
+.+.+ +..|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 52 ~~~~~-~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 52 IAKKA-KELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHH-HCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHH-HHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34555 67899988888 333 3789999999998764
No 74
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.85 E-value=6.9e+02 Score=24.06 Aligned_cols=118 Identities=13% Similarity=0.081 Sum_probs=62.3
Q ss_pred EEecCCCCCCCChHHHHHHHHhcCCCCEEEEccC---Ch-HHHHHHHhCCCeEEE-eeCCCCcc------cc--cCHHHH
Q 043079 33 VNYGTVANNLPPPTHVAHFLLESTIINRVRLFDA---DP-KMIRAFAHTGIAVTV-TVPNDQIP------YL--TKLNFA 99 (460)
Q Consensus 33 vnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~---d~-~vL~A~~~tgi~v~v-Gv~n~~l~------~~--~~~~~a 99 (460)
+|.+..-.++ +.++.++.+ +..|++.|-++.. ++ ++.+.++.+||++.. +++..+.. .+ .+.+..
T Consensus 6 ~~~~~~~~~~-~l~~~l~~~-a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09997 6 ANLSMLFGEY-DFLARFEKA-AQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEF 83 (258)
T ss_pred eeeehhccCC-CHHHHHHHH-HHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHH
Confidence 4444444444 357778888 8899999998754 33 566777899999975 33332211 01 122222
Q ss_pred HHHHHhcccc--CCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCC
Q 043079 100 EQWLKNNIQP--YTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSL 153 (460)
Q Consensus 100 ~~wv~~nv~~--~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl 153 (460)
.+.+++.|.- .+....| .+..|.-.-..........+...|+.+-...++.|+
T Consensus 84 ~~~~~~~i~~a~~lga~~i-~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKI-NCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334443321 1222223 344554110000122345677777777766666664
No 75
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.68 E-value=5.7e+02 Score=24.38 Aligned_cols=99 Identities=14% Similarity=0.267 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhcCCCCEEEEc-c-CC--hHHHHHHHhCCCeEEEeeCCCCcccccCHHHHHHHHHhccccCCCC-ccEEE
Q 043079 44 PPTHVAHFLLESTIINRVRLF-D-AD--PKMIRAFAHTGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQPYTPA-TNIVR 118 (460)
Q Consensus 44 s~~~vv~ll~k~~~~~~VRiY-~-~d--~~vL~A~~~tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~~~~~-~~I~~ 118 (460)
.|.+.++.+ +..|.+.|=+- . .+ .++|+.++..|+++-|.+..... + ..+.+|++. +.|.-
T Consensus 68 ~P~~~i~~~-~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~--~-----------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEF-AEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETP--V-----------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHH-HHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G-----------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHH-HhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCC--c-----------hHHHHHhhhcCEEEE
Confidence 466777777 55565655332 1 22 26889999999999888864321 1 114455543 22222
Q ss_pred EEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEE
Q 043079 119 IFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQV 159 (460)
Q Consensus 119 I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkV 159 (460)
.+| |+=. +++.+.+..+..|+.+|+.+.+.|++-.|.|
T Consensus 134 MsV--~PG~-~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGF-GGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTT-SSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCC-CcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 222 2211 2355678899999999999999887544433
No 76
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.55 E-value=8.6e+02 Score=25.76 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=42.3
Q ss_pred EEEEecccccccc------chhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhh
Q 043079 117 VRIFVGNEILSTA------SKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKP 190 (460)
Q Consensus 117 ~~I~VGNEvl~~~------~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ 190 (460)
.++.+|=|-.... -.....+...+++.+|+.+. .+.|+|.. +. +|| | + .+..+..
T Consensus 251 ~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~------~i~i~~d~----Iv-GfP---g----E-T~edf~~ 311 (434)
T PRK14330 251 KSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVP------DASISSDI----IV-GFP---T----E-TEEDFME 311 (434)
T ss_pred CceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CCEEEEEE----EE-ECC---C----C-CHHHHHH
Confidence 4566665543321 01245677778888777521 25555542 21 344 1 1 1246788
Q ss_pred HHHHHhhcCCCccccCCCCCCC
Q 043079 191 LLSFLRATKSPFLINPYPFFGC 212 (460)
Q Consensus 191 ~ldfL~~~~sp~~vNiyPyf~~ 212 (460)
.++|+.+.+ +-.+++++|-.+
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 999998754 445677777665
No 77
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.44 E-value=5.1e+02 Score=24.44 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhCCCCceEEEee-eccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 043079 241 LDGQLDAVFSAMKLLGFDDVEIVIAE-TGWPSKGDSS-QVGVDSQSAADYNMNLMRHVTS 298 (460)
Q Consensus 241 fda~~Da~~~a~~k~g~~~~~vvVtE-TGWPS~G~~~-~~~as~~na~~y~~~lv~~~~s 298 (460)
|-..++.++..+. .++|++||++.| .++|.. ..+ ......+..+...+..++.+++
T Consensus 76 ~~~~~~~fv~~iR-~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 76 FRERLDGFVKTIR-EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHHHHHH-TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554 368999999999 555555 333 3457777778888888888754
No 78
>CHL00041 rps11 ribosomal protein S11
Probab=22.43 E-value=1.8e+02 Score=25.41 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHHhCCCeEE
Q 043079 48 VAHFLLESTIINRVRLF--DAD---PKMIRAFAHTGIAVT 82 (460)
Q Consensus 48 vv~ll~k~~~~~~VRiY--~~d---~~vL~A~~~tgi~v~ 82 (460)
+.+.+ +..|++.|+++ +.. ..+|++|+..||+|.
T Consensus 65 ~~~~~-~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 65 AIRTV-IDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHH-HHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 44555 67899988888 332 378999999999875
No 79
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.42 E-value=1.4e+02 Score=24.92 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCC
Q 043079 132 LLIASLVPAMQTLHTALVGVSLD 154 (460)
Q Consensus 132 ~~~~~Lv~am~~v~~aL~~~gl~ 154 (460)
....+.-.+++||++.|+++|.+
T Consensus 26 ~~~~Q~~~~~~nl~~~L~~~G~~ 48 (105)
T cd06150 26 DITGQTRQVLAKIDALLAEAGSD 48 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999864
No 80
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=22.31 E-value=2.5e+02 Score=30.83 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=98.0
Q ss_pred HHHHHhccccCCCCccEEEEEeccccccccchhhHHHHHHHHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccc
Q 043079 100 EQWLKNNIQPYTPATNIVRIFVGNEILSTASKLLIASLVPAMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKF 179 (460)
Q Consensus 100 ~~wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f 179 (460)
...|..-|.+|--+..|-+-..-||.+-+. +.+...++...+.+.+-++..+-+.-|.|+-+.+. |.. |-|-.+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~-p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r~ 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEA-PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNARF 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccc-cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCCcccce
Confidence 356666677775556677788889976653 23567788888888888887776544544443332 322 32334444
Q ss_pred cCCccchhhhhHHHHHhhcCCCccccCCCCCCCCCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCC
Q 043079 180 HQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDD 259 (460)
Q Consensus 180 ~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~ 259 (460)
..|. -.-++||+|.. ++ |+... ..| +...+|-. ..+ +-
T Consensus 199 ~vDy------------------a~~hLY~hyd~---sl-~~r~s-----------~~y---g~~~l~i~----~~~--g~ 236 (587)
T COG3934 199 YVDY------------------AANHLYRHYDT---SL-VSRVS-----------TVY---GKPYLDIP----TIM--GW 236 (587)
T ss_pred eecc------------------ccchhhhhccC---Ch-hheee-----------eee---cchhhccc----hhc--cc
Confidence 3332 24688987764 11 22111 001 11111100 111 24
Q ss_pred ceEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccCCC--CCCC--CCCcceecc
Q 043079 260 VEIVIAETGWPSKGDSSQVGVDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNEDL--KQGP--TCERNFGLF 335 (460)
Q Consensus 260 ~~vvVtETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE~~--K~G~--~~E~~wGlf 335 (460)
++|+.-|-|-|++=+.. |.+.|.-. +..+....| .+--.+-|+=|-+-- .|+. .-|-.|||.
T Consensus 237 ~pV~leefGfsta~g~e-------~s~ayfiw-~~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~fgiI 302 (587)
T COG3934 237 QPVNLEEFGFSTAFGQE-------NSPAYFIW-IRLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEFGII 302 (587)
T ss_pred ceeeccccCCccccccc-------ccchhhhh-hhhHHhhcC------CceEEEEecCCccCCCCCCCccccccceeeee
Confidence 89999999999974432 22222111 111222111 112234444443211 1221 357789999
Q ss_pred CCCCCeeeee
Q 043079 336 HPNMTPVYDV 345 (460)
Q Consensus 336 ~~d~~~ky~l 345 (460)
+.|+.+|+..
T Consensus 303 radgpek~~a 312 (587)
T COG3934 303 RADGPEKIDA 312 (587)
T ss_pred cCCCchhhhH
Confidence 9999999854
No 81
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.24 E-value=2.2e+02 Score=25.41 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=31.6
Q ss_pred ChHHHHHHHHhcCCCCEEEEccC---------------------C--hHHHHHHHhCCCeEEEeeC
Q 043079 44 PPTHVAHFLLESTIINRVRLFDA---------------------D--PKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 44 s~~~vv~ll~k~~~~~~VRiY~~---------------------d--~~vL~A~~~tgi~v~vGv~ 86 (460)
+|+++++.| |..+++.|-+|.- | .++++|+++.||+|++-+.
T Consensus 1 D~~~~~~~l-k~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTL-KEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHH-HHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 367778888 7777777777532 1 3678999999999998875
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.94 E-value=55 Score=27.68 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=7.5
Q ss_pred cchHHHHHHHHHHHHhh
Q 043079 6 IPLPTFTILLLVVVSIS 22 (460)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (460)
++|+.++|++||++++.
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 83
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.92 E-value=2.2e+02 Score=30.89 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=43.1
Q ss_pred ceEEEeeeccCCCCCCCCCC-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEcccC-CCCCCCCCCccee
Q 043079 260 VEIVIAETGWPSKGDSSQVG-----VDSQSAADYNMNLMRHVTSGNGTPLMPNRTFETYIFALFNE-DLKQGPTCERNFG 333 (460)
Q Consensus 260 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~lv~~~~s~~GtP~rp~~~i~~yiF~lFDE-~~K~G~~~E~~wG 333 (460)
+||+|||-|..........+ -=++--+.+++.+.+.+. ..|-+. .-+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v-----~GY~~WSl~Dn~EW~~G-~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVEL-----LGYTTWGCIDLVSAGTG-EMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchHhhcccCC-CccCeec
Confidence 58999999997654321111 113334555555555542 134332 24667777773 25454 4889999
Q ss_pred ccCCCCC
Q 043079 334 LFHPNMT 340 (460)
Q Consensus 334 lf~~d~~ 340 (460)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9988765
No 84
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.70 E-value=7.4e+02 Score=24.06 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred CChHHHHHHHHhcCCCCEEEEccCCh--------HHHHHHHh-CCCeEEEeeCCCCcccccCHHHHHHHHHhccccCCCC
Q 043079 43 PPPTHVAHFLLESTIINRVRLFDADP--------KMIRAFAH-TGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQPYTPA 113 (460)
Q Consensus 43 ps~~~vv~ll~k~~~~~~VRiY~~d~--------~vL~A~~~-tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~~~~~ 113 (460)
.+|-++++.+ +..|++.+=+.|.|. ++++.++. .-..|.+|=.. .+.+.++.|+...
T Consensus 30 ~dP~~~a~~~-~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGI------rs~e~~~~~l~~G------- 95 (232)
T PRK13586 30 GNPIEIASKL-YNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGI------RDIEKAKRLLSLD------- 95 (232)
T ss_pred CCHHHHHHHH-HHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCc------CCHHHHHHHHHCC-------
Confidence 3788899999 778999999998763 67777765 44588886442 2345566666542
Q ss_pred ccEEEEEeccccccc
Q 043079 114 TNIVRIFVGNEILST 128 (460)
Q Consensus 114 ~~I~~I~VGNEvl~~ 128 (460)
+..|+||+|.+.+
T Consensus 96 --a~kvvigt~a~~~ 108 (232)
T PRK13586 96 --VNALVFSTIVFTN 108 (232)
T ss_pred --CCEEEECchhhCC
Confidence 3457999999875
No 85
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=21.47 E-value=4.7e+02 Score=28.21 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC--ceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCC
Q 043079 134 IASLVPAMQTLHTALVGVSLDR--RIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFG 211 (460)
Q Consensus 134 ~~~Lv~am~~v~~aL~~~gl~~--~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~ 211 (460)
.+..+-.|+.||++|-+++..+ +...|++. |++......+....|.+.|||+. +=-|=|+.
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~----------~as~~~l~~~~~~~~~~~vDyiN-------iMTYDf~G 255 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRHYQLTIAA----------PASKDKLEGLNHAEIAQYVDYIN-------IMTYDFHG 255 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEEec----------CCchhhhhcccHHHHHHHHhhhh-------eeeeeccc
Q ss_pred C--CCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEe
Q 043079 212 C--SPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265 (460)
Q Consensus 212 ~--~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVt 265 (460)
. ...--.-|||....-..-..++..++..++-. |-+...+.. +.+--+|+|+
T Consensus 256 ~Wn~~~Gh~a~Ly~~~~d~~~~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~klvlG 309 (441)
T COG3325 256 AWNETLGHHAALYGTPKDPPLANGGFYVDAEVDGI-DWLEEGFAG-DVPPSKLVLG 309 (441)
T ss_pred ccccccccccccccCCCCCccccCCeeEEEEechh-HHHHhhhcc-CCCCceEEee
No 86
>PHA02754 hypothetical protein; Provisional
Probab=21.31 E-value=72 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhCCC-CCceEEecc
Q 043079 136 SLVPAMQTLHTALVGVSL-DRRIQVSTP 162 (460)
Q Consensus 136 ~Lv~am~~v~~aL~~~gl-~~~IkVsT~ 162 (460)
..-.+|+++|..|.++|. -++||+-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 456799999999999993 345666443
No 87
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.30 E-value=3.2e+02 Score=27.56 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCCCceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCCCCCCccc
Q 043079 140 AMQTLHTALVGVSLDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGCSPETLDY 219 (460)
Q Consensus 140 am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~~~~~ldy 219 (460)
+...++.+.++.|+-+ +++..... .+.|+ ++.+.++.++..+.+-|+.++.=+.... ..++.
T Consensus 114 a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~---------~~~~~pi~~~a~~~gvpv~ihtG~~~~~--~~~~~ 175 (293)
T COG2159 114 AAEELERRVRELGFVG-VKLHPVAQ------GFYPD---------DPRLYPIYEAAEELGVPVVIHTGAGPGG--AGLEK 175 (293)
T ss_pred HHHHHHHHHHhcCceE-EEeccccc------CCCCC---------ChHHHHHHHHHHHcCCCEEEEeCCCCCC--ccccc
Confidence 5566777777777654 55532211 11111 1457899999999999999976444332 11110
Q ss_pred ccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEeeec--cCCCC
Q 043079 220 ALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIAETG--WPSKG 273 (460)
Q Consensus 220 A~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVtETG--WPS~G 273 (460)
.. .++ ..+|-+ ..+ ||+++||+++.| +|.--
T Consensus 176 ~~-------~~p-----------~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~ 208 (293)
T COG2159 176 GH-------SDP-----------LYLDDV---ARK--FPELKIVLGHMGEDYPWEL 208 (293)
T ss_pred CC-------CCc-----------hHHHHH---HHH--CCCCcEEEEecCCCCchhH
Confidence 00 000 123322 233 899999999999 88754
No 88
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.04 E-value=1.8e+02 Score=28.27 Aligned_cols=80 Identities=21% Similarity=0.454 Sum_probs=48.0
Q ss_pred cCCceeEEecCCCCCCCChHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHHhC--CCeEEEeeCCCCcccccCHHHH
Q 043079 27 SEGSIGVNYGTVANNLPPPTHVAHFLLESTIINRVRLFDAD-----PKMIRAFAHT--GIAVTVTVPNDQIPYLTKLNFA 99 (460)
Q Consensus 27 ~~~~~GvnYg~~~~n~ps~~~vv~ll~k~~~~~~VRiY~~d-----~~vL~A~~~t--gi~v~vGv~n~~l~~~~~~~~a 99 (460)
..+.|||.|=...-.++. .--+++|||+- ..+.++.... |+=++.-|-|+ .+-...
T Consensus 41 ~~sTiGIDFk~kti~l~g------------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne-----~Sfeni 103 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG------------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE-----KSFENI 103 (207)
T ss_pred ccceEEEEEEEEEEEeCC------------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch-----HHHHHH
Confidence 345678877655434333 12467889875 3677776543 55555555543 233445
Q ss_pred HHHHHhccccCCCCccEEEEEecccc
Q 043079 100 EQWLKNNIQPYTPATNIVRIFVGNEI 125 (460)
Q Consensus 100 ~~wv~~nv~~~~~~~~I~~I~VGNEv 125 (460)
..|++. |..+.+. .+.-|.|||-.
T Consensus 104 ~~W~~~-I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 104 RNWIKN-IDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHHHH-HHhhCCC-CCcEEEeeccc
Confidence 567654 6666554 68899999965
No 89
>PLN00196 alpha-amylase; Provisional
Probab=21.00 E-value=3.3e+02 Score=29.16 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=35.9
Q ss_pred ceeEEecCCCCCCCChHHH---HHHHHhcCCCCEE-----------------EEccCC-h---------HHHHHHHhCCC
Q 043079 30 SIGVNYGTVANNLPPPTHV---AHFLLESTIINRV-----------------RLFDAD-P---------KMIRAFAHTGI 79 (460)
Q Consensus 30 ~~GvnYg~~~~n~ps~~~v---v~ll~k~~~~~~V-----------------RiY~~d-~---------~vL~A~~~tgi 79 (460)
..|++|-....+.-.-..+ +.-| +..||+.| +.|+.| + ++++++.+.||
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL-~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GI 106 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDI-AAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGV 106 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHH-HHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCC
Confidence 3699985532221122233 3445 77788776 456555 2 46788889999
Q ss_pred eEEEee-CCC
Q 043079 80 AVTVTV-PND 88 (460)
Q Consensus 80 ~v~vGv-~n~ 88 (460)
+|++-+ .|.
T Consensus 107 kVilDvV~NH 116 (428)
T PLN00196 107 QVIADIVINH 116 (428)
T ss_pred EEEEEECccC
Confidence 999985 454
No 90
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.98 E-value=7.7e+02 Score=23.90 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=49.1
Q ss_pred CChHHHHHHHHhc-CCCCEEEEccCCh---------HHHHHHH-hCCCeEEEeeCCCCcccccCHHHHHHHHHhccccCC
Q 043079 43 PPPTHVAHFLLES-TIINRVRLFDADP---------KMIRAFA-HTGIAVTVTVPNDQIPYLTKLNFAEQWLKNNIQPYT 111 (460)
Q Consensus 43 ps~~~vv~ll~k~-~~~~~VRiY~~d~---------~vL~A~~-~tgi~v~vGv~n~~l~~~~~~~~a~~wv~~nv~~~~ 111 (460)
.+|.++++.+ .. .|++.+=+.|.|. +++..++ ..+++|.+|=... +.+.++.++..
T Consensus 31 ~dp~~~a~~~-~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr------s~e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYY-SQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR------TKSQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHH-HhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC------CHHHHHHHHHC------
Confidence 4777888888 55 6899999998762 5777765 5789999985532 33455555542
Q ss_pred CCccEEEEEeccccccc
Q 043079 112 PATNIVRIFVGNEILST 128 (460)
Q Consensus 112 ~~~~I~~I~VGNEvl~~ 128 (460)
-+..|+||+|.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 23457899999865
No 91
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.92 E-value=1.1e+02 Score=32.71 Aligned_cols=21 Identities=5% Similarity=0.060 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 043079 134 IASLVPAMQTLHTALVGVSLD 154 (460)
Q Consensus 134 ~~~Lv~am~~v~~aL~~~gl~ 154 (460)
....+..++.+.+.|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 345677778889999999984
No 92
>PRK05309 30S ribosomal protein S11; Validated
Probab=20.66 E-value=2e+02 Score=25.56 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHHhCCCeEE
Q 043079 48 VAHFLLESTIINRVRLF--DAD---PKMIRAFAHTGIAVT 82 (460)
Q Consensus 48 vv~ll~k~~~~~~VRiY--~~d---~~vL~A~~~tgi~v~ 82 (460)
+.+.+ +..|++.|+++ +.. ..+|.+|+..|++|.
T Consensus 69 ~~~~~-~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 69 AAKKA-KEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHH-HHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 44555 67899999998 333 378999999999865
No 93
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=20.13 E-value=3.9e+02 Score=27.06 Aligned_cols=166 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHH--hCCCeEEEeeCC----CCcccc-cCHHHHHHHHHhccccCCCCccEEEEEeccccccc-------cchhhHHH
Q 043079 71 IRAFA--HTGIAVTVTVPN----DQIPYL-TKLNFAEQWLKNNIQPYTPATNIVRIFVGNEILST-------ASKLLIAS 136 (460)
Q Consensus 71 L~A~~--~tgi~v~vGv~n----~~l~~~-~~~~~a~~wv~~nv~~~~~~~~I~~I~VGNEvl~~-------~~~~~~~~ 136 (460)
+.+++ +.++||++.|.. .....+ +++..-+..+++ +..++..-.+.+|-+==|-... ........
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~s-iv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~ 153 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADS-AVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKEN 153 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHH-HHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHH
Q ss_pred HHHHHHHHHHHHhhCC----CCCceEEeccccccccccCCCCCCccccCCccchhhhhHHHHHhhcCCCccccCCCCCCC
Q 043079 137 LVPAMQTLHTALVGVS----LDRRIQVSTPHSLGILSSSSPPSSGKFHQGYDIHVLKPLLSFLRATKSPFLINPYPFFGC 212 (460)
Q Consensus 137 Lv~am~~v~~aL~~~g----l~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~~ldfL~~~~sp~~vNiyPyf~~ 212 (460)
++..|+.+|++|.+.+ .+-.+.+..+.....+..... +.|.+.+||+. +-.|=|...
T Consensus 154 ~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~------------~~l~~~vD~vn-------lMtYD~~g~ 214 (322)
T cd06548 154 FTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEV------------AEIAKYLDFIN-------LMTYDFHGA 214 (322)
T ss_pred HHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCH------------HHHhhcCCEEE-------EEEeeccCC
Q ss_pred CCCCcccccccCCCceecCCCCceecchhHHHHHHHHHHHHHhCCCCceEEEe
Q 043079 213 SPETLDYALFRPNSGVFDENTKIVYTNMLDGQLDAVFSAMKLLGFDDVEIVIA 265 (460)
Q Consensus 213 ~~~~ldyA~f~~~~~~~d~~~~~~Y~n~fda~~Da~~~a~~k~g~~~~~vvVt 265 (460)
+...++...+--.......-.-.++.....+.+.|.+.-+|+++
T Consensus 215 ---------w~~~~g~~spL~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 258 (322)
T cd06548 215 ---------WSNTTGHHSNLYASPADPPGGYSVDAAVNYYLSAGVPPEKLVLG 258 (322)
T ss_pred ---------CCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEE
No 94
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.10 E-value=5.1e+02 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=18.6
Q ss_pred CCEEEEcc---------CChHHHHHHHhCCCeEEEeeC
Q 043079 58 INRVRLFD---------ADPKMIRAFAHTGIAVTVTVP 86 (460)
Q Consensus 58 ~~~VRiY~---------~d~~vL~A~~~tgi~v~vGv~ 86 (460)
+.++|+.. .+.+.++.++++|..+.|++-
T Consensus 168 v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~ 205 (321)
T TIGR03822 168 VKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALH 205 (321)
T ss_pred ccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEec
Confidence 55667753 234667777777777777664
Done!