BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043080
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1
PE=2 SV=2
Length = 410
Score = 301 bits (770), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 237/408 (58%), Gaps = 34/408 (8%)
Query: 11 ADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS 70
+ +E D+F CCVCLELLYKP+VL+CGH+SCFWCV+ +MN + ES+CP+CR+PY HFPS
Sbjct: 15 SQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHFPS 74
Query: 71 ICHLLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQVGYNLFGSPTNKEVDILGKSLDS 130
+C L+FLLKK+YPL ++KRE QV +EE++ FSPQ+ L S + G SL+
Sbjct: 75 VCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQIDLVLDLSVCS------GDSLNV 128
Query: 131 PSQQQIKLYSESRFSGEGKSSPCMKSLEMTAESGDDAMLKLVTSSECSEATANSTAQECG 190
+Q+++ + S L ++ GD + + E ++A A + +
Sbjct: 129 SDKQKVE-----------ECSNAANLLSSSSSRGDIPCIP--KNQEPTDAKALNVHENEL 175
Query: 191 LVGNDLEHKAENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCL--FVPEDGNFKCPNC 248
L N K +S DDL C+ACK++L +PVVLNCGHV+CE C+ E KC C
Sbjct: 176 LKDN----KVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQEC 231
Query: 249 QSLQPYGLPSVCLIIEHFLEERFSDLYAER----KEALLKQTSGATQARHRKNRSASFPK 304
P G P VCLI+E LEE F + Y R ++ L + G Q+ ++ S S
Sbjct: 232 NVCDPRGFPKVCLILEQLLEENFPEEYNSRSSKVQKTLAHNSKGNIQSYLKEGPSLSNDN 291
Query: 305 LVYASLWLGN-GPKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPG 363
WL N G +HFG GCD CG+ PIIG+RY+CKDC E IG+DLC+ C+ P+KVPG
Sbjct: 292 -NNDDPWLANPGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPG 350
Query: 364 RFNQQHKPEHKFEIMQPTSLSDLINRIN---SDMSDDEGSDATENRDG 408
RFNQQH P+H+ E+ + + N I + +EG D E +G
Sbjct: 351 RFNQQHTPDHRLELARSPQVLINFNSIGILLGPVISNEGMDTDEGEEG 398
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPS------V 259
DL C+ C ++ ++PV CGH FC CL D N KCP C+ + LPS V
Sbjct: 456 ASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNV 515
Query: 260 CL--IIEHFLEERFSD---LYAERKEAL 282
L +I FL E F + LY E E L
Sbjct: 516 ILEELIATFLPEEFKERKRLYEEEMEEL 543
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH-FPSICH-- 73
+ + +C +C+ L Y+PV CGH C C+ ++ H + CP+C++ PS +
Sbjct: 456 ASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLD--HNAKCPLCKDVLLQCLPSRKYSK 513
Query: 74 --LLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
+L L+ P +++R+R EE ++L + + V
Sbjct: 514 NVILEELIATFLPEEFKERKRLYEEEMEELSNLNKNV 550
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 201 ENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNC 248
E W D C C L PV L CGH FC+LCL + +C C
Sbjct: 152 EVW---DGFKCKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALC 196
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAM---------NSWHESNCPV 60
L D C +CL+ ++ PV L+CGHI C+ C +A ++ +S CP+
Sbjct: 205 LFDSMRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPL 264
Query: 61 CRNPYNHFPSICHL--LHFLLKKLYPLTYEKRERQVAEEEKQLG--HFSPQ 107
CR FP+ HL L+ LL P +EKR + E +L H+ Q
Sbjct: 265 CRQA-GVFPNAVHLDELNMLLSYSCPEYWEKRIQMERVERVRLAKEHWESQ 314
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC 234
L+C+ C +F PV L+CGH++C LC
Sbjct: 215 LTCSICLDTVFDPVALSCGHIYCYLC 240
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAM---------NSWHESNCPV 60
L D C +CL+ ++ PV L+CGHI C+ C +A ++ +S CP+
Sbjct: 205 LFDSMRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPL 264
Query: 61 CRNPYNHFPSICHL--LHFLLKKLYPLTYEKRERQVAEEEKQLG--HFSPQ 107
CR FP+ HL L+ LL P +EKR + E +L H+ Q
Sbjct: 265 CRQA-GVFPNAVHLDELNMLLSYSCPEYWEKRIQMERVERVRLAKEHWESQ 314
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC 234
L+C+ C +F PV L+CGH++C LC
Sbjct: 215 LTCSICLDTVFDPVALSCGHIYCYLC 240
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEH-- 265
+L C C ML+ PVV CGH FC CL + +CP C+ +GLPS +++EH
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR----FGLPSP-VVLEHAK 220
Query: 266 ------FLEERFSDLYAERKEA 281
FL + + D + ER+++
Sbjct: 221 SHSITTFLRDFYPDNWLERQKS 242
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 3 AEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCR 62
AE +E +E S E +C +C +LY PVV CGH C C+ A+ CP CR
Sbjct: 150 AEFLHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALT--QSPQCPTCR 207
Query: 63 ----NPYNHFPSICHLLHFLLKKLYPLTYEKRERQVAEEEKQ 100
+P + H + L+ YP + +R++ EE++Q
Sbjct: 208 FGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQKSWEEEKEQ 249
>sp|Q9NZS9|BFAR_HUMAN Bifunctional apoptosis regulator OS=Homo sapiens GN=BFAR PE=1 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCE--LCLFVPEDGNFKCPNCQSLQPYGLPSVCL 261
+SV + SC C +L P LNCGH FC L L+ +CP C+ + G P V +
Sbjct: 27 ISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECRE-KWEGFPKVSI 85
Query: 262 IIEHFLEERFSDLYAERKE 280
++ +E+ F D R E
Sbjct: 86 LLRDAIEKLFPDAIRLRFE 104
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLLHFL 78
EF C C ++L P L CGH C C+ S ++ CP CR + FP + LL
Sbjct: 31 EFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPKVSILLRDA 90
Query: 79 LKKLYP 84
++KL+P
Sbjct: 91 IEKLFP 96
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 316 PKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEAC----HNNPAKVPGRFNQ 367
P IH GV CD C M PI G R+KC++C + FD CE C +N GR N+
Sbjct: 2700 PSIHPGVTCDGCQMFPINGSRFKCRNCDD---FDFCETCFKTKKHNTRHTFGRINE 2752
>sp|Q8R079|BFAR_MOUSE Bifunctional apoptosis regulator OS=Mus musculus GN=Bfar PE=1
SV=1
Length = 450
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 2 EAEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVC 61
+ EEH + + + EF C C + L P L CGH C C+ S ++ CP C
Sbjct: 14 QEEEHPVRSSGPQISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPEC 73
Query: 62 RNPYNHFPSICHLLHFLLKKLYP 84
R + FP + LL ++KL+P
Sbjct: 74 REKWEGFPKVNILLRDAIEKLFP 96
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCE--LCLFVPEDGNFKCPNCQSLQPYGLPSVCL 261
+SV + SC C L P LNCGH FC L L+ +CP C+ + G P V +
Sbjct: 27 ISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECRE-KWEGFPKVNI 85
Query: 262 IIEHFLEERFSDLYAERKEALLKQTSGATQA 292
++ +E+ F D R E ++Q + Q+
Sbjct: 86 LLRDAIEKLFPDAIRMRVED-IQQNNDVVQS 115
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS-----ICH 73
+F+C +C+ L ++PV CGH C C+ ++ H CP+C+ + + +
Sbjct: 476 DFECSLCMRLFFEPVTTPCGHSFCKNCLERCLD--HAPYCPLCKESLKEYLADRRYCVTQ 533
Query: 74 LLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
LL L+ K P +R++ EE +L H + V
Sbjct: 534 LLEELIVKYLPDELSERKKIYDEETAELSHLTKNV 568
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 201 ENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNC-QSLQPYGLPS- 258
E + V D C+ C ++ F+PV CGH FC+ CL D CP C +SL+ Y
Sbjct: 469 EELIDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRR 528
Query: 259 --VCLIIEHFLEERFSDLYAERKEALLKQTS 287
V ++E + + D +ERK+ ++T+
Sbjct: 529 YCVTQLLEELIVKYLPDELSERKKIYDEETA 559
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS-----ICH 73
+F+C +C+ LL++PV CGH C C+ ++ H +CP+C++ + + I
Sbjct: 446 DFECALCMRLLFEPVTTPCGHTFCLKCLERCLD--HAPHCPLCKDKLSELLASRNFNITV 503
Query: 74 LLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
L L+ + P R+R EE +L + + V
Sbjct: 504 LAEELIFRYLPDELSDRKRIYDEEMSELSNLTRDV 538
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPS----V 259
+ V D CA C ++LF+PV CGH FC CL D CP C+ L S +
Sbjct: 442 LDVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNI 501
Query: 260 CLIIEHFLEERFSDLYAERK 279
++ E + D ++RK
Sbjct: 502 TVLAEELIFRYLPDELSDRK 521
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCL 235
D L C C+++L KPV L CG C+ C+
Sbjct: 139 DLLGCPRCRRLLHKPVTLPCGLTVCKRCV 167
>sp|Q5PQN2|BFAR_RAT Bifunctional apoptosis regulator OS=Rattus norvegicus GN=Bfar PE=2
SV=1
Length = 450
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCE--LCLFVPEDGNFKCPNCQSLQPYGLPSVCL 261
+SV + SC C L P LNCGH FC L L+ +CP C+ + G P V +
Sbjct: 27 ISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECRE-KWEGFPKVNI 85
Query: 262 IIEHFLEERFSDLYAERKEALLKQTSGATQA 292
++ +E+ F D R E ++Q + Q+
Sbjct: 86 LLRDAIEKLFPDAIKMRVED-IQQNNDVVQS 115
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 2 EAEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVC 61
+ E+H + + + EF C C + L P L CGH C C+ S ++ CP C
Sbjct: 14 QEEDHPVRSSGPQISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPEC 73
Query: 62 RNPYNHFPSICHLLHFLLKKLYP 84
R + FP + LL ++KL+P
Sbjct: 74 REKWEGFPKVNILLRDAIEKLFP 96
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 319 HFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFE 376
H G CD CG+ PI G R+ C+DC + D C++C + P + HK +H+ E
Sbjct: 825 HVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHET-----DIHKEDHQLE 877
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 318 IHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEAC 354
IH V CD CG++P+IG RYKC C FDLC+ C
Sbjct: 121 IHDSVQCDGCGLAPLIGFRYKCVQCS---NFDLCQKC 154
>sp|A6NCK2|TR43B_HUMAN Tripartite motif-containing protein 43B OS=Homo sapiens GN=TRIM43B
PE=3 SV=3
Length = 446
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHE----SNCPVCRNPYNHFPS 70
AF E C +CL L PV + CGH C C+ SW E +NCP CR P P
Sbjct: 8 AFQKELTCVICLNYLVDPVTICCGHSFCRPCL---CLSWEEAQSPANCPACREPS---PK 61
Query: 71 ICHLLHFLLKKLYPLTYEKRERQVAEEEKQL 101
+ + LLK L + + Q EKQ+
Sbjct: 62 MDFKTNILLKNLVTIARKASLWQFLSSEKQI 92
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 208 DLSCAACKKMLFKPVVLNCGHVFCELCL---FVPEDGNFKCPNCQSLQP 253
+L+C C L PV + CGH FC CL + CP C+ P
Sbjct: 12 ELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPSP 60
>sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=Homo sapiens GN=TRIM43
PE=2 SV=1
Length = 446
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHE----SNCPVCRNPYNHFPS 70
AF E C +CL L PV + CGH C C+ SW E +NCP CR P P
Sbjct: 8 AFQKELTCVICLNYLVDPVTICCGHSFCRPCL---CLSWEEAQSPANCPACREPS---PK 61
Query: 71 ICHLLHFLLKKLYPLTYEKRERQVAEEEKQL 101
+ + LLK L + + Q EKQ+
Sbjct: 62 MDFKTNILLKNLVTIARKASLWQFLSSEKQI 92
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 208 DLSCAACKKMLFKPVVLNCGHVFCELCL---FVPEDGNFKCPNCQSLQP 253
+L+C C L PV + CGH FC CL + CP C+ P
Sbjct: 12 ELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPSP 60
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67
E E KC +CL L V L+C H+ C C+ +M ++ CPVC+ PY+
Sbjct: 8 ERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMK--MDATCPVCKIPYHR 59
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQ 249
+L C C + V L+C HVFC C+ + CP C+
Sbjct: 13 ELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK 54
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQ 249
DL CA C ++ ++PV CGH FC CL D N KCP C+
Sbjct: 421 ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCK 464
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH-----FPSI 71
+ + +C +C+ L Y+PV CGH C C+ ++ H + CP+C++ + S
Sbjct: 421 ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLD--HNAKCPLCKDGLSQCLASRKYSK 478
Query: 72 CHLLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
++ L+ K P ++R + EE ++L + + V
Sbjct: 479 NVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNV 515
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNC 248
D C C L PV L+CGH FC+LCL + +C C
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC 195
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 20 FKCCVCLELLYKPVVLACGHISCFWCVYNAMN--------SWHESNCPVCRN 63
F C +CL+ + PVV CGH+ C+ C+Y ++ H++NCPVC++
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93
>sp|P14199|REF2P_DROME Protein ref(2)P OS=Drosophila melanogaster GN=ref(2)P PE=1 SV=2
Length = 599
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 318 IHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEAC 354
IH V CD CG++P+IG RYKC C +DLC+ C
Sbjct: 121 IHDAVECDGCGLAPLIGFRYKCVQCS---NYDLCQKC 154
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQ 249
DL CA C ++ ++PV CGH FC CL D N KCP C+
Sbjct: 462 ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCK 505
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH-----FPSI 71
+ + +C +C+ L Y+PV CGH C C+ ++ H + CP+C++ + S
Sbjct: 462 ASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLD--HNAKCPLCKDGLSQCLASRKYSK 519
Query: 72 CHLLHFLLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
++ L+ K P ++R + EE ++L + + V
Sbjct: 520 NVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNV 556
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNC 248
D C C L PV L+CGH FC+LCL + +C C
Sbjct: 154 DGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALC 195
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 316 PKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEAC----HNNPAKVPGRFNQ 367
P IH GV CD C PI G R+KC++C + FD CE C +N GR N+
Sbjct: 2701 PSIHPGVTCDGCQTFPINGSRFKCRNCDD---FDFCETCFKTKKHNTRHTFGRINE 2753
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 196 LEHKAENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGN-FKCPNCQSLQPY 254
LE + + + V CA C ++L +PV CGHVFC C+ N + CP C++ P
Sbjct: 22 LERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPS 81
Query: 255 -GLPSV 259
G+P+
Sbjct: 82 EGVPAT 87
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 11 ADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAM--NSWHESNCPVCR 62
D E F C VCLE+L++PV CGH+ C C+ ++ N W CP CR
Sbjct: 26 GDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW---TCPYCR 76
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 168 MLKLVTSSECSEATANSTAQECGLVGNDLEHKAENWVSVDDLSCAACKKMLFKPVVLNCG 227
M ++++ A A++TA+ LE + + + V CA C ++L +PV CG
Sbjct: 1 MGSVLSTDSGKSAPASATARA-------LERRRDPELPVTSFDCAVCLEVLHQPVRTRCG 53
Query: 228 HVFCELCLFVPEDGN-FKCPNCQSLQPY-GLPSV 259
HVFC C+ N + CP C++ P G+P+
Sbjct: 54 HVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPAT 87
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAM--NSWHESNCPVCR 62
D E F C VCLE+L++PV CGH+ C C+ ++ N W CP CR
Sbjct: 27 DPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW---TCPYCR 76
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 11 ADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCR 62
D E F C VCLE+L++PV CGH+ C C+ ++ + ++ CP CR
Sbjct: 26 GDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCR 77
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 196 LEHKAENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLF--VPEDGNFKCPNCQSLQP 253
LE ++ + + C+ C ++L +PV CGHVFC C+ + + + CP C++ P
Sbjct: 22 LERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYLP 81
Query: 254 Y-GLPSV 259
G+P+
Sbjct: 82 SEGVPAT 88
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 319 HFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEAC 354
H G CD CG+ PI G R+ C+DC + D C++C
Sbjct: 818 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSC 853
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 203 WVSVDDLSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDGN-----FKCPNCQ 249
W+S DDLSC C+ +L +P L CGH FC C L+V + G + CP C+
Sbjct: 13 WLSEDDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICR 67
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHES------NCPVCRN 63
D+ C +C LL +P L CGH C C+++ S + CP+CR
Sbjct: 17 DDLSCIICQGLLDQPTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRK 68
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 2 EAEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVC 61
EAE+ +D + KC +CL P CGH+ C+ C+ N E CP+C
Sbjct: 307 EAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQE--CPLC 364
Query: 62 RNPYNHFPSIC 72
R P H +C
Sbjct: 365 RTPNTHSSLVC 375
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 193 GNDLEHKAE--NWVSVDDLS------CAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFK 244
GN + +AE NW + D S C C P CGHVFC C+ + +
Sbjct: 301 GNLITSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQE 360
Query: 245 CPNCQS 250
CP C++
Sbjct: 361 CPLCRT 366
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 22 CCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESN------CPVCRNPYNHFP----SI 71
C +C + ++ P++ CGH C+ C +N+W SN CP CR+ P ++
Sbjct: 30 CSICHDYMFVPMMTPCGHNYCYGC----LNTWFASNTQKELACPQCRSDITTIPALNTTL 85
Query: 72 CHLLHFLLKKL 82
L F+L+KL
Sbjct: 86 QQYLSFILEKL 96
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGN----FKCPNCQSLQPYGLPSVCL 261
++ L C+ C +F P++ CGH +C CL N CP C+S +P++
Sbjct: 25 IESLVCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRS-DITTIPALNT 83
Query: 262 IIEHFLE---ERFSDLYAER-KEALLKQTSGATQARHRKNRSASFPKLVYAS 309
++ +L E+ D E K+ L +T ++ K + F K+ S
Sbjct: 84 TLQQYLSFILEKLRDQNDESFKKLLTTKTKEENDYKNDKEKDTLFDKVFKNS 135
>sp|Q3TL54|TR43A_MOUSE Tripartite motif-containing protein 43A OS=Mus musculus GN=Trim43a
PE=2 SV=1
Length = 445
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVP-EDGNF--KCPNCQSLQPYG 255
+ L+C+ C+ + PV L CGH FCE CL + ED F CP C +QP+
Sbjct: 12 ETLTCSICQSIFMNPVYLRCGHKFCEACLLLSQEDIKFPAYCPMC--MQPFN 61
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRNPYN 66
+ C +C + PV L CGH C C+ + + CP+C P+N
Sbjct: 12 ETLTCSICQSIFMNPVYLRCGHKFCEACLLLSQEDIKFPAYCPMCMQPFN 61
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLL-HF 77
+F C +C++++ + ACGH C+ C+ + + +S+CP C H+ + +L +F
Sbjct: 44 DFLCPICMQIIKDAFLTACGHSFCYMCIITHLRN--KSDCPCC----GHYLTNSNLFPNF 97
Query: 78 LLKKLYPLTYEKRERQVAEEEKQLGHFSPQV 108
LL KL T +RQ+++ + HF V
Sbjct: 98 LLDKLLKKT---SDRQISKTASPVEHFRQAV 125
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPYNH 67
+E C +CLELL +P+ L CGH C C+ +M E +CPVCR Y H
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF------VPEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ CL +P++G CP C+
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|P86448|TR43B_MOUSE Tripartite motif-containing protein 43B OS=Mus musculus GN=Trim43b
PE=2 SV=1
Length = 445
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFV-PEDGNF--KCPNCQSLQPYG 255
+ L+C+ C+ + PV L CGH FCE CL + ED F CP C +QP+
Sbjct: 12 ETLTCSICQGIFMNPVYLKCGHKFCEACLLLFQEDIKFPAYCPMC--MQPFN 61
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPYNH 67
+E C +CLELL +P+ L CGH C C+ +M E +CPVCR Y H
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF------VPEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ CL +P++G CP C+
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPYN 66
+ +E C +CLELL +P+ L CGH C C+ +M E +CP+CR PY
Sbjct: 8 SIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQ 63
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF------VPEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ C+ + G CP C+
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCR 59
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPYNH 67
+E C +CLELL +P+ L CGH C C+ +M E +CPVCR Y H
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF------VPEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ CL +P++G CP C+
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6
PE=2 SV=1
Length = 488
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVY-NAMNSWH----ESNCPVCRNPYN 66
DE C +CLELL +P+ + CGH C C+ N+ NS S+CPVCR Y
Sbjct: 9 IRDEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQ 64
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF-------VPEDGNFKCPNCQ-SLQPYGL 256
D+++C C ++L +P+ ++CGH FC++C+ + G CP C+ S QP L
Sbjct: 11 DEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPGNL 68
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPYN 66
+ +E C +CLELL +P+ L CGH C C+ +M E +CP+CR PY
Sbjct: 8 SIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQ 63
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLF------VPEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ C+ + G CP C+
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCR 59
>sp|Q7ZUK0|RN146_DANRE E3 ubiquitin-protein ligase rnf146 OS=Danio rerio GN=rnf146 PE=2
SV=1
Length = 364
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 22 CCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRN 63
C +CL+ PV L C HI CF CV A SWH C +CR
Sbjct: 42 CPICLQSCVHPVRLPCRHIFCFLCVKGA--SWHSKRCALCRR 81
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 191 LVGNDLEHKAENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDG-NFKCP 246
+ G L W++ DDL C C+ +L P L CGH FC C L+ D + CP
Sbjct: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
Query: 247 NCQ 249
C+
Sbjct: 61 TCR 63
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 18 DEFKCCVCLELLYKPVVLACGHISCFWC---VYNAMNSWHESNCPVCRNPYNHFPSICHL 74
D+ C +C LL P L CGH C C ++ A ++ CP CR P HL
Sbjct: 17 DDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDA-RRWACPTCRQGAAQQP---HL 72
Query: 75 LHFLLKKLYPLTYEKRERQV 94
L + Y + R++
Sbjct: 73 RKNTLLQDLADKYRRAAREI 92
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCR 62
F++E C +C+EL PV++ACGH C C+ A CP CR
Sbjct: 139 FAEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECR 185
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG--NFKCPNCQ 249
++L+C C ++ PV++ CGH FC C+ +G +F CP C+
Sbjct: 140 AEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECR 185
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 20 FKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLLHFLL 79
+C +C E L +P CGH C+ C+ N + +CP CR PS +L++ ++
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLK--ESKSCPTCRQKLYTQPSPAYLVYEIM 140
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFL 267
L C C + L +P +CGH +C CL + CP C+ + Y PS ++ +
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQ-KLYTQPSPAYLVYEIM 140
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRN 63
A +C +CLEL+ +PV C HI C +C+ +N S CP+C+N
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDGNFKCPNCQSLQPYGLPSVCLIIEH 265
L C C +++ +PV C H+FC+ C L + G +CP C++ I +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN----------DITKR 71
Query: 266 FLEE--RFSDLYAE 277
L+E RFS L E
Sbjct: 72 SLQESTRFSQLVEE 85
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRN 63
A +C +CLEL+ +PV C HI C +C+ +N S CP+C+N
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKN 66
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDGNFKCPNCQSLQPYGLPSVCLIIEH 265
L C C +++ +PV C H+FC+ C L G +CP C++ I +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKN----------DITKR 71
Query: 266 FLEE--RFSDLYAE 277
L+E RFS L E
Sbjct: 72 SLQESTRFSQLVEE 85
>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RAD18 PE=3 SV=1
Length = 344
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELCL-FVPEDGNFKCPNC----QSLQPYGLPSVCLII 263
L C CK+ P++ CGH FC LC+ + + +CP C Q Q +V ++
Sbjct: 26 LRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQRCPTCMQEQQISQLRKNVTVETLV 85
Query: 264 EHFLEERFSDLYAERKEA 281
EHF +R + L ++ A
Sbjct: 86 EHFSAQRATILRVVKEAA 103
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 20 FKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVC 61
+C +C E P++ CGH C C+ + + CP C
Sbjct: 26 LRCHICKEFFTAPMITGCGHTFCSLCIQRYLTN-TSQRCPTC 66
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFE 376
CD C ++PI G+R+ C +C + FDLC C+ NP K H +H F+
Sbjct: 3230 SCDLCNINPITGKRWNCSNCGD---FDLCNQCYQNPEK-------DHPKDHIFK 3273
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRN 63
A +C +CLEL+ +PV C HI C +C+ +N S CP+C+N
Sbjct: 17 AMQKILECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDGNFKCPNCQS 250
L C C +++ +PV C H+FC+ C L + G +CP C++
Sbjct: 22 LECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
>sp|P15533|TR30A_MOUSE Tripartite motif-containing protein 30A OS=Mus musculus
GN=Trim30a PE=1 SV=2
Length = 496
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVY----NAMNSWHESNCPVCRNPY 65
E +E C +CLELL +PV C H C C+ + N+ + NCPVCR PY
Sbjct: 7 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 62
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFV------PEDGNFKCPNCQSLQPYG 255
++++C C ++L +PV +C H FC C+ + DG CP C+ P+G
Sbjct: 11 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 65
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCL---FVPEDGNFKCPNCQSL-----QPYGLP 257
++LSC+ C ++ +PV CGH FC CL +V + ++CP C+ + Q
Sbjct: 8 AEELSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVRPQLQKNT 67
Query: 258 SVCLIIEHFLE 268
+C ++E FL+
Sbjct: 68 VMCAVVEQFLQ 78
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHES----NCPVCRNPY 65
+A+ ++E C VCLEL +PV CGH C C+ +W CP CR Y
Sbjct: 1 MAELNPLAEELSCSVCLELFKEPVTTPCGHNFCMSCL---DETWVVQGPPYRCPQCRKVY 57
Query: 66 NHFPSI 71
P +
Sbjct: 58 QVRPQL 63
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66
+E C +CLELL +P+ L CGH C C+ E +CP+CR Y+
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCRVSYH 59
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFV--PEDGNFKCPNCQ 249
++++C C ++L +P+ L+CGH FC+ C+ E CP C+
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCR 55
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus
musculus GN=Brca1 PE=1 SV=3
Length = 1812
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRN 63
A +C +CLEL+ +PV C HI C +C+ +N S CP+C+N
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 209 LSCAACKKMLFKPVVLNCGHVFCELC---LFVPEDGNFKCPNCQ 249
L C C +++ +PV C H+FC+ C L + G +CP C+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,224,852
Number of Sequences: 539616
Number of extensions: 8272864
Number of successful extensions: 25669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 24143
Number of HSP's gapped (non-prelim): 1769
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)