Query 043080
Match_columns 458
No_of_seqs 482 out of 3717
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3039 Uncharacterized conser 99.3 5.2E-12 1.1E-16 115.7 8.3 108 150-257 162-274 (303)
2 PF15227 zf-C3HC4_4: zinc fing 99.3 2.1E-12 4.5E-17 88.7 2.8 40 22-61 1-42 (42)
3 PF15227 zf-C3HC4_4: zinc fing 99.1 1.6E-11 3.4E-16 84.3 1.9 38 211-248 1-42 (42)
4 cd02344 ZZ_HERC2 Zinc finger, 99.1 6.6E-11 1.4E-15 81.6 4.0 45 322-378 1-45 (45)
5 cd02334 ZZ_dystrophin Zinc fin 99.1 8.7E-11 1.9E-15 82.9 3.9 48 322-377 1-48 (49)
6 PLN03208 E3 ubiquitin-protein 99.1 1.1E-10 2.5E-15 105.3 5.2 66 1-67 1-80 (193)
7 smart00504 Ubox Modified RING 99.1 9.9E-11 2.2E-15 88.1 3.6 62 208-269 1-62 (63)
8 PF14835 zf-RING_6: zf-RING of 98.9 5.8E-10 1.3E-14 81.8 3.4 59 207-267 6-65 (65)
9 TIGR00599 rad18 DNA repair pro 98.9 8.6E-10 1.9E-14 111.2 5.8 68 205-272 23-90 (397)
10 cd02339 ZZ_Mind_bomb Zinc fing 98.9 1E-09 2.2E-14 76.1 4.1 44 322-377 1-44 (45)
11 TIGR00599 rad18 DNA repair pro 98.9 3E-09 6.4E-14 107.4 6.1 62 4-67 11-72 (397)
12 KOG0287 Postreplication repair 98.8 1.4E-09 3.1E-14 104.1 3.4 64 2-67 6-69 (442)
13 KOG0287 Postreplication repair 98.8 1.1E-09 2.5E-14 104.7 2.7 66 206-271 21-86 (442)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.4E-09 3.1E-14 73.5 2.3 38 22-61 1-39 (39)
15 PF04564 U-box: U-box domain; 98.8 2E-09 4.4E-14 83.4 3.5 65 207-271 3-68 (73)
16 cd02341 ZZ_ZZZ3 Zinc finger, Z 98.8 3.4E-09 7.5E-14 74.4 4.2 47 323-378 2-48 (48)
17 cd02338 ZZ_PCMF_like Zinc fing 98.8 2.9E-09 6.2E-14 75.6 3.9 48 322-377 1-48 (49)
18 smart00504 Ubox Modified RING 98.8 3.6E-09 7.9E-14 79.5 4.5 46 19-66 1-46 (63)
19 cd02340 ZZ_NBR1_like Zinc fing 98.8 4.7E-09 1E-13 72.2 3.8 43 322-378 1-43 (43)
20 cd02342 ZZ_UBA_plant Zinc fing 98.8 2.7E-09 5.9E-14 71.7 2.5 34 322-358 1-34 (43)
21 cd02345 ZZ_dah Zinc finger, ZZ 98.8 4.6E-09 1E-13 74.5 3.5 49 322-378 1-49 (49)
22 PF00097 zf-C3HC4: Zinc finger 98.8 3E-09 6.6E-14 72.7 2.4 40 22-61 1-41 (41)
23 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.8E-09 3.8E-14 73.1 1.1 38 211-248 1-39 (39)
24 PLN03208 E3 ubiquitin-protein 98.8 6.6E-09 1.4E-13 94.0 4.6 50 206-255 16-81 (193)
25 PF00569 ZZ: Zinc finger, ZZ t 98.7 2.2E-09 4.7E-14 75.2 0.6 38 318-358 1-38 (46)
26 KOG0823 Predicted E3 ubiquitin 98.7 6.9E-09 1.5E-13 95.5 3.0 52 17-68 45-97 (230)
27 KOG2660 Locus-specific chromos 98.7 1.4E-08 3E-13 98.0 5.2 89 12-102 8-102 (331)
28 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.8E-09 1.7E-13 74.0 2.3 46 19-66 2-48 (50)
29 PF13445 zf-RING_UBOX: RING-ty 98.7 7.3E-09 1.6E-13 71.1 1.6 37 22-59 1-43 (43)
30 PF13639 zf-RING_2: Ring finge 98.7 5.1E-09 1.1E-13 72.8 0.7 40 21-62 2-44 (44)
31 KOG0320 Predicted E3 ubiquitin 98.7 1.3E-08 2.8E-13 89.7 3.3 49 17-67 129-179 (187)
32 KOG0320 Predicted E3 ubiquitin 98.7 1.1E-08 2.5E-13 90.0 2.7 56 200-255 123-180 (187)
33 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.4E-09 1.6E-13 74.1 1.3 46 208-253 2-48 (50)
34 cd02343 ZZ_EF Zinc finger, ZZ 98.6 3.5E-08 7.6E-13 68.7 3.6 47 322-377 1-47 (48)
35 COG5432 RAD18 RING-finger-cont 98.6 2.5E-08 5.5E-13 93.7 3.4 74 206-279 23-96 (391)
36 cd02335 ZZ_ADA2 Zinc finger, Z 98.6 7.3E-08 1.6E-12 68.5 4.6 48 323-378 2-49 (49)
37 KOG0317 Predicted E3 ubiquitin 98.6 4.1E-08 8.9E-13 93.0 4.1 54 15-70 235-288 (293)
38 PF13639 zf-RING_2: Ring finge 98.6 9.5E-09 2.1E-13 71.5 -0.2 40 210-249 2-44 (44)
39 PHA02929 N1R/p28-like protein; 98.6 4.3E-08 9.3E-13 92.5 4.1 50 16-67 171-228 (238)
40 PF00097 zf-C3HC4: Zinc finger 98.5 2.8E-08 6.1E-13 67.9 1.3 38 211-248 1-41 (41)
41 KOG2177 Predicted E3 ubiquitin 98.5 8.8E-08 1.9E-12 94.3 5.3 65 204-270 9-73 (386)
42 PF14634 zf-RING_5: zinc-RING 98.5 9E-08 1.9E-12 66.5 3.4 41 210-250 1-44 (44)
43 PF04564 U-box: U-box domain; 98.5 8.6E-08 1.9E-12 74.3 3.7 49 18-67 3-51 (73)
44 COG5432 RAD18 RING-finger-cont 98.5 8.7E-08 1.9E-12 90.2 4.2 61 4-66 10-70 (391)
45 PF13445 zf-RING_UBOX: RING-ty 98.5 2.4E-08 5.3E-13 68.5 0.3 35 211-246 1-43 (43)
46 cd00162 RING RING-finger (Real 98.5 1.1E-07 2.4E-12 65.7 3.6 43 21-64 1-44 (45)
47 cd02249 ZZ Zinc finger, ZZ typ 98.5 1.4E-07 3.1E-12 66.1 4.2 45 323-378 2-46 (46)
48 PF14634 zf-RING_5: zinc-RING 98.5 1.3E-07 2.8E-12 65.7 3.6 41 21-63 1-44 (44)
49 KOG0317 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 90.3 3.1 56 201-256 232-287 (293)
50 PHA02926 zinc finger-like prot 98.4 1.6E-07 3.4E-12 85.9 4.1 55 12-66 163-230 (242)
51 KOG0823 Predicted E3 ubiquitin 98.4 7.7E-08 1.7E-12 88.6 2.1 50 206-255 45-97 (230)
52 PF14835 zf-RING_6: zf-RING of 98.4 4.7E-08 1E-12 71.8 0.2 49 14-66 2-51 (65)
53 smart00184 RING Ring finger. E 98.4 2.8E-07 6.1E-12 61.3 3.8 39 22-61 1-39 (39)
54 PHA02929 N1R/p28-like protein; 98.4 1.5E-07 3.2E-12 88.9 2.9 47 207-253 173-227 (238)
55 KOG0311 Predicted E3 ubiquitin 98.4 1E-07 2.2E-12 92.5 1.1 73 12-85 36-111 (381)
56 cd00162 RING RING-finger (Real 98.4 2.2E-07 4.7E-12 64.1 2.3 42 210-251 1-44 (45)
57 smart00291 ZnF_ZZ Zinc-binding 98.3 4.8E-07 1E-11 62.8 3.8 36 319-358 2-37 (44)
58 KOG0824 Predicted E3 ubiquitin 98.3 8.4E-08 1.8E-12 91.2 -0.7 48 20-68 8-55 (324)
59 KOG4159 Predicted E3 ubiquitin 98.3 4.5E-07 9.8E-12 91.8 3.9 72 15-88 80-157 (398)
60 KOG4582 Uncharacterized conser 98.3 6.5E-07 1.4E-11 87.2 4.7 61 314-377 140-209 (278)
61 smart00184 RING Ring finger. E 98.3 5.4E-07 1.2E-11 59.9 2.8 38 211-248 1-39 (39)
62 KOG4367 Predicted Zn-finger pr 98.3 9.3E-07 2E-11 87.6 4.9 31 206-236 2-32 (699)
63 KOG2177 Predicted E3 ubiquitin 98.2 4.4E-07 9.4E-12 89.4 2.5 50 12-63 6-55 (386)
64 KOG2164 Predicted E3 ubiquitin 98.2 4.5E-07 9.8E-12 92.3 2.4 49 19-67 186-237 (513)
65 KOG1280 Uncharacterized conser 98.2 4.9E-07 1.1E-11 87.4 2.3 60 318-385 5-64 (381)
66 COG5574 PEX10 RING-finger-cont 98.2 7.3E-07 1.6E-11 83.6 2.9 51 18-68 214-264 (271)
67 PHA02926 zinc finger-like prot 98.1 1.4E-06 3E-11 79.9 2.4 49 205-253 167-230 (242)
68 KOG2164 Predicted E3 ubiquitin 98.0 2E-06 4.4E-11 87.6 2.4 51 208-258 186-241 (513)
69 PF12678 zf-rbx1: RING-H2 zinc 98.0 3.1E-06 6.8E-11 65.5 2.9 40 21-62 21-73 (73)
70 TIGR00570 cdk7 CDK-activating 98.0 4.2E-06 9E-11 81.5 3.2 49 208-256 3-57 (309)
71 PF12678 zf-rbx1: RING-H2 zinc 97.9 5.1E-06 1.1E-10 64.3 2.5 40 210-249 21-73 (73)
72 KOG2660 Locus-specific chromos 97.9 5.3E-06 1.2E-10 80.3 3.2 69 207-275 14-87 (331)
73 COG5574 PEX10 RING-finger-cont 97.9 3.5E-06 7.7E-11 79.1 1.8 49 206-254 213-263 (271)
74 KOG0311 Predicted E3 ubiquitin 97.9 2E-06 4.4E-11 83.6 -0.1 69 205-273 40-111 (381)
75 COG5152 Uncharacterized conser 97.9 6.1E-06 1.3E-10 73.8 2.6 60 208-268 196-255 (259)
76 KOG0804 Cytoplasmic Zn-finger 97.9 1.5E-06 3.3E-11 86.8 -1.4 46 206-253 173-222 (493)
77 TIGR00570 cdk7 CDK-activating 97.9 1.8E-05 3.9E-10 77.1 6.0 48 19-67 3-55 (309)
78 COG5152 Uncharacterized conser 97.9 9.3E-06 2E-10 72.7 3.0 61 18-80 195-255 (259)
79 PF11789 zf-Nse: Zinc-finger o 97.8 7.9E-06 1.7E-10 59.8 1.6 45 16-60 8-53 (57)
80 KOG0978 E3 ubiquitin ligase in 97.8 6.7E-06 1.5E-10 87.8 0.8 52 206-257 641-693 (698)
81 KOG4159 Predicted E3 ubiquitin 97.8 1.8E-05 4E-10 80.2 3.8 74 206-279 82-160 (398)
82 cd02337 ZZ_CBP Zinc finger, ZZ 97.7 2.2E-05 4.7E-10 53.4 2.6 31 323-358 2-32 (41)
83 KOG0978 E3 ubiquitin ligase in 97.7 1E-05 2.2E-10 86.4 1.3 61 6-67 630-690 (698)
84 KOG1813 Predicted E3 ubiquitin 97.7 2E-05 4.4E-10 75.1 2.3 49 19-69 241-289 (313)
85 PF12861 zf-Apc11: Anaphase-pr 97.6 6.6E-05 1.4E-09 58.9 4.1 49 18-66 20-82 (85)
86 KOG4286 Dystrophin-like protei 97.6 2.5E-05 5.4E-10 82.4 1.8 51 321-379 603-653 (966)
87 KOG4628 Predicted E3 ubiquitin 97.6 3.7E-05 8E-10 76.1 2.6 46 20-66 230-278 (348)
88 KOG1813 Predicted E3 ubiquitin 97.5 7.6E-05 1.6E-09 71.2 2.9 56 208-264 241-296 (313)
89 COG5243 HRD1 HRD ubiquitin lig 97.4 9.6E-05 2.1E-09 72.4 2.8 47 17-65 285-344 (491)
90 KOG0802 E3 ubiquitin ligase [P 97.4 8.7E-05 1.9E-09 79.6 2.6 49 16-66 288-341 (543)
91 KOG2879 Predicted E3 ubiquitin 97.4 0.00012 2.5E-09 69.2 3.0 56 11-66 231-287 (298)
92 COG5243 HRD1 HRD ubiquitin lig 97.4 7.1E-05 1.5E-09 73.3 1.4 48 205-252 284-344 (491)
93 KOG0825 PHD Zn-finger protein 97.3 2.3E-05 5.1E-10 82.9 -2.3 48 207-254 122-172 (1134)
94 KOG4628 Predicted E3 ubiquitin 97.3 0.00012 2.5E-09 72.6 2.2 46 209-254 230-279 (348)
95 COG5540 RING-finger-containing 97.3 0.00014 3E-09 69.6 2.6 48 18-66 322-372 (374)
96 PF12861 zf-Apc11: Anaphase-pr 97.3 0.00023 5E-09 55.9 3.3 33 221-253 46-82 (85)
97 KOG0824 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 69.4 2.6 47 209-255 8-55 (324)
98 KOG2879 Predicted E3 ubiquitin 97.2 0.00022 4.9E-09 67.4 2.8 49 205-253 236-287 (298)
99 COG5540 RING-finger-containing 97.2 0.00017 3.8E-09 68.8 1.8 47 208-254 323-373 (374)
100 KOG0802 E3 ubiquitin ligase [P 97.2 0.00012 2.6E-09 78.5 0.7 47 206-252 289-340 (543)
101 PF11789 zf-Nse: Zinc-finger o 97.1 0.00021 4.5E-09 52.4 1.3 41 207-247 10-53 (57)
102 COG5222 Uncharacterized conser 97.1 0.00058 1.3E-08 65.1 4.6 64 19-94 274-338 (427)
103 KOG4172 Predicted E3 ubiquitin 97.0 0.00018 4E-09 50.8 0.3 46 20-66 8-54 (62)
104 KOG0825 PHD Zn-finger protein 96.9 0.00011 2.4E-09 78.0 -2.0 49 18-68 122-173 (1134)
105 KOG0297 TNF receptor-associate 96.7 0.00074 1.6E-08 69.3 1.8 52 14-67 16-68 (391)
106 smart00744 RINGv The RING-vari 96.7 0.0023 5E-08 45.3 3.7 42 21-62 1-49 (49)
107 COG5222 Uncharacterized conser 96.6 0.0021 4.4E-08 61.4 4.3 42 209-250 275-318 (427)
108 KOG0297 TNF receptor-associate 96.5 0.0019 4.1E-08 66.4 3.3 49 205-253 18-67 (391)
109 KOG1002 Nucleotide excision re 96.2 0.0035 7.5E-08 64.3 3.3 50 17-66 534-586 (791)
110 KOG4301 Beta-dystrobrevin [Cyt 96.2 0.0011 2.3E-08 64.5 -0.5 50 322-379 241-290 (434)
111 KOG1039 Predicted E3 ubiquitin 96.2 0.0033 7.1E-08 62.8 2.8 51 17-67 159-222 (344)
112 KOG4172 Predicted E3 ubiquitin 96.2 0.001 2.2E-08 47.1 -0.6 45 209-253 8-54 (62)
113 KOG4265 Predicted E3 ubiquitin 96.1 0.0034 7.4E-08 61.9 2.2 49 18-68 289-338 (349)
114 KOG0804 Cytoplasmic Zn-finger 96.0 0.0024 5.2E-08 64.5 0.9 49 14-66 170-222 (493)
115 KOG4367 Predicted Zn-finger pr 95.9 0.0055 1.2E-07 61.4 3.1 37 16-52 1-37 (699)
116 KOG4265 Predicted E3 ubiquitin 95.9 0.0042 9E-08 61.3 1.9 48 206-253 288-336 (349)
117 PF11793 FANCL_C: FANCL C-term 95.9 0.0019 4.1E-08 49.5 -0.4 48 19-66 2-66 (70)
118 PF14447 Prok-RING_4: Prokaryo 95.8 0.0051 1.1E-07 44.1 1.7 47 207-255 6-52 (55)
119 KOG0457 Histone acetyltransfer 95.8 0.0061 1.3E-07 61.5 2.9 53 322-382 15-67 (438)
120 cd02336 ZZ_RSC8 Zinc finger, Z 95.8 0.011 2.4E-07 40.9 3.3 40 323-371 2-41 (45)
121 KOG1645 RING-finger-containing 95.8 0.012 2.7E-07 58.8 4.8 47 19-65 4-55 (463)
122 KOG1814 Predicted E3 ubiquitin 95.6 0.02 4.4E-07 57.4 5.5 46 205-250 181-237 (445)
123 PF11793 FANCL_C: FANCL C-term 95.5 0.0021 4.6E-08 49.2 -1.3 46 208-253 2-66 (70)
124 COG5219 Uncharacterized conser 95.5 0.0072 1.6E-07 66.0 2.2 53 14-66 1464-1523(1525)
125 KOG1002 Nucleotide excision re 95.5 0.0055 1.2E-07 62.9 1.2 48 206-253 534-586 (791)
126 KOG1734 Predicted RING-contain 95.4 0.0042 9.1E-08 58.7 -0.0 47 207-253 223-281 (328)
127 KOG1785 Tyrosine kinase negati 95.3 0.0086 1.9E-07 59.5 2.0 52 19-70 369-420 (563)
128 KOG1645 RING-finger-containing 95.3 0.013 2.8E-07 58.6 3.2 52 208-259 4-62 (463)
129 KOG1785 Tyrosine kinase negati 95.3 0.0086 1.9E-07 59.5 1.8 47 209-255 370-418 (563)
130 KOG1039 Predicted E3 ubiquitin 95.2 0.01 2.2E-07 59.3 2.1 49 206-254 159-222 (344)
131 KOG0828 Predicted E3 ubiquitin 95.1 0.01 2.2E-07 60.6 1.7 48 207-254 570-635 (636)
132 KOG1734 Predicted RING-contain 95.1 0.0074 1.6E-07 57.0 0.7 49 18-66 223-281 (328)
133 PF14447 Prok-RING_4: Prokaryo 95.0 0.0091 2E-07 42.8 0.8 47 16-66 4-50 (55)
134 smart00744 RINGv The RING-vari 94.8 0.027 5.8E-07 39.9 2.7 40 210-249 1-49 (49)
135 COG5194 APC11 Component of SCF 94.8 0.027 5.9E-07 43.3 2.8 44 210-253 33-81 (88)
136 KOG1493 Anaphase-promoting com 94.8 0.0096 2.1E-07 45.3 0.4 33 221-253 45-81 (84)
137 KOG3800 Predicted E3 ubiquitin 94.8 0.021 4.6E-07 54.8 2.8 50 210-259 2-57 (300)
138 COG5114 Histone acetyltransfer 94.7 0.014 3.1E-07 56.3 1.6 56 322-385 6-61 (432)
139 PF14570 zf-RING_4: RING/Ubox 94.7 0.026 5.7E-07 39.5 2.4 43 22-65 1-47 (48)
140 KOG1940 Zn-finger protein [Gen 94.7 0.021 4.5E-07 55.2 2.6 42 209-250 159-204 (276)
141 KOG4739 Uncharacterized protei 94.7 0.023 5E-07 53.4 2.8 44 209-254 4-49 (233)
142 KOG0828 Predicted E3 ubiquitin 94.4 0.026 5.7E-07 57.7 2.7 49 17-66 569-634 (636)
143 KOG1941 Acetylcholine receptor 94.4 0.018 4E-07 57.1 1.5 46 18-63 364-413 (518)
144 KOG1493 Anaphase-promoting com 94.3 0.015 3.3E-07 44.3 0.6 46 21-66 22-81 (84)
145 PF04641 Rtf2: Rtf2 RING-finge 94.3 0.041 8.9E-07 53.4 3.7 51 205-256 110-164 (260)
146 KOG4692 Predicted E3 ubiquitin 94.3 0.022 4.8E-07 55.8 1.7 49 205-253 419-467 (489)
147 KOG1814 Predicted E3 ubiquitin 94.0 0.14 3.1E-06 51.5 6.8 49 16-64 181-238 (445)
148 COG5194 APC11 Component of SCF 94.0 0.065 1.4E-06 41.3 3.3 33 32-66 48-81 (88)
149 KOG0827 Predicted E3 ubiquitin 93.9 0.048 1E-06 54.3 3.3 46 209-254 197-246 (465)
150 KOG1001 Helicase-like transcri 93.9 0.025 5.4E-07 61.9 1.4 46 20-66 455-500 (674)
151 KOG4275 Predicted E3 ubiquitin 93.8 0.012 2.7E-07 56.2 -1.0 41 19-65 300-341 (350)
152 KOG4185 Predicted E3 ubiquitin 93.8 0.046 9.9E-07 54.1 3.0 44 209-252 4-54 (296)
153 KOG4739 Uncharacterized protei 93.7 0.043 9.3E-07 51.6 2.4 43 20-66 4-48 (233)
154 KOG0827 Predicted E3 ubiquitin 93.4 0.046 9.9E-07 54.4 2.2 44 210-253 6-56 (465)
155 KOG3002 Zn finger protein [Gen 93.4 0.061 1.3E-06 53.0 3.0 49 15-68 44-93 (299)
156 PF07800 DUF1644: Protein of u 93.2 0.06 1.3E-06 47.3 2.4 49 207-255 1-93 (162)
157 KOG4275 Predicted E3 ubiquitin 93.2 0.017 3.7E-07 55.3 -1.1 41 208-252 300-341 (350)
158 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.082 1.8E-06 37.6 2.5 46 19-64 2-50 (50)
159 KOG1812 Predicted E3 ubiquitin 92.9 0.32 6.8E-06 49.9 7.5 42 207-248 305-351 (384)
160 KOG0826 Predicted E3 ubiquitin 92.8 0.083 1.8E-06 51.6 2.9 46 18-65 299-345 (357)
161 KOG3039 Uncharacterized conser 92.7 0.074 1.6E-06 49.8 2.4 49 18-68 220-272 (303)
162 KOG4692 Predicted E3 ubiquitin 92.6 0.071 1.5E-06 52.4 2.2 47 17-65 420-466 (489)
163 PF14570 zf-RING_4: RING/Ubox 92.6 0.071 1.5E-06 37.4 1.5 42 211-252 1-47 (48)
164 KOG1571 Predicted E3 ubiquitin 92.5 0.051 1.1E-06 53.8 1.1 48 14-66 300-347 (355)
165 KOG3002 Zn finger protein [Gen 92.5 0.12 2.7E-06 50.9 3.8 60 205-270 45-105 (299)
166 KOG2930 SCF ubiquitin ligase, 92.5 0.11 2.3E-06 42.1 2.6 28 36-65 80-107 (114)
167 COG5175 MOT2 Transcriptional r 92.2 0.13 2.8E-06 50.3 3.4 48 19-67 14-65 (480)
168 PF04641 Rtf2: Rtf2 RING-finge 91.7 0.2 4.4E-06 48.6 4.2 50 16-68 110-163 (260)
169 PF08746 zf-RING-like: RING-li 91.0 0.2 4.4E-06 34.3 2.4 40 22-61 1-43 (43)
170 KOG2930 SCF ubiquitin ligase, 90.7 0.13 2.9E-06 41.6 1.5 28 225-252 80-107 (114)
171 KOG2114 Vacuolar assembly/sort 90.6 0.17 3.6E-06 55.4 2.5 40 209-251 841-881 (933)
172 COG5219 Uncharacterized conser 90.6 0.077 1.7E-06 58.3 0.0 46 208-253 1469-1523(1525)
173 KOG2817 Predicted E3 ubiquitin 90.1 0.22 4.8E-06 50.0 2.8 50 15-65 330-384 (394)
174 KOG1941 Acetylcholine receptor 90.1 0.11 2.3E-06 51.9 0.5 45 206-250 363-413 (518)
175 COG5236 Uncharacterized conser 89.8 0.19 4.2E-06 49.3 2.0 48 205-252 58-107 (493)
176 KOG3161 Predicted E3 ubiquitin 89.7 0.11 2.5E-06 54.8 0.4 41 15-59 7-51 (861)
177 KOG0826 Predicted E3 ubiquitin 89.7 0.17 3.8E-06 49.4 1.6 48 205-252 297-345 (357)
178 KOG1001 Helicase-like transcri 89.7 0.2 4.3E-06 54.9 2.3 44 209-253 455-500 (674)
179 PF07800 DUF1644: Protein of u 89.7 0.49 1.1E-05 41.7 4.3 20 18-37 1-20 (162)
180 KOG2817 Predicted E3 ubiquitin 89.5 0.18 4E-06 50.6 1.7 45 207-251 333-383 (394)
181 KOG1571 Predicted E3 ubiquitin 89.0 0.12 2.7E-06 51.2 0.1 43 208-253 305-347 (355)
182 PF05290 Baculo_IE-1: Baculovi 88.9 0.31 6.6E-06 41.6 2.4 48 207-254 79-133 (140)
183 KOG2114 Vacuolar assembly/sort 88.9 0.26 5.6E-06 54.0 2.4 41 19-64 840-881 (933)
184 KOG3970 Predicted E3 ubiquitin 88.9 0.53 1.2E-05 43.6 4.1 45 210-254 52-106 (299)
185 PF06524 NOA36: NOA36 protein; 88.8 1 2.2E-05 42.8 5.9 25 230-254 127-154 (314)
186 PF10367 Vps39_2: Vacuolar sor 88.8 0.19 4.2E-06 41.3 1.1 30 207-236 77-108 (109)
187 KOG4362 Transcriptional regula 88.8 0.2 4.3E-06 54.1 1.4 49 206-254 19-70 (684)
188 PF10367 Vps39_2: Vacuolar sor 88.5 0.14 3E-06 42.3 0.0 32 16-47 75-108 (109)
189 COG5236 Uncharacterized conser 88.5 0.38 8.3E-06 47.3 3.0 50 16-65 58-107 (493)
190 KOG3800 Predicted E3 ubiquitin 88.4 0.82 1.8E-05 44.2 5.1 45 21-66 2-51 (300)
191 KOG4445 Uncharacterized conser 88.0 0.26 5.7E-06 47.6 1.5 50 17-66 113-186 (368)
192 KOG4185 Predicted E3 ubiquitin 87.9 0.6 1.3E-05 46.1 4.2 46 19-65 3-54 (296)
193 KOG4362 Transcriptional regula 87.8 0.15 3.3E-06 55.0 -0.2 54 13-66 15-69 (684)
194 COG5220 TFB3 Cdk activating ki 87.0 0.23 4.9E-06 46.4 0.5 46 207-252 9-63 (314)
195 KOG3161 Predicted E3 ubiquitin 87.0 0.18 3.9E-06 53.4 -0.1 40 205-246 8-51 (861)
196 PF03854 zf-P11: P-11 zinc fin 86.3 0.31 6.8E-06 33.7 0.8 45 209-255 3-48 (50)
197 PF02891 zf-MIZ: MIZ/SP-RING z 86.0 0.24 5.2E-06 35.1 0.1 41 209-250 3-49 (50)
198 KOG1940 Zn-finger protein [Gen 85.7 0.54 1.2E-05 45.6 2.4 43 19-63 158-204 (276)
199 KOG1812 Predicted E3 ubiquitin 85.7 0.96 2.1E-05 46.4 4.3 40 208-247 146-195 (384)
200 PF08746 zf-RING-like: RING-li 85.4 0.72 1.6E-05 31.6 2.2 38 211-248 1-43 (43)
201 PF05290 Baculo_IE-1: Baculovi 85.4 0.93 2E-05 38.7 3.3 50 18-67 79-133 (140)
202 KOG3970 Predicted E3 ubiquitin 85.1 1.9 4.1E-05 40.1 5.4 48 19-66 50-105 (299)
203 COG5175 MOT2 Transcriptional r 84.8 0.78 1.7E-05 45.1 3.0 49 206-255 13-66 (480)
204 PF00643 zf-B_box: B-box zinc 83.4 1 2.2E-05 30.3 2.4 30 322-358 4-33 (42)
205 PHA02862 5L protein; Provision 83.1 1.2 2.6E-05 38.6 3.1 46 20-66 3-53 (156)
206 PHA02825 LAP/PHD finger-like p 81.9 1.6 3.4E-05 38.6 3.4 49 17-66 6-59 (162)
207 KOG2932 E3 ubiquitin ligase in 80.3 0.84 1.8E-05 44.4 1.3 43 208-252 90-133 (389)
208 PHA03096 p28-like protein; Pro 80.3 1.2 2.7E-05 43.6 2.5 45 20-64 179-232 (284)
209 COG5109 Uncharacterized conser 79.8 1 2.2E-05 43.9 1.7 55 11-65 328-386 (396)
210 KOG3113 Uncharacterized conser 78.8 4.1 8.8E-05 38.7 5.2 50 205-256 108-161 (293)
211 PF07649 C1_3: C1-like domain; 78.4 1.4 3.1E-05 27.5 1.5 28 323-355 2-30 (30)
212 PF05883 Baculo_RING: Baculovi 78.1 1.3 2.8E-05 38.1 1.7 33 19-51 26-67 (134)
213 KOG3579 Predicted E3 ubiquitin 77.0 1 2.2E-05 43.3 0.8 37 18-54 267-307 (352)
214 PF12906 RINGv: RING-variant d 76.9 1.1 2.4E-05 31.3 0.7 40 22-61 1-47 (47)
215 KOG1952 Transcription factor N 76.5 1.1 2.5E-05 49.1 1.1 55 197-251 180-245 (950)
216 KOG4445 Uncharacterized conser 76.1 0.72 1.6E-05 44.6 -0.5 47 207-253 114-186 (368)
217 KOG1428 Inhibitor of type V ad 75.6 3.4 7.3E-05 48.2 4.4 51 17-67 3484-3545(3738)
218 KOG2932 E3 ubiquitin ligase in 74.7 1.6 3.6E-05 42.4 1.5 42 21-66 92-134 (389)
219 COG5109 Uncharacterized conser 74.6 1.3 2.9E-05 43.1 0.9 44 207-250 335-384 (396)
220 KOG0298 DEAD box-containing he 74.3 1.3 2.9E-05 50.8 1.0 51 12-64 1146-1197(1394)
221 KOG2034 Vacuolar sorting prote 72.0 1.6 3.5E-05 48.3 0.9 35 205-239 814-850 (911)
222 KOG0298 DEAD box-containing he 68.9 1.4 3.1E-05 50.7 -0.4 46 207-252 1152-1198(1394)
223 KOG1952 Transcription factor N 68.8 4.3 9.3E-05 44.9 3.2 50 17-66 189-247 (950)
224 PF14569 zf-UDP: Zinc-binding 68.7 5.6 0.00012 30.7 2.9 47 19-66 9-62 (80)
225 PF05605 zf-Di19: Drought indu 67.4 3.8 8.3E-05 29.3 1.8 40 18-64 1-40 (54)
226 PF04931 DNA_pol_phi: DNA poly 65.4 5.8 0.00013 44.8 3.6 8 384-391 626-633 (784)
227 PHA02825 LAP/PHD finger-like p 65.1 5.4 0.00012 35.3 2.5 46 206-252 6-58 (162)
228 PHA03096 p28-like protein; Pro 64.6 3.2 7E-05 40.7 1.2 42 209-250 179-231 (284)
229 KOG3113 Uncharacterized conser 63.1 13 0.00029 35.3 4.9 49 17-69 109-161 (293)
230 KOG1100 Predicted E3 ubiquitin 63.1 2.7 5.8E-05 39.3 0.3 48 13-66 152-200 (207)
231 PF12253 CAF1A: Chromatin asse 62.9 7.3 0.00016 30.3 2.6 12 446-457 66-77 (77)
232 KOG1100 Predicted E3 ubiquitin 61.8 3.9 8.4E-05 38.2 1.1 39 211-253 161-200 (207)
233 KOG2979 Protein involved in DN 61.2 8.8 0.00019 36.7 3.4 49 16-64 173-222 (262)
234 KOG2113 Predicted RNA binding 61.0 8.7 0.00019 37.7 3.3 227 17-252 134-386 (394)
235 KOG3268 Predicted E3 ubiquitin 60.9 4.5 9.6E-05 36.3 1.3 47 208-254 165-229 (234)
236 PF10571 UPF0547: Uncharacteri 60.9 3.8 8.1E-05 24.8 0.6 9 211-219 3-11 (26)
237 KOG1428 Inhibitor of type V ad 60.7 5.8 0.00013 46.4 2.4 48 206-253 3484-3544(3738)
238 PRK14891 50S ribosomal protein 57.8 7.7 0.00017 33.0 2.1 34 322-358 5-41 (131)
239 PF07191 zinc-ribbons_6: zinc- 57.4 1.2 2.6E-05 33.8 -2.4 41 208-253 1-41 (70)
240 KOG3899 Uncharacterized conser 57.0 8 0.00017 37.5 2.3 30 37-66 325-365 (381)
241 KOG3268 Predicted E3 ubiquitin 56.4 9.9 0.00021 34.2 2.7 47 20-66 166-228 (234)
242 KOG0943 Predicted ubiquitin-pr 55.8 9 0.00019 44.1 2.8 11 41-51 1271-1281(3015)
243 KOG1815 Predicted E3 ubiquitin 55.6 7.8 0.00017 40.7 2.3 36 17-52 68-104 (444)
244 KOG1815 Predicted E3 ubiquitin 53.3 8.4 0.00018 40.4 2.1 34 207-240 69-103 (444)
245 PF03854 zf-P11: P-11 zinc fin 52.7 3.8 8.3E-05 28.5 -0.4 41 22-66 5-46 (50)
246 PF10272 Tmpp129: Putative tra 52.7 11 0.00024 38.1 2.7 30 37-66 311-351 (358)
247 PF07975 C1_4: TFIIH C1-like d 51.9 17 0.00036 25.9 2.7 25 225-249 26-50 (51)
248 PF05883 Baculo_RING: Baculovi 50.8 20 0.00043 31.0 3.5 40 207-246 25-73 (134)
249 PF14446 Prok-RING_1: Prokaryo 50.2 13 0.00029 26.7 2.0 30 19-48 5-38 (54)
250 PF06906 DUF1272: Protein of u 50.2 14 0.00031 26.7 2.1 45 21-69 7-55 (57)
251 PF10272 Tmpp129: Putative tra 49.9 10 0.00022 38.4 2.0 27 228-254 313-352 (358)
252 KOG2034 Vacuolar sorting prote 49.1 11 0.00023 42.2 2.1 37 15-51 813-851 (911)
253 KOG2169 Zn-finger transcriptio 49.0 12 0.00026 41.2 2.5 67 204-270 302-373 (636)
254 cd00021 BBOX B-Box-type zinc f 48.6 17 0.00038 23.4 2.4 20 335-358 11-30 (39)
255 PLN02189 cellulose synthase 46.4 13 0.00028 42.6 2.3 45 21-66 36-87 (1040)
256 PF02207 zf-UBR: Putative zinc 45.7 13 0.00028 28.3 1.5 36 335-380 12-47 (71)
257 KOG4317 Predicted Zn-finger pr 44.7 7.5 0.00016 38.1 0.1 30 322-358 8-38 (383)
258 PLN02638 cellulose synthase A 44.4 15 0.00032 42.3 2.3 45 21-66 19-70 (1079)
259 PF14446 Prok-RING_1: Prokaryo 44.3 17 0.00038 26.1 1.9 31 208-238 5-39 (54)
260 PLN02436 cellulose synthase A 43.9 15 0.00033 42.2 2.3 45 21-66 38-89 (1094)
261 PHA02862 5L protein; Provision 43.7 17 0.00037 31.7 2.1 43 210-253 4-53 (156)
262 smart00336 BBOX B-Box-type zin 43.3 25 0.00054 23.1 2.5 29 322-357 4-32 (42)
263 PF10235 Cript: Microtubule-as 43.2 14 0.0003 29.6 1.4 37 208-253 44-80 (90)
264 PF03107 C1_2: C1 domain; Int 43.2 22 0.00048 22.1 2.0 27 323-354 2-29 (30)
265 KOG3899 Uncharacterized conser 42.1 13 0.00029 36.0 1.3 29 226-254 325-366 (381)
266 PF14569 zf-UDP: Zinc-binding 41.9 14 0.0003 28.6 1.2 46 208-253 9-62 (80)
267 COG5220 TFB3 Cdk activating ki 41.6 11 0.00024 35.5 0.7 45 19-64 10-62 (314)
268 PLN02195 cellulose synthase A 41.2 20 0.00043 40.9 2.7 46 20-66 7-59 (977)
269 COG5151 SSL1 RNA polymerase II 41.2 35 0.00076 33.5 4.0 24 228-252 295-318 (421)
270 PF06844 DUF1244: Protein of u 40.8 16 0.00036 27.3 1.3 13 40-52 11-23 (68)
271 COG3813 Uncharacterized protei 40.8 21 0.00046 27.1 1.9 27 38-68 28-54 (84)
272 KOG4718 Non-SMC (structural ma 40.3 15 0.00033 34.0 1.4 47 208-254 181-228 (235)
273 PF14353 CpXC: CpXC protein 39.4 16 0.00035 31.1 1.3 47 208-254 1-50 (128)
274 PF13240 zinc_ribbon_2: zinc-r 38.7 11 0.00024 22.1 0.1 10 241-250 12-21 (23)
275 PF06524 NOA36: NOA36 protein; 37.7 31 0.00067 33.1 3.0 22 210-231 53-74 (314)
276 PLN02400 cellulose synthase 37.6 20 0.00043 41.3 2.0 45 21-66 38-89 (1085)
277 KOG3579 Predicted E3 ubiquitin 37.4 13 0.00028 36.0 0.4 35 206-240 266-304 (352)
278 COG3813 Uncharacterized protei 36.7 34 0.00074 26.0 2.5 32 226-259 27-58 (84)
279 PF04216 FdhE: Protein involve 36.1 11 0.00023 37.2 -0.4 45 208-252 172-221 (290)
280 COG5183 SSM4 Protein involved 35.4 29 0.00064 38.4 2.7 49 18-66 11-66 (1175)
281 COG5406 Nucleosome binding fac 34.6 35 0.00075 36.9 3.1 13 225-237 697-709 (1001)
282 cd00350 rubredoxin_like Rubred 34.4 29 0.00063 22.1 1.6 10 241-250 16-25 (33)
283 PLN02915 cellulose synthase A 34.0 26 0.00057 40.2 2.2 47 19-66 15-68 (1044)
284 KOG2462 C2H2-type Zn-finger pr 32.9 30 0.00064 33.5 2.1 58 17-74 159-234 (279)
285 KOG2462 C2H2-type Zn-finger pr 32.9 15 0.00033 35.4 0.2 50 206-255 159-228 (279)
286 PF06869 DUF1258: Protein of u 32.6 46 0.001 32.0 3.3 57 227-284 17-75 (258)
287 TIGR01562 FdhE formate dehydro 32.2 18 0.00038 36.0 0.5 45 207-251 183-233 (305)
288 cd00065 FYVE FYVE domain; Zinc 31.5 23 0.00049 25.2 0.8 29 210-238 4-36 (57)
289 PRK04023 DNA polymerase II lar 31.5 41 0.00088 38.5 3.1 49 204-254 622-675 (1121)
290 KOG2068 MOT2 transcription fac 31.3 41 0.00088 33.5 2.8 46 209-254 250-299 (327)
291 KOG0006 E3 ubiquitin-protein l 30.8 1.4E+02 0.0031 29.5 6.3 31 206-236 219-251 (446)
292 smart00064 FYVE Protein presen 30.8 28 0.00061 25.8 1.3 32 208-239 10-45 (68)
293 PRK04023 DNA polymerase II lar 30.1 39 0.00084 38.7 2.7 46 18-67 625-675 (1121)
294 KOG1832 HIV-1 Vpr-binding prot 30.1 67 0.0015 36.4 4.4 19 27-45 794-815 (1516)
295 PF00628 PHD: PHD-finger; Int 29.8 11 0.00024 26.3 -1.1 40 210-249 1-49 (51)
296 PF15616 TerY-C: TerY-C metal 29.4 27 0.00058 30.1 1.0 46 13-66 71-116 (131)
297 smart00249 PHD PHD zinc finger 29.4 43 0.00093 22.0 2.0 28 210-237 1-31 (47)
298 PF09538 FYDLN_acid: Protein o 28.1 33 0.00072 28.5 1.4 13 54-66 25-37 (108)
299 COG4647 AcxC Acetone carboxyla 28.0 25 0.00055 29.9 0.6 21 24-44 62-82 (165)
300 KOG0772 Uncharacterized conser 27.7 43 0.00093 35.3 2.3 10 399-408 102-111 (641)
301 smart00154 ZnF_AN1 AN1-like Zi 27.6 33 0.00072 22.8 1.0 23 22-44 1-25 (39)
302 KOG4718 Non-SMC (structural ma 27.6 43 0.00094 31.1 2.1 46 19-66 181-227 (235)
303 KOG2979 Protein involved in DN 26.9 27 0.00058 33.5 0.7 44 208-251 176-222 (262)
304 COG5627 MMS21 DNA repair prote 26.4 83 0.0018 29.8 3.7 43 18-60 188-231 (275)
305 KOG2169 Zn-finger transcriptio 26.4 57 0.0012 36.0 3.2 52 15-66 302-356 (636)
306 KOG1189 Global transcriptional 26.3 56 0.0012 36.1 3.0 10 226-235 650-659 (960)
307 COG4530 Uncharacterized protei 24.6 61 0.0013 26.8 2.2 21 419-439 86-107 (129)
308 smart00396 ZnF_UBR1 Putative z 24.0 69 0.0015 24.4 2.4 34 336-379 13-46 (71)
309 KOG2231 Predicted E3 ubiquitin 23.6 50 0.0011 36.2 2.1 46 21-66 2-52 (669)
310 KOG0309 Conserved WD40 repeat- 23.5 33 0.00072 37.7 0.7 40 208-247 1028-1069(1081)
311 PRK03564 formate dehydrogenase 23.4 38 0.00082 33.7 1.0 44 207-250 186-234 (309)
312 KOG4364 Chromatin assembly fac 23.2 59 0.0013 35.4 2.4 7 451-457 552-558 (811)
313 KOG3799 Rab3 effector RIM1 and 23.2 32 0.0007 29.5 0.4 38 206-253 63-100 (169)
314 PF10497 zf-4CXXC_R1: Zinc-fin 22.8 67 0.0015 26.5 2.2 26 227-252 37-71 (105)
315 PF04710 Pellino: Pellino; In 22.7 28 0.00061 35.5 -0.0 55 199-253 268-339 (416)
316 KOG2038 CAATT-binding transcri 22.7 88 0.0019 34.8 3.6 11 260-270 742-752 (988)
317 KOG2038 CAATT-binding transcri 22.0 94 0.002 34.6 3.7 9 383-391 836-844 (988)
318 PRK11088 rrmA 23S rRNA methylt 21.7 46 0.00099 32.2 1.2 24 19-42 2-28 (272)
319 COG0068 HypF Hydrogenase matur 21.5 45 0.00097 36.7 1.2 48 205-252 98-183 (750)
320 KOG1829 Uncharacterized conser 20.9 46 0.001 35.9 1.1 22 35-61 535-556 (580)
321 KOG3053 Uncharacterized conser 20.7 93 0.002 29.9 3.0 70 13-82 14-98 (293)
322 KOG3476 Microtubule-associated 20.7 24 0.00051 27.8 -0.8 39 19-68 54-92 (100)
No 1
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=5.2e-12 Score=115.67 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=71.7
Q ss_pred CcccccccccccCCCchhhhhhhhccccccccccchhhhcCCCCCchhhhh-hccCCCCCcccccccccCCCce---Ec-
Q 043080 150 SSPCMKSLEMTAESGDDAMLKLVTSSECSEATANSTAQECGLVGNDLEHKA-ENWVSVDDLSCAACKKMLFKPV---VL- 224 (458)
Q Consensus 150 ~~~~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~C~iC~~~~~~pv---~l- 224 (458)
++|+....|.+.....++|..-+..+.++.....+.+..+.|+..+-.... ........+.||||...|.+.+ +|
T Consensus 162 sFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr 241 (303)
T KOG3039|consen 162 SFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLR 241 (303)
T ss_pred ceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEec
Confidence 366655566554444444444444444443334556777777665532222 1122337899999999999753 23
Q ss_pred ccCchhhHhhhhhccCCCCCCCCCccCCCCCCc
Q 043080 225 NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 225 ~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 257 (458)
+|||+||..|++.++...+.||+|..++..+.+
T Consensus 242 ~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 242 PSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 999999999999999999999999998876543
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.27 E-value=2.1e-12 Score=88.67 Aligned_cols=40 Identities=38% Similarity=0.861 Sum_probs=32.2
Q ss_pred cccccccccCcEEccCCChhhHHhHHHHHhcCCC--CCCCCC
Q 043080 22 CCVCLELLYKPVVLACGHISCFWCVYNAMNSWHE--SNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~--~~CP~C 61 (458)
|+||+++|.+||+++|||+||+.||.+++..... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986544 479987
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.14 E-value=1.6e-11 Score=84.34 Aligned_cols=38 Identities=42% Similarity=1.031 Sum_probs=30.3
Q ss_pred cccccccCCCceEcccCchhhHhhhhhccCC----CCCCCCC
Q 043080 211 CAACKKMLFKPVVLNCGHVFCELCLFVPEDG----NFKCPNC 248 (458)
Q Consensus 211 C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~----~~~CP~C 248 (458)
||||+++|++||+|+|||+||..||.++++. ...||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999872 2689987
No 4
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.11 E-value=6.6e-11 Score=81.59 Aligned_cols=45 Identities=44% Similarity=1.043 Sum_probs=41.1
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
|.||.|...||.|.||+|..|. +||||+.|+... .|...|.|..|
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~---dyDLC~~Cf~~~---------~H~~~H~F~ri 45 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCD---DFDFCENCFKTR---------KHNTRHTFGRI 45 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCC---CccchHHhhCCC---------CcCCCCceeeC
Confidence 5799999999999999999999 999999999985 58899988764
No 5
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=99.09 E-value=8.7e-11 Score=82.86 Aligned_cols=48 Identities=35% Similarity=0.855 Sum_probs=43.4
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceE
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEI 377 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~ 377 (458)
|.||.|...||.|.||+|+.|. +||||..|+..+ +..+.|..+|+|++
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~---d~DLC~~Cf~~g-----~~~~~H~~~Hp~~e 48 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCF---NYDLCQSCFFSG-----RTSKSHKNSHPMKE 48 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCC---CcCchHHHHhCC-----CcCCCCCCCCCeec
Confidence 5799999999999999999999 999999999986 45568999999976
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=1.1e-10 Score=105.34 Aligned_cols=66 Identities=30% Similarity=0.685 Sum_probs=51.8
Q ss_pred CCccchhcchhhhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcC--------------CCCCCCCCCCCCC
Q 043080 1 MEAEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW--------------HESNCPVCRNPYN 66 (458)
Q Consensus 1 ~e~~~~~~~~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~--------------~~~~CP~Cr~~~~ 66 (458)
|+.++.+++...+ .....+.|+||++.+.+||+++|||+||..||..|+... +...||+||..+.
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 1 MEIEKDEDDTTLV-DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCcccccccceec-cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 5566666554444 344579999999999999999999999999999997531 2457999999886
Q ss_pred C
Q 043080 67 H 67 (458)
Q Consensus 67 ~ 67 (458)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 3
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.07 E-value=9.9e-11 Score=88.06 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=55.3
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHH
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEE 269 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~ 269 (458)
++.||||++++.+||+++|||+||+.|+..|+.....||.|+..+....+..+..|++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 47899999999999999999999999999999888899999999977777778888777653
No 8
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.94 E-value=5.8e-10 Score=81.77 Aligned_cols=59 Identities=25% Similarity=0.580 Sum_probs=34.6
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHH
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFL 267 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~ 267 (458)
.-+.|++|..+|+.||.+ .|.|+||..|+...+. ..||+|+.+.....+++|..|++|+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhccC
Confidence 467899999999999976 9999999999988765 3599999999888899999999875
No 9
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=8.6e-10 Score=111.22 Aligned_cols=68 Identities=25% Similarity=0.512 Sum_probs=61.8
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFS 272 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~~ 272 (458)
++..+.|+||+++|..|++++|||+||..|+..++.....||+|+..+....+..|..|.+|++.|..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999998877789999999887778899999999998854
No 10
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=98.93 E-value=1e-09 Score=76.09 Aligned_cols=44 Identities=41% Similarity=0.941 Sum_probs=40.0
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceE
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEI 377 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~ 377 (458)
+.||.|+..+|.|.||+|..|. +||||+.|+... .|++.|+|..
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~---dyDLC~~C~~~~---------~H~~~H~f~r 44 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECP---NYDLCTTCYHGD---------KHDLEHRFYR 44 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCC---CccchHHHhCCC---------CCCCCCCEEe
Confidence 4699999999999999999999 999999999864 5899999876
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=3e-09 Score=107.37 Aligned_cols=62 Identities=19% Similarity=0.632 Sum_probs=53.1
Q ss_pred cchhcchhhhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 4 EEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+|..-....++.|+..+.|+||+++|..||+++|||+||..||..++.. ...||+|+..+..
T Consensus 11 Dw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 11 DWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred hhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 3444455667899999999999999999999999999999999999874 3479999998864
No 12
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.85 E-value=1.4e-09 Score=104.07 Aligned_cols=64 Identities=20% Similarity=0.608 Sum_probs=56.1
Q ss_pred CccchhcchhhhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 2 EAEEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 2 e~~~~~~~~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+.+|..-...++..|...++|-||.++|.-|+.++|||+||.-||..++. ....||.|+..++.
T Consensus 6 ~Sdw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 6 ESDWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTE 69 (442)
T ss_pred cccCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc--cCCCCCceecccch
Confidence 44566666778889999999999999999999999999999999999998 55689999998863
No 13
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.85 E-value=1.1e-09 Score=104.75 Aligned_cols=66 Identities=23% Similarity=0.436 Sum_probs=61.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
..-|+|.||.++|..|+.+||||+||.-||..++.....||.|+..+....++-|..|..|+..|-
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999888999999999999874
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.4e-09 Score=73.53 Aligned_cols=38 Identities=42% Similarity=1.024 Sum_probs=32.4
Q ss_pred cccccccccCc-EEccCCChhhHHhHHHHHhcCCCCCCCCC
Q 043080 22 CCVCLELLYKP-VVLACGHISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~~P-v~~~CgH~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
|+||++.+.+| +.++|||+||+.||.+++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 56999999999999999885 4689987
No 15
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.84 E-value=2e-09 Score=83.45 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
+.|.|||+++++.+||++++||+|++.+|..|+.. ...||.|+..+....+..|..|++.++.|.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHH
Confidence 57899999999999999999999999999999996 899999999998888999999999999985
No 16
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.84 E-value=3.4e-09 Score=74.41 Aligned_cols=47 Identities=38% Similarity=0.934 Sum_probs=41.4
Q ss_pred ccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 323 ~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
.||.|+..||.|.||+|++|.+ .+||||+.|+..+. .|...|+|..|
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~-~d~DlC~~C~~~~~--------~H~~~H~~~~i 48 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDD-GDFDLCQDCVVKGE--------SHQEDHWLVKI 48 (48)
T ss_pred CCCCCCCCccccceEECCCCCC-CCCccCHHHHhCcC--------CCCCCCceeeC
Confidence 6999999999999999999974 56999999999863 59999999864
No 17
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=98.84 E-value=2.9e-09 Score=75.58 Aligned_cols=48 Identities=38% Similarity=0.840 Sum_probs=42.4
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceE
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEI 377 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~ 377 (458)
|.||.|+..||.|.||+|+.|. +||||..|+..+. ..+.|.+.|+|..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~---d~dlC~~Cf~~~~-----~~~~H~~~H~~~~ 48 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICY---DYDLCADCYDSGV-----TTERHLFDHPMQC 48 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCC---CCccchhHHhCCC-----cCCCCCCCCCEEE
Confidence 5799999999999999999999 9999999999863 3458999999875
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=3.6e-09 Score=79.47 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=42.0
Q ss_pred CCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
++.||||++++.+||.++|||+||+.||..|+.. ...||+|+..+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 4789999999999999999999999999999985 457999999875
No 19
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=98.80 E-value=4.7e-09 Score=72.20 Aligned_cols=43 Identities=49% Similarity=1.013 Sum_probs=38.4
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
|.||.|+. +|.|.||+|+.|. +||||..|+... .| +.|+|..+
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~---d~dLC~~C~~~~---------~H-~~H~f~~~ 43 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCP---DYDLCESCEAKG---------VH-PEHAMLKI 43 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCC---CccchHHhhCcC---------CC-CCCCEEeC
Confidence 57999998 9999999999999 999999999986 47 99998753
No 20
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=98.80 E-value=2.7e-09 Score=71.70 Aligned_cols=34 Identities=44% Similarity=0.932 Sum_probs=32.1
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
+.||.|++.||+|.||+|..|. +||||+.|+...
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~---dyDLC~~C~~~~ 34 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKE---DYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCCcccccceEeCCCC---CCccHHHHhhhh
Confidence 5799999999999999999999 999999998875
No 21
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=98.79 E-value=4.6e-09 Score=74.48 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=42.8
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
+.|+.|...+|.|.||+|+.|. +||||..|+..+ +..+.|.+.|+|.++
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~---dydLC~~Cf~~~-----~~~~~H~~~H~~~~~ 49 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCR---DYSLCLGCYTKG-----RETKRHNSLHIMYEL 49 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCC---CcCchHHHHhCC-----CcCCCCCCCCCcccC
Confidence 3699999889999999999999 999999999975 444589999998763
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=3e-09 Score=72.74 Aligned_cols=40 Identities=38% Similarity=0.906 Sum_probs=36.9
Q ss_pred cccccccccCcE-EccCCChhhHHhHHHHHhcCCCCCCCCC
Q 043080 22 CCVCLELLYKPV-VLACGHISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~~Pv-~~~CgH~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
|+||++.+..|+ +++|||.||..||.+|+...+...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 7999999999999999997667789987
No 23
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=1.8e-09 Score=73.08 Aligned_cols=38 Identities=45% Similarity=0.950 Sum_probs=33.4
Q ss_pred cccccccCCCc-eEcccCchhhHhhhhhccCCCCCCCCC
Q 043080 211 CAACKKMLFKP-VVLNCGHVFCELCLFVPEDGNFKCPNC 248 (458)
Q Consensus 211 C~iC~~~~~~p-v~l~CgH~fC~~Cl~~~~~~~~~CP~C 248 (458)
|+||++.+.+| +.++|||+||..|+.++++....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 567999999999999998888899987
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.76 E-value=6.6e-09 Score=94.01 Aligned_cols=50 Identities=34% Similarity=0.650 Sum_probs=43.4
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC----------------CCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED----------------GNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~----------------~~~~CP~Cr~~~~~~ 255 (458)
.+.+.|+||++.+.+|++++|||+||..||..|+. ....||+||..+...
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 35789999999999999999999999999998853 246899999988654
No 25
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=98.74 E-value=2.2e-09 Score=75.24 Aligned_cols=38 Identities=53% Similarity=1.176 Sum_probs=31.5
Q ss_pred cccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 318 IHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 318 ~h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
+|.++.|+.|+..+|.|.||+|+.|. +||||..|+..+
T Consensus 1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~---d~dLC~~C~~~g 38 (46)
T PF00569_consen 1 IHHGYTCDGCGTDPIIGVRYHCLVCP---DYDLCEDCFSKG 38 (46)
T ss_dssp -CSSCE-SSS-SSSEESSEEEESSSS---S-EEEHHHHHH-
T ss_pred CCCCeECcCCCCCcCcCCeEECCCCC---CCchhhHHHhCc
Confidence 36789999999999999999999999 999999999986
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.9e-09 Score=95.49 Aligned_cols=52 Identities=35% Similarity=0.857 Sum_probs=45.3
Q ss_pred CCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCC-CCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHE-SNCPVCRNPYNHF 68 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~-~~CP~Cr~~~~~~ 68 (458)
-..|.|.||++...+||++.|||.||.-||.+|+..... ..||+|+..+...
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 457889999999999999999999999999999986544 4589999988754
No 27
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.71 E-value=1.4e-08 Score=97.95 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=70.1
Q ss_pred hhhcCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCc-----hhHHHHHHHHHHchH
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS-----ICHLLHFLLKKLYPL 85 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~-----~~~~l~~~l~~~~~~ 85 (458)
-+..+...++|.+|.+||+++.+ +.|.|+||++||..++.. ...||.|...+.+... ....++.++.+++|.
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPg 85 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPG 85 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHHcch
Confidence 35678899999999999999999 579999999999999985 5689999988865442 344589999999998
Q ss_pred HHHHHHHHHHHHHHHhC
Q 043080 86 TYEKRERQVAEEEKQLG 102 (458)
Q Consensus 86 ~~~~r~~~~~~e~~~~~ 102 (458)
.++...+......+..+
T Consensus 86 l~erE~k~~rdFy~~~~ 102 (331)
T KOG2660|consen 86 LQEREMKRRRDFYKSRP 102 (331)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 77655444444444443
No 28
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.70 E-value=7.8e-09 Score=73.97 Aligned_cols=46 Identities=33% Similarity=0.857 Sum_probs=40.1
Q ss_pred CCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+..|.||++...+++.++|||. ||..|+.+++. ....||+||+.+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 4679999999999999999999 99999999988 5668999999875
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.68 E-value=7.3e-09 Score=71.13 Aligned_cols=37 Identities=35% Similarity=0.856 Sum_probs=23.4
Q ss_pred cccccccccC----cEEccCCChhhHHhHHHHHhcC--CCCCCC
Q 043080 22 CCVCLELLYK----PVVLACGHISCFWCVYNAMNSW--HESNCP 59 (458)
Q Consensus 22 C~IC~~~l~~----Pv~~~CgH~FC~~Ci~~~~~~~--~~~~CP 59 (458)
||||.+ +.. |+.|+|||+||+.||.+++... +.++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 9999999999999999998854 456777
No 30
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.67 E-value=5.1e-09 Score=72.81 Aligned_cols=40 Identities=40% Similarity=0.890 Sum_probs=33.7
Q ss_pred cccccccccc---CcEEccCCChhhHHhHHHHHhcCCCCCCCCCC
Q 043080 21 KCCVCLELLY---KPVVLACGHISCFWCVYNAMNSWHESNCPVCR 62 (458)
Q Consensus 21 ~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr 62 (458)
.|+||++.+. .++.++|||.||..||.+|++. ..+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 5999999994 4566999999999999999986 35899996
No 31
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-08 Score=89.72 Aligned_cols=49 Identities=35% Similarity=0.956 Sum_probs=41.9
Q ss_pred CCCCccccccccccC--cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYK--PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~--Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+..+.||||++-+.+ ||.+.|||+||+.||...++ ....||+||+.++.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK--NTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHH--hCCCCCCcccccch
Confidence 456899999999874 67799999999999999988 55689999997764
No 32
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.1e-08 Score=90.05 Aligned_cols=56 Identities=27% Similarity=0.619 Sum_probs=46.4
Q ss_pred hhccCCCCCcccccccccCCC--ceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 200 AENWVSVDDLSCAACKKMLFK--PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 200 ~~~~~~~~~l~C~iC~~~~~~--pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
+.....+..+.||||+.-+.+ |+.+.|||+||+.||...++....||+|++.+..+
T Consensus 123 v~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 123 VDPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 333344566899999998875 66789999999999999999999999999977654
No 33
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.66 E-value=7.4e-09 Score=74.11 Aligned_cols=46 Identities=35% Similarity=0.662 Sum_probs=41.0
Q ss_pred CcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
+..|+||++...+++.++|||. ||..|+.+++.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999999999999999999 999999999989999999999764
No 34
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.62 E-value=3.5e-08 Score=68.72 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=39.6
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceE
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEI 377 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~ 377 (458)
|.||.|.. .+.|.||+|+.|. +||||..|+..+ +....|..+|+|.-
T Consensus 1 i~CdgC~~-~~~~~RykCl~C~---d~DlC~~Cf~~g-----~~~~~H~~~Hpm~~ 47 (48)
T cd02343 1 ISCDGCDE-IAPWHRYRCLQCT---DMDLCKTCFLGG-----VKPEGHEDDHEMVN 47 (48)
T ss_pred CCCCCCCC-cCCCceEECCCCC---CchhHHHHHhCC-----ccCCCCCCCCCccc
Confidence 46999986 4678999999999 999999999996 44458999998863
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.60 E-value=2.5e-08 Score=93.75 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=63.4
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhhhhHHHHHH
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFSDLYAERK 279 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~ 279 (458)
...+.|-||..+|..|+.++|||+||.-||..++.....||+||.......++-+..+..+++.|.......++
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~l~~ 96 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDLLRK 96 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHHHHH
Confidence 34678999999999999999999999999999999999999999988766677788888888887665555544
No 36
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.58 E-value=7.3e-08 Score=68.47 Aligned_cols=48 Identities=33% Similarity=0.850 Sum_probs=41.9
Q ss_pred ccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 323 ~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
.||.|...++.|.||+|..|. +||||..|+..+... +.|.+.|+|+.+
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~---d~dLC~~Cf~~g~~~-----~~H~~~H~~~~~ 49 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECP---DFDLCLECFSAGAEI-----GKHRNDHNYRVV 49 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCC---CcchhHHhhhCcCCC-----CCCCCCCCeEeC
Confidence 599999989988999999999 999999999986443 479999998764
No 37
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.1e-08 Score=93.02 Aligned_cols=54 Identities=30% Similarity=0.695 Sum_probs=46.0
Q ss_pred cCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCc
Q 043080 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS 70 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 70 (458)
..+....|.+|++-..+|..++|||.||.+||.+|.... ..||+||..++....
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek--~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK--AECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc--cCCCcccccCCCcce
Confidence 345678999999999999999999999999999999843 459999998875443
No 38
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.57 E-value=9.5e-09 Score=71.45 Aligned_cols=40 Identities=38% Similarity=0.726 Sum_probs=34.8
Q ss_pred ccccccccCC---CceEcccCchhhHhhhhhccCCCCCCCCCc
Q 043080 210 SCAACKKMLF---KPVVLNCGHVFCELCLFVPEDGNFKCPNCQ 249 (458)
Q Consensus 210 ~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr 249 (458)
.|+||++.+. ..+.++|||.||..|+..|++....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999884 567779999999999999999888999997
No 39
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=4.3e-08 Score=92.53 Aligned_cols=50 Identities=30% Similarity=0.840 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCc--------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKP--------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~P--------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
......|+||++.+.++ +.++|||.||..||..|+. ...+||+||..+..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~~ 228 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEeeE
Confidence 34578999999987653 5578999999999999987 45689999998753
No 40
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=2.8e-08 Score=67.90 Aligned_cols=38 Identities=45% Similarity=1.013 Sum_probs=35.4
Q ss_pred cccccccCCCce-EcccCchhhHhhhhhccC--CCCCCCCC
Q 043080 211 CAACKKMLFKPV-VLNCGHVFCELCLFVPED--GNFKCPNC 248 (458)
Q Consensus 211 C~iC~~~~~~pv-~l~CgH~fC~~Cl~~~~~--~~~~CP~C 248 (458)
|+||.+.+..|+ +++|||.||..|+..++. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999987 78889987
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.8e-08 Score=94.33 Aligned_cols=65 Identities=29% Similarity=0.714 Sum_probs=54.2
Q ss_pred CCCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 204 ~~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
...+.+.|+||+++|..|++++|||+||..|+..++.....||.||. ... .+..|..+.+++..+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERL 73 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHH
Confidence 35578999999999999988899999999999998877789999996 322 455677777777766
No 42
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.51 E-value=9e-08 Score=66.49 Aligned_cols=41 Identities=37% Similarity=0.925 Sum_probs=35.8
Q ss_pred ccccccccC---CCceEcccCchhhHhhhhhccCCCCCCCCCcc
Q 043080 210 SCAACKKML---FKPVVLNCGHVFCELCLFVPEDGNFKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~---~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~ 250 (458)
.|++|.+.+ ..|++++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999988 35788899999999999998877889999985
No 43
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.51 E-value=8.6e-08 Score=74.29 Aligned_cols=49 Identities=29% Similarity=0.471 Sum_probs=39.8
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+.|.|||+.+++.+||.+++||+|++.+|..|+.. +...||.++..+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 57899999999999999999999999999999986 46689999988864
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.50 E-value=8.7e-08 Score=90.22 Aligned_cols=61 Identities=21% Similarity=0.581 Sum_probs=53.0
Q ss_pred cchhcchhhhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 4 EEHEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+|..-+..++..|...+.|.||..+|.-|+.++|||+||.-||..++. ....||+||....
T Consensus 10 D~~~T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~ 70 (391)
T COG5432 10 DWNQTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPC 70 (391)
T ss_pred ccccccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhc--CCCCCccccccHH
Confidence 445556677888889999999999999999999999999999999998 4457999999875
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.50 E-value=2.4e-08 Score=68.54 Aligned_cols=35 Identities=51% Similarity=1.186 Sum_probs=22.2
Q ss_pred cccccccCCC----ceEcccCchhhHhhhhhccC----CCCCCC
Q 043080 211 CAACKKMLFK----PVVLNCGHVFCELCLFVPED----GNFKCP 246 (458)
Q Consensus 211 C~iC~~~~~~----pv~l~CgH~fC~~Cl~~~~~----~~~~CP 246 (458)
||||.+ +.. |++|+|||+||+.|+.++.. ..+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 99999999999999998876 356676
No 46
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.50 E-value=1.1e-07 Score=65.65 Aligned_cols=43 Identities=44% Similarity=1.070 Sum_probs=37.0
Q ss_pred ccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCC
Q 043080 21 KCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 21 ~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
.|+||++.+..++.+. |||.||..|+..|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4999999998888755 9999999999999885 46679999875
No 47
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=98.50 E-value=1.4e-07 Score=66.10 Aligned_cols=45 Identities=42% Similarity=0.979 Sum_probs=39.6
Q ss_pred ccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 323 ~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
.||.|+. +|.|.||+|.+|. +|+||..|+.... ..|...|.|+.+
T Consensus 2 ~C~~C~~-~i~g~r~~C~~C~---d~dLC~~Cf~~~~-------~~H~~~H~~~~~ 46 (46)
T cd02249 2 SCDGCLK-PIVGVRYHCLVCE---DFDLCSSCYAKGK-------KGHPPDHSFTEI 46 (46)
T ss_pred CCcCCCC-CCcCCEEECCCCC---CCcCHHHHHCcCc-------CCCCCCCCEeEC
Confidence 5999998 9999999999999 9999999999874 358889988763
No 48
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.48 E-value=1.3e-07 Score=65.70 Aligned_cols=41 Identities=34% Similarity=0.903 Sum_probs=34.6
Q ss_pred ccccccccc---cCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCC
Q 043080 21 KCCVCLELL---YKPVVLACGHISCFWCVYNAMNSWHESNCPVCRN 63 (458)
Q Consensus 21 ~C~IC~~~l---~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~ 63 (458)
.|+||.+.+ ..|++++|||+||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 389999999 367789999999999999877 35568999985
No 49
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-07 Score=90.26 Aligned_cols=56 Identities=21% Similarity=0.470 Sum_probs=49.5
Q ss_pred hccCCCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCC
Q 043080 201 ENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGL 256 (458)
Q Consensus 201 ~~~~~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 256 (458)
...+.+....|.+|++...+|-.+||||.||..||..|......||+||..++...
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34456677899999999999999999999999999999998888999999887643
No 50
>PHA02926 zinc finger-like protein; Provisional
Probab=98.44 E-value=1.6e-07 Score=85.93 Aligned_cols=55 Identities=31% Similarity=0.747 Sum_probs=43.1
Q ss_pred hhhcCCCCCccccccccccC---------cEEccCCChhhHHhHHHHHhcC----CCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYK---------PVVLACGHISCFWCVYNAMNSW----HESNCPVCRNPYN 66 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~---------Pv~~~CgH~FC~~Ci~~~~~~~----~~~~CP~Cr~~~~ 66 (458)
.+-....+..|+||++...+ ++..+|+|+||..||..|.... ....||+||..+.
T Consensus 163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34555678999999998753 3567999999999999998742 2356999999875
No 51
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.7e-08 Score=88.64 Aligned_cols=50 Identities=30% Similarity=0.665 Sum_probs=45.0
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC---CCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED---GNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~~ 255 (458)
...+.|.||++..++||++.|||.||..||.+|+. ....||+|+..+...
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 45789999999999999999999999999999987 577899999987654
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.42 E-value=4.7e-08 Score=71.82 Aligned_cols=49 Identities=35% Similarity=0.920 Sum_probs=28.1
Q ss_pred hcCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.++.-+.|++|.++|..||. ..|.|+||+.||...+. ..||+|+.+..
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw 51 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAW 51 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHH
Confidence 456677899999999999987 68999999999977543 35999998764
No 53
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.41 E-value=2.8e-07 Score=61.32 Aligned_cols=39 Identities=44% Similarity=1.020 Sum_probs=34.5
Q ss_pred cccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCC
Q 043080 22 CCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
|+||++....++.++|||.||..|+..|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 789999988999999999999999999987 345679987
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.40 E-value=1.5e-07 Score=88.92 Aligned_cols=47 Identities=30% Similarity=0.741 Sum_probs=40.5
Q ss_pred CCcccccccccCCCc--------eEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFKP--------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~p--------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.+..|+||++.+..+ ++++|||.||..|+.+|+.....||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 467899999987653 45589999999999999998899999999764
No 55
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1e-07 Score=92.48 Aligned_cols=73 Identities=33% Similarity=0.660 Sum_probs=58.0
Q ss_pred hhhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCch--hHHHHHHHHHHchH
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSI--CHLLHFLLKKLYPL 85 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~--~~~l~~~l~~~~~~ 85 (458)
.+..|..++.|+||++++...+++ .|+|.||+.||...++. +...||.||+.+...+.+ ...+..++.++++.
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 467788899999999999998885 59999999999998886 556899999998654443 23355667777765
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.36 E-value=2.2e-07 Score=64.10 Aligned_cols=42 Identities=38% Similarity=0.847 Sum_probs=36.9
Q ss_pred ccccccccCCCceEcc-cCchhhHhhhhhccCC-CCCCCCCccC
Q 043080 210 SCAACKKMLFKPVVLN-CGHVFCELCLFVPEDG-NFKCPNCQSL 251 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l~-CgH~fC~~Cl~~~~~~-~~~CP~Cr~~ 251 (458)
.|+||.+.+..++.++ |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 9999999999999875 7889999875
No 57
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=98.35 E-value=4.8e-07 Score=62.76 Aligned_cols=36 Identities=44% Similarity=1.145 Sum_probs=32.9
Q ss_pred ccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 319 HFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 319 h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
|.++.|+.|+. +|.|.||+|..|. +||||..|+..+
T Consensus 2 ~~~~~C~~C~~-~i~g~ry~C~~C~---d~dlC~~Cf~~~ 37 (44)
T smart00291 2 HHSYSCDTCGK-PIVGVRYHCLVCP---DYDLCQSCFAKG 37 (44)
T ss_pred CCCcCCCCCCC-CCcCCEEECCCCC---CccchHHHHhCc
Confidence 44589999998 9999999999999 999999999985
No 58
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.4e-08 Score=91.19 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=41.6
Q ss_pred CccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 20 ~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
-.|+||+....-||.+.|+|.||+-||+..... .+..|++||.++.+.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcc
Confidence 459999999999999999999999999876553 566799999999754
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.5e-07 Score=91.76 Aligned_cols=72 Identities=35% Similarity=0.830 Sum_probs=57.6
Q ss_pred cCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCchhHHH------HHHHHHHchHHHH
Q 043080 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLL------HFLLKKLYPLTYE 88 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l------~~~l~~~~~~~~~ 88 (458)
.+..+|.|.||..+|++||+++|||+||..||.+.+. ....||.||..+...+.....+ ..++.++++..+.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD--QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSS 157 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhc--cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4477999999999999999999999999999999877 5567999999997655544433 3566666666655
No 60
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=98.29 E-value=6.5e-07 Score=87.22 Aligned_cols=61 Identities=31% Similarity=0.690 Sum_probs=46.7
Q ss_pred CCCccccc-----cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC-CCCCCCCCC---CCCCCCcceE
Q 043080 314 NGPKIHFG-----VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP-AKVPGRFNQ---QHKPEHKFEI 377 (458)
Q Consensus 314 ~~~~~h~~-----v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~-~~~~gr~~~---~h~~~H~~~~ 377 (458)
....+|.+ +.||.|...+|+|.||+|..|. +||||+.|+..+ +...+++.+ .+++.|....
T Consensus 140 ~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~---dYDLCe~Ce~~~~~h~~H~~lR~~t~~t~~~~~~~ 209 (278)
T KOG4582|consen 140 VVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCP---DYDLCERCEAGNEHHAAHAMLRLHTNETPFSGYVM 209 (278)
T ss_pred CccccCCCcccccccCCCccCCccccceeeecCCC---ccchhHHhhcCCCCCcccceeecccccCCCCccee
Confidence 44567888 9999999999999999999999 999999999996 444445544 4444443333
No 61
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.28 E-value=5.4e-07 Score=59.91 Aligned_cols=38 Identities=47% Similarity=1.021 Sum_probs=34.6
Q ss_pred cccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCC
Q 043080 211 CAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNC 248 (458)
Q Consensus 211 C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~C 248 (458)
|+||++....++.++|||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999987 66779987
No 62
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.26 E-value=9.3e-07 Score=87.57 Aligned_cols=31 Identities=29% Similarity=0.895 Sum_probs=29.2
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhh
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLF 236 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~ 236 (458)
+++|.||||...|.+|+.|+|+|+.|+.|..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~ 32 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACAR 32 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHH
Confidence 5789999999999999999999999999974
No 63
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.4e-07 Score=89.37 Aligned_cols=50 Identities=38% Similarity=0.852 Sum_probs=44.8
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRN 63 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~ 63 (458)
....+.+.+.|+||+++|..|++++|||+||+.|+..++. ....||.||.
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 4567788999999999999998899999999999999887 5578999994
No 64
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.5e-07 Score=92.28 Aligned_cols=49 Identities=35% Similarity=0.743 Sum_probs=43.3
Q ss_pred CCccccccccccCcEEccCCChhhHHhHHHHHhcC---CCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW---HESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~---~~~~CP~Cr~~~~~ 67 (458)
...||||++...-|+.+.|||.||..||..+|... +...||+||..++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999999999854 33569999998864
No 65
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=98.23 E-value=4.9e-07 Score=87.40 Aligned_cols=60 Identities=35% Similarity=0.707 Sum_probs=53.5
Q ss_pred cccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCCCChhh
Q 043080 318 IHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQPTSLSD 385 (458)
Q Consensus 318 ~h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~~~~~~ 385 (458)
-|.||.||.|+.....+.||+|+.|. +||||.+||..+-.+. .|..+|+|+.+..+.-.+
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~---DyDlC~sCyen~~tt~-----~H~~dHPmqcil~~~dfe 64 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCS---DYDLCFSCYENGATTP-----IHDEDHPMQCILSRVDFE 64 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeec---chhHHHHHhhcCCCCc-----ccCCCCceeEEeecccee
Confidence 48899999999999999999999999 9999999999975554 799999999988766655
No 66
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.3e-07 Score=83.60 Aligned_cols=51 Identities=29% Similarity=0.684 Sum_probs=43.0
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.++.|.||++....|..++|||+||..||...|.....-.||+||+.....
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 477799999999999999999999999999965544545699999877543
No 67
>PHA02926 zinc finger-like protein; Provisional
Probab=98.11 E-value=1.4e-06 Score=79.85 Aligned_cols=49 Identities=20% Similarity=0.645 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCC---------ceEcccCchhhHhhhhhccCC------CCCCCCCccCCC
Q 043080 205 SVDDLSCAACKKMLFK---------PVVLNCGHVFCELCLFVPEDG------NFKCPNCQSLQP 253 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~---------pv~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~ 253 (458)
...+..|+||++.... +++.+|+|+||..|+..|... ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4467889999987643 355599999999999999863 356999999764
No 68
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2e-06 Score=87.61 Aligned_cols=51 Identities=33% Similarity=0.704 Sum_probs=44.9
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccC-----CCCCCCCCccCCCCCCch
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-----GNFKCPNCQSLQPYGLPS 258 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-----~~~~CP~Cr~~~~~~~~~ 258 (458)
...||||+....-|+.+.|||.||..||..+|. +...||+|+..+..+.+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 889999999999999999999999999999876 567899999988765443
No 69
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.04 E-value=3.1e-06 Score=65.48 Aligned_cols=40 Identities=40% Similarity=0.984 Sum_probs=31.6
Q ss_pred cccccccccc------------CcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCC
Q 043080 21 KCCVCLELLY------------KPVV-LACGHISCFWCVYNAMNSWHESNCPVCR 62 (458)
Q Consensus 21 ~C~IC~~~l~------------~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr 62 (458)
.|+||++.|. -++. ..|||.|+..||.+|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 4999999993 2333 579999999999999984 44899997
No 70
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=4.2e-06 Score=81.46 Aligned_cols=49 Identities=31% Similarity=0.692 Sum_probs=37.7
Q ss_pred Cccccccccc-CCCce---Ec-ccCchhhHhhhhhccC-CCCCCCCCccCCCCCC
Q 043080 208 DLSCAACKKM-LFKPV---VL-NCGHVFCELCLFVPED-GNFKCPNCQSLQPYGL 256 (458)
Q Consensus 208 ~l~C~iC~~~-~~~pv---~l-~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~ 256 (458)
+..||+|+.. +.+|- .+ +|||.||..|+..++. +...||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4689999983 44553 22 7999999999999765 6678999999886544
No 71
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.95 E-value=5.1e-06 Score=64.30 Aligned_cols=40 Identities=38% Similarity=0.792 Sum_probs=33.0
Q ss_pred ccccccccCCC------------ceE-cccCchhhHhhhhhccCCCCCCCCCc
Q 043080 210 SCAACKKMLFK------------PVV-LNCGHVFCELCLFVPEDGNFKCPNCQ 249 (458)
Q Consensus 210 ~C~iC~~~~~~------------pv~-l~CgH~fC~~Cl~~~~~~~~~CP~Cr 249 (458)
.|+||++.|.. ++. .+|||.|+..||.+|+.....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999999833 333 38999999999999999888999997
No 72
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.94 E-value=5.3e-06 Score=80.31 Aligned_cols=69 Identities=17% Similarity=0.406 Sum_probs=59.0
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCC----CCchhhHHHHHHHHHhhhhHH
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPY----GLPSVCLIIEHFLEERFSDLY 275 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~----~~~~~~~~l~~l~~~~~~~~~ 275 (458)
...+|.+|..+|.++.++ -|.|+||+.||..++.....||.|...+.. ..+..+..|+.|+-.++|.-+
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~ 87 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQ 87 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHH
Confidence 567899999999999887 899999999999999999999999986643 346667888888888887655
No 73
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.5e-06 Score=79.08 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=42.0
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhh-ccCCCC-CCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFV-PEDGNF-KCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~-~~~~~~-~CP~Cr~~~~~ 254 (458)
..++.|+||++....|..++|||.||..||.. |..... .||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 35788999999999999999999999999998 655444 49999997654
No 74
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2e-06 Score=83.64 Aligned_cols=69 Identities=20% Similarity=0.449 Sum_probs=54.5
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccC-CCCCCCCCccCC-CCCCchhhHHHHHHHHHhhhh
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPED-GNFKCPNCQSLQ-PYGLPSVCLIIEHFLEERFSD 273 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~-~~~~~~~~~~l~~l~~~~~~~ 273 (458)
..-++.|+||+.+++..++. .|+|.||..||...+. +...||.||+.+ ..+.++.......|+...|+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 34578999999999998877 8999999999987766 789999999976 445566666666666655543
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.90 E-value=6.1e-06 Score=73.83 Aligned_cols=60 Identities=30% Similarity=0.530 Sum_probs=49.9
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHH
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLE 268 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~ 268 (458)
.+.|.||.+.|..||++.|||+||..|..+-++....|-+|.+..... +.|...++.|+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~-f~V~~d~~kmL~ 255 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR-FWVVSDLQKMLN 255 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccc-eeHHhhHHHHHh
Confidence 468999999999999999999999999999888999999999876543 445555555554
No 76
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.90 E-value=1.5e-06 Score=86.84 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCce----EcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKPV----VLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv----~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.+--+||||++.+-.-+ ++.|.|+|...|+..|+ ..+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 35668999999988654 45999999999999995 578999987443
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=1.8e-05 Score=77.10 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=36.6
Q ss_pred CCcccccccc-ccCcE---E-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLEL-LYKPV---V-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~-l~~Pv---~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+..||+|+.. +..|- . .+|||.||.+||...|.. +...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 4579999984 22342 2 369999999999998864 55689999988753
No 78
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.86 E-value=9.3e-06 Score=72.69 Aligned_cols=61 Identities=26% Similarity=0.485 Sum_probs=49.0
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLLHFLLK 80 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~l~ 80 (458)
-.|.|.||.+.+..||++.|||.||..|..+-++ ....|-+|.+.....--+...++.+|.
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G~f~V~~d~~kmL~ 255 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ--KGDECGVCGKATYGRFWVVSDLQKMLN 255 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhc--cCCcceecchhhccceeHHhhHHHHHh
Confidence 3578999999999999999999999999988777 445799999887765555555555553
No 79
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.82 E-value=7.9e-06 Score=59.85 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPV 60 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~ 60 (458)
-...+.|||.+..|.+||. ..|||+|.+..|..++...+...||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4457899999999999999 68999999999999996656677998
No 80
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=6.7e-06 Score=87.83 Aligned_cols=52 Identities=31% Similarity=0.666 Sum_probs=45.4
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCCccCCCCCCc
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~~ 257 (458)
.+-++||+|..-.++-|.+.|||+||..|+..... ....||.|+..|....+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 35789999999999999999999999999998776 78899999999876543
No 81
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.8e-05 Score=80.21 Aligned_cols=74 Identities=24% Similarity=0.494 Sum_probs=59.8
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC-----CchhhHHHHHHHHHhhhhHHHHHH
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG-----LPSVCLIIEHFLEERFSDLYAERK 279 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~r~ 279 (458)
..++.|-||...|..||+++|||+||..||.+.+.....||.||..+... ....|..+..++..|++..+....
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~~s~ 160 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSSFSP 160 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhccch
Confidence 46889999999999999999999999999999888899999999987631 112256666788888877766433
No 82
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=97.74 E-value=2.2e-05 Score=53.38 Aligned_cols=31 Identities=32% Similarity=0.892 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 323 ~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
.|+.|.. +.|.||+|..|. +||||..|+...
T Consensus 2 ~C~~C~~--~~~~r~~C~~C~---dfDLC~~C~~~~ 32 (41)
T cd02337 2 TCNECKH--HVETRWHCTVCE---DYDLCITCYNTK 32 (41)
T ss_pred cCCCCCC--cCCCceECCCCc---chhhHHHHhCCC
Confidence 4899975 668999999999 999999999884
No 83
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1e-05 Score=86.42 Aligned_cols=61 Identities=25% Similarity=0.651 Sum_probs=51.3
Q ss_pred hhcchhhhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 6 HEIELADKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 6 ~~~~~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+...++..+..-+.||+|..-+.+.|.+.|||.||..|+...... +...||.|...|..
T Consensus 630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 630 DEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred cHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 34445667888999999999988888899999999999999987664 56789999999863
No 84
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=2e-05 Score=75.07 Aligned_cols=49 Identities=33% Similarity=0.773 Sum_probs=42.0
Q ss_pred CCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFP 69 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 69 (458)
.+-|-||..+|+.||++.|||+||..|....++ ....|.+|.+++...-
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc--cCCcceeccccccccc
Confidence 566999999999999999999999999988776 4457999998876443
No 85
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.62 E-value=6.6e-05 Score=58.94 Aligned_cols=49 Identities=24% Similarity=0.674 Sum_probs=36.7
Q ss_pred CCCcccccccccc------------CcEE-ccCCChhhHHhHHHHHhcC-CCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLY------------KPVV-LACGHISCFWCVYNAMNSW-HESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~------------~Pv~-~~CgH~FC~~Ci~~~~~~~-~~~~CP~Cr~~~~ 66 (458)
.+-.|.||...|. -|++ -.|+|.|+..||.+|+... ....||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3556777766654 2544 4799999999999999964 3467999998764
No 86
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=97.60 E-value=2.5e-05 Score=82.45 Aligned_cols=51 Identities=27% Similarity=0.567 Sum_probs=46.4
Q ss_pred ccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcC
Q 043080 321 GVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQ 379 (458)
Q Consensus 321 ~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~ 379 (458)
...|..|.+.||+|.||+|+.|. ++|+|..|+..+ |....|.+.|+|.++-
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~f---n~dlCq~CF~sg-----raak~hk~~~pM~Ey~ 653 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHF---NYDICQSCFFSG-----RAAKGHKMHYPMVEYC 653 (966)
T ss_pred hhhcchhhhCccceeeeeehhhc---ChhHHhhHhhhc-----ccccCCCCCCCceeee
Confidence 47899999999999999999999 999999999985 6666999999999973
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.7e-05 Score=76.13 Aligned_cols=46 Identities=28% Similarity=0.617 Sum_probs=38.4
Q ss_pred CccccccccccC--cE-EccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLYK--PV-VLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~~--Pv-~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+|.||++-|.. -+ .|+|+|.|+..||..|+.+. ...||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCC
Confidence 499999999973 33 39999999999999999974 455999988664
No 88
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=7.6e-05 Score=71.23 Aligned_cols=56 Identities=32% Similarity=0.718 Sum_probs=46.3
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHH
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIE 264 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~ 264 (458)
.+.|-||.++|..||+..|||.||..|....++....|++|.+.+... +.+...|.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~-~~~akeL~ 296 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS-FNVAKELL 296 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc-cchHHHHH
Confidence 356999999999999999999999999999998899999998876543 44444443
No 89
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=9.6e-05 Score=72.37 Aligned_cols=47 Identities=32% Similarity=0.918 Sum_probs=39.8
Q ss_pred CCCCcccccccccc-------------CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLY-------------KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 17 ~~~~~C~IC~~~l~-------------~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
..+-.|.||.+-+. +|-.++|||.|+..|++.|+.++ -+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq--QTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ--QTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence 57889999998843 34779999999999999999944 4899999985
No 90
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=8.7e-05 Score=79.59 Aligned_cols=49 Identities=33% Similarity=0.646 Sum_probs=42.8
Q ss_pred CCCCCccccccccccC-----cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYK-----PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~-----Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
......|+||.+.+.. |..++|||.||.+|+.+|+++ ..+||.||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhh
Confidence 3457899999999998 788999999999999999995 568999999553
No 91
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00012 Score=69.25 Aligned_cols=56 Identities=27% Similarity=0.594 Sum_probs=46.9
Q ss_pred hhhhcCCCCCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+.........|++|.+.-..|.+.. |||.||..||.....-...+.||.|..+..
T Consensus 231 ~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 231 FSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34455567889999999999999965 999999999999877666789999988764
No 92
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.1e-05 Score=73.27 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=41.7
Q ss_pred CCCCcccccccccCC-------------CceEcccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 205 SVDDLSCAACKKMLF-------------KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~-------------~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
...+-+|.||++-+. .|..|||||.++..|+.-|++....||.||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 446778999998743 247899999999999999999999999999985
No 93
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.33 E-value=2.3e-05 Score=82.93 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=40.1
Q ss_pred CCcccccccccCCCceEc---ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVL---NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
..-.||+|+..+.+-... +|+|.||..||..|-+....||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 445799999877764433 899999999999999989999999998754
No 94
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00012 Score=72.65 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=38.8
Q ss_pred cccccccccCCCc---eEcccCchhhHhhhhhccCCC-CCCCCCccCCCC
Q 043080 209 LSCAACKKMLFKP---VVLNCGHVFCELCLFVPEDGN-FKCPNCQSLQPY 254 (458)
Q Consensus 209 l~C~iC~~~~~~p---v~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~ 254 (458)
.+|.||++-|..- +.|||.|.|+..|+..|+... ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4899999999853 557999999999999999855 559999987654
No 95
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00014 Score=69.56 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=39.4
Q ss_pred CCCccccccccccC--c-EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYK--P-VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~--P-v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-..|.||++-|.+ . +++||.|.|+..|+.+|+.. -+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCCC
Confidence 34679999999863 3 45999999999999999984 4567999998874
No 96
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.29 E-value=0.00023 Score=55.93 Aligned_cols=33 Identities=27% Similarity=0.603 Sum_probs=27.9
Q ss_pred ceEc-ccCchhhHhhhhhccC---CCCCCCCCccCCC
Q 043080 221 PVVL-NCGHVFCELCLFVPED---GNFKCPNCQSLQP 253 (458)
Q Consensus 221 pv~l-~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~ 253 (458)
|+++ .|+|.|+..||.+|+. ....||+||+...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5555 8999999999999987 3579999998764
No 97
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00015 Score=69.39 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=40.9
Q ss_pred cccccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCCccCCCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPYG 255 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~ 255 (458)
-.|+||+.....|+.|+|+|.||.-||+.... ....|++||.++...
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35999999999999999999999999987655 556699999998754
No 98
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00022 Score=67.36 Aligned_cols=49 Identities=29% Similarity=0.760 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccC--CCCCCCCCccCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPED--GNFKCPNCQSLQP 253 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 253 (458)
.....+||+|.+.-..|.++ +|||.||..|+..... ..+.||.|+....
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999999999988 6999999999987644 6799999998764
No 99
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00017 Score=68.85 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=40.3
Q ss_pred CcccccccccCCC---ceEcccCchhhHhhhhhccC-CCCCCCCCccCCCC
Q 043080 208 DLSCAACKKMLFK---PVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPY 254 (458)
Q Consensus 208 ~l~C~iC~~~~~~---pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~ 254 (458)
...|.||+.-|.+ -++|||.|.|+..|+..|+. -...||+||..++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4789999998764 35679999999999999988 68899999998764
No 100
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00012 Score=78.51 Aligned_cols=47 Identities=32% Similarity=0.721 Sum_probs=42.7
Q ss_pred CCCcccccccccCCC-----ceEcccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 206 VDDLSCAACKKMLFK-----PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~-----pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
.....|+||.+.+.. |..++|||.||..|+..|++....||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346789999999998 89999999999999999999999999999944
No 101
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.10 E-value=0.00021 Score=52.36 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=30.2
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhhhhhccC--CCCCCCC
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPED--GNFKCPN 247 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~--~~~~CP~ 247 (458)
-.+.|||.+..|.+||.- .|||+|.+..|..++. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468899999999999986 9999999999999994 6788998
No 102
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.10 E-value=0.00058 Score=65.08 Aligned_cols=64 Identities=33% Similarity=0.584 Sum_probs=47.5
Q ss_pred CCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCchhHHHHHHHHHHchHHHHHHHHHH
Q 043080 19 EFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICHLLHFLLKKLYPLTYEKRERQV 94 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~ 94 (458)
.+.|++|..++++|+.++ |+|+||..||...+.. .-+.||.|...- .+|..+.|..-++++-+.
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd-----------vlld~l~pD~dk~~EvE~ 338 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD-----------VLLDGLTPDIDKKLEVEK 338 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc-----------chhhccCccHHHHHHHHH
Confidence 389999999999999985 8999999999988775 457899995421 345555665555544333
No 103
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00018 Score=50.80 Aligned_cols=46 Identities=30% Similarity=0.842 Sum_probs=39.2
Q ss_pred CccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..|.||.+--.+-|...|||. .|+.|-.+.++. ..-.||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 469999999999899999996 899999998874 4557999999764
No 104
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.93 E-value=0.00011 Score=77.99 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=40.0
Q ss_pred CCCccccccccccCcEE---ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVV---LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~---~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
..-.||+|+..+.+... ..|+|.||..||..|-+ ...+||+||..|.+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh--hcccCchhhhhhhee
Confidence 35579999998887655 57999999999999987 455899999988643
No 105
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.69 E-value=0.00074 Score=69.31 Aligned_cols=52 Identities=29% Similarity=0.846 Sum_probs=45.8
Q ss_pred hcCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+...+.|++|..++.+|+. +.|||.||..|+..|+.. ...||.|+.....
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQ 68 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccch
Confidence 447888999999999999999 599999999999999885 6689999887753
No 106
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.66 E-value=0.0023 Score=45.32 Aligned_cols=42 Identities=21% Similarity=0.504 Sum_probs=34.6
Q ss_pred ccccccc--cccCcEEccCC-----ChhhHHhHHHHHhcCCCCCCCCCC
Q 043080 21 KCCVCLE--LLYKPVVLACG-----HISCFWCVYNAMNSWHESNCPVCR 62 (458)
Q Consensus 21 ~C~IC~~--~l~~Pv~~~Cg-----H~FC~~Ci~~~~~~~~~~~CP~Cr 62 (458)
.|.||++ .-..|...||. |.++..|+.+|+...+...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 33467778874 889999999999987778899994
No 107
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.64 E-value=0.0021 Score=61.43 Aligned_cols=42 Identities=43% Similarity=1.061 Sum_probs=37.6
Q ss_pred cccccccccCCCceEc-ccCchhhHhhhhhcc-CCCCCCCCCcc
Q 043080 209 LSCAACKKMLFKPVVL-NCGHVFCELCLFVPE-DGNFKCPNCQS 250 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~-~~~~~CP~Cr~ 250 (458)
|.||+|..++++|+.+ .|+|.||..||...+ ...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999999 789999999998654 47899999965
No 108
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.50 E-value=0.0019 Score=66.36 Aligned_cols=49 Identities=35% Similarity=0.765 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
..+.+.|++|..++.+|+.. .|||.||..|+..|......||.|+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 55779999999999999994 99999999999999988899999987654
No 109
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.22 E-value=0.0035 Score=64.29 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=42.0
Q ss_pred CCCCccccccccccCcEEccCCChhhHHhHHHHHhc---CCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNS---WHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~---~~~~~CP~Cr~~~~ 66 (458)
.....|.+|.+...+++...|.|.||+.||.++... ....+||+|-..+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 356789999999999999999999999999777653 23477999988774
No 110
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=96.18 E-value=0.0011 Score=64.51 Aligned_cols=50 Identities=28% Similarity=0.781 Sum_probs=44.0
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQ 379 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~ 379 (458)
|.|+.|...++.|.||+|..|. +|.||+.|+..++.- +.|...|.|.+..
T Consensus 241 v~cs~c~srs~~gfry~cq~C~---nyqlcq~cfwrG~~g-----~~hsnqh~mke~S 290 (434)
T KOG4301|consen 241 VECSYCRSRSMMGFRYRCQQCH---NYQLCQQCFWRGHAG-----GSHSNQHQMKEYS 290 (434)
T ss_pred ccCcceecccccchhhhHhhcC---CccccchhhccccCC-----CCcchHHHHHHhh
Confidence 8999999999999999999999 999999999886443 4788888888764
No 111
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0033 Score=62.79 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=41.3
Q ss_pred CCCCccccccccccCcE-----E---ccCCChhhHHhHHHHHhcCC-----CCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPV-----V---LACGHISCFWCVYNAMNSWH-----ESNCPVCRNPYNH 67 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv-----~---~~CgH~FC~~Ci~~~~~~~~-----~~~CP~Cr~~~~~ 67 (458)
..+..|.||++.....+ . .+|.|.||..||..|..... .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34788999999998777 4 57999999999999985433 4679999987653
No 112
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.001 Score=47.11 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=38.2
Q ss_pred cccccccccCCCceEcccCch-hhHhhhhhccC-CCCCCCCCccCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHV-FCELCLFVPED-GNFKCPNCQSLQP 253 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~-~~~~CP~Cr~~~~ 253 (458)
-.|.||.+...+.|...|||. +|..|-.+.++ ....||+||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 459999999999988899995 79999888776 6778999998753
No 113
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0034 Score=61.92 Aligned_cols=49 Identities=33% Similarity=0.789 Sum_probs=40.9
Q ss_pred CCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.--.|-||+.-.++-+.+||.|. .|..|.....- ....||+||..+...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHH--hhcCCCccccchHhh
Confidence 35679999999999999999997 89999987653 445899999988643
No 114
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.01 E-value=0.0024 Score=64.46 Aligned_cols=49 Identities=29% Similarity=0.591 Sum_probs=39.9
Q ss_pred hcCCCCCccccccccccCcE----EccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPV----VLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv----~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
-.+.+--+||||++-+-.-| ++.|.|+|...|+..|+. .+||+||.-..
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 34556779999999997655 378999999999999876 47999997654
No 115
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.94 E-value=0.0055 Score=61.39 Aligned_cols=37 Identities=32% Similarity=0.755 Sum_probs=33.0
Q ss_pred CCCCCccccccccccCcEEccCCChhhHHhHHHHHhc
Q 043080 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNS 52 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~ 52 (458)
+++++.|+||...|.+|+.++|||+.|+.|....+.+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 4678899999999999999999999999999876654
No 116
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0042 Score=61.33 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=41.9
Q ss_pred CCCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.....|-||+.-.++-++|||-|. .|..|...+.-....||+||..+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 346789999999999999999996 799999887666788999999764
No 117
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.85 E-value=0.0019 Score=49.46 Aligned_cols=48 Identities=27% Similarity=0.675 Sum_probs=23.4
Q ss_pred CCcccccccccc----CcEE----ccCCChhhHHhHHHHHhcCCC---------CCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY----KPVV----LACGHISCFWCVYNAMNSWHE---------SNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~----~Pv~----~~CgH~FC~~Ci~~~~~~~~~---------~~CP~Cr~~~~ 66 (458)
++.|+||..++. .|+. ..|+..|+..||.+|+..... -.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999999865 2433 269999999999999884211 14999998774
No 118
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.82 E-value=0.0051 Score=44.06 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=38.0
Q ss_pred CCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
....|-.|...-...++++|||..|..|..- .....||.|..++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 3456778888888899999999999999863 3567899999987653
No 119
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.81 E-value=0.0061 Score=61.49 Aligned_cols=53 Identities=36% Similarity=0.773 Sum_probs=42.7
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCCCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQPTS 382 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~~~ 382 (458)
..|++|...-..-.+.+|..|+ +||||-.|+..+.... .|++.|....+.+..
T Consensus 15 y~C~~C~~dit~~i~ikCaeCp---~fdLCl~CFs~GaE~~-----~H~~~H~Yrim~~~s 67 (438)
T KOG0457|consen 15 YNCDYCSLDITGLIRIKCAECP---DFDLCLQCFSVGAETG-----KHQNDHPYRIMDTNS 67 (438)
T ss_pred CCCccHhHHhccceEEEeecCC---CcchhHHHHhcccccC-----CCCCCCCceeecCCC
Confidence 6799998533333458999998 9999999999986664 899999999887643
No 120
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=95.80 E-value=0.011 Score=40.92 Aligned_cols=40 Identities=28% Similarity=0.580 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCC
Q 043080 323 GCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKP 371 (458)
Q Consensus 323 ~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~ 371 (458)
.|+.|+..- ...||+|+.+. +++||..|+..+ ||...|..
T Consensus 2 ~C~~Cg~D~-t~vryh~~~~~---~~dLC~~CF~~G-----~f~~~~~s 41 (45)
T cd02336 2 HCFTCGNDC-TRVRYHNLKAK---KYDLCPSCYQEG-----RFPSNFQS 41 (45)
T ss_pred cccCCCCcc-CceEEEecCCC---ccccChHHHhCc-----CCCCCCcc
Confidence 589998543 36899999998 899999999995 55555544
No 121
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.012 Score=58.75 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=38.6
Q ss_pred CCccccccccccCc-----EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKP-----VVLACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 19 ~~~C~IC~~~l~~P-----v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
-.+||||++-+..| |.+.|||.|-..||.+|+.+.-...||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46899999998755 337899999999999999755567799997654
No 122
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.02 Score=57.38 Aligned_cols=46 Identities=28% Similarity=0.576 Sum_probs=34.5
Q ss_pred CCCCcccccccccCCCc---eEcccCchhhHhhhhhccC--------CCCCCCCCcc
Q 043080 205 SVDDLSCAACKKMLFKP---VVLNCGHVFCELCLFVPED--------GNFKCPNCQS 250 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~p---v~l~CgH~fC~~Cl~~~~~--------~~~~CP~Cr~ 250 (458)
...-+.|.||....... +.+||+|+||+.|+..+.. ....||.+.-
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34567899999877653 4569999999999988754 4567776544
No 123
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.52 E-value=0.0021 Score=49.22 Aligned_cols=46 Identities=33% Similarity=0.579 Sum_probs=22.4
Q ss_pred CcccccccccCC-C---ceEc----ccCchhhHhhhhhccC---C--------CCCCCCCccCCC
Q 043080 208 DLSCAACKKMLF-K---PVVL----NCGHVFCELCLFVPED---G--------NFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~-~---pv~l----~CgH~fC~~Cl~~~~~---~--------~~~CP~Cr~~~~ 253 (458)
++.|+||..++. . |+.+ .|+..|+..||..|+. . ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998765 2 4433 7999999999999975 1 135999998764
No 124
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.50 E-value=0.0072 Score=65.95 Aligned_cols=53 Identities=32% Similarity=0.689 Sum_probs=42.7
Q ss_pred hcCCCCCcccccccccc--C---cE--EccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLY--K---PV--VLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~--~---Pv--~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..+...-.|+||..++. + |- .-.|.|-|+.+|+.+|++..+.++||+||..++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34556677999998875 1 22 235999999999999999989999999998775
No 125
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.49 E-value=0.0055 Score=62.90 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=41.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC-----CCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-----GNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-----~~~~CP~Cr~~~~ 253 (458)
..+..|.+|.+...+++...|.|.||..|+..+.. ....||+|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 45678999999999999999999999999977654 4589999988664
No 126
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0042 Score=58.65 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=37.8
Q ss_pred CCcccccccccCCCc----------eEcccCchhhHhhhhhccC--CCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFKP----------VVLNCGHVFCELCLFVPED--GNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~p----------v~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 253 (458)
++-.|.||.+.+... ..|+|+|+|+..||..|-. +...||.|++.+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 345699998877644 4679999999999999865 6789999998663
No 127
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.35 E-value=0.0086 Score=59.50 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=40.7
Q ss_pred CCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCc
Q 043080 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS 70 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 70 (458)
.-.|.||-+-=.+--.-+|||..|..|+..|........||-||.+++....
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 3458899886655555689999999999998765556789999999975443
No 128
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.013 Score=58.64 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=41.5
Q ss_pred CcccccccccCCCc-----eEcccCchhhHhhhhhccC--CCCCCCCCccCCCCCCchh
Q 043080 208 DLSCAACKKMLFKP-----VVLNCGHVFCELCLFVPED--GNFKCPNCQSLQPYGLPSV 259 (458)
Q Consensus 208 ~l~C~iC~~~~~~p-----v~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~~~~~~~ 259 (458)
..+||||+.-+.-| +.+.|||.|-..|+++|+. ..+.||.|.....++.+..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~ 62 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP 62 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHH
Confidence 45799999988766 5569999999999999986 4578999987666554444
No 129
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.28 E-value=0.0086 Score=59.50 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=39.6
Q ss_pred cccccccccCCCceEcccCchhhHhhhhhccC--CCCCCCCCccCCCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPED--GNFKCPNCQSLQPYG 255 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~~~ 255 (458)
-.|.||-+--++-..-||||..|..|+..|.. ....||.||..+...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 46999998887766669999999999999985 478999999988654
No 130
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.01 Score=59.28 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCce-----E---cccCchhhHhhhhhccC--C-----CCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPV-----V---LNCGHVFCELCLFVPED--G-----NFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv-----~---l~CgH~fC~~Cl~~~~~--~-----~~~CP~Cr~~~~~ 254 (458)
..+..|.||++.....+ . .+|.|.||..|+..|-. . ...||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45778999999888765 3 47999999999999973 3 6899999986543
No 131
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.01 Score=60.57 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=37.6
Q ss_pred CCcccccccccCC-----------------CceEcccCchhhHhhhhhccC-CCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLF-----------------KPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~-----------------~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~ 254 (458)
....|+||+.... +-+.+||.|.|+..|+.+|+. .+..||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4567999997543 113449999999999999999 55699999998753
No 132
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.0074 Score=57.04 Aligned_cols=49 Identities=20% Similarity=0.517 Sum_probs=40.0
Q ss_pred CCCccccccccccCc----------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKP----------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~P----------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
++-.|.||..-+..- ..++|+|+|+..||..|.....+.+||.|...+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 456799999877543 4589999999999999988767778999987663
No 133
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.05 E-value=0.0091 Score=42.79 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=37.8
Q ss_pred CCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.....|-.|...-.+.++++|||..|..|+.-+ +-+.||.|...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~ 50 (55)
T PF14447_consen 4 QQPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE----RYNGCPFCGTPFE 50 (55)
T ss_pred cccceeEEEccccccccccccccceeeccccChh----hccCCCCCCCccc
Confidence 3456778889988889999999999999997532 3356999998874
No 134
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.79 E-value=0.027 Score=39.89 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=31.5
Q ss_pred ccccccc--cCCCceEcccC-----chhhHhhhhhccC--CCCCCCCCc
Q 043080 210 SCAACKK--MLFKPVVLNCG-----HVFCELCLFVPED--GNFKCPNCQ 249 (458)
Q Consensus 210 ~C~iC~~--~~~~pv~l~Cg-----H~fC~~Cl~~~~~--~~~~CP~Cr 249 (458)
.|.||+. .-.+|...||. |.++..||.+|+. ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 34467777885 7899999999986 556899995
No 135
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.78 E-value=0.027 Score=43.30 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=33.6
Q ss_pred ccccccccCC----CceEc-ccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 210 SCAACKKMLF----KPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 210 ~C~iC~~~~~----~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
+|+-|..-.. -|++. -|.|.|...||.+|+.....||++|+...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3555555332 13444 79999999999999999999999998764
No 136
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.0096 Score=45.33 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=27.5
Q ss_pred ceEc-ccCchhhHhhhhhccC---CCCCCCCCccCCC
Q 043080 221 PVVL-NCGHVFCELCLFVPED---GNFKCPNCQSLQP 253 (458)
Q Consensus 221 pv~l-~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~ 253 (458)
|.++ -|.|.|...||.+|+. ....||+||....
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5555 7999999999999986 5678999998754
No 137
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.021 Score=54.79 Aligned_cols=50 Identities=32% Similarity=0.714 Sum_probs=38.7
Q ss_pred ccccccc-cCCCceE-c---ccCchhhHhhhhhccC-CCCCCCCCccCCCCCCchh
Q 043080 210 SCAACKK-MLFKPVV-L---NCGHVFCELCLFVPED-GNFKCPNCQSLQPYGLPSV 259 (458)
Q Consensus 210 ~C~iC~~-~~~~pv~-l---~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~~~~ 259 (458)
.||+|.. .+.+|-+ + +|||..|.+|+...+. +...||.|...+....+++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 4999976 4556522 2 9999999999998876 7889999998876655554
No 138
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.74 E-value=0.014 Score=56.33 Aligned_cols=56 Identities=29% Similarity=0.570 Sum_probs=45.6
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCCCChhh
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQPTSLSD 385 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~~~~~~ 385 (458)
+.||.|...-....+.+|..|. .||||--|+..+... ..|++.|....|.+..++-
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~---~~DLC~pCF~~g~~t-----g~H~pyH~YRiietnsypI 61 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECP---AVDLCLPCFVNGIET-----GVHSPYHGYRIIETNSYPI 61 (432)
T ss_pred eeehHHHHhhhcceeeeeeccc---ccceehhhhhccccc-----cccCCCCCeeEeeccCccc
Confidence 6799998655555677899999 899999999997555 4899999999987766554
No 139
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.72 E-value=0.026 Score=39.49 Aligned_cols=43 Identities=33% Similarity=0.814 Sum_probs=21.4
Q ss_pred cccccccccC--cEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 22 CCVCLELLYK--PVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 22 C~IC~~~l~~--Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
||+|.+.+.. --. .+||+-.|++|+...+.. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 7888888731 111 478999999999987762 456799999876
No 140
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.71 E-value=0.021 Score=55.21 Aligned_cols=42 Identities=33% Similarity=0.793 Sum_probs=35.4
Q ss_pred cccccccccCC----CceEcccCchhhHhhhhhccCCCCCCCCCcc
Q 043080 209 LSCAACKKMLF----KPVVLNCGHVFCELCLFVPEDGNFKCPNCQS 250 (458)
Q Consensus 209 l~C~iC~~~~~----~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~ 250 (458)
..||||.+.+. .|..++|||.....|+.........||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44999998765 4667799999999999988776699999987
No 141
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.69 E-value=0.023 Score=53.35 Aligned_cols=44 Identities=34% Similarity=0.766 Sum_probs=31.3
Q ss_pred cccccccccC-CCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 209 LSCAACKKML-FKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 209 l~C~iC~~~~-~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
..|-.|...- ..|..| .|+|+||..|..... ...||.|++.+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 4577776543 345444 999999999997543 2389999998643
No 142
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.026 Score=57.67 Aligned_cols=49 Identities=27% Similarity=0.610 Sum_probs=37.0
Q ss_pred CCCCcccccccccc-----------------CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLY-----------------KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~-----------------~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+...-|+||..... +-+.++|.|.|.+.|+..||.. .+..||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 44566999986532 1234699999999999999983 3347999999864
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.43 E-value=0.018 Score=57.13 Aligned_cols=46 Identities=30% Similarity=0.645 Sum_probs=38.8
Q ss_pred CCCcccccccccc-CcEE---ccCCChhhHHhHHHHHhcCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLY-KPVV---LACGHISCFWCVYNAMNSWHESNCPVCRN 63 (458)
Q Consensus 18 ~~~~C~IC~~~l~-~Pv~---~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~ 63 (458)
-.+.|-.|.+.+- +|-. ++|.|.|+..|+...+.++...+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4688999999874 3322 89999999999999998888889999984
No 144
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.015 Score=44.29 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=34.0
Q ss_pred cccccccccc------------CcEEc-cCCChhhHHhHHHHHhcCC-CCCCCCCCCCCC
Q 043080 21 KCCVCLELLY------------KPVVL-ACGHISCFWCVYNAMNSWH-ESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~------------~Pv~~-~CgH~FC~~Ci~~~~~~~~-~~~CP~Cr~~~~ 66 (458)
+|-||.-.|. -|+++ -|.|.|...||.+|+.... .-.||+||..++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 6777766654 25553 4999999999999998543 346999998764
No 145
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.33 E-value=0.041 Score=53.43 Aligned_cols=51 Identities=29% Similarity=0.348 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCC---ceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCC
Q 043080 205 SVDDLSCAACKKMLFK---PVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGL 256 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~---pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 256 (458)
....+.|||....|.. -|.| +|||+|+..++...- ....||+|..++....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 3467899999999853 2334 999999999999884 4667999999987543
No 146
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.022 Score=55.82 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=43.7
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
..++-.||||.---.+.|..||+|.-|+.||.+++-+.+.|-.|+..+.
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3578889999998888999999999999999999889999999987654
No 147
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.14 Score=51.49 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=35.5
Q ss_pred CCCCCccccccccccCc---EEccCCChhhHHhHHHHHhc---CC---CCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKP---VVLACGHISCFWCVYNAMNS---WH---ESNCPVCRNP 64 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~P---v~~~CgH~FC~~Ci~~~~~~---~~---~~~CP~Cr~~ 64 (458)
.+.-+.|.||.+...-. +.++|+|+||+.|+..++.. .+ ..+||.+...
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 35678899999987532 34899999999999988762 22 2457765543
No 148
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.97 E-value=0.065 Score=41.27 Aligned_cols=33 Identities=30% Similarity=0.686 Sum_probs=27.0
Q ss_pred cEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 32 PVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 32 Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
|+. --|.|.|...||.+|+.. ...||++|+...
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhh--CCCCCCCCceeE
Confidence 444 359999999999999985 457999998764
No 149
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.048 Score=54.29 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=37.8
Q ss_pred cccccccccCCCc----eEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 209 LSCAACKKMLFKP----VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 209 l~C~iC~~~~~~p----v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
-.|.||..-|+.- -.+-|||.+...||..|+.....||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3588888877653 345899999999999999888889999988765
No 150
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.90 E-value=0.025 Score=61.87 Aligned_cols=46 Identities=28% Similarity=0.729 Sum_probs=41.1
Q ss_pred CccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..|.+|.+ ...++.+.|||.||..|+...+.......||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 77888899999999999999988766668999998775
No 151
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.012 Score=56.22 Aligned_cols=41 Identities=32% Similarity=0.835 Sum_probs=34.2
Q ss_pred CCccccccccccCcEEccCCC-hhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGH-ISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH-~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
...|.||.+..++-|.|+||| +-|..|-.+ ...||+||+-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHH
Confidence 678999999999999999999 479988654 23699998754
No 152
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.046 Score=54.06 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=37.3
Q ss_pred cccccccccCC------CceEcccCchhhHhhhhhccC-CCCCCCCCccCC
Q 043080 209 LSCAACKKMLF------KPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQ 252 (458)
Q Consensus 209 l~C~iC~~~~~------~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~ 252 (458)
+.|-||...|. .|..|.|||+||..|+..... ....||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 56889988765 588899999999999998876 567889999985
No 153
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.69 E-value=0.043 Score=51.58 Aligned_cols=43 Identities=26% Similarity=0.723 Sum_probs=30.0
Q ss_pred Cccccccccc-cCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELL-YKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l-~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.|-.|..-- .+|.. +.|+|+||..|...... ..||+|++.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee
Confidence 4466665433 34544 78999999999865432 27999999864
No 154
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.046 Score=54.41 Aligned_cols=44 Identities=30% Similarity=0.517 Sum_probs=32.6
Q ss_pred ccccccccCCCceEc----ccCchhhHhhhhhccC--CC-CCCCCCccCCC
Q 043080 210 SCAACKKMLFKPVVL----NCGHVFCELCLFVPED--GN-FKCPNCQSLQP 253 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l----~CgH~fC~~Cl~~~~~--~~-~~CP~Cr~~~~ 253 (458)
.|.||...+-.---| .|||+|...|+..|+. .. ..||.|+-.++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 599996655432222 5999999999999998 33 58999994443
No 155
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.39 E-value=0.061 Score=53.00 Aligned_cols=49 Identities=31% Similarity=0.688 Sum_probs=39.9
Q ss_pred cCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.+.+-+.||||.+.+..|+. .+=||.-|..|-.+ ....||.||.++...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGNI 93 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCccccccccH
Confidence 34567889999999999988 67799999999764 334799999998743
No 156
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.24 E-value=0.06 Score=47.29 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=35.9
Q ss_pred CCcccccccccCCCceEcc------------cCchh-hHhhhhhccC-------------------------------CC
Q 043080 207 DDLSCAACKKMLFKPVVLN------------CGHVF-CELCLFVPED-------------------------------GN 242 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~------------CgH~f-C~~Cl~~~~~-------------------------------~~ 242 (458)
++.+||||++.-.+.|+|- |+.+| ...||.++-+ ..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 4578999999999999984 44443 4567776532 24
Q ss_pred CCCCCCccCCCCC
Q 043080 243 FKCPNCQSLQPYG 255 (458)
Q Consensus 243 ~~CP~Cr~~~~~~ 255 (458)
..||+||..+...
T Consensus 81 L~CPLCRG~V~GW 93 (162)
T PF07800_consen 81 LACPLCRGEVKGW 93 (162)
T ss_pred ccCccccCceece
Confidence 6899999988653
No 157
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.017 Score=55.27 Aligned_cols=41 Identities=32% Similarity=0.625 Sum_probs=34.5
Q ss_pred CcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
...|.||+....+-+.|+|||. -|..|-.+ ...||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 6789999999999999999995 58888654 44899999854
No 158
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.08 E-value=0.082 Score=37.56 Aligned_cols=46 Identities=24% Similarity=0.666 Sum_probs=24.0
Q ss_pred CCccccccccccCcEE-ccCCChhhHH--hHHHHHhcCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVV-LACGHISCFW--CVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~-~~CgH~FC~~--Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
.+.|||....+..|+. ..|.|.-|+. -+.......+...||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999999 7899987643 23333334466789999763
No 159
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.32 Score=49.95 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=30.1
Q ss_pred CCcccccccccCC-----CceEcccCchhhHhhhhhccCCCCCCCCC
Q 043080 207 DDLSCAACKKMLF-----KPVVLNCGHVFCELCLFVPEDGNFKCPNC 248 (458)
Q Consensus 207 ~~l~C~iC~~~~~-----~pv~l~CgH~fC~~Cl~~~~~~~~~CP~C 248 (458)
.-..||.|.-.+. +-++-.|||-||..|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 3456999987654 33444799999999998887766656544
No 160
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.083 Score=51.60 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=37.8
Q ss_pred CCCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
+.-.||||+....+|.++. -|.+||..||.+++. +..+||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcc
Confidence 4567999999999998865 599999999999998 455899765443
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.074 Score=49.82 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=40.7
Q ss_pred CCCccccccccccCcEE----ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVV----LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~----~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
..+.||+|.+.|.+.+. -+|||+||..|+.+++. .-..||+|..++...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCcCccc
Confidence 67899999999986433 58999999999999887 445799999988654
No 162
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.071 Score=52.40 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=38.8
Q ss_pred CCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
.++-.||||.---...|..+|+|.-|+.||.+.+- +.+.|=-|...+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm--N~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM--NCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh--cCCeeeEeccee
Confidence 35678999998888889999999999999999877 455677776554
No 163
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.57 E-value=0.071 Score=37.36 Aligned_cols=42 Identities=24% Similarity=0.659 Sum_probs=21.0
Q ss_pred cccccccCCC--ceEc--ccCchhhHhhhhhccC-CCCCCCCCccCC
Q 043080 211 CAACKKMLFK--PVVL--NCGHVFCELCLFVPED-GNFKCPNCQSLQ 252 (458)
Q Consensus 211 C~iC~~~~~~--pv~l--~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~ 252 (458)
||+|.+.+.. --.+ +||.-+|..|+..... ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6778776631 1122 7899999999998886 688999999865
No 164
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.051 Score=53.84 Aligned_cols=48 Identities=31% Similarity=0.793 Sum_probs=37.4
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..+.....|.||++-.++.+.++|||+.| |..-+.. ...||+||..+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~---l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH---LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh---CCCCchhHHHHH
Confidence 44556778999999999999999999977 7655433 335999988654
No 165
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.53 E-value=0.12 Score=50.87 Aligned_cols=60 Identities=28% Similarity=0.535 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
.-+-+.||||...+..|+.- +=||..|..|-.+ ....||.||.++.. ..+..++.+++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 34568899999999999643 5589999999853 46789999998873 2566666666554
No 166
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.11 Score=42.14 Aligned_cols=28 Identities=21% Similarity=0.659 Sum_probs=24.1
Q ss_pred cCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 36 ACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 36 ~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
.|.|.|.+.||.+|++. ...||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlkt--r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT--RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh--cCcCCCcCcce
Confidence 69999999999999994 45799998764
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.21 E-value=0.13 Score=50.30 Aligned_cols=48 Identities=29% Similarity=0.719 Sum_probs=34.2
Q ss_pred CCcccccccccc--Cc-EE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY--KP-VV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~l~--~P-v~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+..||+|.+.+. +- .. .+||...|+.|+...-.. -.-+||.||..+..
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccc
Confidence 344999999874 22 22 689999999998764332 34579999998853
No 168
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.67 E-value=0.2 Score=48.57 Aligned_cols=50 Identities=22% Similarity=0.415 Sum_probs=39.1
Q ss_pred CCCCCccccccccccC--cEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYK--PVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~--Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
-...|.|||....|.. +++ .+|||+|+..+|...- ....||+|..+|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccC
Confidence 4678999999999853 333 4899999999998862 245699999999743
No 169
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.96 E-value=0.2 Score=34.31 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=25.4
Q ss_pred cccccccccCcEEcc---CCChhhHHhHHHHHhcCCCCCCCCC
Q 043080 22 CCVCLELLYKPVVLA---CGHISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~~Pv~~~---CgH~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
|.+|.+++..-+.-+ |+-.++..|+..+++......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778999999888854 9988999999999986555579987
No 170
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.13 Score=41.57 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=26.0
Q ss_pred ccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 225 NCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 225 ~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
.|.|.|+..||.+|++....||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 7999999999999999999999998753
No 171
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=0.17 Score=55.38 Aligned_cols=40 Identities=40% Similarity=0.804 Sum_probs=35.3
Q ss_pred cccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccC
Q 043080 209 LSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSL 251 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~ 251 (458)
-.|..|.-.|.-|++- .|||+|++.|+. .+...||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5899999999999765 999999999998 567899999763
No 172
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.57 E-value=0.077 Score=58.34 Aligned_cols=46 Identities=28% Similarity=0.523 Sum_probs=36.7
Q ss_pred CcccccccccCC-----CceE--cccCchhhHhhhhhccC--CCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLF-----KPVV--LNCGHVFCELCLFVPED--GNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~-----~pv~--l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 253 (458)
.-.|+||..++. -|-. -.|.|-|+..|+-+|++ +...||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456999998876 1222 26999999999999997 6789999998764
No 173
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.22 Score=50.05 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=40.0
Q ss_pred cCCCCCcccccccccc---CcEEccCCChhhHHhHHHHHhcCCC--CCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLY---KPVVLACGHISCFWCVYNAMNSWHE--SNCPVCRNPY 65 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~~~--~~CP~Cr~~~ 65 (458)
.+..-|.|||=.+.-. .|+.+.|||+.++.-+.+..+. +. ++||.|-...
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYCPVEQ 384 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCCCccc
Confidence 4567899999777653 6899999999999999886553 54 8899997654
No 174
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.07 E-value=0.11 Score=51.90 Aligned_cols=45 Identities=33% Similarity=0.708 Sum_probs=36.3
Q ss_pred CCCcccccccccCC-Cc---eEcccCchhhHhhhhhccC--CCCCCCCCcc
Q 043080 206 VDDLSCAACKKMLF-KP---VVLNCGHVFCELCLFVPED--GNFKCPNCQS 250 (458)
Q Consensus 206 ~~~l~C~iC~~~~~-~p---v~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~ 250 (458)
+-++.|..|.+.+- .| -.|||.|.|+..|+..++. ....||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34789999999764 33 3459999999999998765 6789999995
No 175
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.77 E-value=0.19 Score=49.30 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhcc--CCCCCCCCCccCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPE--DGNFKCPNCQSLQ 252 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~--~~~~~CP~Cr~~~ 252 (458)
.++...|.||-.-++-..++||+|..|.-|..+.- -..+.||+||...
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 45677899999999988899999999999987643 3788999999754
No 176
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.11 Score=54.82 Aligned_cols=41 Identities=39% Similarity=0.844 Sum_probs=33.7
Q ss_pred cCCCCCcccccccccc----CcEEccCCChhhHHhHHHHHhcCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLY----KPVVLACGHISCFWCVYNAMNSWHESNCP 59 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~----~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP 59 (458)
.+...+.|+||+..|. .||.+.|||+.|+.|+....+. +||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC
Confidence 3455678999988875 7999999999999999877663 577
No 177
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=0.17 Score=49.44 Aligned_cols=48 Identities=31% Similarity=0.489 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
..+.-.||+|.+...+|.++ --|-+||..|+..++.....||+-..+.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 33556799999999999888 4599999999999999999999876543
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.69 E-value=0.2 Score=54.95 Aligned_cols=44 Identities=32% Similarity=0.649 Sum_probs=37.9
Q ss_pred cccccccccCCCceEcccCchhhHhhhhhccC--CCCCCCCCccCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPED--GNFKCPNCQSLQP 253 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 253 (458)
+.|.+|.+ ...++...|||.||..|+...+. ....||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 88999999 88888899999999999998876 3447999998653
No 179
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.67 E-value=0.49 Score=41.66 Aligned_cols=20 Identities=30% Similarity=0.820 Sum_probs=16.9
Q ss_pred CCCccccccccccCcEEccC
Q 043080 18 DEFKCCVCLELLYKPVVLAC 37 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~C 37 (458)
++.+||||++.-.+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 35789999999999999754
No 180
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.18 Score=50.61 Aligned_cols=45 Identities=33% Similarity=0.633 Sum_probs=35.8
Q ss_pred CCcccccccccCC---CceEcccCchhhHhhhhhccC-C--CCCCCCCccC
Q 043080 207 DDLSCAACKKMLF---KPVVLNCGHVFCELCLFVPED-G--NFKCPNCQSL 251 (458)
Q Consensus 207 ~~l~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~-~--~~~CP~Cr~~ 251 (458)
..+.|||=.+.-. -|+.|.|||+.++.-+.+... + +++||.|=..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4578999777654 489999999999999988766 3 4899999543
No 181
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.12 Score=51.18 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=32.6
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
...|.||..-..+.+.+||||.-| |..-. +....||+||..+.
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 456999999999999999999865 54322 23455999998653
No 182
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.94 E-value=0.31 Score=41.58 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=41.0
Q ss_pred CCcccccccccCCCceEc----ccCchhhHhhhhhccC---CCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVL----NCGHVFCELCLFVPED---GNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l----~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 254 (458)
.-+.|-||.+...+...| -||-+.|..|....|+ ....||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 357899999999988888 4999999999988887 56789999988754
No 183
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=0.26 Score=53.98 Aligned_cols=41 Identities=34% Similarity=0.708 Sum_probs=35.3
Q ss_pred CCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
.-.|..|...|.-|++ ..|||.|+..|+.. +...||.|+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhcc-----CcccCCccchh
Confidence 3579999999999988 89999999999972 56689999774
No 184
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.53 Score=43.59 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=37.4
Q ss_pred ccccccccCC--CceEcccCchhhHhhhhhccC--------CCCCCCCCccCCCC
Q 043080 210 SCAACKKMLF--KPVVLNCGHVFCELCLFVPED--------GNFKCPNCQSLQPY 254 (458)
Q Consensus 210 ~C~iC~~~~~--~pv~l~CgH~fC~~Cl~~~~~--------~~~~CP~Cr~~~~~ 254 (458)
.|.+|...|. +.+.|.|-|.|...|+..+.. ....||.|..++-.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4999999887 467789999999999998864 46789999987643
No 185
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=88.82 E-value=1 Score=42.76 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=15.5
Q ss_pred hhHhhhhhccC---CCCCCCCCccCCCC
Q 043080 230 FCELCLFVPED---GNFKCPNCQSLQPY 254 (458)
Q Consensus 230 fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 254 (458)
.|..|-..+|. ..+.|..|..-+..
T Consensus 127 ~C~EC~R~vw~hGGrif~CsfC~~flCE 154 (314)
T PF06524_consen 127 VCIECERGVWDHGGRIFKCSFCDNFLCE 154 (314)
T ss_pred EeeeeecccccCCCeEEEeecCCCeeec
Confidence 35555544554 57889999775543
No 186
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.78 E-value=0.19 Score=41.35 Aligned_cols=30 Identities=33% Similarity=0.698 Sum_probs=24.6
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhh
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLF 236 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~ 236 (458)
+.-.|++|.+.+.+.+.. ||||.|+..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345699999998876544 999999999975
No 187
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.75 E-value=0.2 Score=54.10 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=41.3
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC---CCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED---GNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 254 (458)
.-.+.|+||...++.|+.+.|-|.||..|+...+. ....||+|+..+..
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 35678999999999999999999999999977655 46789999965543
No 188
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.51 E-value=0.14 Score=42.28 Aligned_cols=32 Identities=31% Similarity=0.766 Sum_probs=26.9
Q ss_pred CCCCCccccccccccCcEE--ccCCChhhHHhHH
Q 043080 16 FSDEFKCCVCLELLYKPVV--LACGHISCFWCVY 47 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~--~~CgH~FC~~Ci~ 47 (458)
+...-.|++|...+...+. .||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4567789999999987655 7999999999974
No 189
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.45 E-value=0.38 Score=47.30 Aligned_cols=50 Identities=22% Similarity=0.592 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
-++...|-||-+-+.--.++||+|..|..|..+.-.--..+.||.||.+.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 35567899999988777779999999999998754444567899999875
No 190
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.82 Score=44.17 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=33.3
Q ss_pred cccccccccc-Cc-EE---ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-KP-VV---LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-~P-v~---~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.||+|.--.+ .| +. -+|||..|.+|+.+.+.. +.-.||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhh
Confidence 5899985533 33 22 389999999999987764 6678999977653
No 191
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.98 E-value=0.26 Score=47.58 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=38.2
Q ss_pred CCCCcccccccccc-Cc-EE-ccCCChhhHHhHHHHHhc---------------------CCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLY-KP-VV-LACGHISCFWCVYNAMNS---------------------WHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~-~P-v~-~~CgH~FC~~Ci~~~~~~---------------------~~~~~CP~Cr~~~~ 66 (458)
...-.|.||+.-|. .| ++ ++|-|.|.+.|+.+++.. .....||+||..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 45678999999887 35 33 899999999999887661 01235999998875
No 192
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=0.6 Score=46.08 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=36.6
Q ss_pred CCcccccccccc------CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY------KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPY 65 (458)
Q Consensus 19 ~~~C~IC~~~l~------~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~ 65 (458)
.+.|-||.+.|. -|..+.|||+||..|+...+.. ....||-||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 456889988774 5777889999999999876653 555689999886
No 193
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.78 E-value=0.15 Score=54.99 Aligned_cols=54 Identities=26% Similarity=0.648 Sum_probs=44.6
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCC-CCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWH-ESNCPVCRNPYN 66 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~-~~~CP~Cr~~~~ 66 (458)
...+...+.|+||...++.|+.+.|-|.||..|+...+...+ ...||+|+..+.
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 355667888999999999999999999999999987766444 567999986653
No 194
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.02 E-value=0.23 Score=46.44 Aligned_cols=46 Identities=30% Similarity=0.774 Sum_probs=34.4
Q ss_pred CCcccccccc-cCCCc-eEc---c-cCchhhHhhhhhccC-CCCCCC--CCccCC
Q 043080 207 DDLSCAACKK-MLFKP-VVL---N-CGHVFCELCLFVPED-GNFKCP--NCQSLQ 252 (458)
Q Consensus 207 ~~l~C~iC~~-~~~~p-v~l---~-CgH~fC~~Cl~~~~~-~~~~CP--~Cr~~~ 252 (458)
.+-.||+|.. .+-+| +.+ | |-|.+|.+|+.+.+. +...|| -|.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3457999975 34455 322 4 999999999999877 678899 787644
No 195
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.18 Score=53.36 Aligned_cols=40 Identities=35% Similarity=0.799 Sum_probs=31.7
Q ss_pred CCCCcccccccccCC----CceEcccCchhhHhhhhhccCCCCCCC
Q 043080 205 SVDDLSCAACKKMLF----KPVVLNCGHVFCELCLFVPEDGNFKCP 246 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~----~pv~l~CgH~fC~~Cl~~~~~~~~~CP 246 (458)
+.+.+.|+||...|. .||.+-|||+.|..|+..... ..||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 345678999987765 699999999999999987654 3455
No 196
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.30 E-value=0.31 Score=33.73 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=25.8
Q ss_pred cccccccccCCCceEcccC-chhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 209 LSCAACKKMLFKPVVLNCG-HVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~Cg-H~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
+.|..|.-..+. .+.|. |-.|..|+...+..+..||+|..+++.+
T Consensus 3 ~nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 3 YNCKSCWFANKG--LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ----SS-S--SS--EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ccChhhhhcCCC--eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 346666655544 45676 7789999999999999999999988753
No 197
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.97 E-value=0.24 Score=35.15 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=21.4
Q ss_pred cccccccccCCCceEc-ccCchhhHhhhhhccC-----CCCCCCCCcc
Q 043080 209 LSCAACKKMLFKPVVL-NCGHVFCELCLFVPED-----GNFKCPNCQS 250 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~-----~~~~CP~Cr~ 250 (458)
|.||+....+..|+.. .|.|.-|-. +..++. +...||+|++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 6899999999999987 999986643 222222 5678999976
No 198
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.73 E-value=0.54 Score=45.58 Aligned_cols=43 Identities=35% Similarity=0.831 Sum_probs=34.5
Q ss_pred CCcccccccccc----CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY----KPVVLACGHISCFWCVYNAMNSWHESNCPVCRN 63 (458)
Q Consensus 19 ~~~C~IC~~~l~----~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~ 63 (458)
...||||.+.+. .|..++|||.....|+...... + .+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 344999999875 4556899999999999876664 4 89999977
No 199
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.70 E-value=0.96 Score=46.42 Aligned_cols=40 Identities=30% Similarity=0.670 Sum_probs=28.6
Q ss_pred CcccccccccCCCc----eEcccCchhhHhhhhhccC------CCCCCCC
Q 043080 208 DLSCAACKKMLFKP----VVLNCGHVFCELCLFVPED------GNFKCPN 247 (458)
Q Consensus 208 ~l~C~iC~~~~~~p----v~l~CgH~fC~~Cl~~~~~------~~~~CP~ 247 (458)
..+|.||..-...+ .+..|+|.||..|+.+++. ....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 56799999433322 2457999999999998776 4566764
No 200
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=85.43 E-value=0.72 Score=31.59 Aligned_cols=38 Identities=29% Similarity=0.613 Sum_probs=23.5
Q ss_pred cccccccCCCceEcc---cCchhhHhhhhhccCCCC--CCCCC
Q 043080 211 CAACKKMLFKPVVLN---CGHVFCELCLFVPEDGNF--KCPNC 248 (458)
Q Consensus 211 C~iC~~~~~~pv~l~---CgH~fC~~Cl~~~~~~~~--~CP~C 248 (458)
|.+|.++...-+.-+ |+-.++..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888877654 888899999999988433 79987
No 201
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.40 E-value=0.93 Score=38.72 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=40.8
Q ss_pred CCCccccccccccCcEEc----cCCChhhHHhHHHHHhcCCC-CCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVL----ACGHISCFWCVYNAMNSWHE-SNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~----~CgH~FC~~Ci~~~~~~~~~-~~CP~Cr~~~~~ 67 (458)
.-..|-||.+.-.+.-.+ =||-..|..|-...|+.... ..||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 467899999998877775 28999999999999886543 459999988764
No 202
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.05 E-value=1.9 Score=40.09 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCcccccccccc--CcEEccCCChhhHHhHHHHHhcC------CCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY--KPVVLACGHISCFWCVYNAMNSW------HESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~--~Pv~~~CgH~FC~~Ci~~~~~~~------~~~~CP~Cr~~~~ 66 (458)
.-.|.+|.-.|. +-+.+.|-|.|...|+.++.... ....||.|..++-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 346999999886 56779999999999999886632 2356999998874
No 203
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.84 E-value=0.78 Score=45.07 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=34.4
Q ss_pred CCCcccccccccCCCc----eEcccCchhhHhhhhhccC-CCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKP----VVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p----v~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~ 255 (458)
++++ ||+|.+.+... .--+||-..|+-|+...-+ -..+||.||..+...
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3444 99999876421 1138898899999865543 356899999987654
No 204
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=83.45 E-value=1 Score=30.29 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=21.7
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..+.. ....|+|.+|...+ |..|....
T Consensus 4 ~~C~~H~~---~~~~~~C~~C~~~~----C~~C~~~~ 33 (42)
T PF00643_consen 4 PKCPEHPE---EPLSLFCEDCNEPL----CSECTVSG 33 (42)
T ss_dssp SB-SSTTT---SBEEEEETTTTEEE----EHHHHHTS
T ss_pred ccCccCCc---cceEEEecCCCCcc----CccCCCCC
Confidence 56777763 22678999997555 99999985
No 205
>PHA02862 5L protein; Provisional
Probab=83.10 E-value=1.2 Score=38.61 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=35.6
Q ss_pred CccccccccccCcEEccCC-----ChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLYKPVVLACG-----HISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~~Pv~~~Cg-----H~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
-.|-||.+.-.+.+ .+|. ..-+..|+.+|++..++..|++|+.++.
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 36899998765443 4543 2468999999999888889999999885
No 206
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.89 E-value=1.6 Score=38.65 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=37.2
Q ss_pred CCCCccccccccccCcEEccCC--C---hhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLACG--H---ISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~Cg--H---~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
...-.|-||.+--. +...+|. . ..+.+|+.+|+...+...|++|+.++.
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34567999998754 3334543 3 348999999999888889999998874
No 207
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=0.84 Score=44.36 Aligned_cols=43 Identities=28% Similarity=0.596 Sum_probs=32.0
Q ss_pred CcccccccccC-CCceEcccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 208 DLSCAACKKML-FKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 208 ~l~C~iC~~~~-~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
...|--|...+ .--..++|.|+||..|... ...+.||.|-..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 45788887643 3445679999999999854 3478899997755
No 208
>PHA03096 p28-like protein; Provisional
Probab=80.28 E-value=1.2 Score=43.58 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=32.0
Q ss_pred Ccccccccccc-Cc-------EEccCCChhhHHhHHHHHhcCC-CCCCCCCCCC
Q 043080 20 FKCCVCLELLY-KP-------VVLACGHISCFWCVYNAMNSWH-ESNCPVCRNP 64 (458)
Q Consensus 20 ~~C~IC~~~l~-~P-------v~~~CgH~FC~~Ci~~~~~~~~-~~~CP~Cr~~ 64 (458)
-.|.||++... ++ +.-.|-|.||..|+..|..... ...||.||.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 67999998865 22 2237999999999999887542 2346666543
No 209
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.80 E-value=1 Score=43.91 Aligned_cols=55 Identities=27% Similarity=0.423 Sum_probs=40.8
Q ss_pred hhhhcCCCCCcccccccccc---CcEEccCCChhhHHhHHHHHhcC-CCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLY---KPVVLACGHISCFWCVYNAMNSW-HESNCPVCRNPY 65 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~-~~~~CP~Cr~~~ 65 (458)
.....+..-|+||+=.+.-. .|+.+.|||+.-..-+...-+.+ .++.||.|-...
T Consensus 328 p~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 328 PKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred CCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 33446678899999887764 68999999999998887754432 247799996543
No 210
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.77 E-value=4.1 Score=38.68 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCCc----eEcccCchhhHhhhhhccCCCCCCCCCccCCCCCC
Q 043080 205 SVDDLSCAACKKMLFKP----VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGL 256 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~p----v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 256 (458)
....+.|||-.-.+..- +..+|||+|-..-+.+. ....|++|+..+....
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 44678899887666543 33499999999888776 4778999999887654
No 211
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=78.40 E-value=1.4 Score=27.46 Aligned_cols=28 Identities=54% Similarity=1.209 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCC-cceeccCCccccCCCcchhhh
Q 043080 323 GCDYCGMSPIIG-ERYKCKDCVESIGFDLCEACH 355 (458)
Q Consensus 323 ~Cd~C~~~~i~g-~~~~C~~C~~~i~~~lC~~C~ 355 (458)
.|+.|+. ++.+ ..|+|..| +|.|...|.
T Consensus 2 ~C~~C~~-~~~~~~~Y~C~~C----df~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGK-PIDGGWFYRCSEC----DFDLHEECA 30 (30)
T ss_dssp --TTTS-----S--EEE-TTT---------HHHH
T ss_pred cCCcCCC-cCCCCceEECccC----CCccChhcC
Confidence 5888985 4444 78999999 688887773
No 212
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=78.14 E-value=1.3 Score=38.08 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=27.5
Q ss_pred CCccccccccccC--cEE-ccCC------ChhhHHhHHHHHh
Q 043080 19 EFKCCVCLELLYK--PVV-LACG------HISCFWCVYNAMN 51 (458)
Q Consensus 19 ~~~C~IC~~~l~~--Pv~-~~Cg------H~FC~~Ci~~~~~ 51 (458)
...|.||++.+.+ -|+ +.|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 7889999999877 666 6676 7899999999843
No 213
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.03 E-value=1 Score=43.28 Aligned_cols=37 Identities=24% Similarity=0.545 Sum_probs=31.8
Q ss_pred CCCccccccccccCcEEccC----CChhhHHhHHHHHhcCC
Q 043080 18 DEFKCCVCLELLYKPVVLAC----GHISCFWCVYNAMNSWH 54 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~C----gH~FC~~Ci~~~~~~~~ 54 (458)
..+.|.+|.+-|.+--+..| .|-||+-|-.++.+.++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 34899999999999877766 69999999999988764
No 214
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=76.92 E-value=1.1 Score=31.32 Aligned_cols=40 Identities=23% Similarity=0.550 Sum_probs=25.9
Q ss_pred ccccccccc--CcEEccCCC-----hhhHHhHHHHHhcCCCCCCCCC
Q 043080 22 CCVCLELLY--KPVVLACGH-----ISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 22 C~IC~~~l~--~Pv~~~CgH-----~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
|.||++.-. .|+..+|+- ..+..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678887754 256777642 4578899999998777789887
No 215
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=76.48 E-value=1.1 Score=49.12 Aligned_cols=55 Identities=27% Similarity=0.544 Sum_probs=42.5
Q ss_pred hhhhhccCCCCCcccccccccCC--CceEc--ccCchhhHhhhhhccC-------CCCCCCCCccC
Q 043080 197 EHKAENWVSVDDLSCAACKKMLF--KPVVL--NCGHVFCELCLFVPED-------GNFKCPNCQSL 251 (458)
Q Consensus 197 ~~~~~~~~~~~~l~C~iC~~~~~--~pv~l--~CgH~fC~~Cl~~~~~-------~~~~CP~Cr~~ 251 (458)
.++....+....+.|.||.+.+. .|+.- .|-|+|...||..|.. ....||.|+..
T Consensus 180 ~~~li~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 180 TQSLIEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HHHHHHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34445566678899999999876 45443 7899999999999975 46789999853
No 216
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.09 E-value=0.72 Score=44.64 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=35.3
Q ss_pred CCcccccccccCCC-c--eEcccCchhhHhhhhhccC-----------------------CCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFK-P--VVLNCGHVFCELCLFVPED-----------------------GNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~-p--v~l~CgH~fC~~Cl~~~~~-----------------------~~~~CP~Cr~~~~ 253 (458)
..-.|.||+.-|.. | ++++|-|-|+..|+.+++. ....||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34579999987764 4 3459999999999987653 2346999998764
No 217
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.63 E-value=3.4 Score=48.16 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=36.3
Q ss_pred CCCCccccccccc--c-CcEEccCCChhhHHhHHHHHhcC--------CCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELL--Y-KPVVLACGHISCFWCVYNAMNSW--------HESNCPVCRNPYNH 67 (458)
Q Consensus 17 ~~~~~C~IC~~~l--~-~Pv~~~CgH~FC~~Ci~~~~~~~--------~~~~CP~Cr~~~~~ 67 (458)
..+..|-||.-.. . ..+.+.|+|.|...|..+.+... +-..||+|...+.+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3466789997543 2 34569999999999998766532 22469999887754
No 218
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=74.73 E-value=1.6 Score=42.42 Aligned_cols=42 Identities=21% Similarity=0.580 Sum_probs=27.7
Q ss_pred cccccccccc-CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.|--|-..+. ---.++|.|+||..|...- ..+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~----~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD----SDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC----ccccCcCcccHHH
Confidence 4555654332 2234799999999998642 2357999976653
No 219
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.57 E-value=1.3 Score=43.10 Aligned_cols=44 Identities=36% Similarity=0.714 Sum_probs=34.8
Q ss_pred CCcccccccccCC---CceEcccCchhhHhhhhhccC---CCCCCCCCcc
Q 043080 207 DDLSCAACKKMLF---KPVVLNCGHVFCELCLFVPED---GNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~ 250 (458)
.-++|||=.+.-+ .|+.|.|||+.-..-+....+ -.+.||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4578999877655 488999999999988877655 4689999944
No 220
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=74.27 E-value=1.3 Score=50.80 Aligned_cols=51 Identities=29% Similarity=0.685 Sum_probs=42.1
Q ss_pred hhhcCCCCCcccccccccc-CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLY-KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~-~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
.+..+...+.|.||++++. .-....|||.+|..|+..|+. ....||.|...
T Consensus 1146 y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1146 YLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSI 1197 (1394)
T ss_pred HHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhh
Confidence 3456667789999999998 666789999999999999988 55679999643
No 221
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.96 E-value=1.6 Score=48.33 Aligned_cols=35 Identities=34% Similarity=0.656 Sum_probs=27.1
Q ss_pred CCCCccccccccc-CCCceEc-ccCchhhHhhhhhcc
Q 043080 205 SVDDLSCAACKKM-LFKPVVL-NCGHVFCELCLFVPE 239 (458)
Q Consensus 205 ~~~~l~C~iC~~~-~~~pv~l-~CgH~fC~~Cl~~~~ 239 (458)
.+..-.|.+|... +..|..+ +|||.|+..|+.+..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 3445679999875 5577655 999999999998754
No 222
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=68.92 E-value=1.4 Score=50.66 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=39.9
Q ss_pred CCcccccccccCC-CceEcccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 207 DDLSCAACKKMLF-KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 207 ~~l~C~iC~~~~~-~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
....|++|.+.+. .-....|||.+|..|...|......||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4458999999999 566679999999999999999999999998643
No 223
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=68.85 E-value=4.3 Score=44.87 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=38.9
Q ss_pred CCCCcccccccccc--CcEE--ccCCChhhHHhHHHHHhcC-----CCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLY--KPVV--LACGHISCFWCVYNAMNSW-----HESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~--~Pv~--~~CgH~FC~~Ci~~~~~~~-----~~~~CP~Cr~~~~ 66 (458)
...+.|.||.+.+. .||- ..|=|+|...||..|-+.. ....||.|+....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 46788999999875 5655 4688999999999997742 3567999985543
No 224
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=68.74 E-value=5.6 Score=30.74 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCcccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-.|.||.+-+- ++.+ ..|+-..|+.|..- ....+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCcc
Confidence 456999998753 4444 46899999999864 44447778999997775
No 225
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=67.37 E-value=3.8 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=24.4
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
+.+.||.|.+.|... .+...|............||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 468899999944321 2444455444443345679999764
No 226
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=65.38 E-value=5.8 Score=44.83 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=3.7
Q ss_pred hhHHHhcC
Q 043080 384 SDLINRIN 391 (458)
Q Consensus 384 ~~~~~~l~ 391 (458)
..++.-|+
T Consensus 626 ~~ll~vl~ 633 (784)
T PF04931_consen 626 QLLLDVLD 633 (784)
T ss_pred HHHHHHhc
Confidence 33444554
No 227
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=65.12 E-value=5.4 Score=35.34 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=34.4
Q ss_pred CCCcccccccccCCCceEcccCc-----hhhHhhhhhccC--CCCCCCCCccCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGH-----VFCELCLFVPED--GNFKCPNCQSLQ 252 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH-----~fC~~Cl~~~~~--~~~~CP~Cr~~~ 252 (458)
..+-.|-||.+... +..-||.. ..++.|+.+|.. +...|+.|+..+
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 35567999987754 33446664 348999999987 678899999866
No 228
>PHA03096 p28-like protein; Provisional
Probab=64.65 E-value=3.2 Score=40.68 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=29.6
Q ss_pred cccccccccCC-Cc-------eEcccCchhhHhhhhhccC---CCCCCCCCcc
Q 043080 209 LSCAACKKMLF-KP-------VVLNCGHVFCELCLFVPED---GNFKCPNCQS 250 (458)
Q Consensus 209 l~C~iC~~~~~-~p-------v~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~ 250 (458)
-.|.||++... .+ +.-.|-|.||..|+..|.. ....||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999998544 22 2228999999999998865 3445666654
No 229
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.09 E-value=13 Score=35.33 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=35.7
Q ss_pred CCCCccccccccccC----cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYK----PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFP 69 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~----Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 69 (458)
...|+|||-.-.+.. -+.-.|||+|-..-+.+. ....|++|.+.+....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh----hhccccccCCcccccC
Confidence 457899997766543 333689999998777653 4568999999986433
No 230
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.07 E-value=2.7 Score=39.30 Aligned_cols=48 Identities=29% Similarity=0.609 Sum_probs=33.3
Q ss_pred hhcCCCCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+.+...-.|.+|.+--..-+++||.|. +|..|-.. ...||+|+....
T Consensus 152 ~~~~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 152 VDNFKRMRSCRKCGEREATVLLLPCRHLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred hhhhhccccceecCcCCceEEeecccceEeccccccc------CccCCCCcChhh
Confidence 3333333349999987777666999995 89988542 346999987654
No 231
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=62.88 E-value=7.3 Score=30.29 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=6.2
Q ss_pred CCCCCCcccCCC
Q 043080 446 PQDDSDERSSDF 457 (458)
Q Consensus 446 ~~~~~~~~~~~~ 457 (458)
++++++++.++|
T Consensus 66 ed~e~d~d~D~f 77 (77)
T PF12253_consen 66 EDEEDDDDMDGF 77 (77)
T ss_pred ccccccccccCC
Confidence 334455555665
No 232
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.80 E-value=3.9 Score=38.25 Aligned_cols=39 Identities=28% Similarity=0.662 Sum_probs=30.2
Q ss_pred cccccccCCCceEcccCc-hhhHhhhhhccCCCCCCCCCccCCC
Q 043080 211 CAACKKMLFKPVVLNCGH-VFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 211 C~iC~~~~~~pv~l~CgH-~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
|-.|.+.-..-+++||-| .+|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 999988877766679998 489988753 456999987543
No 233
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=61.19 E-value=8.8 Score=36.67 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNP 64 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~ 64 (458)
-.-.++||+=...+..|+. ..|||+|=+.-|...+....+..||+=...
T Consensus 173 e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 173 EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3447889998888999988 789999999999998886556779976555
No 234
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=61.01 E-value=8.7 Score=37.66 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCCccccccccccCcEEccCCC-hhhHHhHHHH-HhcCCCCCCCCCCCCCCCCCchhHHHHHHHHHHchHHHHHHHHHH
Q 043080 17 SDEFKCCVCLELLYKPVVLACGH-ISCFWCVYNA-MNSWHESNCPVCRNPYNHFPSICHLLHFLLKKLYPLTYEKRERQV 94 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~CgH-~FC~~Ci~~~-~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~ 94 (458)
...+-|-+|..--+.....+|+| +||-.|.... ++ +...|++|...+.+...+...-+.+-..+......-..+..
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~k--ra~s~eie~ta~~ra~~i~d~dndf~~~la~v~l~v~~~~~ 211 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVK--RARSCEIEQTAVTRAGQIHDTDNDFAGQLAGVSLMVQKQQQ 211 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhh--hccccchhhhhhhhhhccccCCccccccccccchhhhhHHH
Q ss_pred HHHHHHhCCCCCCccccCCCCCCCcccccCCCCCCCCcchh----------hhcccccccCCCCCCcccccccccccCCC
Q 043080 95 AEEEKQLGHFSPQVGYNLFGSPTNKEVDILGKSLDSPSQQQ----------IKLYSESRFSGEGKSSPCMKSLEMTAESG 164 (458)
Q Consensus 95 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ps~~~~~ 164 (458)
..+.........-|....++ .++..+.+.-+.+... ..+.+.-..++.++......-.++.--.+
T Consensus 212 a~~~~~~~~~~s~f~~~~~~-----n~~~~~~~~~sss~~~~~s~~~~~~~~~~~~~~~ss~t~~~~~g~g~s~~~~~~~ 286 (394)
T KOG2113|consen 212 AQQQMQEAQQQSMFYRRAFG-----NSNPFNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESLSGTGLSRPSLGGG 286 (394)
T ss_pred HHHHHhhcCccchHHHhccc-----CCCccchhhccCCCcccccccccccchhhhhhhhccCCcccccccCCCccccCCc
Q ss_pred chhhhhhhhccccccccccchhhhcCCCCCch-------------hhhhhccCCCCCcccccccccCCCceEcccCch-h
Q 043080 165 DDAMLKLVTSSECSEATANSTAQECGLVGNDL-------------EHKAENWVSVDDLSCAACKKMLFKPVVLNCGHV-F 230 (458)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~C~iC~~~~~~pv~l~CgH~-f 230 (458)
..+..++...+.-+.......+.+.+...... ..+-...-.-..+.|-+|..-+..-+..+|+|. |
T Consensus 287 ~~~~~~~~~~~~~~~~~s~~~i~~~e~~s~~~~~~~a~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~ 366 (394)
T KOG2113|consen 287 QSAKQDLPTYDYWGTNNSLNDIMENEILSRKYDALSAWSSMGLEKREESPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLS 366 (394)
T ss_pred cccccCCCcCCccccCcchhhhhhhhhhhhhcchhhccccccchhccccccccchhhcccccccCceeeeEeecCCcccC
Q ss_pred hHhhhhhccCCCCCCCCCccCC
Q 043080 231 CELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 231 C~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
|..|.. +.....||+|....
T Consensus 367 ~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 367 PGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhhhhh--cccCCccccccccc
No 235
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=4.5 Score=36.29 Aligned_cols=47 Identities=26% Similarity=0.529 Sum_probs=33.5
Q ss_pred CcccccccccCCC---ce----EcccCchhhHhhhhhccCC-----------CCCCCCCccCCCC
Q 043080 208 DLSCAACKKMLFK---PV----VLNCGHVFCELCLFVPEDG-----------NFKCPNCQSLQPY 254 (458)
Q Consensus 208 ~l~C~iC~~~~~~---pv----~l~CgH~fC~~Cl~~~~~~-----------~~~CP~Cr~~~~~ 254 (458)
..-|.||.-+--. |- .+.||..|++-|+..|+++ -..||.|..++..
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3458888765332 21 2389999999999999871 2469999988754
No 236
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.91 E-value=3.8 Score=24.85 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=4.8
Q ss_pred cccccccCC
Q 043080 211 CAACKKMLF 219 (458)
Q Consensus 211 C~iC~~~~~ 219 (458)
||-|.....
T Consensus 3 CP~C~~~V~ 11 (26)
T PF10571_consen 3 CPECGAEVP 11 (26)
T ss_pred CCCCcCCch
Confidence 555555443
No 237
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=60.65 E-value=5.8 Score=46.39 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=34.9
Q ss_pred CCCccccccccc-CC-C-ceEcccCchhhHhhhhhccC----------CCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKM-LF-K-PVVLNCGHVFCELCLFVPED----------GNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~-~~-~-pv~l~CgH~fC~~Cl~~~~~----------~~~~CP~Cr~~~~ 253 (458)
..+-.|-||... |. . .+.|.|+|.|+..|....+. +-..||+|..++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 356679999763 33 2 36789999999999865433 4578999987654
No 238
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=57.81 E-value=7.7 Score=32.99 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=25.7
Q ss_pred cccCCCCC--CCCCCcceeccCCccccCCCcchh-hhcCC
Q 043080 322 VGCDYCGM--SPIIGERYKCKDCVESIGFDLCEA-CHNNP 358 (458)
Q Consensus 322 v~Cd~C~~--~~i~g~~~~C~~C~~~i~~~lC~~-C~~~~ 358 (458)
..|.+|+. +|-.|.+|-=.+.. -|.+|++ |...+
T Consensus 5 e~CsFcG~kIyPG~G~~fVR~DGk---vf~FcssKC~k~f 41 (131)
T PRK14891 5 RTCDYTGEEIEPGTGTMFVRKDGT---VLHFVDSKCEKNY 41 (131)
T ss_pred eeecCcCCcccCCCCcEEEecCCC---EEEEecHHHHHHH
Confidence 56999975 78889898888887 5677875 86554
No 239
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=57.44 E-value=1.2 Score=33.78 Aligned_cols=41 Identities=27% Similarity=0.564 Sum_probs=22.7
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
++.||.|...|.. .=|+-+|..|-..+. ....||.|..++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~-~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYK-KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEE-EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECccccccce-ecccCCCcccHHH
Confidence 3679999987543 227888998987543 4567999988764
No 240
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.96 E-value=8 Score=37.50 Aligned_cols=30 Identities=23% Similarity=0.685 Sum_probs=23.7
Q ss_pred CCChhhHHhHHHHHhcC-----------CCCCCCCCCCCCC
Q 043080 37 CGHISCFWCVYNAMNSW-----------HESNCPVCRNPYN 66 (458)
Q Consensus 37 CgH~FC~~Ci~~~~~~~-----------~~~~CP~Cr~~~~ 66 (458)
|....|++|+-+|+... ++-.||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 66788999999988732 3457999999885
No 241
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.41 E-value=9.9 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.567 Sum_probs=33.0
Q ss_pred Ccccccccccc-----CcEE--ccCCChhhHHhHHHHHhcC----CC-----CCCCCCCCCCC
Q 043080 20 FKCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSW----HE-----SNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~----~~-----~~CP~Cr~~~~ 66 (458)
-.|-||..+-. +.+. ..||..|+.-|+..|++.. .+ -.||.|..++.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34777766533 3333 5799999999999998832 11 24999988875
No 242
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=9 Score=44.10 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.9
Q ss_pred hhHHhHHHHHh
Q 043080 41 SCFWCVYNAMN 51 (458)
Q Consensus 41 FC~~Ci~~~~~ 51 (458)
.|..|....-+
T Consensus 1271 CCsECAltCHk 1281 (3015)
T KOG0943|consen 1271 CCSECALTCHK 1281 (3015)
T ss_pred hhHHHHHHhcc
Confidence 35666655433
No 243
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.65 E-value=7.8 Score=40.66 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=30.3
Q ss_pred CCCCccccccccccC-cEEccCCChhhHHhHHHHHhc
Q 043080 17 SDEFKCCVCLELLYK-PVVLACGHISCFWCVYNAMNS 52 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~-Pv~~~CgH~FC~~Ci~~~~~~ 52 (458)
....+|.||.+.+.. .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345889999999885 556899999999999998874
No 244
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.27 E-value=8.4 Score=40.42 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=28.6
Q ss_pred CCcccccccccCCC-ceEcccCchhhHhhhhhccC
Q 043080 207 DDLSCAACKKMLFK-PVVLNCGHVFCELCLFVPED 240 (458)
Q Consensus 207 ~~l~C~iC~~~~~~-pv~l~CgH~fC~~Cl~~~~~ 240 (458)
....|.||...+.. .+.+.|||.||..|+..++.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 45779999998885 66669999999999998765
No 245
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=52.74 E-value=3.8 Score=28.49 Aligned_cols=41 Identities=24% Similarity=0.745 Sum_probs=22.6
Q ss_pred cccccccccCcEEccCC-ChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 22 CCVCLELLYKPVVLACG-HISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 22 C~IC~~~l~~Pv~~~Cg-H~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
|.-|.- .+--.+.|. |..|..|+...+. .+..||+|..++.
T Consensus 5 CKsCWf--~~k~Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCWF--ANKGLIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLP 46 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-S--SSSEETTTTEE--
T ss_pred Chhhhh--cCCCeeeecchhHHHHHHHHHhc--cccCCCcccCcCc
Confidence 444442 233345674 7889999988776 5567999988765
No 246
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=52.72 E-value=11 Score=38.13 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=22.8
Q ss_pred CCChhhHHhHHHHHhcC-----------CCCCCCCCCCCCC
Q 043080 37 CGHISCFWCVYNAMNSW-----------HESNCPVCRNPYN 66 (458)
Q Consensus 37 CgH~FC~~Ci~~~~~~~-----------~~~~CP~Cr~~~~ 66 (458)
|.-..|..|+-+|+... ++-.||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 55567899999998732 3456999999875
No 247
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=51.87 E-value=17 Score=25.93 Aligned_cols=25 Identities=28% Similarity=0.796 Sum_probs=15.1
Q ss_pred ccCchhhHhhhhhccCCCCCCCCCc
Q 043080 225 NCGHVFCELCLFVPEDGNFKCPNCQ 249 (458)
Q Consensus 225 ~CgH~fC~~Cl~~~~~~~~~CP~Cr 249 (458)
.|++.||..|=.=.-.....||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 7889999999654444677899884
No 248
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=50.78 E-value=20 Score=30.96 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCcccccccccCCC--ceE-cccC------chhhHhhhhhccCCCCCCC
Q 043080 207 DDLSCAACKKMLFK--PVV-LNCG------HVFCELCLFVPEDGNFKCP 246 (458)
Q Consensus 207 ~~l~C~iC~~~~~~--pv~-l~Cg------H~fC~~Cl~~~~~~~~~CP 246 (458)
-...|.||.+.+.+ -|+ ++|| |.||..|+.+|.+....=|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDP 73 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDP 73 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCC
Confidence 46789999998776 443 4776 7899999999954333333
No 249
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.24 E-value=13 Score=26.72 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCccccccccc--cCcEE--ccCCChhhHHhHHH
Q 043080 19 EFKCCVCLELL--YKPVV--LACGHISCFWCVYN 48 (458)
Q Consensus 19 ~~~C~IC~~~l--~~Pv~--~~CgH~FC~~Ci~~ 48 (458)
.-.|++|.+.| .+.++ -.||-.|+++|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34699999999 55655 46999999999764
No 250
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.23 E-value=14 Score=26.68 Aligned_cols=45 Identities=24% Similarity=0.497 Sum_probs=30.2
Q ss_pred ccccccccccCc--EEccCCC--hhhHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLYKP--VVLACGH--ISCFWCVYNAMNSWHESNCPVCRNPYNHFP 69 (458)
Q Consensus 21 ~C~IC~~~l~~P--v~~~CgH--~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 69 (458)
.|-.|...|..- -..-|.+ +||..|....+. ..||-|...+..++
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~----~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN----GVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc----CcCcCCCCccccCC
Confidence 466666665422 2344553 799999988664 37999999886544
No 251
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=49.93 E-value=10 Score=38.41 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=21.2
Q ss_pred chhhHhhhhhccC-------------CCCCCCCCccCCCC
Q 043080 228 HVFCELCLFVPED-------------GNFKCPNCQSLQPY 254 (458)
Q Consensus 228 H~fC~~Cl~~~~~-------------~~~~CP~Cr~~~~~ 254 (458)
...|..|+-+|+. +.-.||+||+.+..
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4458999988764 67789999998754
No 252
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.10 E-value=11 Score=42.18 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=30.3
Q ss_pred cCCCCCcccccccccc-CcEE-ccCCChhhHHhHHHHHh
Q 043080 15 AFSDEFKCCVCLELLY-KPVV-LACGHISCFWCVYNAMN 51 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~-~Pv~-~~CgH~FC~~Ci~~~~~ 51 (458)
.++..-.|.+|...+. +|.. .+|||.|++.|+.+.+.
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4567788999998864 6755 79999999999988766
No 253
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=49.04 E-value=12 Score=41.20 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=49.0
Q ss_pred CCCCCcccccccccCCCceE-cccCchhhHhhhhhcc----CCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 204 VSVDDLSCAACKKMLFKPVV-LNCGHVFCELCLFVPE----DGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 204 ~~~~~l~C~iC~~~~~~pv~-l~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
...-.|.||++...++-|.. ..|.|.-|..-+.-.. .....||+|.+......+.+...+.+++...
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~ 373 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSC 373 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhc
Confidence 34456899999888877654 4888866554332111 2678899999999888888888888888876
No 254
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=48.60 E-value=17 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.3
Q ss_pred cceeccCCccccCCCcchhhhcCC
Q 043080 335 ERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 335 ~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..++|.+|...+ |..|....
T Consensus 11 ~~~fC~~~~~~i----C~~C~~~~ 30 (39)
T cd00021 11 LSLFCETDRALL----CVDCDLSV 30 (39)
T ss_pred eEEEeCccChhh----hhhcChhh
Confidence 468999997555 99997653
No 255
>PLN02189 cellulose synthase
Probab=46.39 E-value=13 Score=42.56 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=35.8
Q ss_pred cccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.|.||.+-+- +|.+ -.|+--.|+.|. ++.+..++..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 8999998854 3433 359999999999 5666668888999998886
No 256
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=45.71 E-value=13 Score=28.33 Aligned_cols=36 Identities=22% Similarity=0.522 Sum_probs=24.8
Q ss_pred cceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 335 ERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 335 ~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
.-|+|.+|...-..-+|..|+... -|.+|.+..+..
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~----------~H~gH~~~~~~~ 47 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANS----------CHEGHRVVYYRS 47 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTS----------GGGGSSEEEEE-
T ss_pred EEEECccCCCCCCEEEchhhCCCC----------CcCCCcEEEEEe
Confidence 457799998544577899997775 446888877654
No 257
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.67 E-value=7.5 Score=38.07 Aligned_cols=30 Identities=30% Similarity=0.947 Sum_probs=23.0
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcch-hhhcCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCE-ACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~-~C~~~~ 358 (458)
..|..|+..+ .+|.|..| ++-+|+ .||..|
T Consensus 8 ~~C~ic~vq~---~~YtCPRC----n~~YCsl~CYr~h 38 (383)
T KOG4317|consen 8 LACGICGVQK---REYTCPRC----NLLYCSLKCYRNH 38 (383)
T ss_pred eecccccccc---ccccCCCC----CccceeeeeecCC
Confidence 5677777544 46999999 567799 599998
No 258
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.40 E-value=15 Score=42.28 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=36.2
Q ss_pred cccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.|.||.+.+- +|.+ -.||--.|+.|. ++.+..++..||.|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 7999998753 3433 479999999999 6677678888999998886
No 259
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=44.33 E-value=17 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=25.3
Q ss_pred CcccccccccC--CCceEc--ccCchhhHhhhhhc
Q 043080 208 DLSCAACKKML--FKPVVL--NCGHVFCELCLFVP 238 (458)
Q Consensus 208 ~l~C~iC~~~~--~~pv~l--~CgH~fC~~Cl~~~ 238 (458)
.-.|++|.+.| .+.++. .||-.+++.|....
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 45699999999 567766 89999999998754
No 260
>PLN02436 cellulose synthase A
Probab=43.87 E-value=15 Score=42.19 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=35.8
Q ss_pred cccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.|.||.+-+- +|.+ -.|+-..|+.|. ++.+..++..||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 8999998763 3443 359999999999 5666668888999998886
No 261
>PHA02862 5L protein; Provisional
Probab=43.70 E-value=17 Score=31.67 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=32.5
Q ss_pred ccccccccCCCceEcccCc-----hhhHhhhhhccC--CCCCCCCCccCCC
Q 043080 210 SCAACKKMLFKPVVLNCGH-----VFCELCLFVPED--GNFKCPNCQSLQP 253 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l~CgH-----~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 253 (458)
.|-||...-... .-||.. -.++.|+.+|+. +...|+.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 588888875444 346654 358999999987 6789999998774
No 262
>smart00336 BBOX B-Box-type zinc finger.
Probab=43.28 E-value=25 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=19.6
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
..|..+.. ....++|.+|...| |..|...
T Consensus 4 ~~C~~h~~---~~~~~~C~~c~~~i----C~~C~~~ 32 (42)
T smart00336 4 PKCDSHGD---EPAEFFCEECGALL----CRTCDEA 32 (42)
T ss_pred CcCCCCCC---CceEEECCCCCccc----ccccChh
Confidence 44665542 23467899997655 9999766
No 263
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=43.23 E-value=14 Score=29.64 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=29.3
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.-.|.+|...+.++ ||.||+.|.- ....|.+|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc----ccCcccccCCeec
Confidence 34699999887775 7889999975 3457999998763
No 264
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=43.16 E-value=22 Score=22.08 Aligned_cols=27 Identities=41% Similarity=0.905 Sum_probs=18.7
Q ss_pred ccCCCCCCCCCCc-ceeccCCccccCCCcchhh
Q 043080 323 GCDYCGMSPIIGE-RYKCKDCVESIGFDLCEAC 354 (458)
Q Consensus 323 ~Cd~C~~~~i~g~-~~~C~~C~~~i~~~lC~~C 354 (458)
.|+.|+ ..+.|. .|+|..|. |.|-..|
T Consensus 2 ~C~~C~-~~~~~~~~Y~C~~c~----f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCR-RKIDGFYFYHCSECC----FTLHVRC 29 (30)
T ss_pred CCCCCC-CCcCCCEeEEeCCCC----CeEcCcc
Confidence 588886 455666 89999994 5555444
No 265
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.08 E-value=13 Score=35.99 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=22.6
Q ss_pred cCchhhHhhhhhccC-------------CCCCCCCCccCCCC
Q 043080 226 CGHVFCELCLFVPED-------------GNFKCPNCQSLQPY 254 (458)
Q Consensus 226 CgH~fC~~Cl~~~~~-------------~~~~CP~Cr~~~~~ 254 (458)
|-...|..|+.+|+. ++-.||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 445678999988763 67899999997754
No 266
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=41.95 E-value=14 Score=28.60 Aligned_cols=46 Identities=24% Similarity=0.574 Sum_probs=19.3
Q ss_pred CcccccccccCC-----CceEc--ccCchhhHhhhhhcc-CCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLF-----KPVVL--NCGHVFCELCLFVPE-DGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~-----~pv~l--~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~ 253 (458)
.-.|.||.+-.- ++.+. .|+-..|+.|++--. .+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 446999987543 33333 788888999996433 37889999997664
No 267
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=41.55 E-value=11 Score=35.48 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=32.6
Q ss_pred CCcccccccccc-Cc-EE---c-cCCChhhHHhHHHHHhcCCCCCCC--CCCCC
Q 043080 19 EFKCCVCLELLY-KP-VV---L-ACGHISCFWCVYNAMNSWHESNCP--VCRNP 64 (458)
Q Consensus 19 ~~~C~IC~~~l~-~P-v~---~-~CgH~FC~~Ci~~~~~~~~~~~CP--~Cr~~ 64 (458)
+-.||||+.--+ .| |. - .|-|..|-+|+.+.+.. +...|| -|.+-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kI 62 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKI 62 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHH
Confidence 457999996533 44 22 2 49999999999998875 667799 66543
No 268
>PLN02195 cellulose synthase A
Probab=41.19 E-value=20 Score=40.86 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=36.5
Q ss_pred Ccccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 20 FKCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 20 ~~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
-.|.||.+.+- +|.+ -.|+-..|+.|. ++.+..++..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 36999998653 4544 579999999999 6677778888999998886
No 269
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=41.18 E-value=35 Score=33.54 Aligned_cols=24 Identities=25% Similarity=0.764 Sum_probs=15.9
Q ss_pred chhhHhhhhhccCCCCCCCCCccCC
Q 043080 228 HVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 228 H~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
.+||. |-.....+...||.|...+
T Consensus 295 Ps~Ca-CHs~~~~gGy~CP~CktkV 318 (421)
T COG5151 295 PSVCA-CHSEVKGGGYECPVCKTKV 318 (421)
T ss_pred cccee-eeeeeccCceeCCccccee
Confidence 34553 5555556788899998765
No 270
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.81 E-value=16 Score=27.26 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.2
Q ss_pred hhhHHhHHHHHhc
Q 043080 40 ISCFWCVYNAMNS 52 (458)
Q Consensus 40 ~FC~~Ci~~~~~~ 52 (458)
-||+.|+..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 271
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.80 E-value=21 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=21.2
Q ss_pred CChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 38 GHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 38 gH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.|+||..|....+. -.||-|...+...
T Consensus 28 EcTFCadCae~~l~----g~CPnCGGelv~R 54 (84)
T COG3813 28 ECTFCADCAENRLH----GLCPNCGGELVAR 54 (84)
T ss_pred eeehhHhHHHHhhc----CcCCCCCchhhcC
Confidence 47899999986655 2699999988644
No 272
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=40.33 E-value=15 Score=34.00 Aligned_cols=47 Identities=17% Similarity=0.412 Sum_probs=38.7
Q ss_pred CcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 208 DLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
-..|.+|..+...-+.- +||-.+...|+..+++....||.|+--.+.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 35799999998887655 788788899999999989999999765544
No 273
>PF14353 CpXC: CpXC protein
Probab=39.38 E-value=16 Score=31.12 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=25.2
Q ss_pred CcccccccccCCCceEcccCchhhHhhhhhccC---CCCCCCCCccCCCC
Q 043080 208 DLSCAACKKMLFKPVVLNCGHVFCELCLFVPED---GNFKCPNCQSLQPY 254 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 254 (458)
+++||.|...+.-.+...-.-..=..=....+. ....||.|+..+..
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 367999988877554332111111111122222 46789999987643
No 274
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.68 E-value=11 Score=22.06 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=4.7
Q ss_pred CCCCCCCCcc
Q 043080 241 GNFKCPNCQS 250 (458)
Q Consensus 241 ~~~~CP~Cr~ 250 (458)
....||.|+.
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 3444555544
No 275
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=37.71 E-value=31 Score=33.08 Aligned_cols=22 Identities=27% Similarity=0.729 Sum_probs=10.7
Q ss_pred ccccccccCCCceEcccCchhh
Q 043080 210 SCAACKKMLFKPVVLNCGHVFC 231 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l~CgH~fC 231 (458)
.|-.|..+-+-|+-..||.+-|
T Consensus 53 FCYFC~s~qrlp~Ca~Cgk~KC 74 (314)
T PF06524_consen 53 FCYFCQSVQRLPMCAHCGKTKC 74 (314)
T ss_pred eeehhhhhhcCchhhhcCCeee
Confidence 3555555555555445554433
No 276
>PLN02400 cellulose synthase
Probab=37.60 E-value=20 Score=41.34 Aligned_cols=45 Identities=22% Similarity=0.469 Sum_probs=36.1
Q ss_pred cccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.|.||.+-+- +|.+ -.|+-..|+.|. ++.++.++..||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 8999998753 3443 479999999998 5666667888999998886
No 277
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.42 E-value=13 Score=36.00 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=29.3
Q ss_pred CCCcccccccccCCCceEccc----CchhhHhhhhhccC
Q 043080 206 VDDLSCAACKKMLFKPVVLNC----GHVFCELCLFVPED 240 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~C----gH~fC~~Cl~~~~~ 240 (458)
..-|.|.+|.+.|.+--.+.| .|-||.-|-.+.++
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 456999999999999877777 59999999887765
No 278
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.72 E-value=34 Score=26.04 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred cCchhhHhhhhhccCCCCCCCCCccCCCCCCchh
Q 043080 226 CGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSV 259 (458)
Q Consensus 226 CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~ 259 (458)
=.|+||..|.+..+ ...||-|...+..+..++
T Consensus 27 fEcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 27 FECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred EeeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 34789999998654 356999998876654444
No 279
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.09 E-value=11 Score=37.24 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=22.5
Q ss_pred CcccccccccCCCceEccc---C--chhhHhhhhhccCCCCCCCCCccCC
Q 043080 208 DLSCAACKKMLFKPVVLNC---G--HVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l~C---g--H~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
.-.||||...-.-.++..= | +.+|..|-..|--....||.|...-
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 4689999987665555432 3 4569999999988888999998754
No 280
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=35.40 E-value=29 Score=38.44 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=38.6
Q ss_pred CCCccccccccc--cCcEEccCCC-----hhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELL--YKPVVLACGH-----ISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l--~~Pv~~~CgH-----~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.-+|.||..-- -+|..-||.. ..+++|+.+|+.-.++.+|-+|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 457899998553 4788877643 368999999999888899999998873
No 281
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=34.63 E-value=35 Score=36.88 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=8.2
Q ss_pred ccCchhhHhhhhh
Q 043080 225 NCGHVFCELCLFV 237 (458)
Q Consensus 225 ~CgH~fC~~Cl~~ 237 (458)
+-.|.|-+.|--.
T Consensus 697 NikhlfFq~c~gE 709 (1001)
T COG5406 697 NIKHLFFQECNGE 709 (1001)
T ss_pred cchhheeccCCce
Confidence 4567777777544
No 282
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.41 E-value=29 Score=22.06 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=7.5
Q ss_pred CCCCCCCCcc
Q 043080 241 GNFKCPNCQS 250 (458)
Q Consensus 241 ~~~~CP~Cr~ 250 (458)
....||+|+.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4567999976
No 283
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.03 E-value=26 Score=40.24 Aligned_cols=47 Identities=30% Similarity=0.593 Sum_probs=36.8
Q ss_pred CCcccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-.|.||.+-+- +|.+ -.|+-..|+.|. ++.+..++..||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 456999998753 3443 469999999999 6666667888999998886
No 284
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=32.93 E-value=30 Score=33.54 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=37.2
Q ss_pred CCCCccccccccccC-cE--------EccCCChhhHHhHH-HHHhcC--------CCCCCCCCCCCCCCCCchhHH
Q 043080 17 SDEFKCCVCLELLYK-PV--------VLACGHISCFWCVY-NAMNSW--------HESNCPVCRNPYNHFPSICHL 74 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~-Pv--------~~~CgH~FC~~Ci~-~~~~~~--------~~~~CP~Cr~~~~~~~~~~~~ 74 (458)
...+.|.+|...+.. |. +++|.-.+|..-+. .||.+. ..+.||.|++.|..+-.++..
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH 234 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH 234 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence 567889999988752 21 14666666666554 355543 246799999998765444433
No 285
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=32.85 E-value=15 Score=35.44 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=32.3
Q ss_pred CCCcccccccccCCC-c--------eEcccCchhhHhhhhhcc-----------CCCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFK-P--------VVLNCGHVFCELCLFVPE-----------DGNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~-p--------v~l~CgH~fC~~Cl~~~~-----------~~~~~CP~Cr~~~~~~ 255 (458)
.....|++|.+.|.. | -.|+|-..+|..=+.+.| +..+.||.|++.+..+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 446778888876652 2 124676667766554322 1578899999888654
No 286
>PF06869 DUF1258: Protein of unknown function (DUF1258); InterPro: IPR009667 This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that this family contains a number of conserved cysteine and histidine residues.
Probab=32.62 E-value=46 Score=31.96 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=39.4
Q ss_pred CchhhHhhhhhccCCCCCCCCC--ccCCCCCCchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 043080 227 GHVFCELCLFVPEDGNFKCPNC--QSLQPYGLPSVCLIIEHFLEERFSDLYAERKEALLK 284 (458)
Q Consensus 227 gH~fC~~Cl~~~~~~~~~CP~C--r~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~ 284 (458)
-|.||..|-. .......|-.| ......-......+|..|++.|+++....|++....
T Consensus 17 ~h~~CN~CG~-~~~~~~kC~~c~~~~vakfvRig~~~QL~dLV~~y~~~Il~ir~~Lk~G 75 (258)
T PF06869_consen 17 THFICNSCGK-VVESNEKCSCCGCGPVAKFVRIGGFSQLQDLVEQYLEDILEIREKLKSG 75 (258)
T ss_pred eehhhhhhhh-hhccCceeeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3788999987 44455567555 433333234557889999999999999888776543
No 287
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.17 E-value=18 Score=35.97 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=32.4
Q ss_pred CCcccccccccCCCceEcc----cC--chhhHhhhhhccCCCCCCCCCccC
Q 043080 207 DDLSCAACKKMLFKPVVLN----CG--HVFCELCLFVPEDGNFKCPNCQSL 251 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~----Cg--H~fC~~Cl~~~~~~~~~CP~Cr~~ 251 (458)
..-.||||...-.-.++.. =| +.+|..|-..|--....||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999998765443322 23 456888999998888999999863
No 288
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=31.46 E-value=23 Score=25.24 Aligned_cols=29 Identities=34% Similarity=0.735 Sum_probs=20.4
Q ss_pred ccccccccCCCc----eEcccCchhhHhhhhhc
Q 043080 210 SCAACKKMLFKP----VVLNCGHVFCELCLFVP 238 (458)
Q Consensus 210 ~C~iC~~~~~~p----v~l~CgH~fC~~Cl~~~ 238 (458)
.|.+|...|.-- .-..||++||..|....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 588887765531 12389999999998754
No 289
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.45 E-value=41 Score=38.52 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCCCCcccccccccCCCceEcccCc-----hhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 204 VSVDDLSCAACKKMLFKPVVLNCGH-----VFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 204 ~~~~~l~C~iC~~~~~~pv~l~CgH-----~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
+......|+-|........--.||. .||..|-.. .....||.|......
T Consensus 622 VEVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 622 VEIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--VEEDECEKCGREPTP 675 (1121)
T ss_pred ecccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--CCCCcCCCCCCCCCc
Confidence 3445678999998864433336884 489999443 345679999987653
No 290
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=31.31 E-value=41 Score=33.50 Aligned_cols=46 Identities=30% Similarity=0.651 Sum_probs=36.1
Q ss_pred cccccccccCC--CceEc--ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 209 LSCAACKKMLF--KPVVL--NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 209 l~C~iC~~~~~--~pv~l--~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
-.||+|...+. +--.+ +||+..|..|+.....+...||.||+.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 46999998663 22233 788889999998888899999999987654
No 291
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=1.4e+02 Score=29.50 Aligned_cols=31 Identities=26% Similarity=0.697 Sum_probs=22.7
Q ss_pred CCCcccccccccCCCceEcccC--chhhHhhhh
Q 043080 206 VDDLSCAACKKMLFKPVVLNCG--HVFCELCLF 236 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~Cg--H~fC~~Cl~ 236 (458)
.....|-.|-..-..-.+++|. |+.|..|+.
T Consensus 219 ~~ni~C~~Ctdv~~~vlvf~Cns~HvtC~dCFr 251 (446)
T KOG0006|consen 219 SRNITCITCTDVRSPVLVFQCNSRHVTCLDCFR 251 (446)
T ss_pred cccceeEEecCCccceEEEecCCceeehHHhhh
Confidence 3456788887765544455888 999999886
No 292
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK04023 DNA polymerase II large subunit; Validated
Probab=30.15 E-value=39 Score=38.68 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=32.7
Q ss_pred CCCccccccccccCcEEccCCC-----hhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGH-----ISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH-----~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....|+-|.........-.||. .||..|-.. .+...||.|......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc----CCCCcCCCCCCCCCc
Confidence 4568999998875544456984 499999332 234569999988864
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.10 E-value=67 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=11.7
Q ss_pred ccccCcEEccCCC---hhhHHh
Q 043080 27 ELLYKPVVLACGH---ISCFWC 45 (458)
Q Consensus 27 ~~l~~Pv~~~CgH---~FC~~C 45 (458)
.++..||+..-.| -||+.-
T Consensus 794 ~lm~ePV~~Dkr~~H~~fck~A 815 (1516)
T KOG1832|consen 794 ILMAEPVTYDKRHEHLQFCKLA 815 (1516)
T ss_pred HHhhCcccccchhHHHHHHHHH
Confidence 4456777766554 377763
No 295
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.79 E-value=11 Score=26.27 Aligned_cols=40 Identities=28% Similarity=0.772 Sum_probs=25.0
Q ss_pred ccccccccCCC-ceEc--ccCchhhHhhhhhccC------CCCCCCCCc
Q 043080 210 SCAACKKMLFK-PVVL--NCGHVFCELCLFVPED------GNFKCPNCQ 249 (458)
Q Consensus 210 ~C~iC~~~~~~-pv~l--~CgH~fC~~Cl~~~~~------~~~~CP~Cr 249 (458)
.|.||...... .++. .|+..|+..|+..... ....||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 47888884433 3333 7788888888865432 356777764
No 296
>PF15616 TerY-C: TerY-C metal binding domain
Probab=29.44 E-value=27 Score=30.13 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=34.0
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+.|...-.||-|...+.-.+. .||.+||.. ......||-|.+...
T Consensus 71 tseL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~-------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFAVC-GCGKLFCID-------GEGEVTCPWCGNEGS 116 (131)
T ss_pred hHHhcCCCCCCCCcChhcEEEe-cCCCEEEeC-------CCCCEECCCCCCeee
Confidence 4566667899999998765544 899999952 234578999988753
No 297
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.12 E-value=33 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCC
Q 043080 54 HESNCPVCRNPYN 66 (458)
Q Consensus 54 ~~~~CP~Cr~~~~ 66 (458)
....||.|...+.
T Consensus 25 ~PivCP~CG~~~~ 37 (108)
T PF09538_consen 25 DPIVCPKCGTEFP 37 (108)
T ss_pred CCccCCCCCCccC
Confidence 3455888877765
No 299
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.00 E-value=25 Score=29.89 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=13.9
Q ss_pred cccccccCcEEccCCChhhHH
Q 043080 24 VCLELLYKPVVLACGHISCFW 44 (458)
Q Consensus 24 IC~~~l~~Pv~~~CgH~FC~~ 44 (458)
||+..-..-+...|||+||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 455544454448999999963
No 300
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.69 E-value=43 Score=35.34 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.9
Q ss_pred CCcccccccc
Q 043080 399 GSDATENRDG 408 (458)
Q Consensus 399 ~~~~~~~~~~ 408 (458)
++++++++.+
T Consensus 102 ~de~ee~~mg 111 (641)
T KOG0772|consen 102 EDEDEEDFMG 111 (641)
T ss_pred cccchhhhcC
Confidence 3444555554
No 301
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=27.59 E-value=33 Score=22.84 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=16.2
Q ss_pred cccccccccC-cEEcc-CCChhhHH
Q 043080 22 CCVCLELLYK-PVVLA-CGHISCFW 44 (458)
Q Consensus 22 C~IC~~~l~~-Pv~~~-CgH~FC~~ 44 (458)
|.+|.....- |+... |+.+||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5667766554 88866 89998863
No 302
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=27.57 E-value=43 Score=31.14 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=37.3
Q ss_pred CCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
--.|-+|..++..-+. -.||-.+...|+..++.. ...||.|..-.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhcccC
Confidence 3479999999988877 468888999999999884 667999965544
No 303
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.89 E-value=27 Score=33.48 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=36.1
Q ss_pred CcccccccccCCCceEc-ccCchhhHhhhhhccCC--CCCCCCCccC
Q 043080 208 DLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDG--NFKCPNCQSL 251 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~--~~~CP~Cr~~ 251 (458)
.++||+-...+.+|+.- .|||+|=..-+..+... ...||+=+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 57899999999999876 99999999888877664 7788876554
No 304
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=26.42 E-value=83 Score=29.80 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPV 60 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~ 60 (458)
-+.+|||-+....-|+. ..|.|.|=+.-|...++...+..||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 46789998888888877 78999999999999888555667884
No 305
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=26.35 E-value=57 Score=35.97 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=37.8
Q ss_pred cCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHh--cCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMN--SWHESNCPVCRNPYN 66 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~--~~~~~~CP~Cr~~~~ 66 (458)
.+.-.|.|+|+.--+.-|.. ..|.|.-|+.-+.-... +..+..||+|.+...
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 45668899999988887777 78999988876533221 234577999987764
No 306
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=26.32 E-value=56 Score=36.14 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=4.5
Q ss_pred cCchhhHhhh
Q 043080 226 CGHVFCELCL 235 (458)
Q Consensus 226 CgH~fC~~Cl 235 (458)
=.|.|-+.|-
T Consensus 650 IKhafFqpc~ 659 (960)
T KOG1189|consen 650 IKHAFFQPCE 659 (960)
T ss_pred hhhhhcCccc
Confidence 3444544443
No 307
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.61 E-value=61 Score=26.84 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=10.0
Q ss_pred CCCCCCCCCCccc-ccccCCCC
Q 043080 419 VPEDPENDTNDLE-DASSCFLP 439 (458)
Q Consensus 419 ~~~~~~~~~~~~~-~~~~~~~~ 439 (458)
+.+..++++.+++ +.+.+++.
T Consensus 86 lpDl~dDeDvd~~~ddDdtFLe 107 (129)
T COG4530 86 LPDLGDDEDVDLDDDDDDTFLE 107 (129)
T ss_pred ccccccccccccCCCCcccccc
Confidence 3333333334444 44556666
No 308
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=23.99 E-value=69 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.584 Sum_probs=21.8
Q ss_pred ceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcC
Q 043080 336 RYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQ 379 (458)
Q Consensus 336 ~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~ 379 (458)
-|+|.+|...-..-+|..|+... -|..|.+....
T Consensus 13 ~y~C~tC~~~~~~~iC~~Cf~~~----------~H~gH~~~~~~ 46 (71)
T smart00396 13 IYRCKTCGLDPTCVLCSDCFRSN----------CHKGHDYSLKT 46 (71)
T ss_pred EEECcCCCCCCCEeEChHHCCCC----------CCCCCCEEEEE
Confidence 47899996332345699998854 33677765543
No 309
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.62 E-value=50 Score=36.22 Aligned_cols=46 Identities=28% Similarity=0.551 Sum_probs=36.3
Q ss_pred ccccccccccCcEEccCCC-hhhHHhHHHHHhcCC----CCCCCCCCCCCC
Q 043080 21 KCCVCLELLYKPVVLACGH-ISCFWCVYNAMNSWH----ESNCPVCRNPYN 66 (458)
Q Consensus 21 ~C~IC~~~l~~Pv~~~CgH-~FC~~Ci~~~~~~~~----~~~CP~Cr~~~~ 66 (458)
.|+||-.-+.-+..-.||| ..|..|..+...... ...||+||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5899988887777889999 899999988755444 345799998664
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.52 E-value=33 Score=37.74 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=30.2
Q ss_pred CcccccccccCCCc--eEcccCchhhHhhhhhccCCCCCCCC
Q 043080 208 DLSCAACKKMLFKP--VVLNCGHVFCELCLFVPEDGNFKCPN 247 (458)
Q Consensus 208 ~l~C~iC~~~~~~p--v~l~CgH~fC~~Cl~~~~~~~~~CP~ 247 (458)
.+.|.+|.-..+.. +...|||+.+..|+..|++..-.||.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 45577776555543 33489999999999999998778884
No 311
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.43 E-value=38 Score=33.69 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=32.4
Q ss_pred CCcccccccccCCCceE-c--ccC--chhhHhhhhhccCCCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVV-L--NCG--HVFCELCLFVPEDGNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~-l--~Cg--H~fC~~Cl~~~~~~~~~CP~Cr~ 250 (458)
..-.||||...-.-.++ + .=| +.+|..|-..|--....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999987554433 2 233 34588899999888899999986
No 312
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=23.20 E-value=59 Score=35.39 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=4.4
Q ss_pred CcccCCC
Q 043080 451 DERSSDF 457 (458)
Q Consensus 451 ~~~~~~~ 457 (458)
++++|+|
T Consensus 552 edEdDgf 558 (811)
T KOG4364|consen 552 EDEDDGF 558 (811)
T ss_pred ccccCCe
Confidence 5666666
No 313
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.16 E-value=32 Score=29.48 Aligned_cols=38 Identities=34% Similarity=0.772 Sum_probs=22.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.++.+|.||.+.-+. -.||| .|..|-.+ .|..|...+.
T Consensus 63 ~ddatC~IC~KTKFA---DG~GH-~C~YCq~r------~CARCGGrv~ 100 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA---DGCGH-NCSYCQTR------FCARCGGRVS 100 (169)
T ss_pred CcCcchhhhhhcccc---cccCc-ccchhhhh------HHHhcCCeee
Confidence 356789999886332 16888 36666443 2555555443
No 314
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.79 E-value=67 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.750 Sum_probs=19.4
Q ss_pred CchhhHhhhhhccC---------CCCCCCCCccCC
Q 043080 227 GHVFCELCLFVPED---------GNFKCPNCQSLQ 252 (458)
Q Consensus 227 gH~fC~~Cl~~~~~---------~~~~CP~Cr~~~ 252 (458)
.-.||..||..... ....||.||...
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 66799999866543 567899998743
No 315
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.74 E-value=28 Score=35.48 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=3.5
Q ss_pred hhhccCCCCCcccccccccCCC-------------c-eEcccCchhhHhhhhhccC---CCCCCCCCccCCC
Q 043080 199 KAENWVSVDDLSCAACKKMLFK-------------P-VVLNCGHVFCELCLFVPED---GNFKCPNCQSLQP 253 (458)
Q Consensus 199 ~~~~~~~~~~l~C~iC~~~~~~-------------p-v~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~ 253 (458)
.....+......|||=+..|.- | |.|.|||++=..=.-.... ....||+|+..-+
T Consensus 268 ~~~~~lNa~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 268 ALRQELNAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp HHCHHSS-----------------------------------------------------------------
T ss_pred HHHHHHhhcCCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 3444556667789988776653 3 4468999875542211111 3678999988543
No 316
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.71 E-value=88 Score=34.84 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=5.7
Q ss_pred hHHHHHHHHHh
Q 043080 260 CLIIEHFLEER 270 (458)
Q Consensus 260 ~~~l~~l~~~~ 270 (458)
.+.|..++.+|
T Consensus 742 dfTL~~FLDrF 752 (988)
T KOG2038|consen 742 DFTLMAFLDRF 752 (988)
T ss_pred HHHHHHHHHHH
Confidence 34455555555
No 317
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.03 E-value=94 Score=34.62 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.8
Q ss_pred hhhHHHhcC
Q 043080 383 LSDLINRIN 391 (458)
Q Consensus 383 ~~~~~~~l~ 391 (458)
+.+.++..+
T Consensus 836 ~eeel~~~~ 844 (988)
T KOG2038|consen 836 FEEELWRFE 844 (988)
T ss_pred HHHHHHHhc
Confidence 333444443
No 318
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.69 E-value=46 Score=32.21 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.6
Q ss_pred CCcccccccccc---CcEEccCCChhh
Q 043080 19 EFKCCVCLELLY---KPVVLACGHISC 42 (458)
Q Consensus 19 ~~~C~IC~~~l~---~Pv~~~CgH~FC 42 (458)
.|.||+|...|. .....+.||+|=
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 378999999985 334466789883
No 319
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.50 E-value=45 Score=36.71 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=31.9
Q ss_pred CCCCcccccccccCCCce----------EcccCchh--------------------hHhhhhhccC--------CCCCCC
Q 043080 205 SVDDLSCAACKKMLFKPV----------VLNCGHVF--------------------CELCLFVPED--------GNFKCP 246 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv----------~l~CgH~f--------------------C~~Cl~~~~~--------~~~~CP 246 (458)
..+.-+|+-|++-+.+|- .+.||..| |..|...+.. ....||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 334556777777666551 12566665 8888877654 567899
Q ss_pred CCccCC
Q 043080 247 NCQSLQ 252 (458)
Q Consensus 247 ~Cr~~~ 252 (458)
.|+-.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 998755
No 320
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.93 E-value=46 Score=35.93 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=17.2
Q ss_pred ccCCChhhHHhHHHHHhcCCCCCCCCC
Q 043080 35 LACGHISCFWCVYNAMNSWHESNCPVC 61 (458)
Q Consensus 35 ~~CgH~FC~~Ci~~~~~~~~~~~CP~C 61 (458)
..||+.|+..|+.+ ....||.|
T Consensus 535 ~~C~avfH~~C~~r-----~s~~CPrC 556 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR-----KSPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHHhc-----cCCCCCch
Confidence 47999999999865 33349999
No 321
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=93 Score=29.90 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhcCCCCCcccccccc--------ccCcEE-ccCCChhhHHhHHHHHhcC------CCCCCCCCCCCCCCCCchhHHHHH
Q 043080 13 KEAFSDEFKCCVCLEL--------LYKPVV-LACGHISCFWCVYNAMNSW------HESNCPVCRNPYNHFPSICHLLHF 77 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~--------l~~Pv~-~~CgH~FC~~Ci~~~~~~~------~~~~CP~Cr~~~~~~~~~~~~l~~ 77 (458)
.+.-+.+-.|-||+.. +..|-. -.=.|=.+.+|+.+|..+. ....||.|+.++...-.....+..
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~~~ 93 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPFDR 93 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChHHH
Q ss_pred HHHHH
Q 043080 78 LLKKL 82 (458)
Q Consensus 78 ~l~~~ 82 (458)
.|+.+
T Consensus 94 ~Le~~ 98 (293)
T KOG3053|consen 94 VLERL 98 (293)
T ss_pred HHHHh
No 322
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=20.67 E-value=24 Score=27.84 Aligned_cols=39 Identities=28% Similarity=0.674 Sum_probs=28.6
Q ss_pred CCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.-.|.||...+..| |..||..|...- -.|.+|.+.+...
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~K------giCAMCGKki~nT 92 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYKK------GICAMCGKKILNT 92 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhhh------hHHHHhhhHhhcc
Confidence 35699999888877 767999997542 2488888776543
Done!