Query 043080
Match_columns 458
No_of_seqs 482 out of 3717
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:18:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap4_A E3 ubiquitin ligase RNF 99.7 3.2E-19 1.1E-23 153.7 1.7 49 207-255 71-126 (133)
2 3l11_A E3 ubiquitin-protein li 99.4 1.1E-13 3.6E-18 116.3 3.4 79 205-283 12-98 (115)
3 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.7E-18 106.7 3.7 67 205-271 5-72 (78)
4 3ztg_A E3 ubiquitin-protein li 99.4 3.4E-13 1.2E-17 108.4 5.4 55 12-66 6-61 (92)
5 2kr4_A Ubiquitin conjugation f 99.3 2.2E-13 7.6E-18 107.9 2.4 68 205-272 11-78 (85)
6 2ckl_A Polycomb group ring fin 99.3 1.3E-12 4.5E-17 108.3 7.1 78 12-91 8-91 (108)
7 4ayc_A E3 ubiquitin-protein li 99.3 5E-13 1.7E-17 115.9 4.6 53 14-68 48-100 (138)
8 3fl2_A E3 ubiquitin-protein li 99.3 1.7E-13 5.7E-18 116.7 1.3 70 206-275 50-121 (124)
9 1wgm_A Ubiquitin conjugation f 99.3 1.6E-12 5.6E-17 105.7 6.7 67 205-271 19-86 (98)
10 3l11_A E3 ubiquitin-protein li 99.3 2.4E-13 8.3E-18 114.1 1.7 82 13-95 9-98 (115)
11 3fl2_A E3 ubiquitin-protein li 99.3 2.9E-13 1E-17 115.2 2.1 73 13-86 46-120 (124)
12 3ztg_A E3 ubiquitin-protein li 99.3 9.2E-13 3.2E-17 105.9 4.9 67 205-271 10-80 (92)
13 2kre_A Ubiquitin conjugation f 99.3 1.1E-12 3.7E-17 107.1 5.2 67 205-271 26-92 (100)
14 2ckl_A Polycomb group ring fin 99.3 2.1E-12 7.2E-17 107.1 5.7 71 205-275 12-87 (108)
15 2yur_A Retinoblastoma-binding 99.3 1.1E-12 3.8E-17 101.1 3.6 56 12-67 8-64 (74)
16 1t1h_A Gspef-atpub14, armadill 99.3 1.7E-12 5.7E-17 101.0 4.3 53 14-67 3-55 (78)
17 2kr4_A Ubiquitin conjugation f 99.3 1.7E-12 5.9E-17 102.8 3.6 54 12-67 7-60 (85)
18 4ayc_A E3 ubiquitin-protein li 99.3 3.1E-12 1.1E-16 110.9 5.0 75 206-281 51-127 (138)
19 1z6u_A NP95-like ring finger p 99.3 8.2E-13 2.8E-17 116.1 1.3 70 206-275 76-147 (150)
20 1z6u_A NP95-like ring finger p 99.2 1.6E-12 5.6E-17 114.2 2.1 73 13-86 72-146 (150)
21 2egp_A Tripartite motif-contai 99.2 4.6E-13 1.6E-17 104.4 -1.6 61 205-265 9-76 (79)
22 2y43_A E3 ubiquitin-protein li 99.2 2.9E-12 9.8E-17 104.5 2.9 65 206-270 20-85 (99)
23 2djb_A Polycomb group ring fin 99.2 4.7E-12 1.6E-16 96.9 3.5 56 11-68 7-63 (72)
24 2ecy_A TNF receptor-associated 99.2 6.7E-12 2.3E-16 94.3 3.7 55 12-67 8-62 (66)
25 2ysl_A Tripartite motif-contai 99.2 1E-11 3.5E-16 95.1 4.4 56 12-67 13-69 (73)
26 1jm7_B BARD1, BRCA1-associated 99.2 1.2E-11 4E-16 104.1 5.0 63 206-270 20-83 (117)
27 2fc7_A ZZZ3 protein; structure 99.2 1.5E-11 5E-16 95.9 5.1 68 308-380 8-75 (82)
28 2csy_A Zinc finger protein 183 99.2 8.5E-12 2.9E-16 97.7 3.8 51 14-66 10-60 (81)
29 3lrq_A E3 ubiquitin-protein li 99.2 7.4E-12 2.5E-16 102.3 3.5 56 11-67 14-70 (100)
30 1wgm_A Ubiquitin conjugation f 99.2 1.9E-11 6.5E-16 99.4 5.2 55 11-67 14-69 (98)
31 3lrq_A E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 104.5 0.4 66 205-270 19-86 (100)
32 2kre_A Ubiquitin conjugation f 99.2 1.6E-11 5.4E-16 100.2 4.5 54 12-67 22-75 (100)
33 2ecw_A Tripartite motif-contai 99.2 1.4E-12 4.8E-17 102.9 -1.8 61 205-265 16-82 (85)
34 2ysj_A Tripartite motif-contai 99.2 1.7E-11 5.8E-16 91.1 4.2 50 12-61 13-63 (63)
35 2egp_A Tripartite motif-contai 99.1 6.1E-12 2.1E-16 97.9 1.3 56 12-67 5-65 (79)
36 2csy_A Zinc finger protein 183 99.1 7.9E-12 2.7E-16 97.9 1.6 58 205-263 12-69 (81)
37 2ecw_A Tripartite motif-contai 99.1 2.4E-11 8.1E-16 95.7 4.1 56 12-67 12-71 (85)
38 2ysl_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 92.2 4.7 52 205-256 17-71 (73)
39 2y43_A E3 ubiquitin-protein li 99.1 2.2E-11 7.6E-16 99.2 3.9 55 11-67 14-69 (99)
40 2yu4_A E3 SUMO-protein ligase 99.1 1.1E-11 3.9E-16 100.0 2.0 66 205-270 4-79 (94)
41 2ecv_A Tripartite motif-contai 99.1 1.9E-12 6.5E-17 102.1 -2.7 60 205-264 16-81 (85)
42 2e5r_A Dystrobrevin alpha; ZZ 99.1 7.3E-11 2.5E-15 87.3 4.9 57 315-380 6-62 (63)
43 2djb_A Polycomb group ring fin 99.1 2.6E-11 8.8E-16 92.8 2.5 53 205-257 12-65 (72)
44 2ecy_A TNF receptor-associated 99.1 3.7E-11 1.3E-15 90.2 3.2 51 205-255 12-63 (66)
45 2ecj_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 87.4 3.4 50 12-61 8-58 (58)
46 2d8t_A Dactylidin, ring finger 99.1 3.1E-11 1.1E-15 92.0 2.7 51 14-66 10-60 (71)
47 2ecv_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 94.1 3.3 56 12-67 12-71 (85)
48 1jm7_A BRCA1, breast cancer ty 99.1 2.2E-11 7.4E-16 101.4 1.4 65 207-271 20-87 (112)
49 2ct2_A Tripartite motif protei 99.1 6.3E-11 2.2E-15 94.1 4.1 56 12-67 8-68 (88)
50 2yur_A Retinoblastoma-binding 99.1 3.6E-11 1.2E-15 92.5 2.5 50 205-254 12-64 (74)
51 2d8t_A Dactylidin, ring finger 99.1 6.7E-11 2.3E-15 90.2 4.0 49 206-254 13-61 (71)
52 2ea6_A Ring finger protein 4; 99.1 3.8E-11 1.3E-15 90.7 2.4 53 13-67 9-68 (69)
53 2yu4_A E3 SUMO-protein ligase 99.1 9.9E-11 3.4E-15 94.4 4.5 52 15-66 3-62 (94)
54 2ckl_B Ubiquitin ligase protei 99.0 3.2E-11 1.1E-15 107.7 1.4 72 13-85 48-122 (165)
55 1jm7_B BARD1, BRCA1-associated 99.0 4.8E-11 1.7E-15 100.3 2.2 52 11-66 14-66 (117)
56 1g25_A CDK-activating kinase a 99.0 1.1E-10 3.9E-15 87.2 4.0 49 18-67 2-55 (65)
57 2ckl_B Ubiquitin ligase protei 99.0 4.1E-11 1.4E-15 107.0 1.6 70 205-274 51-123 (165)
58 3ng2_A RNF4, snurf, ring finge 99.0 8.8E-11 3E-15 89.3 2.7 52 14-67 5-63 (71)
59 2ysj_A Tripartite motif-contai 99.0 1.1E-10 3.7E-15 86.7 3.2 44 205-248 17-63 (63)
60 3hct_A TNF receptor-associated 99.0 4.7E-11 1.6E-15 100.5 1.2 66 205-270 15-81 (118)
61 2f42_A STIP1 homology and U-bo 99.0 1.1E-10 3.8E-15 104.7 3.4 67 205-271 103-170 (179)
62 3hct_A TNF receptor-associated 99.0 1.1E-10 3.6E-15 98.4 3.0 55 12-67 11-65 (118)
63 1jm7_A BRCA1, breast cancer ty 99.0 1.2E-10 4.3E-15 96.7 3.4 55 13-67 15-70 (112)
64 2c2l_A CHIP, carboxy terminus 99.0 8.5E-11 2.9E-15 113.5 2.3 66 206-271 206-272 (281)
65 1e4u_A Transcriptional repress 99.0 2E-10 6.7E-15 89.2 3.5 55 13-68 5-63 (78)
66 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.3E-15 87.0 2.2 52 207-258 2-59 (65)
67 1bor_A Transcription factor PM 99.0 1.3E-10 4.3E-15 84.3 2.1 47 206-255 4-50 (56)
68 1rmd_A RAG1; V(D)J recombinati 99.0 1.9E-10 6.5E-15 96.4 3.2 53 14-67 18-70 (116)
69 1bor_A Transcription factor PM 99.0 9.9E-11 3.4E-15 84.9 0.9 46 17-67 4-49 (56)
70 3knv_A TNF receptor-associated 99.0 8.8E-11 3E-15 102.0 0.7 53 13-66 25-77 (141)
71 2ct2_A Tripartite motif protei 99.0 2E-10 6.8E-15 91.1 2.5 51 205-255 12-69 (88)
72 2kiz_A E3 ubiquitin-protein li 99.0 4.9E-10 1.7E-14 84.7 4.5 52 14-67 9-63 (69)
73 2f42_A STIP1 homology and U-bo 98.9 4.1E-10 1.4E-14 101.0 4.4 53 14-67 101-153 (179)
74 2xeu_A Ring finger protein 4; 98.9 2.3E-10 7.7E-15 85.0 2.3 48 18-67 2-56 (64)
75 3ng2_A RNF4, snurf, ring finge 98.9 1.2E-10 4E-15 88.6 0.6 53 205-257 7-66 (71)
76 1iym_A EL5; ring-H2 finger, ub 98.9 4.1E-10 1.4E-14 81.1 3.3 49 16-66 2-54 (55)
77 2ea6_A Ring finger protein 4; 98.9 1.5E-10 5E-15 87.4 0.9 50 205-254 12-68 (69)
78 2ect_A Ring finger protein 126 98.9 4E-10 1.4E-14 87.4 3.4 53 13-67 9-64 (78)
79 2ecj_A Tripartite motif-contai 98.9 4.6E-10 1.6E-14 81.7 3.4 44 205-248 12-58 (58)
80 2c2l_A CHIP, carboxy terminus 98.9 4.3E-10 1.5E-14 108.5 4.1 52 15-67 204-255 (281)
81 2ecm_A Ring finger and CHY zin 98.9 5.4E-10 1.9E-14 80.4 3.3 47 18-66 4-54 (55)
82 3htk_C E3 SUMO-protein ligase 98.9 5.1E-10 1.8E-14 105.2 3.7 57 10-66 172-231 (267)
83 2ecn_A Ring finger protein 141 98.9 1.5E-10 5.3E-15 87.8 -0.1 53 12-67 8-60 (70)
84 1iym_A EL5; ring-H2 finger, ub 98.9 9.2E-10 3.1E-14 79.2 4.0 48 206-253 3-54 (55)
85 3knv_A TNF receptor-associated 98.9 3.8E-10 1.3E-14 97.9 2.3 50 204-253 27-77 (141)
86 2ep4_A Ring finger protein 24; 98.9 5E-10 1.7E-14 85.9 2.6 54 13-68 9-65 (74)
87 1chc_A Equine herpes virus-1 r 98.9 5.3E-10 1.8E-14 84.2 2.6 48 17-66 3-51 (68)
88 4ic3_A E3 ubiquitin-protein li 98.9 2E-10 6.8E-15 88.3 0.2 52 10-67 15-67 (74)
89 2ect_A Ring finger protein 126 98.9 7.4E-10 2.5E-14 85.8 3.4 51 206-256 13-66 (78)
90 2dip_A Zinc finger SWIM domain 98.9 8.4E-10 2.9E-14 88.8 3.7 54 315-381 25-78 (98)
91 2xeu_A Ring finger protein 4; 98.9 2.4E-10 8.1E-15 84.9 0.2 51 207-257 2-59 (64)
92 1rmd_A RAG1; V(D)J recombinati 98.9 3.7E-10 1.3E-14 94.6 1.2 63 207-269 22-86 (116)
93 3htk_C E3 SUMO-protein ligase 98.9 9.5E-10 3.3E-14 103.4 3.9 66 205-270 178-248 (267)
94 1chc_A Equine herpes virus-1 r 98.9 6.4E-10 2.2E-14 83.8 2.2 49 206-254 3-52 (68)
95 2ecm_A Ring finger and CHY zin 98.9 6.8E-10 2.3E-14 79.9 2.0 47 207-253 4-54 (55)
96 2l0b_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 87.5 3.6 50 15-66 36-88 (91)
97 2ecn_A Ring finger protein 141 98.8 8.2E-10 2.8E-14 83.7 2.1 49 206-255 13-61 (70)
98 1x4j_A Ring finger protein 38; 98.8 9.2E-10 3.2E-14 84.7 2.2 51 15-67 19-72 (75)
99 1e4u_A Transcriptional repress 98.8 1.8E-09 6.1E-14 83.7 3.6 52 205-256 8-64 (78)
100 3hcs_A TNF receptor-associated 98.8 1.4E-09 4.7E-14 97.5 3.0 55 12-67 11-65 (170)
101 3hcs_A TNF receptor-associated 98.8 7.3E-10 2.5E-14 99.3 1.2 65 205-269 15-80 (170)
102 2l0b_A E3 ubiquitin-protein li 98.8 1.8E-09 6.2E-14 86.4 3.3 49 206-254 38-89 (91)
103 1v87_A Deltex protein 2; ring- 98.8 2.5E-09 8.7E-14 89.1 4.2 50 18-67 24-94 (114)
104 2ecg_A Baculoviral IAP repeat- 98.8 7.9E-10 2.7E-14 85.2 0.8 53 10-68 16-69 (75)
105 2kiz_A E3 ubiquitin-protein li 98.8 1.9E-09 6.6E-14 81.4 2.8 50 206-255 12-64 (69)
106 1x4j_A Ring finger protein 38; 98.8 1.8E-09 6.1E-14 83.0 1.6 49 206-254 21-72 (75)
107 4ap4_A E3 ubiquitin ligase RNF 98.7 1.9E-09 6.6E-14 92.0 1.8 52 205-256 4-62 (133)
108 4ic3_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 81.2 2.2 45 206-254 22-67 (74)
109 2ep4_A Ring finger protein 24; 98.7 3.8E-09 1.3E-13 80.9 1.4 49 206-254 13-64 (74)
110 1v87_A Deltex protein 2; ring- 98.6 1.1E-08 3.7E-13 85.2 3.3 48 207-254 24-94 (114)
111 2ecg_A Baculoviral IAP repeat- 98.6 6.9E-09 2.3E-13 79.8 1.4 46 206-255 23-69 (75)
112 2ecl_A Ring-box protein 2; RNF 98.6 1.6E-08 5.6E-13 78.9 3.6 47 18-66 14-75 (81)
113 2yho_A E3 ubiquitin-protein li 98.6 3.6E-09 1.2E-13 82.3 -0.3 52 10-67 9-61 (79)
114 2ecl_A Ring-box protein 2; RNF 98.6 3.2E-08 1.1E-12 77.2 3.9 48 207-254 14-76 (81)
115 2y1n_A E3 ubiquitin-protein li 98.5 3.8E-08 1.3E-12 98.2 4.3 53 14-67 327-379 (389)
116 2vje_A E3 ubiquitin-protein li 98.5 3E-08 1E-12 73.8 2.5 48 18-67 7-57 (64)
117 2vje_A E3 ubiquitin-protein li 98.5 2.9E-08 1E-12 73.8 2.1 47 207-253 7-56 (64)
118 3dpl_R Ring-box protein 1; ubi 98.5 6.9E-08 2.4E-12 79.2 4.0 47 18-66 36-100 (106)
119 2vje_B MDM4 protein; proto-onc 98.5 4.1E-08 1.4E-12 72.8 2.3 47 19-67 7-56 (63)
120 2vje_B MDM4 protein; proto-onc 98.4 4.8E-08 1.6E-12 72.4 1.7 48 207-254 6-56 (63)
121 2yho_A E3 ubiquitin-protein li 98.4 6.2E-08 2.1E-12 75.2 2.3 44 207-254 17-61 (79)
122 2bay_A PRE-mRNA splicing facto 98.4 8.2E-08 2.8E-12 70.6 2.4 47 19-67 3-50 (61)
123 1wim_A KIAA0161 protein; ring 98.4 2E-07 6.9E-12 74.8 4.8 47 18-64 4-61 (94)
124 1tot_A CREB-binding protein; z 98.4 5.4E-08 1.8E-12 68.8 1.1 46 319-380 4-49 (52)
125 2ea5_A Cell growth regulator w 98.4 8.4E-08 2.9E-12 72.2 2.1 44 18-67 14-58 (68)
126 2y1n_A E3 ubiquitin-protein li 98.4 9.6E-08 3.3E-12 95.3 2.8 50 205-254 329-379 (389)
127 3t6p_A Baculoviral IAP repeat- 98.4 4.8E-08 1.6E-12 96.8 0.6 51 11-67 287-338 (345)
128 2ea5_A Cell growth regulator w 98.4 2E-07 6.8E-12 70.1 3.9 45 206-254 13-58 (68)
129 3dpl_R Ring-box protein 1; ubi 98.4 1.8E-07 6E-12 76.8 3.5 48 206-253 35-100 (106)
130 1wim_A KIAA0161 protein; ring 98.3 1E-07 3.6E-12 76.5 -0.1 45 207-251 4-61 (94)
131 2bay_A PRE-mRNA splicing facto 98.2 1.1E-07 3.8E-12 69.9 -0.4 50 208-257 3-53 (61)
132 2d8s_A Cellular modulator of i 98.2 6.1E-07 2.1E-11 69.7 3.5 51 17-67 13-70 (80)
133 3t6p_A Baculoviral IAP repeat- 98.2 5E-07 1.7E-11 89.5 2.5 46 205-254 292-338 (345)
134 4a0k_B E3 ubiquitin-protein li 98.2 2.7E-07 9.3E-12 76.9 0.2 46 19-66 48-111 (117)
135 4a0k_B E3 ubiquitin-protein li 98.1 2.3E-07 7.8E-12 77.3 -1.3 48 206-253 46-111 (117)
136 2ct0_A Non-SMC element 1 homol 98.0 6.6E-06 2.3E-10 62.6 4.6 50 17-66 13-63 (74)
137 2d8s_A Cellular modulator of i 97.9 5.6E-06 1.9E-10 64.2 3.0 50 205-254 12-70 (80)
138 2ct0_A Non-SMC element 1 homol 97.6 5.3E-05 1.8E-09 57.6 4.6 48 207-254 14-64 (74)
139 1vyx_A ORF K3, K3RING; zinc-bi 97.6 3.2E-05 1.1E-09 56.4 3.2 49 18-66 5-58 (60)
140 3vk6_A E3 ubiquitin-protein li 97.4 7.3E-05 2.5E-09 59.3 3.3 46 21-67 3-49 (101)
141 2jun_A Midline-1; B-BOX, TRIM, 97.1 0.00087 3E-08 53.9 6.5 31 207-237 2-35 (101)
142 3vk6_A E3 ubiquitin-protein li 97.1 0.0002 7E-09 56.7 2.5 45 210-254 3-49 (101)
143 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.0004 1.4E-08 50.5 2.2 48 207-254 5-59 (60)
144 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.00038 1.3E-08 67.6 -0.2 50 17-66 306-372 (381)
145 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.0011 3.6E-08 64.6 -1.1 49 206-254 306-373 (381)
146 3nw0_A Non-structural maintena 95.6 0.008 2.7E-07 56.2 4.3 50 18-67 179-229 (238)
147 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.0064 2.2E-07 48.7 1.7 32 18-49 2-36 (101)
148 3m62_A Ubiquitin conjugation f 95.1 0.0085 2.9E-07 65.9 3.0 68 205-272 888-956 (968)
149 3nw0_A Non-structural maintena 93.9 0.036 1.2E-06 51.7 3.8 51 207-257 179-232 (238)
150 3m62_A Ubiquitin conjugation f 93.2 0.044 1.5E-06 60.3 3.5 54 12-67 884-938 (968)
151 2ko5_A Ring finger protein Z; 92.4 0.057 1.9E-06 42.0 2.1 47 207-255 27-74 (99)
152 3i2d_A E3 SUMO-protein ligase 87.6 0.4 1.4E-05 47.2 4.1 52 15-66 245-299 (371)
153 2cs3_A Protein C14ORF4, MY039 86.5 0.17 6E-06 38.0 0.6 37 17-53 13-53 (93)
154 4fo9_A E3 SUMO-protein ligase 85.3 0.73 2.5E-05 45.2 4.5 51 16-66 212-265 (360)
155 2ffw_A Midline-1; B-BOX, ring 83.2 0.69 2.4E-05 35.0 2.7 36 321-360 30-66 (78)
156 3i2d_A E3 SUMO-protein ligase 83.1 0.43 1.5E-05 46.9 1.9 63 208-270 249-316 (371)
157 4fo9_A E3 SUMO-protein ligase 80.9 0.68 2.3E-05 45.4 2.4 63 207-269 214-281 (360)
158 2ko5_A Ring finger protein Z; 74.4 1.2 4.2E-05 34.5 1.6 48 17-68 26-74 (99)
159 1weo_A Cellulose synthase, cat 72.9 4 0.00014 31.3 4.1 48 18-66 15-69 (93)
160 2cs3_A Protein C14ORF4, MY039 63.4 2.8 9.7E-05 31.5 1.5 34 207-240 14-51 (93)
161 3mjh_B Early endosome antigen 59.6 1.2 4E-05 28.0 -1.0 16 207-222 4-19 (34)
162 2d8u_A Ubiquitin ligase TRIM63 59.3 8.5 0.00029 27.2 3.5 40 327-380 11-50 (64)
163 2lri_C Autoimmune regulator; Z 56.3 13 0.00045 26.8 4.1 42 208-251 12-59 (66)
164 2lbm_A Transcriptional regulat 55.4 13 0.00045 31.3 4.5 46 18-63 62-116 (142)
165 1f62_A Transcription factor WS 53.5 9.5 0.00033 25.7 2.8 41 210-250 2-49 (51)
166 1z60_A TFIIH basal transcripti 51.1 11 0.00036 26.8 2.7 39 210-248 17-58 (59)
167 2yvr_A Transcription intermedi 50.1 13 0.00045 24.8 3.1 38 327-379 9-46 (50)
168 2k16_A Transcription initiatio 49.8 7.5 0.00026 28.7 1.9 47 207-253 17-70 (75)
169 2l5u_A Chromodomain-helicase-D 49.6 14 0.00048 26.1 3.3 42 207-250 10-57 (61)
170 1weo_A Cellulose synthase, cat 48.5 8.9 0.0003 29.4 2.1 46 208-253 16-69 (93)
171 2gmg_A Hypothetical protein PF 48.2 7.7 0.00026 30.8 1.8 33 30-69 66-98 (105)
172 2did_A Tripartite motif protei 48.2 19 0.00066 24.2 3.8 33 334-380 17-49 (53)
173 1m3v_A FLIN4, fusion of the LI 46.0 10 0.00035 30.7 2.3 48 207-254 31-81 (122)
174 1v5n_A PDI-like hypothetical p 45.9 14 0.00049 28.3 3.0 32 322-358 48-79 (89)
175 2dja_A Midline-2; tripartite m 45.7 20 0.0007 26.7 3.9 41 326-380 20-60 (84)
176 1mm2_A MI2-beta; PHD, zinc fin 45.7 12 0.00041 26.5 2.4 44 207-252 8-57 (61)
177 2lri_C Autoimmune regulator; Z 42.4 17 0.00057 26.3 2.7 49 17-66 10-61 (66)
178 1z2q_A LM5-1; membrane protein 39.4 32 0.0011 25.9 4.1 33 322-358 22-55 (84)
179 1y02_A CARP2, FYVE-ring finger 39.0 3 0.0001 34.2 -2.0 43 208-250 19-65 (120)
180 2gmg_A Hypothetical protein PF 38.8 12 0.0004 29.8 1.5 28 220-252 67-94 (105)
181 1joc_A EEA1, early endosomal a 38.4 8.8 0.0003 31.6 0.8 31 208-238 69-103 (125)
182 2ct7_A Ring finger protein 31; 37.0 6.2 0.00021 30.1 -0.4 29 21-49 27-61 (86)
183 2lv9_A Histone-lysine N-methyl 36.8 16 0.00056 28.5 2.1 43 207-250 27-75 (98)
184 1x4s_A Protein FON, zinc finge 36.6 12 0.0004 26.5 1.0 35 322-360 12-47 (59)
185 1fre_A Nuclear factor XNF7; zi 35.3 28 0.00097 22.0 2.8 21 334-358 12-32 (42)
186 2yql_A PHD finger protein 21A; 34.6 8 0.00027 26.8 -0.1 41 207-249 8-54 (56)
187 3ddt_A E3 ubiquitin-protein li 34.5 28 0.00095 22.9 2.7 19 335-357 17-35 (48)
188 2yt5_A Metal-response element- 34.3 12 0.0004 26.8 0.8 46 207-252 5-62 (66)
189 1wil_A KIAA1045 protein; ring 34.0 26 0.0009 26.6 2.7 43 207-250 14-75 (89)
190 1wd2_A Ariadne-1 protein homol 33.5 11 0.00037 26.8 0.5 34 207-240 5-46 (60)
191 2lbm_A Transcriptional regulat 33.3 23 0.00077 29.8 2.5 42 207-250 62-116 (142)
192 1vfy_A Phosphatidylinositol-3- 33.0 28 0.00095 25.4 2.7 32 322-357 12-44 (73)
193 3ny3_A E3 ubiquitin-protein li 32.9 18 0.00063 26.8 1.7 25 334-358 15-39 (75)
194 2xjy_A Rhombotin-2; oncoprotei 32.8 17 0.00059 29.5 1.7 50 205-254 26-78 (131)
195 2ku3_A Bromodomain-containing 32.4 21 0.0007 26.2 1.9 46 205-250 13-65 (71)
196 1wen_A Inhibitor of growth fam 32.2 41 0.0014 24.5 3.5 46 207-253 15-67 (71)
197 2fiy_A Protein FDHE homolog; F 31.7 11 0.00039 36.0 0.5 46 206-251 180-231 (309)
198 1m3v_A FLIN4, fusion of the LI 31.4 22 0.00076 28.6 2.1 47 19-67 32-81 (122)
199 3o36_A Transcription intermedi 31.4 22 0.00075 31.0 2.2 43 208-252 4-52 (184)
200 1we9_A PHD finger family prote 30.8 19 0.00067 25.4 1.5 46 206-251 4-58 (64)
201 2l43_A N-teminal domain from h 30.8 16 0.00055 28.0 1.1 49 206-254 23-78 (88)
202 2d8v_A Zinc finger FYVE domain 30.6 20 0.0007 25.8 1.5 31 322-359 9-39 (67)
203 2xqn_T Testin, TESS; metal-bin 30.4 24 0.00081 28.4 2.2 45 18-66 29-74 (126)
204 2yrg_A Tripartite motif-contai 30.3 32 0.0011 23.9 2.6 33 334-380 23-55 (59)
205 2jne_A Hypothetical protein YF 29.9 5.7 0.00019 31.0 -1.6 40 209-253 33-72 (101)
206 2puy_A PHD finger protein 21A; 29.9 15 0.00052 25.7 0.7 42 207-250 4-51 (60)
207 2jrp_A Putative cytoplasmic pr 29.7 5.2 0.00018 30.3 -1.8 40 209-253 3-42 (81)
208 2xqn_T Testin, TESS; metal-bin 29.2 32 0.0011 27.6 2.8 47 206-254 28-75 (126)
209 2o35_A Hypothetical protein DU 29.0 18 0.00062 28.3 1.1 13 40-52 42-54 (105)
210 3fyb_A Protein of unknown func 28.9 18 0.00063 28.2 1.1 13 40-52 41-53 (104)
211 2k2d_A Ring finger and CHY zin 28.8 2.5 8.5E-05 32.0 -3.8 9 322-330 38-46 (79)
212 3zyq_A Hepatocyte growth facto 28.3 36 0.0012 30.9 3.2 39 315-357 158-197 (226)
213 1fp0_A KAP-1 corepressor; PHD 27.6 46 0.0016 25.5 3.1 44 206-251 23-72 (88)
214 3ql9_A Transcriptional regulat 27.5 34 0.0012 28.3 2.6 46 18-63 56-110 (129)
215 1dvp_A HRS, hepatocyte growth 27.3 41 0.0014 30.2 3.4 39 315-357 155-194 (220)
216 1xwh_A Autoimmune regulator; P 27.3 19 0.00065 25.8 0.9 44 207-252 7-56 (66)
217 1wev_A Riken cDNA 1110020M19; 27.0 15 0.00051 28.1 0.3 45 207-251 15-72 (88)
218 2ayu_A Nucleosome assembly pro 26.9 14 0.00048 36.9 0.2 12 379-390 308-319 (417)
219 3nis_A E3 ubiquitin-protein li 26.6 26 0.00089 26.5 1.6 35 334-378 19-53 (82)
220 1x4u_A Zinc finger, FYVE domai 26.2 53 0.0018 24.6 3.3 32 322-357 15-47 (84)
221 3asl_A E3 ubiquitin-protein li 25.7 32 0.0011 25.0 1.9 41 210-250 20-68 (70)
222 1joc_A EEA1, early endosomal a 25.6 41 0.0014 27.4 2.8 33 322-358 70-103 (125)
223 2yqq_A Zinc finger HIT domain- 25.6 23 0.00078 24.8 1.0 29 322-358 13-42 (56)
224 1rut_X Flinc4, fusion protein 25.2 14 0.00048 32.4 -0.2 50 205-254 29-81 (188)
225 1wfk_A Zinc finger, FYVE domai 25.1 57 0.0019 24.8 3.3 32 322-357 10-42 (88)
226 1dvp_A HRS, hepatocyte growth 23.8 21 0.00071 32.2 0.7 30 208-237 161-194 (220)
227 2e6s_A E3 ubiquitin-protein li 23.7 31 0.0011 25.6 1.5 41 210-250 28-76 (77)
228 2csv_A Tripartite motif protei 23.5 40 0.0014 24.3 2.1 31 334-379 27-57 (72)
229 2ysm_A Myeloid/lymphoid or mix 23.1 48 0.0017 26.1 2.7 43 207-249 6-55 (111)
230 3u5n_A E3 ubiquitin-protein li 23.1 33 0.0011 30.5 1.9 43 208-252 7-55 (207)
231 2jmo_A Parkin; IBR, E3 ligase, 23.0 18 0.00062 27.1 0.1 20 225-246 55-74 (80)
232 2cup_A Skeletal muscle LIM-pro 22.9 50 0.0017 25.2 2.7 47 206-254 31-78 (101)
233 2rgt_A Fusion of LIM/homeobox 22.7 55 0.0019 27.8 3.2 45 18-66 32-76 (169)
234 1wff_A Riken cDNA 2810002D23 p 22.2 32 0.0011 26.2 1.3 27 18-44 24-52 (85)
235 3t7l_A Zinc finger FYVE domain 22.1 63 0.0021 24.6 3.0 33 322-358 21-54 (90)
236 3a1b_A DNA (cytosine-5)-methyl 22.0 53 0.0018 28.1 2.8 43 207-251 78-134 (159)
237 3mpx_A FYVE, rhogef and PH dom 21.8 19 0.00066 35.8 0.0 31 208-238 375-409 (434)
238 2yw8_A RUN and FYVE domain-con 21.8 48 0.0016 24.8 2.3 33 322-358 20-53 (82)
239 3zyq_A Hepatocyte growth facto 21.2 28 0.00096 31.6 1.0 30 208-237 164-197 (226)
240 2xjy_A Rhombotin-2; oncoprotei 20.9 38 0.0013 27.3 1.7 47 18-66 28-77 (131)
241 3shb_A E3 ubiquitin-protein li 20.4 35 0.0012 25.4 1.2 41 210-250 28-76 (77)
242 3v43_A Histone acetyltransfera 20.4 47 0.0016 26.4 2.1 41 210-250 63-111 (112)
243 2dar_A PDZ and LIM domain prot 20.1 51 0.0018 24.7 2.2 36 210-253 27-62 (90)
244 1y02_A CARP2, FYVE-ring finger 20.0 51 0.0017 26.8 2.2 33 322-358 20-53 (120)
No 1
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.73 E-value=3.2e-19 Score=153.69 Aligned_cols=49 Identities=31% Similarity=0.638 Sum_probs=43.5
Q ss_pred CCcccccccccCCCc-------eEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 207 DDLSCAACKKMLFKP-------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 207 ~~l~C~iC~~~~~~p-------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
+.+.|+||++.|..| +.++|||+||..|+.+|+.....||+||..+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 345699999999887 8889999999999999999889999999988654
No 2
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=116.32 Aligned_cols=79 Identities=20% Similarity=0.481 Sum_probs=67.4
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCC-------CCchhhHHHHHHHHHhhhhHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPY-------GLPSVCLIIEHFLEERFSDLYA 276 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~-------~~~~~~~~l~~l~~~~~~~~~~ 276 (458)
..+++.|+||++++.+|++++|||+||..|+..|+.. ...||+||..+.. ..+.+|..|.+++..+++.+.+
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~ 91 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECK 91 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHH
Confidence 4567899999999999999999999999999999875 7899999998753 4567899999999999999888
Q ss_pred HHHHHHH
Q 043080 277 ERKEALL 283 (458)
Q Consensus 277 ~r~~~~~ 283 (458)
.|+...+
T Consensus 92 ~r~~~~e 98 (115)
T 3l11_A 92 LRASGQE 98 (115)
T ss_dssp HHHHC--
T ss_pred HHHhhhh
Confidence 7765433
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=1.7e-13 Score=106.75 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
..+.+.|+||+++|.+|++++|||+||..||..|+.. ...||+||..+....+..|..|.++++.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999985 789999999998878888999999998874
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=108.44 Aligned_cols=55 Identities=27% Similarity=0.706 Sum_probs=49.7
Q ss_pred hhhcCCCCCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.+.+.+.+.|+||+++|.+||+++ |||+||+.||..|+...+...||+||..+.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567889999999999999999999 999999999999998766678999999974
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.34 E-value=2.2e-13 Score=107.93 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFS 272 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~~ 272 (458)
..+++.||||+++|.+||+++|||+||+.||..|+.....||+|+..+....+..|..|.++++.+..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999877899999999988888999999999999854
No 6
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.34 E-value=1.3e-12 Score=108.31 Aligned_cols=78 Identities=17% Similarity=0.404 Sum_probs=62.5
Q ss_pred hhhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCC-----chhHHHHHHHHHHchH
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFP-----SICHLLHFLLKKLYPL 85 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~-----~~~~~l~~~l~~~~~~ 85 (458)
.++.+.+.+.|+||++++.+|+++ +|||+||..||..|+.. ...||+||..+.... .....+..++..+++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 356778899999999999999997 99999999999999984 368999999987532 2234577888888886
Q ss_pred HHHHHH
Q 043080 86 TYEKRE 91 (458)
Q Consensus 86 ~~~~r~ 91 (458)
......
T Consensus 86 ~~~~e~ 91 (108)
T 2ckl_A 86 LFKNEM 91 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=5e-13 Score=115.94 Aligned_cols=53 Identities=28% Similarity=0.808 Sum_probs=46.3
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
+.+.+++.|+||++.|.+||+++|||+||..||..|+. ....||+||..+...
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSK 100 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCCE
T ss_pred HhccccCCCcccCcccCCceECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCCC
Confidence 34556789999999999999999999999999999987 456799999998653
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=1.7e-13 Score=116.68 Aligned_cols=70 Identities=23% Similarity=0.502 Sum_probs=62.3
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCCccCCCC-CCchhhHHHHHHHHHhhhhHH
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPY-GLPSVCLIIEHFLEERFSDLY 275 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~-~~~~~~~~l~~l~~~~~~~~~ 275 (458)
.+.+.|+||+++|.+|++++|||+||..||..|+. ....||+||..+.. ..+.+|..|.++++.++|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 35689999999999999999999999999999986 45699999999976 678899999999999987643
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.33 E-value=1.6e-12 Score=105.67 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=62.3
Q ss_pred CCCCcccccccccCCCceEcccC-chhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCG-HVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~Cg-H~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
..+++.||||+++|.+||+++|| |+||+.||..|+.....||+||..+....+..|..|+++++.+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 35689999999999999999999 99999999999988889999999998888999999999999883
No 10
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=2.4e-13 Score=114.07 Aligned_cols=82 Identities=26% Similarity=0.517 Sum_probs=64.0
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC--------CCchhHHHHHHHHHHch
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH--------FPSICHLLHFLLKKLYP 84 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~--------~~~~~~~l~~~l~~~~~ 84 (458)
...+.+.+.|+||++++.+|++++|||+||..||..|+.. +...||+||..+.. ...+...+..+++.++|
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred ccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3455668899999999999999999999999999998864 35689999998852 22345567888999999
Q ss_pred HHHHHHHHHHH
Q 043080 85 LTYEKRERQVA 95 (458)
Q Consensus 85 ~~~~~r~~~~~ 95 (458)
...+.|..+.+
T Consensus 88 ~~~~~r~~~~e 98 (115)
T 3l11_A 88 RECKLRASGQE 98 (115)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 87776654443
No 11
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=2.9e-13 Score=115.16 Aligned_cols=73 Identities=25% Similarity=0.620 Sum_probs=59.0
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC--CCchhHHHHHHHHHHchHH
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH--FPSICHLLHFLLKKLYPLT 86 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~--~~~~~~~l~~~l~~~~~~~ 86 (458)
+..+.+.+.|+||+++|.+||+++|||+||+.||..|+.. +...||+||..+.. .......+..++..++|..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 4556778999999999999999999999999999999983 45589999999965 2233445777888887753
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=9.2e-13 Score=105.89 Aligned_cols=67 Identities=21% Similarity=0.510 Sum_probs=59.2
Q ss_pred CCCCcccccccccCCCceEcc-cCchhhHhhhhhccC--CCCCCCCCccCC-CCCCchhhHHHHHHHHHhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLN-CGHVFCELCLFVPED--GNFKCPNCQSLQ-PYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~-CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~-~~~~~~~~~~l~~l~~~~~ 271 (458)
..+.+.|+||+++|.+|++++ |||+||..||..|+. ....||+||..+ ....+..|..|.++++.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 457899999999999999999 999999999999975 457999999997 5567888999999999883
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.32 E-value=1.1e-12 Score=107.12 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=62.6
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
..+++.||||+++|.+||+++|||+||+.||..|+.....||+|+.++....+..|..|.++++.+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998899999999998888999999999999884
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=2.1e-12 Score=107.07 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=62.9
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCC----CchhhHHHHHHHHHhhhhHH
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYG----LPSVCLIIEHFLEERFSDLY 275 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~l~~~~~~~~~ 275 (458)
..+.+.|+||++.+.+|+++ +|||+||..|+..|+.....||+||..+... .+..|..+.++++.+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 87 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLF 87 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHH
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHH
Confidence 34678999999999999998 9999999999999999889999999998764 56779999999999987544
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=101.08 Aligned_cols=56 Identities=27% Similarity=0.692 Sum_probs=49.7
Q ss_pred hhhcCCCCCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+.+.+.+.+.|+||+++|.+||+++ |||+||+.||..|+...+...||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4577888999999999999999999 9999999999999987556789999998643
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.28 E-value=1.7e-12 Score=101.02 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=47.2
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.|+||+++|.+||+++|||+||+.||..|+.. +...||+||..+..
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 356789999999999999999999999999999999974 46789999999864
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.27 E-value=1.7e-12 Score=102.79 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=48.4
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+..+.+.+.||||+++|.+||+++|||+||+.||..|+.. ...||+||..+..
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 45677889999999999999999999999999999999984 4689999998864
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=3.1e-12 Score=110.86 Aligned_cols=75 Identities=24% Similarity=0.509 Sum_probs=56.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC--CchhhHHHHHHHHHhhhhHHHHHHHH
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG--LPSVCLIIEHFLEERFSDLYAERKEA 281 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~ 281 (458)
.+++.|+||++.|.+|++++|||+||..|+..|+.....||+||..+... .+.++..+..++.. ++..+..|+..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~-l~~~~~~rr~~ 127 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNN-LSSEVKERRIV 127 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHHH-hhHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988653 23334444444443 34445444443
No 19
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.26 E-value=8.2e-13 Score=116.12 Aligned_cols=70 Identities=23% Similarity=0.535 Sum_probs=62.0
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCC-CchhhHHHHHHHHHhhhhHH
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYG-LPSVCLIIEHFLEERFSDLY 275 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~-~~~~~~~l~~l~~~~~~~~~ 275 (458)
.+.+.|+||+++|.+|++++|||+||..||..|+.. ...||+||..+... .+.+|..|.++++.+++...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 356889999999999999999999999999999874 45899999999876 78899999999999987543
No 20
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.23 E-value=1.6e-12 Score=114.20 Aligned_cols=73 Identities=27% Similarity=0.592 Sum_probs=58.6
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC--CchhHHHHHHHHHHchHH
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF--PSICHLLHFLLKKLYPLT 86 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~--~~~~~~l~~~l~~~~~~~ 86 (458)
++.+.+.+.|+||+++|.+||+++|||+||..||..|+.. +...||+||..+... ......++.++..++|..
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTT
T ss_pred HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHh
Confidence 3456678999999999999999999999999999999984 445799999998754 233445677787777643
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-13 Score=104.40 Aligned_cols=61 Identities=23% Similarity=0.654 Sum_probs=51.5
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC-------CCCCCCCccCCCCCCchhhHHHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-------NFKCPNCQSLQPYGLPSVCLIIEH 265 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~l~~ 265 (458)
..+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+....+..|..|.+
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 4568899999999999999999999999999999875 789999999987765655554443
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=2.9e-12 Score=104.51 Aligned_cols=65 Identities=20% Similarity=0.434 Sum_probs=59.7
Q ss_pred CCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 206 VDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
.+.+.|+||++.+.+|+++ +|||+||..|+..|+.....||+||..+....+..|..+.++++.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 3568899999999999998 9999999999999999889999999999877788899999999887
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=96.95 Aligned_cols=56 Identities=18% Similarity=0.483 Sum_probs=49.0
Q ss_pred hhhhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
.+++.+++.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||+||..+...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3457788899999999999999997 99999999999999974 46899999998643
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.7e-12 Score=94.31 Aligned_cols=55 Identities=25% Similarity=0.580 Sum_probs=48.2
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 34667889999999999999999999999999999999962 45679999998864
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=95.15 Aligned_cols=56 Identities=29% Similarity=0.713 Sum_probs=48.7
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhc-CCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNS-WHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~-~~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.+.|+||++.+.+|++++|||+||..||..|+.. .....||+||..+..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34677889999999999999999999999999999999873 245679999998864
No 26
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=1.2e-11 Score=104.08 Aligned_cols=63 Identities=24% Similarity=0.494 Sum_probs=58.2
Q ss_pred CCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 206 VDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
.+.+.|+||+.+|.+|+++ +|||+||..||..|+. ..||+||..+....+..|..|.+++..+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHH
Confidence 4678999999999999999 9999999999999987 7899999999877888999999999877
No 27
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.19 E-value=1.5e-11 Score=95.94 Aligned_cols=68 Identities=31% Similarity=0.739 Sum_probs=56.9
Q ss_pred hhcccCCCCccccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 308 ASLWLGNGPKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 308 ~~~~~~~~~~~h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
..+.......+|.++.||.|...||.|.||+|.+|...++||||+.|+... ++++.|.+.|+|+.+..
T Consensus 8 ~~~~~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g-----~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 8 QQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL-----HETDIHKEDHQLEPIYR 75 (82)
T ss_dssp SSSCSSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC-----CCCSSCCSSSCEEEECS
T ss_pred hhhhccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCc-----cccCCCCCCCCEEEeeC
Confidence 344555677889999999999999999999999999444499999999985 45668999999999765
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.5e-12 Score=97.75 Aligned_cols=51 Identities=27% Similarity=0.685 Sum_probs=46.1
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.....+.|+||++.+.+|++++|||+||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 556778999999999999999999999999999999974 568999999986
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.19 E-value=7.4e-12 Score=102.30 Aligned_cols=56 Identities=27% Similarity=0.761 Sum_probs=49.2
Q ss_pred hhhhcCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.....+.+.+.|+||+++|.+|++ ++|||+||..||..|+...+ ..||+||..+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 345777889999999999999999 99999999999999998632 689999999853
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=1.9e-11 Score=99.35 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=48.6
Q ss_pred hhhhcCCCCCccccccccccCcEEccCC-ChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVLACG-HISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~~Cg-H~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.....+.++|.||||+++|.+||+++|| |+||+.||..|+.. ...||+||..+..
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3446678899999999999999999999 99999999999984 4589999999864
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=3.2e-12 Score=104.49 Aligned_cols=66 Identities=17% Similarity=0.353 Sum_probs=56.1
Q ss_pred CCCCcccccccccCCCceE-cccCchhhHhhhhhccCCC-CCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 205 SVDDLSCAACKKMLFKPVV-LNCGHVFCELCLFVPEDGN-FKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~-l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
..+.+.|+||+++|.+|+. ++|||+||..||..|+... ..||+||..+....+..+..+.++++.+
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHH
Confidence 4467899999999999999 8999999999999998855 7999999998776666677776666554
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=1.6e-11 Score=100.18 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=48.1
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....+.+.+.||||+++|.+||+++|||+||+.||..|+. ....||+||..+..
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH--cCCCCCCCCCCCCh
Confidence 3456778999999999999999999999999999999998 35689999999864
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=1.4e-12 Score=102.87 Aligned_cols=61 Identities=26% Similarity=0.702 Sum_probs=51.5
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC------CCCCCCCccCCCCCCchhhHHHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG------NFKCPNCQSLQPYGLPSVCLIIEH 265 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~l~~ 265 (458)
..+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+....+..|..|.+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3467899999999999999999999999999998764 789999999988766666655443
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=91.14 Aligned_cols=50 Identities=32% Similarity=0.760 Sum_probs=44.1
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcC-CCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW-HESNCPVC 61 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~-~~~~CP~C 61 (458)
.++.+.+.+.|+||++.+.+|++++|||+||+.||..|+... ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356788999999999999999999999999999999999842 45679998
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=6.1e-12 Score=97.92 Aligned_cols=56 Identities=36% Similarity=0.774 Sum_probs=48.8
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcC-----CCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW-----HESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~-----~~~~CP~Cr~~~~~ 67 (458)
.++.+.+.+.|+||++.+.+|++++|||+||..||..|+... ....||+||..+..
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 346778899999999999999999999999999999998752 25689999998863
No 36
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=7.9e-12 Score=97.93 Aligned_cols=58 Identities=24% Similarity=0.524 Sum_probs=49.4
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLII 263 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l 263 (458)
....+.|+||++.+.+|++++|||+||..|+..|+.....||+||..+. ..+..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 3457899999999999999999999999999999988889999999986 345555443
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=2.4e-11 Score=95.70 Aligned_cols=56 Identities=41% Similarity=0.793 Sum_probs=49.3
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcC----CCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW----HESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~----~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.+.|+||++.+.+|++++|||+||..||..|+... +...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356678899999999999999999999999999999999863 26789999998863
No 38
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=92.25 Aligned_cols=52 Identities=35% Similarity=0.821 Sum_probs=46.2
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccC---CCCCCCCCccCCCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED---GNFKCPNCQSLQPYGL 256 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~~~ 256 (458)
..+.+.|+||++.+.+|++++|||+||..|+..|+. ....||+||..+....
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999999999999999999999999986 5679999999887643
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=99.18 Aligned_cols=55 Identities=22% Similarity=0.650 Sum_probs=48.2
Q ss_pred hhhhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..++.+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ....||+||..+..
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp GGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred hHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 3456677889999999999999997 8999999999999998 44689999998864
No 40
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=99.97 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=58.2
Q ss_pred CCCCcccccccccCCCceEcc-cCchhhHhhhhhccCC------CCCCCC--CccC-CCCCCchhhHHHHHHHHHh
Q 043080 205 SVDDLSCAACKKMLFKPVVLN-CGHVFCELCLFVPEDG------NFKCPN--CQSL-QPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~-CgH~fC~~Cl~~~~~~------~~~CP~--Cr~~-~~~~~~~~~~~l~~l~~~~ 270 (458)
..+.+.||||+++|.+||+++ |||+||+.||..|+.. ...||+ |+.. +....+..|..|.++++.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 346899999999999999996 9999999999999863 468999 9877 7777788899999999988
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-12 Score=102.09 Aligned_cols=60 Identities=25% Similarity=0.614 Sum_probs=50.7
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC------CCCCCCCccCCCCCCchhhHHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG------NFKCPNCQSLQPYGLPSVCLIIE 264 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~l~ 264 (458)
..+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+....+..|..|.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 4467899999999999999999999999999998764 78999999998766565554443
No 42
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=7.3e-11 Score=87.25 Aligned_cols=57 Identities=26% Similarity=0.706 Sum_probs=49.6
Q ss_pred CCccccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 315 GPKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 315 ~~~~h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
....|. +.||.|...||.|.||+|..|. +||||..|+..+ +..+.|...|+|+.+.+
T Consensus 6 ~~v~H~-~~Cd~C~~~pi~G~RykC~~C~---d~DLC~~C~~~g-----~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 6 SGVFHP-VECSYCHSESMMGFRYRCQQCH---NYQLCQDCFWRG-----HAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp SSCCSC-SCCSSSCCCSSCSCEEEESSCS---SCEECHHHHHHC-----CCCSSSCTTCCEEEECC
T ss_pred CCceeC-CCCcCCCCcceecceEEecCCC---CchhHHHHHhCC-----CcCCCCCCCCCEEEEeC
Confidence 445666 9999999999999999999999 999999999985 45568999999998754
No 43
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.6e-11 Score=92.75 Aligned_cols=53 Identities=25% Similarity=0.594 Sum_probs=47.2
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCc
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 257 (458)
..+.+.|+||++.+.+|+++ +|||+||..||..|+.....||+||..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 45678999999999999998 999999999999999878899999998876543
No 44
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=90.21 Aligned_cols=51 Identities=31% Similarity=0.658 Sum_probs=45.6
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCCccCCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPYG 255 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~ 255 (458)
..+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 356789999999999999999999999999999994 677899999987654
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=87.35 Aligned_cols=50 Identities=38% Similarity=0.786 Sum_probs=43.7
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhc-CCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNS-WHESNCPVC 61 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~-~~~~~CP~C 61 (458)
.++.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. .....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34677889999999999999999999999999999999764 345679988
No 46
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=92.03 Aligned_cols=51 Identities=29% Similarity=0.675 Sum_probs=44.8
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
....+.+.|+||++.+.+|+.++|||+||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 344567899999999999999999999999999999874 368999999875
No 47
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=94.13 Aligned_cols=56 Identities=39% Similarity=0.771 Sum_probs=49.0
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhc----CCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNS----WHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~----~~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. .+...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34677889999999999999999999999999999999875 246789999998863
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=2.2e-11 Score=101.42 Aligned_cols=65 Identities=23% Similarity=0.570 Sum_probs=55.6
Q ss_pred CCcccccccccCCCceEcccCchhhHhhhhhccCC---CCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG---NFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~---~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+....+..+..+.++++.+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 56789999999999999999999999999999864 358999999998777777777777777664
No 49
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.3e-11 Score=94.06 Aligned_cols=56 Identities=27% Similarity=0.679 Sum_probs=48.6
Q ss_pred hhhcCCCCCccccccccccC----cEEccCCChhhHHhHHHHHhcC-CCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYK----PVVLACGHISCFWCVYNAMNSW-HESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~----Pv~~~CgH~FC~~Ci~~~~~~~-~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.+.|+||++.|.+ |+.++|||+||..||..|+... +...||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 35677889999999999998 9999999999999999999864 34689999998753
No 50
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=3.6e-11 Score=92.49 Aligned_cols=50 Identities=28% Similarity=0.728 Sum_probs=44.0
Q ss_pred CCCCcccccccccCCCceEcc-cCchhhHhhhhhccCC--CCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLN-CGHVFCELCLFVPEDG--NFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~-CgH~fC~~Cl~~~~~~--~~~CP~Cr~~~~~ 254 (458)
..+.+.|+||++.|.+|++++ |||+||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 456789999999999999999 9999999999999863 4799999997543
No 51
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.7e-11 Score=90.16 Aligned_cols=49 Identities=33% Similarity=0.624 Sum_probs=44.9
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+.+.|+||++.+.+|+.++|||+||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4678899999999999999999999999999999888999999998753
No 52
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=3.8e-11 Score=90.73 Aligned_cols=53 Identities=28% Similarity=0.703 Sum_probs=46.4
Q ss_pred hhcCCCCCccccccccccCc-------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKP-------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~P-------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
...+.+.+.|+||++.+.+| +.++|||+||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 45677889999999999987 88999999999999999985 4589999998753
No 53
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=9.9e-11 Score=94.41 Aligned_cols=52 Identities=27% Similarity=0.458 Sum_probs=44.3
Q ss_pred cCCCCCccccccccccCcEEcc-CCChhhHHhHHHHHhcC----CCCCCCC--CCCC-CC
Q 043080 15 AFSDEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSW----HESNCPV--CRNP-YN 66 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~----~~~~CP~--Cr~~-~~ 66 (458)
.....+.||||+++|.+||+++ |||+||+.||..||... +...||+ |+.. +.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 3467899999999999999995 99999999999999863 3468999 9866 43
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.04 E-value=3.2e-11 Score=107.68 Aligned_cols=72 Identities=28% Similarity=0.579 Sum_probs=54.4
Q ss_pred hhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCCc--hhHHHHHHHHHHchH
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPS--ICHLLHFLLKKLYPL 85 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~--~~~~l~~~l~~~~~~ 85 (458)
.+.+...+.|+||+++|.+|+++ +|||+||..||..|+.. +...||+||..+..... ....+..++..+++.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 34556778999999999999997 99999999999999984 35679999999854322 233466777776663
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.8e-11 Score=100.29 Aligned_cols=52 Identities=35% Similarity=0.814 Sum_probs=46.9
Q ss_pred hhhhcCCCCCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..++.+.+.+.|+||+++|.+||++ +|||+||+.||..|+. ..||+||..+.
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 3467778899999999999999998 9999999999999876 57999999985
No 56
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.1e-10 Score=87.25 Aligned_cols=49 Identities=33% Similarity=0.669 Sum_probs=42.1
Q ss_pred CCCccccccc-cccCc----EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLE-LLYKP----VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~-~l~~P----v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+++.|+||++ ++.+| +.++|||+||..||.+|+.. +...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3678999999 99988 56899999999999999774 45679999999864
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.03 E-value=4.1e-11 Score=106.95 Aligned_cols=70 Identities=20% Similarity=0.429 Sum_probs=59.2
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCC-CCCCCCCccCCC-CCCchhhHHHHHHHHHhhhhH
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDG-NFKCPNCQSLQP-YGLPSVCLIIEHFLEERFSDL 274 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~-~~~~~~~~~l~~l~~~~~~~~ 274 (458)
..+.+.|+||++.|.+|+++ +|||+||..|+..|+.. ...||+||..+. ...+..|..|.+++..+++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 34678999999999999998 99999999999999885 788999999884 345778999999999987753
No 58
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.02 E-value=8.8e-11 Score=89.30 Aligned_cols=52 Identities=29% Similarity=0.723 Sum_probs=44.8
Q ss_pred hcCCCCCccccccccccCc-------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKP-------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~P-------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....+.+.|+||++.+.+| +.++|||+||..||..|+.. ...||+||..+..
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 63 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccCh
Confidence 3456788999999999988 88999999999999999984 3589999999864
No 59
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=86.71 Aligned_cols=44 Identities=41% Similarity=1.003 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccC---CCCCCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED---GNFKCPNC 248 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~---~~~~CP~C 248 (458)
..+.+.|+||++.+.+|++++|||+||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456889999999999999999999999999999986 56789998
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=4.7e-11 Score=100.53 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=54.5
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCCC-CCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGN-FKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
..+.+.|+||++.+.+|++++|||+||..|+..|+... ..||+||..+....+..+..+.+++..+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 45678999999999999999999999999999998743 4999999998766555666666666554
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.1e-10 Score=104.72 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=60.1
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
..+.+.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++....+.+|..|.+++..+.
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 3468999999999999999999999999999999873 347999999998888899999999999883
No 62
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.1e-10 Score=98.36 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=48.6
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.++.+.+.+.|+||++++.+|++++|||+||+.||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence 457788899999999999999999999999999999999853 2489999998864
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.2e-10 Score=96.75 Aligned_cols=55 Identities=35% Similarity=0.818 Sum_probs=47.4
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcC-CCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSW-HESNCPVCRNPYNH 67 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~-~~~~CP~Cr~~~~~ 67 (458)
++.+...+.|+||++.+.+|++++|||+||..||..|+... +...||+||..+..
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45566788999999999999999999999999999999853 33579999998863
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=8.5e-11 Score=113.52 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=59.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCchhhHHHHHHHHHhh
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLPSVCLIIEHFLEERF 271 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~ 271 (458)
...+.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++....+.+|..|.++++.+.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 468999999999999999999999999999999873 445999999998878889999999999885
No 65
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.98 E-value=2e-10 Score=89.19 Aligned_cols=55 Identities=29% Similarity=0.649 Sum_probs=44.5
Q ss_pred hhcCCCCCcccccccccc--CcEEcc--CCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLY--KPVVLA--CGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~--~Pv~~~--CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
...+++++.||||++.+. ++++++ |||+||+.|+..++.. ....||.||+.+...
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 355788999999999884 455555 9999999999998864 457899999998754
No 66
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.3e-10 Score=86.96 Aligned_cols=52 Identities=33% Similarity=0.634 Sum_probs=44.0
Q ss_pred CCcccccccc-cCCCc----eEcccCchhhHhhhhhccC-CCCCCCCCccCCCCCCch
Q 043080 207 DDLSCAACKK-MLFKP----VVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPYGLPS 258 (458)
Q Consensus 207 ~~l~C~iC~~-~~~~p----v~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~~~ 258 (458)
+++.|+||++ ++.+| ++++|||+||..|+.+|+. ....||+||..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 4678999999 99998 5679999999999999954 567899999998766544
No 67
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.3e-10 Score=84.35 Aligned_cols=47 Identities=34% Similarity=0.740 Sum_probs=41.7
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
.+.+.|+||++.|.+|++++|||+||..|+.. ....||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 46789999999999999999999999999987 367899999988654
No 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.97 E-value=1.9e-10 Score=96.42 Aligned_cols=53 Identities=30% Similarity=0.740 Sum_probs=46.5
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+.+.+.|+||++++.+|+.++|||+||..||..|+.. ....||+||..+..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCH
Confidence 455678899999999999999999999999999999985 24579999999864
No 69
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=9.9e-11 Score=84.92 Aligned_cols=46 Identities=26% Similarity=0.631 Sum_probs=40.4
Q ss_pred CCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+.+.|+||++.|.+|++++|||+||..||.. ....||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 56788999999999999999999999999876 34579999998864
No 70
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.96 E-value=8.8e-11 Score=101.96 Aligned_cols=53 Identities=25% Similarity=0.657 Sum_probs=47.0
Q ss_pred hhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+.+++.+.|+||+++|.+||+++|||+||+.||..|+.. +...||+||..+.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 4678899999999999999999999999999999999874 4457999998763
No 71
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2e-10 Score=91.13 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCC----ceEcccCchhhHhhhhhccCC---CCCCCCCccCCCCC
Q 043080 205 SVDDLSCAACKKMLFK----PVVLNCGHVFCELCLFVPEDG---NFKCPNCQSLQPYG 255 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~----pv~l~CgH~fC~~Cl~~~~~~---~~~CP~Cr~~~~~~ 255 (458)
..+.+.|+||++.|.+ |++++|||+||..|+..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4567899999999998 999999999999999999874 48999999987653
No 72
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=84.72 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=43.4
Q ss_pred hcCCCCCcccccccccc---CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLY---KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
........|+||++.|. .++.++|||.||..||..|+.. ...||+||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 45567788999999885 4567999999999999999985 3469999998864
No 73
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.94 E-value=4.1e-10 Score=100.96 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..+...+.||||+++|.+||+++|||+||+.||..|+...+. .||+||..+..
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 456789999999999999999999999999999999986443 69999998864
No 74
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.94 E-value=2.3e-10 Score=85.02 Aligned_cols=48 Identities=29% Similarity=0.802 Sum_probs=42.4
Q ss_pred CCCccccccccccCc-------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKP-------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~P-------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+.+.|+||++.+.+| +.++|||+||..||.+|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 467899999999887 78999999999999999985 4589999998864
No 75
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.94 E-value=1.2e-10 Score=88.59 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=46.5
Q ss_pred CCCCcccccccccCCCc-------eEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCc
Q 043080 205 SVDDLSCAACKKMLFKP-------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~p-------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 257 (458)
..+.+.|+||++.+.+| +.++|||+||..|+..|+.....||+||..+....+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34678899999999988 888999999999999999888899999998876543
No 76
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.93 E-value=4.1e-10 Score=81.08 Aligned_cols=49 Identities=37% Similarity=0.643 Sum_probs=41.9
Q ss_pred CCCCCccccccccccC---cEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYK---PVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~---Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+++...|+||++.+.. ++.++ |||.||..||.+|+.. ...||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 4567889999999987 77786 9999999999999874 568999998763
No 77
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.5e-10 Score=87.41 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=44.4
Q ss_pred CCCCcccccccccCCCc-------eEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLFKP-------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~p-------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
..+.+.|+||++.+.+| +.++|||.||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678899999999987 888999999999999999888899999998754
No 78
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.93 E-value=4e-10 Score=87.40 Aligned_cols=53 Identities=26% Similarity=0.539 Sum_probs=44.6
Q ss_pred hhcCCCCCccccccccccCc---EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKP---VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~P---v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+.+...+.|+||++.|..+ +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCC
Confidence 45567789999999999865 44799999999999999974 4689999999864
No 79
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=81.66 Aligned_cols=44 Identities=36% Similarity=0.908 Sum_probs=39.4
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhcc---CCCCCCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPE---DGNFKCPNC 248 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~---~~~~~CP~C 248 (458)
..+.+.|+||++.+.+|++++|||+||..||..|+ .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34678999999999999999999999999999994 467889988
No 80
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=4.3e-10 Score=108.55 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=45.7
Q ss_pred cCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+...+.||||+++|.+||+++|||+||+.||..|+...+ ..||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCch
Confidence 4557999999999999999999999999999999998643 349999999864
No 81
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.91 E-value=5.4e-10 Score=80.38 Aligned_cols=47 Identities=30% Similarity=0.651 Sum_probs=40.8
Q ss_pred CCCccccccccccC----cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYK----PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~----Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
....|+||++.+.+ ++.++|||.||..||..|+... ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 46789999999965 7779999999999999999854 68999998764
No 82
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.90 E-value=5.1e-10 Score=105.17 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=49.3
Q ss_pred hhhhhcCCCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCC--CCCCCC
Q 043080 10 LADKEAFSDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPV--CRNPYN 66 (458)
Q Consensus 10 ~~~~~~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~--Cr~~~~ 66 (458)
+-.+......+.||||+++|.+||+ +.|||+||+.||..||...+...||+ |+..+.
T Consensus 172 DI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 172 DLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred cceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3345667889999999999999998 59999999999999998655678999 999875
No 83
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.5e-10 Score=87.79 Aligned_cols=53 Identities=28% Similarity=0.751 Sum_probs=46.6
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.++.+.+.+.|+||++.+.+ +.++|||+||..||..|+. ....||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 35677888999999999999 8899999999999999987 56789999998864
No 84
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.89 E-value=9.2e-10 Score=79.21 Aligned_cols=48 Identities=29% Similarity=0.519 Sum_probs=42.6
Q ss_pred CCCcccccccccCCC---ceEcc-cCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFK---PVVLN-CGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~---pv~l~-CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.+...|+||++.+.. ++.++ |||.||..|+..|+.....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999987 78886 9999999999999998999999998753
No 85
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=3.8e-10 Score=97.95 Aligned_cols=50 Identities=26% Similarity=0.627 Sum_probs=44.3
Q ss_pred CCCCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCC
Q 043080 204 VSVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQP 253 (458)
Q Consensus 204 ~~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~ 253 (458)
...+.+.|+||+.+|.+|++++|||+||..||..|+.. ...||+||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678999999999999999999999999999999874 458999999753
No 86
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5e-10 Score=85.88 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=45.1
Q ss_pred hhcCCCCCccccccccccCcEE---ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 13 KEAFSDEFKCCVCLELLYKPVV---LACGHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 13 ~~~l~~~~~C~IC~~~l~~Pv~---~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
+..+.....|+||++.|..+.. ++|||.||..||..|+... ..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCcccccc
Confidence 4567778899999999987654 4999999999999999853 4899999998653
No 87
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.89 E-value=5.3e-10 Score=84.23 Aligned_cols=48 Identities=27% Similarity=0.705 Sum_probs=41.8
Q ss_pred CCCCccccccccccCc-EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKP-VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~P-v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.....|+||++.+.+| +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 3467899999999997 67999999999999999874 368999999875
No 88
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.88 E-value=2e-10 Score=88.32 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=45.3
Q ss_pred hhhhhcCCCCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 10 ~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....+.+.+.+.|+||++.+.+|++++|||+ ||..|+..| ..||+||..+..
T Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred HHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 3445677788999999999999999999999 999999876 479999998864
No 89
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=7.4e-10 Score=85.83 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=44.1
Q ss_pred CCCcccccccccCCCc---eEcccCchhhHhhhhhccCCCCCCCCCccCCCCCC
Q 043080 206 VDDLSCAACKKMLFKP---VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGL 256 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p---v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 256 (458)
...+.|+||++.|..+ +.++|||.||..||..|+.....||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 4578899999999866 45699999999999999998899999999886543
No 90
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.88 E-value=8.4e-10 Score=88.80 Aligned_cols=54 Identities=31% Similarity=0.818 Sum_probs=48.3
Q ss_pred CCccccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCCC
Q 043080 315 GPKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQPT 381 (458)
Q Consensus 315 ~~~~h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~~ 381 (458)
.+..|.++.||.|...||.|.||+|..|. +||||+.|+... .| +.|.|..+...
T Consensus 25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~---d~DLC~~C~~~~---------~H-~~H~f~~i~~~ 78 (98)
T 2dip_A 25 RLDKHLGIPCNNCKQFPIEGKCYKCTECI---EYHLCQECFDSY---------CH-LSHTFTFREKR 78 (98)
T ss_dssp CCSSCCCCCCSSSCCSSCCSCEEEESSSS---SCEEEHHHHHTT---------SG-GGSCEEECCSS
T ss_pred cccccCCCCCcCCCCCCcccCeEECCCCC---CccHHHHHHccC---------CC-CCCCeeEecCC
Confidence 36689999999999999999999999999 999999999986 36 89999887653
No 91
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.87 E-value=2.4e-10 Score=84.89 Aligned_cols=51 Identities=29% Similarity=0.556 Sum_probs=44.8
Q ss_pred CCcccccccccCCCc-------eEcccCchhhHhhhhhccCCCCCCCCCccCCCCCCc
Q 043080 207 DDLSCAACKKMLFKP-------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 207 ~~l~C~iC~~~~~~p-------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 257 (458)
+.+.|+||++.+.+| +.++|||.||..|+..|+.....||+||..+....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 467899999999887 788999999999999999888899999998876443
No 92
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=3.7e-10 Score=94.61 Aligned_cols=63 Identities=25% Similarity=0.521 Sum_probs=49.8
Q ss_pred CCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCc-hhhHHHHHHHHH
Q 043080 207 DDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLP-SVCLIIEHFLEE 269 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~-~~~~~l~~l~~~ 269 (458)
+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+....+ ..+..+.+++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 46889999999999999999999999999999874 7789999998865432 233444444443
No 93
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=9.5e-10 Score=103.36 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCCCcccccccccCCCceEc-ccCchhhHhhhhhccCC--CCCCCC--CccCCCCCCchhhHHHHHHHHHh
Q 043080 205 SVDDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDG--NFKCPN--CQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
....++||||+.+|.+||+. .|||+||+.||..|+.. ...||+ |++.+....+.+|..|.++++.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 45789999999999999986 99999999999999874 468999 99999888899999999999876
No 94
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.86 E-value=6.4e-10 Score=83.77 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=43.2
Q ss_pred CCCcccccccccCCCc-eEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKP-VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p-v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.....|+||++.+.+| +.++|||.||..|+..|+.....||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3567899999999997 677999999999999999878899999998753
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.85 E-value=6.8e-10 Score=79.88 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=41.5
Q ss_pred CCcccccccccCCC----ceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFK----PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~----pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
....|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999866 778899999999999999987799999998764
No 96
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=87.54 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=42.9
Q ss_pred cCCCCCccccccccccC---cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYK---PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~---Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.......|+||++.|.. ++.++|||.||..||..|+. ....||+||..+.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCC
Confidence 34567889999999886 77799999999999999997 4458999999875
No 97
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=8.2e-10 Score=83.71 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=44.4
Q ss_pred CCCcccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
.+.+.|+||++.+.+ +.++|||.||..|+..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 457889999999999 8999999999999999999999999999987643
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=9.2e-10 Score=84.68 Aligned_cols=51 Identities=27% Similarity=0.528 Sum_probs=43.4
Q ss_pred cCCCCCccccccccccCc---EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYKP---VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~P---v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.......|+||++.|..+ +.++|||.||..||..|+.. ...||+||+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 345678999999999877 66899999999999999985 3589999998753
No 99
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=1.8e-09 Score=83.75 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=42.4
Q ss_pred CCCCcccccccccCC--CceEcc--cCchhhHhhhhhccC-CCCCCCCCccCCCCCC
Q 043080 205 SVDDLSCAACKKMLF--KPVVLN--CGHVFCELCLFVPED-GNFKCPNCQSLQPYGL 256 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~--~pv~l~--CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~ 256 (458)
.++++.||||++.+. +++.++ |||+||..|+..++. ....||.||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 467899999999884 445555 999999999998875 5688999999887643
No 100
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=97.50 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=48.5
Q ss_pred hhhcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+..+.+.+.|+||+++|.+||.++|||+||+.||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 456788999999999999999999999999999999998753 3489999998864
No 101
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=7.3e-10 Score=99.28 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=53.1
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccCC-CCCCCCCccCCCCCCchhhHHHHHHHHH
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPEDG-NFKCPNCQSLQPYGLPSVCLIIEHFLEE 269 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~l~~~ 269 (458)
..+.+.|+||+.+|.+|++++|||+||..|+..|+.. ...||+||..+....+..+..+.+++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 4578999999999999999999999999999999863 4599999998876555555555555554
No 102
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=86.37 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=43.9
Q ss_pred CCCcccccccccCCC---ceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFK---PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~---pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+...|+||++.|.. ++.++|||.||..||..|+.....||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 457789999999887 7788999999999999999988999999998764
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.80 E-value=2.5e-09 Score=89.13 Aligned_cols=50 Identities=24% Similarity=0.566 Sum_probs=41.5
Q ss_pred CCCccccccccccCcE------------------EccCCChhhHHhHHHHHhc---CCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPV------------------VLACGHISCFWCVYNAMNS---WHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv------------------~~~CgH~FC~~Ci~~~~~~---~~~~~CP~Cr~~~~~ 67 (458)
.+..|+||++.|..|+ .++|||.||..||..|+.. .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997765 6899999999999999964 235679999998864
No 104
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=7.9e-10 Score=85.16 Aligned_cols=53 Identities=23% Similarity=0.590 Sum_probs=44.6
Q ss_pred hhhhhcCCCCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 10 ~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
....+.+.+.+.|+||++.+.+|++++|||. ||..|+... ..||+||..+...
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 3445667778899999999999999999999 999999642 4799999998653
No 105
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=81.37 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=42.8
Q ss_pred CCCcccccccccCC---CceEcccCchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLF---KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
.....|+||++.|. .++.++|||.||..|+..|+.....||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999885 457789999999999999998778899999987654
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.8e-09 Score=83.05 Aligned_cols=49 Identities=24% Similarity=0.406 Sum_probs=43.3
Q ss_pred CCCcccccccccCCCc---eEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKP---VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p---v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+...|+||++.|..+ +.++|||.||..|+..|+.....||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3567899999999887 678999999999999999888899999998754
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.74 E-value=1.9e-09 Score=91.97 Aligned_cols=52 Identities=29% Similarity=0.583 Sum_probs=46.4
Q ss_pred CCCCcccccccccCCCc-------eEcccCchhhHhhhhhccCCCCCCCCCccCCCCCC
Q 043080 205 SVDDLSCAACKKMLFKP-------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPYGL 256 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~p-------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 256 (458)
..+.+.|+||++.|.+| ++++|||+||..||.+|+.....||+||+.+....
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 34678999999999998 89999999999999999998899999999887643
No 108
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.71 E-value=3.6e-09 Score=81.19 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=40.6
Q ss_pred CCCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+.+.|+||++.+.+|++++|||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 356789999999999999999999 999999887 789999998764
No 109
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=3.8e-09 Score=80.92 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=42.0
Q ss_pred CCCcccccccccCCCceEc---ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVL---NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.....|+||++.|..+..+ +|||.||..||..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3567899999999876444 999999999999999877899999998754
No 110
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.64 E-value=1.1e-08 Score=85.23 Aligned_cols=48 Identities=29% Similarity=0.726 Sum_probs=41.0
Q ss_pred CCcccccccccCCCce------------------EcccCchhhHhhhhhcc-----CCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPV------------------VLNCGHVFCELCLFVPE-----DGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv------------------~l~CgH~fC~~Cl~~~~-----~~~~~CP~Cr~~~~~ 254 (458)
.+..|+||++.|..|. .++|||.||..||..|+ .....||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999997764 67999999999999998 567899999998754
No 111
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=6.9e-09 Score=79.83 Aligned_cols=46 Identities=26% Similarity=0.643 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
.+.+.|+||++.+.+|++++|||. ||..|+... ..||+||..+...
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 456789999999999999999999 999999753 7899999988653
No 112
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.6e-08 Score=78.92 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=38.8
Q ss_pred CCCccccccccccC--------------cEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYK--------------PVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~--------------Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+...|+||++.|.. ++.+ +|||.||..||.+|+.. ..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 46679999999976 4455 59999999999999984 358999999875
No 113
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=3.6e-09 Score=82.30 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=44.8
Q ss_pred hhhhhcCCCCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 10 LADKEAFSDEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 10 ~~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
...++.+.+...|+||++.+.++++++|||. ||..|+..+ ..||+||..+..
T Consensus 9 ~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred HHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhC
Confidence 4456677788899999999999999999999 999999764 279999999864
No 114
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.2e-08 Score=77.22 Aligned_cols=48 Identities=29% Similarity=0.576 Sum_probs=40.6
Q ss_pred CCcccccccccCCC--------------ceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFK--------------PVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~--------------pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
++..|+||++.|.. ++.+ +|||.||..||.+|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45679999998866 4555 599999999999999988999999998753
No 115
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.54 E-value=3.8e-08 Score=98.23 Aligned_cols=53 Identities=28% Similarity=0.503 Sum_probs=45.4
Q ss_pred hcCCCCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 14 EAFSDEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 14 ~~l~~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+.......|+||++.+.+|+.++|||+||..|+..|+.. ....||+||..+..
T Consensus 327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred hhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 344556899999999999999999999999999999873 45679999998864
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.53 E-value=3e-08 Score=73.77 Aligned_cols=48 Identities=27% Similarity=0.689 Sum_probs=41.6
Q ss_pred CCCccccccccccCcEEc--cCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVL--ACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~--~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+...|+||++.+.+++.+ +|||. ||..|+..++. ....||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 456799999999999987 99999 89999999887 34579999998853
No 117
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.51 E-value=2.9e-08 Score=73.81 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=42.5
Q ss_pred CCcccccccccCCCceEc--ccCch-hhHhhhhhccCCCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHV-FCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
++..|+||++.+.+++.+ +|||. ||..|+..+......||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999999999987 99999 899999999887889999999875
No 118
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.49 E-value=6.9e-08 Score=79.24 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=39.6
Q ss_pred CCCccccccccccCc------------------EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKP------------------VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~P------------------v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
....|+||++.|..+ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 456799999998865 33799999999999999984 568999999864
No 119
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.49 E-value=4.1e-08 Score=72.78 Aligned_cols=47 Identities=21% Similarity=0.651 Sum_probs=40.7
Q ss_pred CCccccccccccCcEEc--cCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVL--ACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~--~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
...|+||++...+++.+ +|||. ||..|+..++.. ...||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 45799999999999887 99998 999999998863 3679999998863
No 120
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.44 E-value=4.8e-08 Score=72.38 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=42.2
Q ss_pred CCcccccccccCCCceEc--ccCch-hhHhhhhhccCCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHV-FCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
....|+||++...+++++ ||||. ||..|+..+......||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 345799999999999888 99998 9999999988777899999998753
No 121
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.43 E-value=6.2e-08 Score=75.21 Aligned_cols=44 Identities=27% Similarity=0.627 Sum_probs=39.2
Q ss_pred CCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
+...|+||++.+.+++.++|||. ||..|+..+ ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 45689999999999999999999 999999876 389999998754
No 122
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.42 E-value=8.2e-08 Score=70.58 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCccccccccccCcEEc-cCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKPVVL-ACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~l~~Pv~~-~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+.|+|+++++.+||.+ ++||+|++.||.+|+...+ .||+.+..+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 47899999999999998 9999999999999998643 59999988853
No 123
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=2e-07 Score=74.78 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=38.8
Q ss_pred CCCccccccccccCcEEc---cCCChhhHHhHHHHHhcC---C---CCCCCC--CCCC
Q 043080 18 DEFKCCVCLELLYKPVVL---ACGHISCFWCVYNAMNSW---H---ESNCPV--CRNP 64 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~---~CgH~FC~~Ci~~~~~~~---~---~~~CP~--Cr~~ 64 (458)
..+.|+||++.+..|+++ +|||.||+.||..++... + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999888663 699999999999998742 2 357999 9887
No 124
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.40 E-value=5.4e-08 Score=68.82 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=38.9
Q ss_pred ccccccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 319 HFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 319 h~~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
+.++.||.|... | |.||+|..|. +||||..|+... .| .|+|..+..
T Consensus 4 ~~~~~Cd~C~~~-i-g~R~~C~~C~---dyDLC~~C~~~~---------~H--~H~m~~~~~ 49 (52)
T 1tot_A 4 RFVYTCNECKHH-V-ETRWHCTVCE---DYDLCINCYNTK---------SH--THKMVKWGL 49 (52)
T ss_dssp SSCEEETTTTEE-E-SSEEEESSSS---SCEECHHHHHHH---------CC--CSSEEEECS
T ss_pred cCEEECCCCCCC-C-cceEEcCCCC---CchhHHHHHhCC---------CC--CCceEEecC
Confidence 345899999975 4 8999999999 999999999996 35 699998764
No 125
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.4e-08 Score=72.22 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=39.1
Q ss_pred CCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
+...|.||++...++++++|||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 47889999999999999999999 99999984 2479999999864
No 126
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.38 E-value=9.6e-08 Score=95.34 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=44.5
Q ss_pred CCCCcccccccccCCCceEcccCchhhHhhhhhccC-CCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHVFCELCLFVPED-GNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~ 254 (458)
......|+||++.+.+|+.++|||+||..|+..|.. ....||+||..+..
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 334578999999999999999999999999999987 68899999998754
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.38 E-value=4.8e-08 Score=96.84 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=45.0
Q ss_pred hhhhcCCCCCccccccccccCcEEccCCCh-hhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 11 ADKEAFSDEFKCCVCLELLYKPVVLACGHI-SCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 11 ~~~~~l~~~~~C~IC~~~l~~Pv~~~CgH~-FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
..++.+++.+.|+||++.+.+|++++|||+ ||..|+..+ ..||+||..+..
T Consensus 287 ~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 287 EQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred HHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 346777889999999999999999999999 999999865 479999998864
No 128
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2e-07 Score=70.13 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+...|+||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 356789999999999999999999 99999985 4789999998754
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.37 E-value=1.8e-07 Score=76.80 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCc------------------eEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKP------------------VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p------------------v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.++..|+||++.|..+ +.++|||.||..||..|+.....||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3566799999998865 34699999999999999999999999999754
No 130
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=1e-07 Score=76.46 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=38.2
Q ss_pred CCcccccccccCCCceEc---ccCchhhHhhhhhccC--------CCCCCCC--CccC
Q 043080 207 DDLSCAACKKMLFKPVVL---NCGHVFCELCLFVPED--------GNFKCPN--CQSL 251 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~--------~~~~CP~--Cr~~ 251 (458)
+.++|+||++.+..|+.+ +|||.||..|+..++. ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 568899999999988665 7999999999998865 2468999 9987
No 131
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=1.1e-07 Score=69.87 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=43.6
Q ss_pred CcccccccccCCCceEc-ccCchhhHhhhhhccCCCCCCCCCccCCCCCCc
Q 043080 208 DLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGNFKCPNCQSLQPYGLP 257 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 257 (458)
.+.|||+++++.+||++ ++||+|++.||.+|+.....||+.+.++....+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 47899999999999999 999999999999999866679999998865433
No 132
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=6.1e-07 Score=69.67 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=43.0
Q ss_pred CCCCcccccccccc--CcEEccCC-----ChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLY--KPVVLACG-----HISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 17 ~~~~~C~IC~~~l~--~Pv~~~Cg-----H~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.+...|.||++.+. .++.++|. |.|+..||.+|+...+...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34568999998774 68889996 99999999999997666789999998853
No 133
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.17 E-value=5e-07 Score=89.53 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=41.4
Q ss_pred CCCCcccccccccCCCceEcccCch-hhHhhhhhccCCCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCGHV-FCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
..+++.|+||++.+.+|+.++|||. ||..|+..+ ..||+||..+..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999999999999999999 999999977 689999998754
No 134
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.16 E-value=2.7e-07 Score=76.85 Aligned_cols=46 Identities=20% Similarity=0.527 Sum_probs=0.4
Q ss_pred CCccccccccccCc-----------------EE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLYKP-----------------VV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 19 ~~~C~IC~~~l~~P-----------------v~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-.|+||++.|..+ ++ ++|+|.||..||..|+.. ...||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 46899999999763 22 589999999999999984 568999999864
No 135
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.10 E-value=2.3e-07 Score=77.31 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=1.4
Q ss_pred CCCcccccccccCCCc-----------------eE-cccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 206 VDDLSCAACKKMLFKP-----------------VV-LNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p-----------------v~-l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
...-.|+||++.|..+ ++ ++|+|.||..||..|+.....||+||..+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3456899999998763 22 489999999999999998899999999754
No 136
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=6.6e-06 Score=62.59 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=41.7
Q ss_pred CCCCccccccccccCcEE-ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+....|.||.+++..-+. ..|+|.|+..||.+|++..+...||+||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345679999999986555 48999999999999998655578999998875
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=5.6e-06 Score=64.16 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCCCcccccccccCC--CceEcccC-----chhhHhhhhhccC--CCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLF--KPVVLNCG-----HVFCELCLFVPED--GNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~--~pv~l~Cg-----H~fC~~Cl~~~~~--~~~~CP~Cr~~~~~ 254 (458)
..+...|.||+..+. +++++||. |.|+..||.+|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345678999998774 68888996 9999999999987 34699999998754
No 138
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=5.3e-05 Score=57.57 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=40.0
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhhhhhccCCC--CCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDGN--FKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~~--~~CP~Cr~~~~~ 254 (458)
....|.||..++..-+.- .|+|.|+..||.+|++.. ..||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345799999999855444 899999999999999866 899999997754
No 139
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.62 E-value=3.2e-05 Score=56.38 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=40.2
Q ss_pred CCCccccccccccCcEEccCC--C---hhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACG--H---ISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~Cg--H---~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+...|.||++....+..+||. + .|+..||.+|+...+...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455699999887777777854 4 799999999998767788999998874
No 140
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.43 E-value=7.3e-05 Score=59.29 Aligned_cols=46 Identities=22% Similarity=0.539 Sum_probs=37.0
Q ss_pred ccccccccccCc-EEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 21 KCCVCLELLYKP-VVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 21 ~C~IC~~~l~~P-v~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
.|++|.-.+..- ..++|.|+||..|+..|..+ +...||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeee
Confidence 588898877644 44899999999999998764 45679999998853
No 141
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.11 E-value=0.00087 Score=53.90 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=27.2
Q ss_pred CCccccccccc-CCCceE--cccCchhhHhhhhh
Q 043080 207 DDLSCAACKKM-LFKPVV--LNCGHVFCELCLFV 237 (458)
Q Consensus 207 ~~l~C~iC~~~-~~~pv~--l~CgH~fC~~Cl~~ 237 (458)
+++.|+||.+. +..|+. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 46889999974 778888 89999999999997
No 142
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.10 E-value=0.0002 Score=56.74 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=36.9
Q ss_pred ccccccccCCC-ceEcccCchhhHhhhhhcc-CCCCCCCCCccCCCC
Q 043080 210 SCAACKKMLFK-PVVLNCGHVFCELCLFVPE-DGNFKCPNCQSLQPY 254 (458)
Q Consensus 210 ~C~iC~~~~~~-pv~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~ 254 (458)
.|++|.-.+.. ...+||.|+||..|+..|. ++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58999877664 4566999999999999886 467899999998753
No 143
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.88 E-value=0.0004 Score=50.47 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCcccccccccCCCceEcccC--c---hhhHhhhhhccC--CCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLFKPVVLNCG--H---VFCELCLFVPED--GNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~Cg--H---~fC~~Cl~~~~~--~~~~CP~Cr~~~~~ 254 (458)
+...|.||+....++..+||. + .|+..||.+|+. +...||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456799999887777777865 3 799999999986 57899999987753
No 144
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.51 E-value=0.00038 Score=67.64 Aligned_cols=50 Identities=20% Similarity=0.619 Sum_probs=38.7
Q ss_pred CCCCccccccccccC----cEE----ccCCChhhHHhHHHHHhcCCC---------CCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYK----PVV----LACGHISCFWCVYNAMNSWHE---------SNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~----Pv~----~~CgH~FC~~Ci~~~~~~~~~---------~~CP~Cr~~~~ 66 (458)
.....|+||+.++.. |.. ..|||.|+..||.+|++.... ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456679999999875 322 379999999999999974321 35999999875
No 145
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.81 E-value=0.0011 Score=64.56 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=38.1
Q ss_pred CCCcccccccccCCC----ceE----cccCchhhHhhhhhccCC-----------CCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFK----PVV----LNCGHVFCELCLFVPEDG-----------NFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~----pv~----l~CgH~fC~~Cl~~~~~~-----------~~~CP~Cr~~~~~ 254 (458)
.....|+||...+.. |.. ..|||.|+..||.+|++. ...||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 356679999998875 322 379999999999999862 1469999997753
No 146
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.64 E-value=0.008 Score=56.16 Aligned_cols=50 Identities=28% Similarity=0.527 Sum_probs=42.0
Q ss_pred CCCccccccccccCcEEcc-CCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLA-CGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~-CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....|.||.+++..-+..+ |+|.|+..|+..|++..+...||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3567999999998777754 9999999999999986666789999987653
No 147
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.21 E-value=0.0064 Score=48.70 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=27.7
Q ss_pred CCCcccccccc-ccCcEE--ccCCChhhHHhHHHH
Q 043080 18 DEFKCCVCLEL-LYKPVV--LACGHISCFWCVYNA 49 (458)
Q Consensus 18 ~~~~C~IC~~~-l~~Pv~--~~CgH~FC~~Ci~~~ 49 (458)
+++.|+||.+. +.+|+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46889999964 788888 999999999999873
No 148
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.14 E-value=0.0085 Score=65.91 Aligned_cols=68 Identities=7% Similarity=-0.123 Sum_probs=61.8
Q ss_pred CCCCcccccccccCCCceEcccC-chhhHhhhhhccCCCCCCCCCccCCCCCCchhhHHHHHHHHHhhh
Q 043080 205 SVDDLSCAACKKMLFKPVVLNCG-HVFCELCLFVPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFS 272 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~pv~l~Cg-H~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~~~ 272 (458)
..+++.|||-.+++.+||+++-| ++|=+..|.+|+.....||.-|.++....+.+|..|+..|+.+..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 34689999999999999999998 699999999999888899999999988888999999999999954
No 149
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.92 E-value=0.036 Score=51.69 Aligned_cols=51 Identities=22% Similarity=0.507 Sum_probs=41.2
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhhhhhccCC--CCCCCCCccCCCCCCc
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELCLFVPEDG--NFKCPNCQSLQPYGLP 257 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~Cl~~~~~~--~~~CP~Cr~~~~~~~~ 257 (458)
....|.+|.++...-+.- .|+|.|+..|+..|++. ...||.|+...+...+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 356799999999876655 59999999999999874 4599999998765433
No 150
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.20 E-value=0.044 Score=60.35 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=47.2
Q ss_pred hhhcCCCCCccccccccccCcEEccCC-ChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 12 DKEAFSDEFKCCVCLELLYKPVVLACG-HISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 12 ~~~~l~~~~~C~IC~~~l~~Pv~~~Cg-H~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
....+-++|.|||-++++.+||+++-| ++|-+..|.+|+.. ..+||.=|.++..
T Consensus 884 ~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 884 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL 938 (968)
T ss_dssp HHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred cccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc
Confidence 356778899999999999999999998 69999999999984 4579999988864
No 151
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.38 E-value=0.057 Score=42.03 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=39.8
Q ss_pred CCcccccccccCCCceEccc-CchhhHhhhhhccCCCCCCCCCccCCCCC
Q 043080 207 DDLSCAACKKMLFKPVVLNC-GHVFCELCLFVPEDGNFKCPNCQSLQPYG 255 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~C-gH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 255 (458)
.-+.|..|....+. ++.| -|-+|..|+...+..+..||+|..+++.+
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 46789999988875 4466 48899999999999999999999998765
No 152
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.58 E-value=0.4 Score=47.19 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=40.4
Q ss_pred cCCCCCccccccccccCcEE-ccCCChhh--HHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 15 AFSDEFKCCVCLELLYKPVV-LACGHISC--FWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 15 ~l~~~~~C~IC~~~l~~Pv~-~~CgH~FC--~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.+.-.+.|||-...+..|+. ..|.|.-| ..-+.......+...||+|.+.+.
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 34557899999999999999 78999955 444555555567888999988774
No 153
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.46 E-value=0.17 Score=37.97 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=30.1
Q ss_pred CCCCccccccccccCcEEccC----CChhhHHhHHHHHhcC
Q 043080 17 SDEFKCCVCLELLYKPVVLAC----GHISCFWCVYNAMNSW 53 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~C----gH~FC~~Ci~~~~~~~ 53 (458)
...+.|.+|.+-|.+--...| +|.||+-|-..+++..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 457889999999997655544 6999999999888754
No 154
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.25 E-value=0.73 Score=45.17 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.1
Q ss_pred CCCCCccccccccccCcEE-ccCCChhh--HHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 16 FSDEFKCCVCLELLYKPVV-LACGHISC--FWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 16 l~~~~~C~IC~~~l~~Pv~-~~CgH~FC--~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
+.-.+.||+-...+..|+. ..|.|.-| ..-+.......+...||+|.+.+.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3457889999999999999 78999944 445555555567789999998875
No 155
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=83.23 E-value=0.69 Score=34.97 Aligned_cols=36 Identities=25% Similarity=0.656 Sum_probs=25.6
Q ss_pred ccccCCCCCCCCCCcceeccCCccccCCCcchhhhcC-CCC
Q 043080 321 GVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNN-PAK 360 (458)
Q Consensus 321 ~v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~-~~~ 360 (458)
.+.||.|...+...+--.|+.|..++ |+.|... |..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~----C~~hl~~~H~~ 66 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSY----CDECLKATHPN 66 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEE----CHHHHHHHSCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchh----hhhhhHhhcCC
Confidence 38999998544223344699997544 9999997 744
No 156
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.07 E-value=0.43 Score=46.92 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=48.0
Q ss_pred CcccccccccCCCceEc-ccCchhhHhh--hhhc--cCCCCCCCCCccCCCCCCchhhHHHHHHHHHh
Q 043080 208 DLSCAACKKMLFKPVVL-NCGHVFCELC--LFVP--EDGNFKCPNCQSLQPYGLPSVCLIIEHFLEER 270 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l-~CgH~fC~~C--l~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~~ 270 (458)
.|.||+-...+..|+.- .|.|.-|-.- +... ......||+|.+.+....+.++..+..++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 58999999999999886 8999854432 1111 12678999999999888888888887777654
No 157
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.86 E-value=0.68 Score=45.37 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.3
Q ss_pred CCcccccccccCCCceEc-ccCchhhHhh--hhhcc--CCCCCCCCCccCCCCCCchhhHHHHHHHHH
Q 043080 207 DDLSCAACKKMLFKPVVL-NCGHVFCELC--LFVPE--DGNFKCPNCQSLQPYGLPSVCLIIEHFLEE 269 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l-~CgH~fC~~C--l~~~~--~~~~~CP~Cr~~~~~~~~~~~~~l~~l~~~ 269 (458)
-.|.||+-...+..|+.- .|.|.-|-.- +.... .....||+|.+.+....+.++..+..++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 357899999999999886 8999844332 11111 267899999999988788888887777654
No 158
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.40 E-value=1.2 Score=34.55 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=35.4
Q ss_pred CCCCccccccccccCcEEccC-CChhhHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVVLAC-GHISCFWCVYNAMNSWHESNCPVCRNPYNHF 68 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~~~C-gH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 68 (458)
-.-+.|..|...... .+.| -|.+|..|+...+. .+..||+|..++...
T Consensus 26 ~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCS--SSSEETTTTEECCCC
T ss_pred cCcccChhhccccCC--eeeecchhhHHHHHHHHHh--hccCCcccCCcCCcc
Confidence 345678888865553 3445 68999999988776 556899999988643
No 159
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.94 E-value=4 Score=31.32 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=35.8
Q ss_pred CCCcccccccccc-----CcEE--ccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLY-----KPVV--LACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~-----~Pv~--~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
..-.|.||.+-+- ++.+ -.|+-..|+.|+.. .+..++..||.|...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY-ErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY-ERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH-HHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH-HHhccCccccccCCccc
Confidence 3468999998753 2333 46898999999864 45457788999998885
No 160
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=63.44 E-value=2.8 Score=31.47 Aligned_cols=34 Identities=26% Similarity=0.576 Sum_probs=27.4
Q ss_pred CCcccccccccCCCceEccc----CchhhHhhhhhccC
Q 043080 207 DDLSCAACKKMLFKPVVLNC----GHVFCELCLFVPED 240 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l~C----gH~fC~~Cl~~~~~ 240 (458)
..|.|.+|.+.|.+.-.+.| +|.||-.|-...++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 56789999999998765555 69999999877654
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.61 E-value=1.2 Score=27.99 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=10.6
Q ss_pred CCcccccccccCCCce
Q 043080 207 DDLSCAACKKMLFKPV 222 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv 222 (458)
+.+.||+|+..|..+-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4567777777766653
No 162
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=59.29 E-value=8.5 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 327 CGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 327 C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
|...+.....++|.+|...| |..|...+ .|..|.+..+..
T Consensus 11 C~~H~~e~l~lfC~~d~~~i----C~~C~~~~----------~H~~H~~~~l~~ 50 (64)
T 2d8u_A 11 CKEHEDEKINIYCLTCEVPT----CSMCKVFG----------IHKACEVAPLQS 50 (64)
T ss_dssp CSSCTTCCCCSEESSSCCCC----CSHHHHSS----------STTSSCEECTTT
T ss_pred CcCcCCCccceEcCcCCcee----CccccCCC----------cCCCCCeeCHHH
Confidence 44443345678999997655 99998764 335677776554
No 163
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=56.35 E-value=13 Score=26.82 Aligned_cols=42 Identities=21% Similarity=0.558 Sum_probs=30.6
Q ss_pred CcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccC
Q 043080 208 DLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSL 251 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~ 251 (458)
.-.|.||.+- .-+++ .|...|+..|+...+. +...|+.|...
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4469999864 22344 7999999999975544 56789999764
No 164
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.36 E-value=13 Score=31.29 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHh---------cCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMN---------SWHESNCPVCRN 63 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~---------~~~~~~CP~Cr~ 63 (458)
.+..|.+|.+-=.--..-.|-.+||..||...+. ..+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567888876432111136889999999986542 346788999974
No 165
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.47 E-value=9.5 Score=25.74 Aligned_cols=41 Identities=32% Similarity=0.789 Sum_probs=27.4
Q ss_pred ccccccccCC-CceEc--ccCchhhHhhhhhccC----CCCCCCCCcc
Q 043080 210 SCAACKKMLF-KPVVL--NCGHVFCELCLFVPED----GNFKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~~-~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~ 250 (458)
.|.||...-. ..+++ .|...|+..|+..-+. +...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4778876532 22333 7888899999965433 4667999965
No 166
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.12 E-value=11 Score=26.76 Aligned_cols=39 Identities=33% Similarity=0.720 Sum_probs=29.2
Q ss_pred ccccccccCCCceEc---ccCchhhHhhhhhccCCCCCCCCC
Q 043080 210 SCAACKKMLFKPVVL---NCGHVFCELCLFVPEDGNFKCPNC 248 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~~~~~CP~C 248 (458)
.|-.|+..|...... .|++.||..|=.=.-.....||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 488888888655423 799999999965444567789988
No 167
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=50.06 E-value=13 Score=24.75 Aligned_cols=38 Identities=21% Similarity=0.618 Sum_probs=25.3
Q ss_pred CCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcC
Q 043080 327 CGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQ 379 (458)
Q Consensus 327 C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~ 379 (458)
|...+.....++|.+|...| |..|.... | ..|.+..+.
T Consensus 9 C~~H~~e~l~lfC~~~~~~i----C~~C~~~~----------H-~~H~~~~l~ 46 (50)
T 2yvr_A 9 CNVHKHEPLVLFCESCDTLT----CRDCQLNA----------H-KDHQYQFLE 46 (50)
T ss_dssp CSSSTTCBCCEEETTTTEEE----CHHHHHTT----------T-TTCCEEETT
T ss_pred CcCCCCCCEEEEeCCCCEEE----ecccCCCc----------C-CCCceecHH
Confidence 44333344678999998666 99998742 3 467776654
No 168
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=49.84 E-value=7.5 Score=28.69 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=33.1
Q ss_pred CCcccccccccCCC-ceEc--ccCchhhHhhhhhccC----CCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFK-PVVL--NCGHVFCELCLFVPED----GNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~-pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~~~ 253 (458)
+...|++|...... .+++ .|..-|+..|+..... ....||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45679999887654 3333 7888888899864433 4678999977553
No 169
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.55 E-value=14 Score=26.08 Aligned_cols=42 Identities=24% Similarity=0.755 Sum_probs=30.8
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~ 250 (458)
....|.+|... .-+++ .|...|+..|+...+. +...||.|..
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45679999874 33444 7888999999986432 5678999975
No 170
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=48.46 E-value=8.9 Score=29.43 Aligned_cols=46 Identities=24% Similarity=0.602 Sum_probs=33.3
Q ss_pred CcccccccccCC-----CceEc--ccCchhhHhhhhhc-cCCCCCCCCCccCCC
Q 043080 208 DLSCAACKKMLF-----KPVVL--NCGHVFCELCLFVP-EDGNFKCPNCQSLQP 253 (458)
Q Consensus 208 ~l~C~iC~~~~~-----~pv~l--~CgH~fC~~Cl~~~-~~~~~~CP~Cr~~~~ 253 (458)
.-.|.||.+-.- ++.+. .|+-..|+.|++-- ......||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999988633 23332 78888999999643 347889999998775
No 171
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.20 E-value=7.7 Score=30.84 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred cCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 043080 30 YKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFP 69 (458)
Q Consensus 30 ~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 69 (458)
+.|....||++|+ . .......||.|+..-...+
T Consensus 66 ~p~~C~~CG~~F~-----~--~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----A--EINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CCCBBTTTCCBCC-----C--CSSCCSSCSSSCCCCBCCC
T ss_pred ECcChhhCcCeec-----c--cCCCCCCCcCCCCCccCCc
Confidence 4455578999992 1 1123467999998765444
No 172
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=48.17 E-value=19 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=24.0
Q ss_pred CcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
...|+|.+|...| |..|.... .|..|.+..+..
T Consensus 17 ~l~lfC~~d~~~i----C~~C~~~~----------~H~~H~~~~l~e 49 (53)
T 2did_A 17 ALSLFCYEDQEAV----CLICAISH----------THRAHTVVPLSG 49 (53)
T ss_dssp BCCEEESSSCSEE----CHHHHTSS----------TTTTSCEEECCC
T ss_pred eeeEEeCCCCeEE----eccccCCC----------CCCCCcEeeHHH
Confidence 4578999997666 99998754 346777776654
No 173
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.97 E-value=10 Score=30.72 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCcccccccccCC---CceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 207 DDLSCAACKKMLF---KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 207 ~~l~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
+-+.|..|...|. ......=|..||..|..+.+.....|..|...+..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 5688999999996 34555678889999998877655589999998765
No 174
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=45.85 E-value=14 Score=28.35 Aligned_cols=32 Identities=34% Similarity=0.692 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|+.|+.. +.|..|+|..| +|+|=..|....
T Consensus 48 ~~C~~C~~~-~~~~~Y~C~~C----~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEE-GTIWSYHCDEC----DFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCC-CCSCEEECTTT----CCCCCHHHHHCS
T ss_pred eEeCCCCCc-CCCcEEEcCCC----CCeEcHHhcCCC
Confidence 689999965 56788999999 799999998764
No 175
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=45.75 E-value=20 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCCCCCCCCcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 326 YCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 326 ~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
.|...+.....++|.+|...| |..|.... .|..|.+..+..
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~i----C~~C~~~~----------~H~~H~~~~l~e 60 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLI----CALCKLVG----------RHRDHQVASLND 60 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEE----CHHHHHTS----------TTTTCCBCCCCS
T ss_pred cCcCcCCccccEEcCCCCceE----cccCcCCC----------CCCCCCccCHHH
Confidence 354433334678999997666 99998854 335676666543
No 176
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=45.65 E-value=12 Score=26.47 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=30.5
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccCC
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSLQ 252 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~~ 252 (458)
....|.+|... .-+++ .|...|+..|+...+. +...||.|....
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999863 22333 7888899999975433 567899997643
No 177
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=42.43 E-value=17 Score=26.28 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCCCccccccccccCcEE-ccCCChhhHHhHHHHHhc--CCCCCCCCCCCCCC
Q 043080 17 SDEFKCCVCLELLYKPVV-LACGHISCFWCVYNAMNS--WHESNCPVCRNPYN 66 (458)
Q Consensus 17 ~~~~~C~IC~~~l~~Pv~-~~CgH~FC~~Ci~~~~~~--~~~~~CP~Cr~~~~ 66 (458)
...-.|.||.+-- +-+. -.|...|+..|+...+.. .+...||.|.....
T Consensus 10 ~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3456699998642 3233 468999999999765543 24567999976543
No 178
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.36 E-value=32 Score=25.88 Aligned_cols=33 Identities=27% Similarity=0.757 Sum_probs=24.3
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..|.. ......+++|..|. .-+|..|....
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG----~v~C~~Cs~~~ 55 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCG----YVLCGDCSRHR 55 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTC----CEECTGGGCCE
T ss_pred CCCcCcCCccccchhcccccCCC----cEEChHHhCCe
Confidence 56888876 34556788999995 55599997653
No 179
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.98 E-value=3 Score=34.19 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=27.0
Q ss_pred CcccccccccCCCce----EcccCchhhHhhhhhccCCCCCCCCCcc
Q 043080 208 DLSCAACKKMLFKPV----VLNCGHVFCELCLFVPEDGNFKCPNCQS 250 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv----~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~ 250 (458)
...|..|...|.--. -..||.+||..|..........|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 356999998876321 1289999999998765544555666644
No 180
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.79 E-value=12 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.537 Sum_probs=18.6
Q ss_pred CceEcccCchhhHhhhhhccCCCCCCCCCccCC
Q 043080 220 KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQ 252 (458)
Q Consensus 220 ~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 252 (458)
.+.-..||+.| ...+.....||.|+..-
T Consensus 67 p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCee-----cccCCCCCCCcCCCCCc
Confidence 34445888888 12334568899998853
No 181
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.42 E-value=8.8 Score=31.58 Aligned_cols=31 Identities=32% Similarity=0.643 Sum_probs=22.5
Q ss_pred CcccccccccCCCceE----cccCchhhHhhhhhc
Q 043080 208 DLSCAACKKMLFKPVV----LNCGHVFCELCLFVP 238 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~----l~CgH~fC~~Cl~~~ 238 (458)
...|.+|...|.--.. -.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3469999988763211 289999999998654
No 182
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.01 E-value=6.2 Score=30.09 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred cccccccccc-----CcEEcc-CCChhhHHhHHHH
Q 043080 21 KCCVCLELLY-----KPVVLA-CGHISCFWCVYNA 49 (458)
Q Consensus 21 ~C~IC~~~l~-----~Pv~~~-CgH~FC~~Ci~~~ 49 (458)
-||-|...+. .+|..+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998887653 346665 9999999886554
No 183
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.76 E-value=16 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=29.3
Q ss_pred CCcccccccccCCCceEc---ccCchhhHhhhhhccC---CCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVVL---NCGHVFCELCLFVPED---GNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~---~~~~CP~Cr~ 250 (458)
+...| ||......-.++ .|..-|+..|+..... ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45678 898766544444 7777888888854332 4678999974
No 184
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=36.61 E-value=12 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.699 Sum_probs=24.8
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcch-hhhcCCCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCE-ACHNNPAK 360 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~-~C~~~~~~ 360 (458)
..|..|........+|+|..|...+ |. .|+..|..
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rY----CSl~C~k~Hk~ 47 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPY----CSLRCYRTHGT 47 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEE----SSHHHHHHHCC
T ss_pred CcCcCCCCCcCCCccccCcCCCCCc----cChHHHHHHhH
Confidence 6799997422223689999996444 98 69998743
No 185
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=35.32 E-value=28 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.8
Q ss_pred CcceeccCCccccCCCcchhhhcCC
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
...++|.++...| |..|....
T Consensus 12 ~l~lfC~~d~~~i----C~~C~~~~ 32 (42)
T 1fre_A 12 RLKLYCKDDGTLS----CVICRDSL 32 (42)
T ss_dssp SCCCCCCSSSSSS----CCTTSSCS
T ss_pred eeeEEeCCCCeEE----eccCCCCC
Confidence 3567899997555 99998753
No 186
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.61 E-value=8 Score=26.82 Aligned_cols=41 Identities=32% Similarity=0.792 Sum_probs=28.1
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCc
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQ 249 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr 249 (458)
.+..|.+|... ..+++ .|...|+..|+...+. ....||.|.
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45679999874 23333 7888899999875433 455677774
No 187
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=34.49 E-value=28 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.2
Q ss_pred cceeccCCccccCCCcchhhhcC
Q 043080 335 ERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 335 ~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
..++|.+|...| |..|...
T Consensus 17 l~lfC~~d~~~i----C~~C~~~ 35 (48)
T 3ddt_A 17 INIYCLTCEVPT----CSMCKVF 35 (48)
T ss_dssp CCEEETTTTEEE----CHHHHHH
T ss_pred ccEEcCCCCeeE----cccccCC
Confidence 568999998666 9999754
No 188
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.25 E-value=12 Score=26.78 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=32.4
Q ss_pred CCcccccccccCC---CceEc--ccCchhhHhhhhhcc-------CCCCCCCCCccCC
Q 043080 207 DDLSCAACKKMLF---KPVVL--NCGHVFCELCLFVPE-------DGNFKCPNCQSLQ 252 (458)
Q Consensus 207 ~~l~C~iC~~~~~---~pv~l--~CgH~fC~~Cl~~~~-------~~~~~CP~Cr~~~ 252 (458)
+...|.||..... ..+++ .|...|+..|+...+ .+...|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567999997643 34444 888899999987533 2567888886643
No 189
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=34.05 E-value=26 Score=26.59 Aligned_cols=43 Identities=23% Similarity=0.545 Sum_probs=29.5
Q ss_pred CCcccccccccCCCceEc---ccCchhhHhhhhhccC----------------CCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVVL---NCGHVFCELCLFVPED----------------GNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l---~CgH~fC~~Cl~~~~~----------------~~~~CP~Cr~ 250 (458)
.+-+|.||...-.. ..+ -|+.+|+..||.+... ....|+.|..
T Consensus 14 ~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45679999754332 233 5899999999988511 4568999943
No 190
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.53 E-value=11 Score=26.76 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCcccccccccCCCc-----eEcc---cCchhhHhhhhhccC
Q 043080 207 DDLSCAACKKMLFKP-----VVLN---CGHVFCELCLFVPED 240 (458)
Q Consensus 207 ~~l~C~iC~~~~~~p-----v~l~---CgH~fC~~Cl~~~~~ 240 (458)
..-.||-|...+... ++-. |++.||..|+..|..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 344688888877642 2223 888888888877654
No 191
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.27 E-value=23 Score=29.83 Aligned_cols=42 Identities=21% Similarity=0.565 Sum_probs=30.0
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhcc-----------CCCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPE-----------DGNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~-----------~~~~~CP~Cr~ 250 (458)
.+..|.+|.+-=. ++. .|-.+||..||...+ .....||.|+.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567999986432 222 899999999998543 25778999974
No 192
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.02 E-value=28 Score=25.45 Aligned_cols=32 Identities=19% Similarity=0.565 Sum_probs=23.2
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
..|..|+. ......+++|..|. .-+|..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG----~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCG----GVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC----CEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCC----EEEcccccCC
Confidence 46888886 34455688999995 4559999653
No 193
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=32.93 E-value=18 Score=26.84 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=18.8
Q ss_pred CcceeccCCccccCCCcchhhhcCC
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..-|+|.+|...-..-||..|+...
T Consensus 15 e~~Y~C~~C~~d~tc~lC~~CF~~~ 39 (75)
T 3ny3_A 15 EPTYSCRDCAVDPTCVLCMECFLGS 39 (75)
T ss_dssp CEEEEETTTBSSTTCCBCHHHHHTS
T ss_pred CEEEECccCCCCCCeeEChHHCCCC
Confidence 3468899997444456899999996
No 194
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.80 E-value=17 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCCCcccccccccCC---CceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLF---KPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~---~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
-.+-+.|..|...|. .+....=|..||..|..+.+.....|..|...+..
T Consensus 26 H~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 26 HEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp ETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 346789999999885 35566778889999998876544489999987754
No 195
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.36 E-value=21 Score=26.19 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=31.7
Q ss_pred CCCCcccccccccC---CCceEc--ccCchhhHhhhhhccC--CCCCCCCCcc
Q 043080 205 SVDDLSCAACKKML---FKPVVL--NCGHVFCELCLFVPED--GNFKCPNCQS 250 (458)
Q Consensus 205 ~~~~l~C~iC~~~~---~~pv~l--~CgH~fC~~Cl~~~~~--~~~~CP~Cr~ 250 (458)
......|.||...- .+.+++ .|.-.|...|+..... +...||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998763 344554 8888999999964332 5667888854
No 196
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.23 E-value=41 Score=24.50 Aligned_cols=46 Identities=22% Similarity=0.613 Sum_probs=30.6
Q ss_pred CCcccccccccCCCceEc--c--cC-chhhHhhhhhcc--CCCCCCCCCccCCC
Q 043080 207 DDLSCAACKKMLFKPVVL--N--CG-HVFCELCLFVPE--DGNFKCPNCQSLQP 253 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~--Cg-H~fC~~Cl~~~~--~~~~~CP~Cr~~~~ 253 (458)
+...| +|.+.....++. . |. .-|+..|+.-.. .....||.|+....
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 45678 899876554443 4 65 578888886222 25788999987543
No 197
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.74 E-value=11 Score=36.02 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=34.8
Q ss_pred CCCcccccccccCCCceEc----ccC--chhhHhhhhhccCCCCCCCCCccC
Q 043080 206 VDDLSCAACKKMLFKPVVL----NCG--HVFCELCLFVPEDGNFKCPNCQSL 251 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l----~Cg--H~fC~~Cl~~~~~~~~~CP~Cr~~ 251 (458)
...-.||||...-.-.++. .=| +.+|..|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567899999876655443 234 456999999998888999999885
No 198
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.44 E-value=22 Score=28.63 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=35.4
Q ss_pred CCcccccccccc---CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCCC
Q 043080 19 EFKCCVCLELLY---KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNH 67 (458)
Q Consensus 19 ~~~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 67 (458)
-|.|..|...|. ......=|..||..|..+.+.. .-.|..|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--CCccccCCCCcCc
Confidence 578999999986 3455667889999998876642 2269999988864
No 199
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=31.39 E-value=22 Score=31.04 Aligned_cols=43 Identities=26% Similarity=0.565 Sum_probs=29.9
Q ss_pred CcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccCC
Q 043080 208 DLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSLQ 252 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~~ 252 (458)
+-.|.+|..-= -+++ .|...|+..|+...+. +...||.|+...
T Consensus 4 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGG--ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCS--SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCC--eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45699998542 2333 7888899999865443 567899998743
No 200
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.81 E-value=19 Score=25.41 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=30.2
Q ss_pred CCCcccccccccCCC-ceEc---ccCchhhHhhhhhccC-----CCCCCCCCccC
Q 043080 206 VDDLSCAACKKMLFK-PVVL---NCGHVFCELCLFVPED-----GNFKCPNCQSL 251 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~-pv~l---~CgH~fC~~Cl~~~~~-----~~~~CP~Cr~~ 251 (458)
.+...|++|...+.. -..+ .|..=|+..|+.-... ..+.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 467789999988742 2233 6666677777743221 56889999764
No 201
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.76 E-value=16 Score=27.97 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCcccccccccCC---CceEc--ccCchhhHhhhhhccC--CCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLF---KPVVL--NCGHVFCELCLFVPED--GNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~---~pv~l--~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~~~ 254 (458)
.++..|.||...-. +.+++ .|.-.|...|+..... +...||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 45678999997642 23333 7888899999975432 56789999765443
No 202
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.60 E-value=20 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcchhhhcCCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPA 359 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~~C~~~~~ 359 (458)
..|-.|.. .+.++|..|. +..+|..|+.-.|
T Consensus 9 pWC~ICne----DAtlrC~gCd---gDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNE----DATLRCAGCD---GDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCS----CCCEEETTTT---SEEECSSHHHHHT
T ss_pred CeeEEeCC----CCeEEecCCC---CceehHHHHHHHc
Confidence 34666764 4568999997 6666999999865
No 203
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.40 E-value=24 Score=28.43 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=35.0
Q ss_pred CCCccccccccccC-cEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYK-PVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~-Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-|.|..|...|.. +....=|..||..|..+.+. ..|..|...+.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~----~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA----VVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC----CBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC----ccCcccCCcCC
Confidence 46899999998875 44566788999999876433 47999998876
No 204
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.35 E-value=32 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=23.7
Q ss_pred CcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcCC
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQP 380 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~~ 380 (458)
...++|.++...| |..|.... .|..|.+..+..
T Consensus 23 ~L~lfC~~d~~~i----C~~C~~s~----------eH~~H~~~~l~e 55 (59)
T 2yrg_A 23 KLLLFCQEDGKVI----CWLCERSQ----------EHRGHHTFPTSG 55 (59)
T ss_dssp BCCEEETTTCSEE----CHHHHTST----------TTTTCCEEECCS
T ss_pred eeeeecCCCCcEE----ecccCCCC----------cCCCCcEeeHHH
Confidence 3578999997666 99998754 346777776543
No 205
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.91 E-value=5.7 Score=31.02 Aligned_cols=40 Identities=28% Similarity=0.648 Sum_probs=28.3
Q ss_pred cccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
..||+|...+.. .=++.+|..|-..+ .....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchh-hccccCcchhhHHH
Confidence 789999987753 22444588887654 34567999998775
No 206
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.90 E-value=15 Score=25.74 Aligned_cols=42 Identities=31% Similarity=0.778 Sum_probs=28.8
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCcc
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQS 250 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~ 250 (458)
.+..|.+|... ..+++ .|...|+..|+...+. +...||.|..
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 35679999874 33333 7888999999975433 4566887754
No 207
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.69 E-value=5.2 Score=30.30 Aligned_cols=40 Identities=23% Similarity=0.544 Sum_probs=27.3
Q ss_pred cccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 209 LSCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 209 l~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
+.||.|...+..- =++.+|..|-..+.... .||.|+.++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 6799999876531 12445777876654444 8999998765
No 208
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.20 E-value=32 Score=27.60 Aligned_cols=47 Identities=17% Similarity=0.446 Sum_probs=37.0
Q ss_pred CCCcccccccccCCC-ceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFK-PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~-pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+-+.|..|...|.. +....=|..||..|..+.. ...|..|++.+..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCc
Confidence 456899999998875 4455678899999998754 4679999998764
No 209
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=28.99 E-value=18 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=11.2
Q ss_pred hhhHHhHHHHHhc
Q 043080 40 ISCFWCVYNAMNS 52 (458)
Q Consensus 40 ~FC~~Ci~~~~~~ 52 (458)
-||+.|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 210
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.88 E-value=18 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=11.2
Q ss_pred hhhHHhHHHHHhc
Q 043080 40 ISCFWCVYNAMNS 52 (458)
Q Consensus 40 ~FC~~Ci~~~~~~ 52 (458)
-||+.|+..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999873
No 211
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.82 E-value=2.5 Score=32.00 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=7.2
Q ss_pred cccCCCCCC
Q 043080 322 VGCDYCGMS 330 (458)
Q Consensus 322 v~Cd~C~~~ 330 (458)
+.|..|+..
T Consensus 38 I~CnDC~~~ 46 (79)
T 2k2d_A 38 ILCNDCNGR 46 (79)
T ss_dssp EEESSSCCE
T ss_pred EECCCCCCC
Confidence 789999853
No 212
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.30 E-value=36 Score=30.85 Aligned_cols=39 Identities=18% Similarity=0.538 Sum_probs=27.5
Q ss_pred CCccccccccCCCCC-CCCCCcceeccCCccccCCCcchhhhcC
Q 043080 315 GPKIHFGVGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 315 ~~~~h~~v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
.|.+.....|..|.. ......+++|..|. .-+|..|...
T Consensus 158 ~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG----~v~C~~Cs~~ 197 (226)
T 3zyq_A 158 APDWVDAEECHRCRVQFGVMTRKHHCRACG----QIFCGKCSSK 197 (226)
T ss_dssp CCCCCCCSBCTTTCCBCBTTBCCEECTTTC----CEECTTTCCE
T ss_pred ccccccCCCCcCcCCCCCccccccccCCCc----CEeChhhcCC
Confidence 344555578999986 34455678999995 5569999654
No 213
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.59 E-value=46 Score=25.49 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=31.6
Q ss_pred CCCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccC
Q 043080 206 VDDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSL 251 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~ 251 (458)
.....|.+|...- .+++ .|.-.|...|+...+. +...||.|...
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566799999753 2333 7888899999966543 56789999864
No 214
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.53 E-value=34 Score=28.25 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=30.4
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHH-----h----cCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAM-----N----SWHESNCPVCRN 63 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~-----~----~~~~~~CP~Cr~ 63 (458)
.+..|.+|.+--.-...-.|-..||..||...+ . ......|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345599987542211223688999999998642 1 346688999954
No 215
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.35 E-value=41 Score=30.22 Aligned_cols=39 Identities=21% Similarity=0.583 Sum_probs=27.6
Q ss_pred CCccccccccCCCCC-CCCCCcceeccCCccccCCCcchhhhcC
Q 043080 315 GPKIHFGVGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 315 ~~~~h~~v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
.+.+..+..|..|.. ......+++|..|. .-+|..|...
T Consensus 155 ~~~W~~~~~C~~C~~~F~~~~rrhhCr~CG----~v~C~~Cs~~ 194 (220)
T 1dvp_A 155 APNWADGRVCHRCRVEFTFTNRKHHCRNCG----QVFCGQCTAK 194 (220)
T ss_dssp CCCCCCCSBCTTTCCBCCSSSCCEECTTTC----CEECSTTSCE
T ss_pred cccCCCCCccCCCCCccCCcccccccCCcC----CEEChHHhCC
Confidence 344555578999976 34556788999995 5559999654
No 216
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.28 E-value=19 Score=25.80 Aligned_cols=44 Identities=25% Similarity=0.692 Sum_probs=30.5
Q ss_pred CCcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccCC
Q 043080 207 DDLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSLQ 252 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~~ 252 (458)
.+..|.||... .-+++ .|...|+..|+...+. +...||.|...-
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 56679999864 22333 7888899999975433 566799997643
No 217
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.99 E-value=15 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=32.6
Q ss_pred CCcccccccccCC---CceEc--ccCchhhHhhhhhccC--------CCCCCCCCccC
Q 043080 207 DDLSCAACKKMLF---KPVVL--NCGHVFCELCLFVPED--------GNFKCPNCQSL 251 (458)
Q Consensus 207 ~~l~C~iC~~~~~---~pv~l--~CgH~fC~~Cl~~~~~--------~~~~CP~Cr~~ 251 (458)
....|.||...-. +.+++ .|...|+..|+...+. +...|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 3567999998643 45565 8999999999976432 56788888653
No 218
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=26.85 E-value=14 Score=36.90 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=5.6
Q ss_pred CCCChhhHHHhc
Q 043080 379 QPTSLSDLINRI 390 (458)
Q Consensus 379 ~~~~~~~~~~~l 390 (458)
....+.+.+...
T Consensus 308 ~~~SFFnfFspp 319 (417)
T 2ayu_A 308 PIESFFNFFDPP 319 (417)
T ss_dssp ECCCGGGGGSCS
T ss_pred CCCCceeecCCC
Confidence 344555544443
No 219
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=26.61 E-value=26 Score=26.50 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=23.9
Q ss_pred CcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEc
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIM 378 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~ 378 (458)
..-|+|.+|...--.-||..|+... .| ..|.+...
T Consensus 19 e~~Y~C~~C~~d~tcvlC~~CF~~s---------~H-~gH~~~~~ 53 (82)
T 3nis_A 19 EPLYRCHECGCDDTCVLCIHCFNPK---------DH-VNHHVCTD 53 (82)
T ss_dssp CEEEEETTTBSSTTCCBCTTTCCGG---------GG-TTSCEEEE
T ss_pred CEEEEeeccCCCCCceEchhhCCCC---------Cc-CCceEEEE
Confidence 3568899997444456799998886 23 56766553
No 220
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.16 E-value=53 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.700 Sum_probs=23.8
Q ss_pred cccCCCCCC-CCCCcceeccCCccccCCCcchhhhcC
Q 043080 322 VGCDYCGMS-PIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 322 v~Cd~C~~~-~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
..|..|... .+...|.+|..|. .-+|..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG----~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCG----NSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSC----CEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCC----cEEChhhcCC
Confidence 568888763 4556788999995 5559999654
No 221
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.70 E-value=32 Score=24.97 Aligned_cols=41 Identities=24% Similarity=0.637 Sum_probs=27.1
Q ss_pred ccccccccCCC-ceEc--ccCchhhHhhhhhccC----C-CCCCCCCcc
Q 043080 210 SCAACKKMLFK-PVVL--NCGHVFCELCLFVPED----G-NFKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~~~-pv~l--~CgH~fC~~Cl~~~~~----~-~~~CP~Cr~ 250 (458)
.|.+|...-.. .+++ .|...|+..|+...+. + .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677754322 2333 7888999999985443 4 678999975
No 222
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.59 E-value=41 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=24.5
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..|.. ..+...+++|..|. .-+|..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG----~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCG----NIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTC----CEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCC----eEEChHHhCCc
Confidence 56888876 34556788999995 55599996653
No 223
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.59 E-value=23 Score=24.76 Aligned_cols=29 Identities=28% Similarity=0.756 Sum_probs=22.5
Q ss_pred cccCCCCCCCCCCcceeccCCccccCCCcch-hhhcCC
Q 043080 322 VGCDYCGMSPIIGERYKCKDCVESIGFDLCE-ACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~~i~g~~~~C~~C~~~i~~~lC~-~C~~~~ 358 (458)
..|..|+. ..+|+|..|...+ |. .|+..|
T Consensus 13 ~~C~vC~~----~~kY~CPrC~~~y----CSl~C~k~H 42 (56)
T 2yqq_A 13 VVCVICLE----KPKYRCPACRVPY----CSVVCFRKH 42 (56)
T ss_dssp CCCTTTCS----CCSEECTTTCCEE----SSHHHHHHH
T ss_pred CccCcCcC----CCeeeCCCCCCCe----eCHHHHHHH
Confidence 56899985 4689999996444 88 698886
No 224
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.22 E-value=14 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCCCcccccccccCCC---ceEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 205 SVDDLSCAACKKMLFK---PVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 205 ~~~~l~C~iC~~~~~~---pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
-.+-+.|..|...|.. +....=|..||..|..+.+.....|..|.+.+..
T Consensus 29 H~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 29 HSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 3467899999998874 5566678899999998776533379999987754
No 225
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.09 E-value=57 Score=24.81 Aligned_cols=32 Identities=25% Similarity=0.714 Sum_probs=23.8
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNN 357 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~ 357 (458)
..|..|.. ..+...+.+|..|. .-+|..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG----~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCG----RAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSC----CEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCC----CEEChhHcCC
Confidence 57888986 34556678899995 5559999655
No 226
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.81 E-value=21 Score=32.22 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=21.7
Q ss_pred CcccccccccCCCce---E-cccCchhhHhhhhh
Q 043080 208 DLSCAACKKMLFKPV---V-LNCGHVFCELCLFV 237 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv---~-l~CgH~fC~~Cl~~ 237 (458)
.-.|.+|...|.--. . -.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 457999998876211 1 27999999999764
No 227
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.70 E-value=31 Score=25.65 Aligned_cols=41 Identities=29% Similarity=0.682 Sum_probs=28.3
Q ss_pred ccccccccCC-CceEc--ccCchhhHhhhhhccC----C-CCCCCCCcc
Q 043080 210 SCAACKKMLF-KPVVL--NCGHVFCELCLFVPED----G-NFKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~~-~pv~l--~CgH~fC~~Cl~~~~~----~-~~~CP~Cr~ 250 (458)
.|.||...-. ..+++ .|...|+..|+...+. + .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888886433 33344 7888999999985443 3 568999864
No 228
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=23.51 E-value=40 Score=24.30 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred CcceeccCCccccCCCcchhhhcCCCCCCCCCCCCCCCCCcceEcC
Q 043080 334 GERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEIMQ 379 (458)
Q Consensus 334 g~~~~C~~C~~~i~~~lC~~C~~~~~~~~gr~~~~h~~~H~~~~~~ 379 (458)
...++|.+|...| |..|.. . .|..|.+..+.
T Consensus 27 ~l~lfC~~d~~~i----C~~C~~-~----------~H~~H~~~~l~ 57 (72)
T 2csv_A 27 TMELFCQTDQTCI----CYLCMF-Q----------EHKNHSTVTVE 57 (72)
T ss_dssp BCCEEESSSCCEE----CHHHHH-T----------TTSSSCEEEHH
T ss_pred ceEEEeCCCCeEE----ccccCC-C----------CCCCCCEecHH
Confidence 3578999997666 999987 3 33567776643
No 229
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.13 E-value=48 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.682 Sum_probs=29.6
Q ss_pred CCcccccccccCC-CceEc--ccCchhhHhhhhhccC----CCCCCCCCc
Q 043080 207 DDLSCAACKKMLF-KPVVL--NCGHVFCELCLFVPED----GNFKCPNCQ 249 (458)
Q Consensus 207 ~~l~C~iC~~~~~-~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr 249 (458)
.+..|.+|...-. ..++. .|+..|+..|+..... ....||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567999977543 23333 8899999999976543 456777775
No 230
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.12 E-value=33 Score=30.52 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=30.3
Q ss_pred CcccccccccCCCceEc--ccCchhhHhhhhhccC----CCCCCCCCccCC
Q 043080 208 DLSCAACKKMLFKPVVL--NCGHVFCELCLFVPED----GNFKCPNCQSLQ 252 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~~~ 252 (458)
+-.|.+|...= -+++ .|...|+..|+...+. +...||.|+...
T Consensus 7 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45699998542 1333 7888999999965443 567899998754
No 231
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.02 E-value=18 Score=27.07 Aligned_cols=20 Identities=30% Similarity=0.801 Sum_probs=15.5
Q ss_pred ccCchhhHhhhhhccCCCCCCC
Q 043080 225 NCGHVFCELCLFVPEDGNFKCP 246 (458)
Q Consensus 225 ~CgH~fC~~Cl~~~~~~~~~CP 246 (458)
.||+.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5899999999988754 4453
No 232
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=22.92 E-value=50 Score=25.16 Aligned_cols=47 Identities=21% Similarity=0.404 Sum_probs=35.5
Q ss_pred CCCcccccccccCCCc-eEcccCchhhHhhhhhccCCCCCCCCCccCCCC
Q 043080 206 VDDLSCAACKKMLFKP-VVLNCGHVFCELCLFVPEDGNFKCPNCQSLQPY 254 (458)
Q Consensus 206 ~~~l~C~iC~~~~~~p-v~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 254 (458)
.+=+.|..|...|... ....=|..||..|..+.+ ...|..|...+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED--SPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--CCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc--CCccccCCCcccc
Confidence 3568899999988653 445667889999987653 5689999887753
No 233
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.71 E-value=55 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCCccccccccccCcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-|.|..|...|.......=|..||..|..+.+. ..|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~----~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG----TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS----CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc----ccccccccccC
Confidence 5789999998887543445688899999877654 36999987765
No 234
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.22 E-value=32 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=21.5
Q ss_pred CCCcccccccccc--CcEEccCCChhhHH
Q 043080 18 DEFKCCVCLELLY--KPVVLACGHISCFW 44 (458)
Q Consensus 18 ~~~~C~IC~~~l~--~Pv~~~CgH~FC~~ 44 (458)
....|..|...+- .++...||.+||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3468999998654 48888899999974
No 235
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=22.08 E-value=63 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.609 Sum_probs=24.1
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..|.. ......+++|..|. ..+|..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG----~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACG----KVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTC----CEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCC----CEECCcccCCe
Confidence 56888875 34455678999995 55699996654
No 236
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.99 E-value=53 Score=28.06 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=30.5
Q ss_pred CCcccccccccCCCceEc----ccCchhhHhhhhhccC----------CCCCCCCCccC
Q 043080 207 DDLSCAACKKMLFKPVVL----NCGHVFCELCLFVPED----------GNFKCPNCQSL 251 (458)
Q Consensus 207 ~~l~C~iC~~~~~~pv~l----~CgH~fC~~Cl~~~~~----------~~~~CP~Cr~~ 251 (458)
.+..|.+|.+-- -+++ +|...||..||...+. ....|-+|...
T Consensus 78 ~~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 356799998632 2222 5888999999988765 45679999754
No 237
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.83 E-value=19 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=0.0
Q ss_pred CcccccccccCCCce----EcccCchhhHhhhhhc
Q 043080 208 DLSCAACKKMLFKPV----VLNCGHVFCELCLFVP 238 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv----~l~CgH~fC~~Cl~~~ 238 (458)
...|.+|...|.--. -..||++||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 457999998775211 1289999999998653
No 238
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.79 E-value=48 Score=24.76 Aligned_cols=33 Identities=24% Similarity=0.696 Sum_probs=24.2
Q ss_pred cccCCCCC-CCCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGM-SPIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~-~~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..|.. ..+...+.+|..|. .-+|..|....
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG----~v~C~~Cs~~~ 53 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCG----HIFCNTCSSNE 53 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTC----CEECSGGGCEE
T ss_pred CcccCcCCcccCccccccCCCCC----CEEChHHhCCe
Confidence 46888876 34455678999995 55599997654
No 239
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.15 E-value=28 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=21.7
Q ss_pred CcccccccccCCCce----EcccCchhhHhhhhh
Q 043080 208 DLSCAACKKMLFKPV----VLNCGHVFCELCLFV 237 (458)
Q Consensus 208 ~l~C~iC~~~~~~pv----~l~CgH~fC~~Cl~~ 237 (458)
.-.|.+|...|.--. -..||.+||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 347999998776221 128999999999764
No 240
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.94 E-value=38 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=35.7
Q ss_pred CCCcccccccccc---CcEEccCCChhhHHhHHHHHhcCCCCCCCCCCCCCC
Q 043080 18 DEFKCCVCLELLY---KPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYN 66 (458)
Q Consensus 18 ~~~~C~IC~~~l~---~Pv~~~CgH~FC~~Ci~~~~~~~~~~~CP~Cr~~~~ 66 (458)
.-|.|..|...|. .+....=|..||..|..+.+.. ...|..|...+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ--DGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC--CEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC--ccChhhcCCccC
Confidence 5789999999885 3556667889999998876541 126999988775
No 241
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=20.44 E-value=35 Score=25.38 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=26.0
Q ss_pred ccccccccCCCc-eEc--ccCchhhHhhhhhccC----CC-CCCCCCcc
Q 043080 210 SCAACKKMLFKP-VVL--NCGHVFCELCLFVPED----GN-FKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~~~p-v~l--~CgH~fC~~Cl~~~~~----~~-~~CP~Cr~ 250 (458)
.|.+|...-..- +++ .|...|+..|+...+. +. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543322 333 7888899999976543 33 68999864
No 242
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=20.43 E-value=47 Score=26.41 Aligned_cols=41 Identities=22% Similarity=0.598 Sum_probs=27.3
Q ss_pred ccccccccCCC--ceEc--ccCchhhHhhhhhccC----CCCCCCCCcc
Q 043080 210 SCAACKKMLFK--PVVL--NCGHVFCELCLFVPED----GNFKCPNCQS 250 (458)
Q Consensus 210 ~C~iC~~~~~~--pv~l--~CgH~fC~~Cl~~~~~----~~~~CP~Cr~ 250 (458)
.|.+|...-.+ .+++ .|...|+..|+...+. +...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 47777764322 2333 7888999999965443 4578999974
No 243
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=51 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.602 Sum_probs=19.8
Q ss_pred ccccccccCCCceEcccCchhhHhhhhhccCCCCCCCCCccCCC
Q 043080 210 SCAACKKMLFKPVVLNCGHVFCELCLFVPEDGNFKCPNCQSLQP 253 (458)
Q Consensus 210 ~C~iC~~~~~~pv~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 253 (458)
.|..|.+.+...++..-+..|+..|+ .|-.|+..+.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCccCCCEecceEEEECCccccccCC--------ccCCCCCCCC
Confidence 46666666655544455555555443 3666665554
No 244
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.02 E-value=51 Score=26.79 Aligned_cols=33 Identities=24% Similarity=0.715 Sum_probs=23.2
Q ss_pred cccCCCCCC-CCCCcceeccCCccccCCCcchhhhcCC
Q 043080 322 VGCDYCGMS-PIIGERYKCKDCVESIGFDLCEACHNNP 358 (458)
Q Consensus 322 v~Cd~C~~~-~i~g~~~~C~~C~~~i~~~lC~~C~~~~ 358 (458)
..|..|+.. .....+.+|..|. .-+|..|-...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG----~ifC~~Cs~~~ 53 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCK----KNFCMTCSSQV 53 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTC----CEECGGGEEC-
T ss_pred CcccCcCCccccccccccCCCCC----CeeCHHHhCCC
Confidence 578888763 3445678899994 55599997664
Done!