Query 043082
Match_columns 179
No_of_seqs 145 out of 1096
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02640 glucose-6-phosphate 1 100.0 1.1E-34 2.4E-39 272.4 12.4 143 17-179 28-170 (573)
2 PF00479 G6PD_N: Glucose-6-pho 99.9 4.3E-26 9.4E-31 187.3 6.1 78 101-179 1-78 (183)
3 PLN02333 glucose-6-phosphate 1 99.9 1.1E-23 2.4E-28 199.3 12.6 86 94-179 114-199 (604)
4 COG0364 Zwf Glucose-6-phosphat 99.9 8.3E-24 1.8E-28 195.5 9.8 85 94-179 4-88 (483)
5 PRK05722 glucose-6-phosphate 1 99.9 1.8E-23 4E-28 194.2 10.6 87 92-179 4-90 (495)
6 PRK12854 glucose-6-phosphate 1 99.9 2.6E-23 5.6E-28 192.9 10.4 84 95-179 9-92 (484)
7 PRK12853 glucose-6-phosphate 1 99.9 3E-23 6.5E-28 192.3 10.5 84 95-179 6-89 (482)
8 TIGR00871 zwf glucose-6-phosph 99.9 7.4E-23 1.6E-27 189.6 9.5 82 96-179 1-82 (482)
9 PLN02539 glucose-6-phosphate 1 99.9 1E-22 2.2E-27 189.2 10.3 85 92-179 12-97 (491)
10 PTZ00309 glucose-6-phosphate 1 99.9 1.5E-21 3.2E-26 183.2 10.1 81 95-179 52-134 (542)
11 KOG0563 Glucose-6-phosphate 1- 99.8 1.4E-21 3.1E-26 180.2 7.9 86 93-179 13-98 (499)
12 PF13460 NAD_binding_10: NADH( 86.3 1.7 3.8E-05 33.5 5.1 37 100-145 1-37 (183)
13 PF05368 NmrA: NmrA-like famil 85.0 5.2 0.00011 32.4 7.5 32 100-140 1-32 (233)
14 PF13905 Thioredoxin_8: Thiore 83.8 5.2 0.00011 27.8 6.2 55 98-153 3-57 (95)
15 cd03011 TlpA_like_ScsD_MtbDsbE 82.5 4.3 9.3E-05 29.4 5.5 50 97-152 21-70 (123)
16 COG3311 AlpA Predicted transcr 62.9 14 0.00029 26.8 3.9 41 114-155 26-66 (70)
17 PLN00141 Tic62-NAD(P)-related 61.8 7.9 0.00017 31.9 2.9 37 95-140 15-51 (251)
18 PRK12828 short chain dehydroge 59.3 20 0.00044 28.2 4.7 41 98-147 8-48 (239)
19 TIGR00715 precor6x_red precorr 58.9 13 0.00028 32.3 3.8 39 99-147 2-40 (256)
20 PRK05653 fabG 3-ketoacyl-(acyl 56.8 12 0.00026 29.5 3.0 44 98-150 6-49 (246)
21 cd02966 TlpA_like_family TlpA- 55.9 60 0.0013 21.8 7.0 55 97-152 20-74 (116)
22 PRK07326 short chain dehydroge 55.4 10 0.00022 30.2 2.4 44 98-150 7-50 (237)
23 PRK07523 gluconate 5-dehydroge 53.8 17 0.00037 29.5 3.5 45 98-151 11-55 (255)
24 PRK07454 short chain dehydroge 53.0 17 0.00036 29.2 3.3 44 98-150 7-50 (241)
25 PRK08703 short chain dehydroge 51.6 23 0.0005 28.4 3.9 44 98-150 7-50 (239)
26 TIGR01764 excise DNA binding d 51.0 18 0.00038 21.9 2.5 33 116-151 16-48 (49)
27 PF02670 DXP_reductoisom: 1-de 50.6 69 0.0015 25.4 6.4 46 100-153 1-46 (129)
28 PRK12429 3-hydroxybutyrate deh 50.6 18 0.00038 29.0 3.1 44 98-150 5-48 (258)
29 PRK13394 3-hydroxybutyrate deh 50.1 62 0.0013 26.0 6.2 45 98-151 8-52 (262)
30 TIGR01963 PHB_DH 3-hydroxybuty 49.3 15 0.00032 29.4 2.5 42 99-149 3-44 (255)
31 cd03009 TryX_like_TryX_NRX Try 48.7 60 0.0013 23.9 5.5 54 97-151 19-73 (131)
32 PRK07074 short chain dehydroge 48.3 17 0.00037 29.5 2.7 43 99-150 4-46 (257)
33 cd03012 TlpA_like_DipZ_like Tl 48.0 64 0.0014 23.7 5.6 44 97-141 24-67 (126)
34 cd02969 PRX_like1 Peroxiredoxi 47.1 90 0.0019 24.2 6.6 55 97-152 26-86 (171)
35 PRK10538 malonic semialdehyde 46.1 24 0.00052 28.6 3.2 33 99-140 2-34 (248)
36 cd02964 TryX_like_family Trypa 45.0 84 0.0018 23.4 5.9 55 97-152 18-73 (132)
37 PRK06057 short chain dehydroge 44.8 49 0.0011 26.8 4.9 42 97-147 7-48 (255)
38 PRK07231 fabG 3-ketoacyl-(acyl 43.4 24 0.00052 28.1 2.8 43 98-149 6-48 (251)
39 PRK07774 short chain dehydroge 42.9 27 0.00059 27.9 3.1 45 98-151 7-51 (250)
40 PRK07478 short chain dehydroge 41.2 62 0.0013 26.2 5.0 45 98-151 7-51 (254)
41 PRK06124 gluconate 5-dehydroge 40.3 92 0.002 25.1 5.8 35 97-140 11-45 (256)
42 PRK09291 short chain dehydroge 40.3 61 0.0013 26.0 4.8 42 99-149 4-45 (257)
43 PRK07914 hypothetical protein; 40.2 1.4E+02 0.003 26.1 7.3 69 96-175 92-160 (320)
44 PRK08945 putative oxoacyl-(acy 40.1 59 0.0013 26.2 4.7 45 97-150 12-56 (247)
45 TIGR03649 ergot_EASG ergot alk 40.0 33 0.00071 28.5 3.2 33 99-140 1-33 (285)
46 PLN02986 cinnamyl-alcohol dehy 39.4 1.2E+02 0.0025 25.7 6.5 41 98-147 6-46 (322)
47 cd02968 SCO SCO (an acronym fo 38.6 1.3E+02 0.0029 22.0 6.0 56 97-152 23-83 (142)
48 cd03010 TlpA_like_DsbE TlpA-li 38.6 1.5E+02 0.0033 21.5 6.6 50 98-152 27-76 (127)
49 cd03008 TryX_like_RdCVF Trypar 37.9 1.4E+02 0.003 23.8 6.4 55 97-152 26-86 (146)
50 PRK06914 short chain dehydroge 37.7 38 0.00083 27.8 3.3 42 99-149 5-46 (280)
51 PRK07062 short chain dehydroge 37.7 62 0.0013 26.3 4.5 45 98-151 9-53 (265)
52 TIGR03466 HpnA hopanoid-associ 35.7 44 0.00094 27.8 3.3 34 99-141 2-35 (328)
53 PRK08265 short chain dehydroge 35.6 1.1E+02 0.0024 25.0 5.7 35 98-141 7-41 (261)
54 PF00106 adh_short: short chai 35.0 1.9E+02 0.0041 21.5 6.6 46 99-154 2-47 (167)
55 PRK07067 sorbitol dehydrogenas 34.9 36 0.00079 27.6 2.7 40 98-146 7-46 (257)
56 PRK08177 short chain dehydroge 34.3 60 0.0013 25.8 3.8 39 99-146 3-41 (225)
57 PRK05875 short chain dehydroge 33.9 39 0.00085 27.7 2.7 40 98-146 8-47 (276)
58 PRK12384 sorbitol-6-phosphate 33.7 1.2E+02 0.0025 24.5 5.5 44 99-151 4-47 (259)
59 PRK05565 fabG 3-ketoacyl-(acyl 33.4 1.1E+02 0.0023 24.2 5.1 44 98-150 6-50 (247)
60 TIGR03206 benzo_BadH 2-hydroxy 33.2 97 0.0021 24.7 4.9 44 98-150 4-47 (250)
61 PRK07666 fabG 3-ketoacyl-(acyl 32.9 64 0.0014 25.7 3.8 44 97-149 7-50 (239)
62 PRK09186 flagellin modificatio 32.7 59 0.0013 26.1 3.5 45 98-151 5-49 (256)
63 PRK06172 short chain dehydroge 32.5 1.5E+02 0.0033 23.8 5.9 44 97-149 7-50 (253)
64 PLN02896 cinnamyl-alcohol dehy 32.4 82 0.0018 27.2 4.6 42 95-145 8-49 (353)
65 PRK07060 short chain dehydroge 31.8 94 0.002 24.7 4.5 34 98-140 10-43 (245)
66 PRK08213 gluconate 5-dehydroge 31.8 41 0.00089 27.3 2.5 43 98-149 13-55 (259)
67 PF11313 DUF3116: Protein of u 31.7 20 0.00044 26.8 0.6 30 99-128 29-58 (85)
68 cd01078 NAD_bind_H4MPT_DH NADP 31.7 1.1E+02 0.0024 24.3 5.0 45 97-150 28-72 (194)
69 PRK07102 short chain dehydroge 31.6 1.1E+02 0.0023 24.6 4.8 42 99-149 3-44 (243)
70 PRK08263 short chain dehydroge 31.2 41 0.00089 27.8 2.4 35 99-142 5-39 (275)
71 TIGR01777 yfcH conserved hypot 31.2 28 0.0006 28.5 1.4 35 100-143 1-35 (292)
72 PRK07677 short chain dehydroge 30.9 54 0.0012 26.5 3.0 43 99-150 3-45 (252)
73 PRK08643 acetoin reductase; Va 30.7 1.3E+02 0.0028 24.2 5.3 43 99-150 4-46 (256)
74 PRK06125 short chain dehydroge 30.7 1.1E+02 0.0025 24.7 5.0 45 98-151 8-52 (259)
75 cd00340 GSH_Peroxidase Glutath 30.6 2.3E+02 0.0049 21.7 6.4 54 97-152 23-82 (152)
76 PRK07814 short chain dehydroge 30.3 49 0.0011 27.1 2.7 43 98-149 11-53 (263)
77 PRK07890 short chain dehydroge 30.3 50 0.0011 26.6 2.7 44 98-150 6-49 (258)
78 PLN03209 translocon at the inn 30.1 43 0.00094 32.8 2.7 42 98-148 81-122 (576)
79 PRK05993 short chain dehydroge 30.0 44 0.00096 27.7 2.5 33 99-140 6-38 (277)
80 PRK06949 short chain dehydroge 30.0 52 0.0011 26.5 2.8 35 97-140 9-43 (258)
81 PRK08219 short chain dehydroge 28.7 63 0.0014 25.3 3.0 33 98-140 4-36 (227)
82 PRK03147 thiol-disulfide oxido 28.6 2.5E+02 0.0054 21.3 6.3 53 97-151 62-114 (173)
83 PRK06181 short chain dehydroge 28.5 58 0.0012 26.4 2.8 38 99-145 3-40 (263)
84 cd02970 PRX_like2 Peroxiredoxi 28.1 2.4E+02 0.0052 20.6 6.1 44 96-140 24-67 (149)
85 CHL00194 ycf39 Ycf39; Provisio 28.0 43 0.00093 28.6 2.1 33 99-140 2-34 (317)
86 PRK06138 short chain dehydroge 27.9 57 0.0012 26.0 2.7 39 98-145 6-44 (252)
87 PRK08226 short chain dehydroge 27.8 2.3E+02 0.0049 22.9 6.2 35 97-140 6-40 (263)
88 PRK05650 short chain dehydroge 27.8 63 0.0014 26.5 3.0 41 99-148 2-42 (270)
89 PTZ00056 glutathione peroxidas 27.7 2E+02 0.0044 23.6 5.9 55 97-152 40-100 (199)
90 PF05930 Phage_AlpA: Prophage 27.6 11 0.00023 24.6 -1.3 33 116-149 18-50 (51)
91 PRK06180 short chain dehydroge 27.5 58 0.0013 27.0 2.8 34 98-140 5-38 (277)
92 PRK08017 oxidoreductase; Provi 27.5 59 0.0013 26.1 2.7 33 99-140 4-36 (256)
93 PRK06196 oxidoreductase; Provi 27.4 87 0.0019 26.7 3.8 42 98-148 27-68 (315)
94 PRK09437 bcp thioredoxin-depen 27.3 2.2E+02 0.0048 21.5 5.7 52 98-152 32-84 (154)
95 PRK12829 short chain dehydroge 27.1 63 0.0014 26.0 2.8 42 97-147 11-52 (264)
96 PRK07035 short chain dehydroge 27.0 64 0.0014 26.0 2.8 44 98-150 9-52 (252)
97 KOG2733 Uncharacterized membra 27.0 1.9E+02 0.004 27.6 6.1 75 97-176 5-85 (423)
98 PRK09242 tropinone reductase; 26.8 63 0.0014 26.2 2.8 44 98-150 10-53 (257)
99 PRK07775 short chain dehydroge 26.6 61 0.0013 26.9 2.7 40 98-146 11-50 (274)
100 cd02967 mauD Methylamine utili 26.6 2.3E+02 0.005 19.9 6.6 52 97-152 22-73 (114)
101 PRK12939 short chain dehydroge 26.5 83 0.0018 25.0 3.4 44 97-149 7-50 (250)
102 PF06144 DNA_pol3_delta: DNA p 26.4 1.8E+02 0.0039 22.2 5.1 67 96-175 90-156 (172)
103 PF13241 NAD_binding_7: Putati 26.2 46 0.00099 24.3 1.7 33 98-140 8-40 (103)
104 PRK12826 3-ketoacyl-(acyl-carr 25.6 76 0.0016 25.1 3.0 35 98-141 7-41 (251)
105 PLN02662 cinnamyl-alcohol dehy 25.6 2.8E+02 0.006 23.2 6.5 36 98-142 5-40 (322)
106 PRK07069 short chain dehydroge 25.5 82 0.0018 25.1 3.2 32 100-140 2-33 (251)
107 cd03018 PRX_AhpE_like Peroxire 25.5 2.5E+02 0.0054 20.7 5.7 53 96-151 29-81 (149)
108 PRK12936 3-ketoacyl-(acyl-carr 25.4 2.2E+02 0.0049 22.4 5.7 34 98-140 7-40 (245)
109 COG0008 GlnS Glutamyl- and glu 25.4 16 0.00034 34.9 -1.1 56 98-154 240-297 (472)
110 TIGR01832 kduD 2-deoxy-D-gluco 25.4 1E+02 0.0022 24.7 3.7 34 98-140 6-39 (248)
111 PRK09135 pteridine reductase; 24.9 1.2E+02 0.0025 24.0 3.9 35 98-141 7-41 (249)
112 TIGR03589 PseB UDP-N-acetylglu 24.9 2.2E+02 0.0047 24.6 5.9 38 99-143 6-43 (324)
113 PRK07825 short chain dehydroge 24.8 72 0.0016 26.1 2.8 34 98-140 6-39 (273)
114 TIGR02415 23BDH acetoin reduct 24.7 75 0.0016 25.4 2.8 33 99-140 2-34 (254)
115 PRK08217 fabG 3-ketoacyl-(acyl 24.5 76 0.0016 25.2 2.8 44 98-150 6-49 (253)
116 PRK08251 short chain dehydroge 24.1 80 0.0017 25.3 2.9 44 99-151 4-47 (248)
117 PF04230 PS_pyruv_trans: Polys 24.0 1.6E+02 0.0035 23.0 4.5 28 129-156 100-127 (286)
118 PF04321 RmlD_sub_bind: RmlD s 23.9 2.8E+02 0.006 23.7 6.3 45 99-152 2-49 (286)
119 PRK05866 short chain dehydroge 23.8 1.2E+02 0.0026 25.8 4.0 34 98-140 41-74 (293)
120 TIGR02661 MauD methylamine deh 23.7 3E+02 0.0066 22.1 6.2 49 98-152 76-124 (189)
121 TIGR01746 Thioester-redct thio 23.7 2.7E+02 0.0059 23.2 6.1 36 99-141 1-36 (367)
122 COG0702 Predicted nucleoside-d 23.6 92 0.002 25.0 3.2 40 99-147 2-41 (275)
123 COG0743 Dxr 1-deoxy-D-xylulose 23.5 2.2E+02 0.0048 26.9 5.9 47 99-153 3-49 (385)
124 PRK07832 short chain dehydroge 23.4 88 0.0019 25.8 3.1 42 99-149 2-43 (272)
125 COG0451 WcaG Nucleoside-diphos 23.4 1.3E+02 0.0028 24.7 4.1 34 100-142 3-36 (314)
126 TIGR01500 sepiapter_red sepiap 23.0 1.8E+02 0.004 23.6 4.9 47 99-150 2-48 (256)
127 PF05741 zf-nanos: Nanos RNA b 22.9 19 0.00041 25.0 -0.9 13 100-112 36-48 (55)
128 TIGR00385 dsbE periplasmic pro 22.9 3.7E+02 0.0081 21.0 7.2 50 96-151 63-112 (173)
129 PRK08862 short chain dehydroge 22.9 88 0.0019 25.6 2.9 44 98-150 6-49 (227)
130 TIGR01830 3oxo_ACP_reduc 3-oxo 22.6 93 0.002 24.4 3.0 32 100-140 1-32 (239)
131 PF08671 SinI: Anti-repressor 22.5 1.5E+02 0.0033 18.0 3.2 27 143-174 2-28 (30)
132 PRK09072 short chain dehydroge 22.4 1.7E+02 0.0037 23.8 4.6 40 98-146 6-45 (263)
133 PRK06841 short chain dehydroge 22.3 2.6E+02 0.0056 22.4 5.5 34 98-140 16-49 (255)
134 PRK05786 fabG 3-ketoacyl-(acyl 22.3 88 0.0019 24.8 2.8 39 98-145 6-44 (238)
135 PRK08085 gluconate 5-dehydroge 22.0 93 0.002 25.1 2.9 35 98-141 10-44 (254)
136 cd06270 PBP1_GalS_like Ligand 22.0 1.5E+02 0.0032 23.8 4.1 37 101-141 180-217 (268)
137 PRK06182 short chain dehydroge 21.9 64 0.0014 26.5 2.0 34 98-140 4-37 (273)
138 PRK06101 short chain dehydroge 21.5 80 0.0017 25.5 2.4 33 99-140 3-35 (240)
139 PRK05629 hypothetical protein; 21.5 4.5E+02 0.0097 22.8 7.2 65 97-175 94-158 (318)
140 PRK08267 short chain dehydroge 21.4 78 0.0017 25.7 2.4 39 99-146 3-41 (260)
141 PRK10675 UDP-galactose-4-epime 21.3 1.3E+02 0.0027 25.5 3.7 32 99-139 2-33 (338)
142 KOG1384 tRNA delta(2)-isopente 21.3 41 0.00089 31.2 0.7 19 97-117 7-33 (348)
143 PRK07063 short chain dehydroge 21.3 1.2E+02 0.0027 24.5 3.5 46 97-151 7-52 (260)
144 PRK12824 acetoacetyl-CoA reduc 21.0 2E+02 0.0043 22.7 4.6 33 99-140 4-36 (245)
145 PF13289 SIR2_2: SIR2-like dom 21.0 1.7E+02 0.0038 21.4 4.0 38 115-155 73-110 (143)
146 PRK07097 gluconate 5-dehydroge 20.9 1.1E+02 0.0023 25.1 3.1 44 98-150 11-54 (265)
147 PRK07904 short chain dehydroge 20.8 1.9E+02 0.0041 23.8 4.5 47 97-151 8-55 (253)
148 PRK08277 D-mannonate oxidoredu 20.6 2.3E+02 0.005 23.2 5.0 35 97-140 10-44 (278)
149 COG3596 Predicted GTPase [Gene 20.5 1E+02 0.0022 28.0 3.1 25 94-119 36-60 (296)
150 TIGR03325 BphB_TodD cis-2,3-di 20.5 89 0.0019 25.5 2.5 34 98-140 6-39 (262)
151 PRK05717 oxidoreductase; Valid 20.5 2.2E+02 0.0047 23.0 4.8 34 98-140 11-44 (255)
152 PRK06200 2,3-dihydroxy-2,3-dih 20.4 94 0.002 25.3 2.7 34 98-140 7-40 (263)
153 PRK06482 short chain dehydroge 20.4 82 0.0018 25.9 2.3 33 99-140 4-36 (276)
154 COG1091 RfbD dTDP-4-dehydrorha 20.4 2.1E+02 0.0046 25.6 5.0 44 100-153 3-49 (281)
155 cd04762 HTH_MerR-trunc Helix-T 20.4 1.3E+02 0.0028 17.7 2.7 33 116-150 15-47 (49)
156 PRK05447 1-deoxy-D-xylulose 5- 20.3 2.8E+02 0.0062 25.9 6.0 46 99-152 3-48 (385)
157 PF09861 DUF2088: Domain of un 20.3 3.3E+02 0.0072 22.9 5.9 57 98-154 57-116 (204)
158 PF07993 NAD_binding_4: Male s 20.3 2.5E+02 0.0055 23.1 5.2 46 102-155 1-46 (249)
159 PRK07109 short chain dehydroge 20.1 1.2E+02 0.0026 26.4 3.4 44 98-150 9-52 (334)
No 1
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=100.00 E-value=1.1e-34 Score=272.38 Aligned_cols=143 Identities=80% Similarity=1.194 Sum_probs=125.9
Q ss_pred hhccceeeccccchhhhhhhhhhccccccceeeeccCCCCCceeecccchhhhccCCCCCCCCchhhhcCCCCCCCCCCC
Q 043082 17 LFSDFIVVPRKYFFSAWVSQVQSRIHARKHFQLKSSNGHPLNAVSLQDSEILLENLWPNDHSEPQEIEASVPASSEKSGS 96 (179)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (179)
|+|+-+..|+++ ..|++.+|++|+||||+++++||+|+|++++||| ++.+.+++. .+.+.
T Consensus 28 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~ 87 (573)
T PLN02640 28 LFSRSITFPRKS---TFVSQIHSRIHARKHFQLKSSNGHPLNAVSLQDG----ENHLTEEHA-------------EKGES 87 (573)
T ss_pred chhccccccccc---hHHHHHHHHHhhhhheeeccCCCCcccceecccc----cccccHhhc-------------cCCCC
Confidence 788889999998 7789999999999999999999999999999999 234433322 34466
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcCc
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRCF 176 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl~ 176 (179)
+|+|||||||||||+||||||||+|++.|+||++++|||+||+++++++||++|+++++++.+..+.+++.|++|+++++
T Consensus 88 ~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~ 167 (573)
T PLN02640 88 TLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISSTLTCRIDQRENCGDKMDQFLKRCF 167 (573)
T ss_pred CeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhcCE
Confidence 89999999999999999999999999999999999999999999999999999999999875322346778999999999
Q ss_pred ccC
Q 043082 177 YHS 179 (179)
Q Consensus 177 Yv~ 179 (179)
|++
T Consensus 168 Y~~ 170 (573)
T PLN02640 168 YHS 170 (573)
T ss_pred EEe
Confidence 974
No 2
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=99.92 E-value=4.3e-26 Score=187.31 Aligned_cols=78 Identities=44% Similarity=0.758 Sum_probs=69.6
Q ss_pred EEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcCcccC
Q 043082 101 TVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRCFYHS 179 (179)
Q Consensus 101 VIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl~Yv~ 179 (179)
||||||||||+||||||||+|+++|+||++++|||+||++||+++|+++|+++++++.. ...+++.|++|+++|+|++
T Consensus 1 VifGatGDLA~RKL~PaL~~L~~~g~lp~~~~Iig~~R~~~~~~~f~~~v~~~l~~~~~-~~~~~~~~~~F~~~~~Y~~ 78 (183)
T PF00479_consen 1 VIFGATGDLAKRKLLPALYNLYRDGLLPEDFRIIGVARSDLSDEEFREKVREALKKFSR-EEIDEEKWEEFLSRLHYVQ 78 (183)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHTTSS-SSEEEEEEESS--SHHCCHHHHHHCCGG-S--CCCSHHHHHHHHTTEEEEE
T ss_pred CEeccccHHHHhHHHHHHHHHHHhCCCCCCcEEEEecCCcCCHHHHHHHHHHHHHhhhc-cccCHHHHHHHhhccEEEe
Confidence 89999999999999999999999999999999999999999999999999999998433 4678999999999999974
No 3
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=99.90 E-value=1.1e-23 Score=199.28 Aligned_cols=86 Identities=80% Similarity=1.319 Sum_probs=78.6
Q ss_pred CCCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHh
Q 043082 94 SGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLK 173 (179)
Q Consensus 94 ~~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~ 173 (179)
...+++|||||||||||+||||||||+|+++|+||++|+|||+||+++++|+||++|+++|+++.+..+.++++|++|++
T Consensus 114 ~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs~~t~eefr~~v~~~l~~~~~~~~~~~~~~~~F~~ 193 (604)
T PLN02333 114 DESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCGEKMEEFLK 193 (604)
T ss_pred CCCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999875423456789999999
Q ss_pred cCcccC
Q 043082 174 RCFYHS 179 (179)
Q Consensus 174 rl~Yv~ 179 (179)
+++|++
T Consensus 194 ~~~Y~~ 199 (604)
T PLN02333 194 RCFYHS 199 (604)
T ss_pred cCEEEe
Confidence 999974
No 4
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=8.3e-24 Score=195.54 Aligned_cols=85 Identities=38% Similarity=0.667 Sum_probs=78.7
Q ss_pred CCCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHh
Q 043082 94 SGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLK 173 (179)
Q Consensus 94 ~~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~ 173 (179)
...+|.|||||||||||+||||||||+|+++|+||+.|+|||+||++|++|+|++.+++++ .+....+.+++.|++|++
T Consensus 4 ~~~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i-~~~~~~~~~~~~~~~F~~ 82 (483)
T COG0364 4 TVEPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAI-EFAKTEEIDEAVWEEFAS 82 (483)
T ss_pred ccCcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHh-hhcccccccHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999999999 655444678999999999
Q ss_pred cCcccC
Q 043082 174 RCFYHS 179 (179)
Q Consensus 174 rl~Yv~ 179 (179)
|++|++
T Consensus 83 ~~~Y~~ 88 (483)
T COG0364 83 RLSYVS 88 (483)
T ss_pred ceEEEe
Confidence 999985
No 5
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=99.89 E-value=1.8e-23 Score=194.17 Aligned_cols=87 Identities=36% Similarity=0.671 Sum_probs=79.2
Q ss_pred CCCCCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHH
Q 043082 92 EKSGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQF 171 (179)
Q Consensus 92 ~~~~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~F 171 (179)
+....+|+|||||||||||+||||||||+|++.|+||++++|||+||+++++++||++|+++++++.. ...+++.|++|
T Consensus 4 ~~~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~-~~~~~~~~~~F 82 (495)
T PRK05722 4 PRTAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFAR-TPFDEEVWERF 82 (495)
T ss_pred CCCCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc-CccCHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999998753 23478899999
Q ss_pred HhcCcccC
Q 043082 172 LKRCFYHS 179 (179)
Q Consensus 172 l~rl~Yv~ 179 (179)
+++++|++
T Consensus 83 ~~~~~Y~~ 90 (495)
T PRK05722 83 LSRLYYVS 90 (495)
T ss_pred HhhCEEEe
Confidence 99999974
No 6
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.89 E-value=2.6e-23 Score=192.88 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.5
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhc
Q 043082 95 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKR 174 (179)
Q Consensus 95 ~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~r 174 (179)
..+++|||||||||||+||||||||+|+++|+||++++|||+||+++++|+||++|+++++++.+ ...+++.|++|+++
T Consensus 9 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~-~~~~~~~~~~F~~~ 87 (484)
T PRK12854 9 APPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRGDVSAEAFREHARDALDEFGA-RKLDDGEWARFAKR 87 (484)
T ss_pred CCCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc-CccCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999999999998753 23478889999999
Q ss_pred CcccC
Q 043082 175 CFYHS 179 (179)
Q Consensus 175 l~Yv~ 179 (179)
++|++
T Consensus 88 ~~Y~~ 92 (484)
T PRK12854 88 LRYVP 92 (484)
T ss_pred CEEEe
Confidence 99974
No 7
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.89 E-value=3e-23 Score=192.29 Aligned_cols=84 Identities=29% Similarity=0.479 Sum_probs=77.2
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhc
Q 043082 95 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKR 174 (179)
Q Consensus 95 ~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~r 174 (179)
.++++|||||||||||+||||||||+|++.|+||++|+|||+||+++++|+||++|+++|+++.. ...+++.|++|+++
T Consensus 6 ~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~-~~~~~~~~~~F~~~ 84 (482)
T PRK12853 6 APPCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRAFGA-DGFDDAVWDRLAAR 84 (482)
T ss_pred CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHHhhcc-CccCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999999999998753 22467889999999
Q ss_pred CcccC
Q 043082 175 CFYHS 179 (179)
Q Consensus 175 l~Yv~ 179 (179)
++|++
T Consensus 85 ~~Y~~ 89 (482)
T PRK12853 85 LSYVQ 89 (482)
T ss_pred CEEEe
Confidence 99985
No 8
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=99.88 E-value=7.4e-23 Score=189.64 Aligned_cols=82 Identities=37% Similarity=0.665 Sum_probs=74.2
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcC
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRC 175 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl 175 (179)
++++|||||||||||+||||||||+|++.|+||++++|||+||+++++|+|+++|+++|+++.+ .. ++++|++|++++
T Consensus 1 ~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~Iig~aR~~~s~e~f~~~v~~~l~~~~~-~~-~~~~~~~F~~~~ 78 (482)
T TIGR00871 1 DPCILVIFGASGDLARKKLFPALYRLFRNGLLPPDFRIVGVARRDLSVEDFRKQVREAIIKFET-EE-IDEQLDDFAQRL 78 (482)
T ss_pred CCeEEEEECCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcC-cc-hHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999999998753 12 234499999999
Q ss_pred cccC
Q 043082 176 FYHS 179 (179)
Q Consensus 176 ~Yv~ 179 (179)
+|++
T Consensus 79 ~Y~~ 82 (482)
T TIGR00871 79 SYVS 82 (482)
T ss_pred EEEe
Confidence 9974
No 9
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=99.88 E-value=1e-22 Score=189.24 Aligned_cols=85 Identities=48% Similarity=0.725 Sum_probs=77.0
Q ss_pred CCCCCCeEEEEEccchhhhhhhhHHHHHHHHHcCCC-CCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHH
Q 043082 92 EKSGSTLSITVVGASGDLAKKKIFPALFALYYEDCL-PEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQ 170 (179)
Q Consensus 92 ~~~~~p~slVIFGATGDLAkRKL~PALf~L~~~glL-P~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~ 170 (179)
+...++++|||||||||||+||||||||+|++.|+| |++++|||+||+++++++||++++++++++.+ .+++.|++
T Consensus 12 ~~~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~~s~e~fr~~v~~~l~~~~~---~~~~~~~~ 88 (491)
T PLN02539 12 VVETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRDRIRGYLKDEKN---APAEAVSK 88 (491)
T ss_pred cCCCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcc---ccHHHHHH
Confidence 445668999999999999999999999999999999 88999999999999999999999999998642 24667999
Q ss_pred HHhcCcccC
Q 043082 171 FLKRCFYHS 179 (179)
Q Consensus 171 Fl~rl~Yv~ 179 (179)
|+++++|++
T Consensus 89 F~~~~~Y~~ 97 (491)
T PLN02539 89 FLQLIKYVS 97 (491)
T ss_pred HHhhCeEEe
Confidence 999999974
No 10
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.85 E-value=1.5e-21 Score=183.23 Aligned_cols=81 Identities=44% Similarity=0.714 Sum_probs=71.1
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHH-HHHHH-HHHHhhhhccCCCCCHHHHHHHH
Q 043082 95 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDE-ELRNV-ISKTLTYRIDKKENCEDKMDQFL 172 (179)
Q Consensus 95 ~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdE-efr~~-V~eaL~~~~~~~~~d~e~~e~Fl 172 (179)
..+++|||||||||||+||||||||+|++.|+||++++|||+||++++++ +|++. +++.++... .+++.|++|+
T Consensus 52 ~~~~~iVIFGATGDLA~RKL~PAL~~L~~~g~lp~~~~IiG~aR~~~~~e~~~~~~~l~~~~~~~~----~~~~~~~~F~ 127 (542)
T PTZ00309 52 SRALTIIVLGASGDLAKKKTFPALFQLYCEGLLPSEVNIVGYARSKMSDVERWKKETLARFFKRLD----DRECHLEQFL 127 (542)
T ss_pred CCCeEEEEecCccHHhhhhHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhhccC----CcHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999 77776 666665432 2467899999
Q ss_pred hcCcccC
Q 043082 173 KRCFYHS 179 (179)
Q Consensus 173 ~rl~Yv~ 179 (179)
+|++|++
T Consensus 128 ~~~~Y~~ 134 (542)
T PTZ00309 128 KHISYIS 134 (542)
T ss_pred hcCEEEe
Confidence 9999974
No 11
>KOG0563 consensus Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=180.17 Aligned_cols=86 Identities=70% Similarity=1.047 Sum_probs=79.3
Q ss_pred CCCCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHH
Q 043082 93 KSGSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFL 172 (179)
Q Consensus 93 ~~~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl 172 (179)
+...+++|||||||||||+||+|||||+||++|++|++|.|+||||++++++++|+.+.+.+++..+.+ .|.++++.|+
T Consensus 13 ~~~~~~~iiVfGASGDLAKKK~fPaLf~L~~~g~lp~~~~i~GYARSklt~ee~~~~~~~~l~~~~~~~-~~~~k~~~F~ 91 (499)
T KOG0563|consen 13 QGESTLSIIVFGASGDLAKKKIFPALFALYREGLLPEDFKIFGYARSKLTDEELRKSISETLKCRKDEK-NCGEKLEDFL 91 (499)
T ss_pred CCcceEEEEEEecCchhhhcchhHHHHHHHHhccCCCceEEEEEecccCChHHHHHHHhhhcCCCcchh-hHhhhHHHHH
Confidence 334689999999999999999999999999999999999999999999999999999999999987643 6778999999
Q ss_pred hcCcccC
Q 043082 173 KRCFYHS 179 (179)
Q Consensus 173 ~rl~Yv~ 179 (179)
.|++|++
T Consensus 92 ~~~sY~~ 98 (499)
T KOG0563|consen 92 KRVSYVS 98 (499)
T ss_pred HHheecC
Confidence 9999985
No 12
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.27 E-value=1.7 Score=33.49 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=27.4
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHH
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 145 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEe 145 (179)
++|+||||-++++. +-.|.+.| ..|+++.|++-..++
T Consensus 1 I~V~GatG~vG~~l----~~~L~~~~-----~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRAL----AKQLLRRG-----HEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHH----HHHHHHTT-----SEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHH----HHHHHHCC-----CEEEEEecCchhccc
Confidence 68999999999873 23444444 899999999865444
No 13
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.99 E-value=5.2 Score=32.38 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=25.8
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
|.|+||||.+++ -++.+|-. .++.|.+..|..
T Consensus 1 I~V~GatG~~G~-~v~~~L~~--------~~~~V~~l~R~~ 32 (233)
T PF05368_consen 1 ILVTGATGNQGR-SVVRALLS--------AGFSVRALVRDP 32 (233)
T ss_dssp EEEETTTSHHHH-HHHHHHHH--------TTGCEEEEESSS
T ss_pred CEEECCccHHHH-HHHHHHHh--------CCCCcEEEEecc
Confidence 689999999994 45566655 568999999988
No 14
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=83.81 E-value=5.2 Score=27.82 Aligned_cols=55 Identities=22% Similarity=0.116 Sum_probs=44.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKT 153 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ea 153 (179)
.+++.|.|++.=..++.+|.|-.|+..---..++.||+++.. -+.+++.+.+.+.
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhc
Confidence 578999999999999999999999887432578999999996 5568888887665
No 15
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=82.51 E-value=4.3 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=41.5
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
...++.|.+++.=.-+..+|.|..++.. +.+++++....+.+++++.+++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHH
Confidence 4688999999999999999999999866 6788888776667777777655
No 16
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=62.87 E-value=14 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 043082 114 IFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLT 155 (179)
Q Consensus 114 L~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~ 155 (179)
--|.+|++..+|-+|..++| |.....|...|..+++.....
T Consensus 26 SrstiYr~i~~~~FPkpvkl-G~r~v~W~~SEI~~Wi~~~~~ 66 (70)
T COG3311 26 SRSTIYRLIKDGTFPKPVKL-GGRSVAWPESEIDEWIASRKA 66 (70)
T ss_pred cHHHHHHHHccCCCCCCeec-CcccccccHHHHHHHHHHHHh
Confidence 35899999999999988765 447778999888888766544
No 17
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=61.84 E-value=7.9 Score=31.86 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 95 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 95 ~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
..+..++|+||||.+++..+- .| .. .+..|+++.|+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~-~L---~~-----~g~~V~~~~R~~ 51 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVE-QL---LA-----KGFAVKAGVRDV 51 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHH-HH---Hh-----CCCEEEEEecCH
Confidence 345689999999999865432 22 22 235688888875
No 18
>PRK12828 short chain dehydrogenase; Provisional
Probab=59.32 E-value=20 Score=28.17 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=26.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
-+++|.||||-++.... -.|.+. +.+|++++|+....++..
T Consensus 8 k~vlItGatg~iG~~la----~~l~~~-----G~~v~~~~r~~~~~~~~~ 48 (239)
T PRK12828 8 KVVAITGGFGGLGRATA----AWLAAR-----GARVALIGRGAAPLSQTL 48 (239)
T ss_pred CEEEEECCCCcHhHHHH----HHHHHC-----CCeEEEEeCChHhHHHHH
Confidence 46999999998884322 112222 457999999765444433
No 19
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=58.94 E-value=13 Score=32.34 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
.|.|+||||| -|+|...|-. . +..|++..|++...+.+.
T Consensus 2 ~ILvlGGT~e--gr~la~~L~~---~-----g~~v~~s~~t~~~~~~~~ 40 (256)
T TIGR00715 2 TVLLMGGTVD--SRAIAKGLIA---Q-----GIEILVTVTTSEGKHLYP 40 (256)
T ss_pred eEEEEechHH--HHHHHHHHHh---C-----CCeEEEEEccCCcccccc
Confidence 5899999999 7778777652 2 357778777776544443
No 20
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.76 E-value=12 Score=29.52 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=28.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
..++|.||||-+++... . .|.+.| ..|++++|++...+.+...+
T Consensus 6 ~~ilItGasg~iG~~l~-~---~l~~~g-----~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 6 KTALVTGASRGIGRAIA-L---RLAADG-----AKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCChhHHHHHHHHH
Confidence 46999999999986532 1 222333 46899999865544444443
No 21
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=55.89 E-value=60 Score=21.82 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=42.6
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
...++.|.++.=-.-++.+|.|..+...-. ..++.|+++.....+.+++.+.+.+
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHH
Confidence 467888888776677889999999987743 3469999999877667887777655
No 22
>PRK07326 short chain dehydrogenase; Provisional
Probab=55.44 E-value=10 Score=30.23 Aligned_cols=44 Identities=20% Similarity=0.101 Sum_probs=27.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||||.++....-- | .. .+..|++++|+.-..+++.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~-l---~~-----~g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEA-L---LA-----EGYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHHHH-H---HH-----CCCEEEEeeCCHHHHHHHHHHH
Confidence 5789999999998654322 2 12 2457888998764444444443
No 23
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=53.84 E-value=17 Score=29.49 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=28.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||+|.++.... ..|.. ++.+|++.+|+.-..++..+.++
T Consensus 11 k~vlItGa~g~iG~~ia----~~l~~-----~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 11 RRALVTGSSQGIGYALA----EGLAQ-----AGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CEEEEECCcchHHHHHH----HHHHH-----cCCEEEEEeCCHHHHHHHHHHHH
Confidence 47999999999986532 12222 34578888887644444444443
No 24
>PRK07454 short chain dehydrogenase; Provisional
Probab=52.98 E-value=17 Score=29.17 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=27.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||||.++.... .. |.+. +.+|+.++|+.-..++..+.+
T Consensus 7 k~vlItG~sg~iG~~la-~~---l~~~-----G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 7 PRALITGASSGIGKATA-LA---FAKA-----GWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 46899999999875432 22 2223 457888888764445554444
No 25
>PRK08703 short chain dehydrogenase; Provisional
Probab=51.55 E-value=23 Score=28.41 Aligned_cols=44 Identities=30% Similarity=0.221 Sum_probs=29.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||+|=|++.. ...| .. .+.+|++++|+.-..++..+.+
T Consensus 7 k~vlItG~sggiG~~l-a~~l---~~-----~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQV-AKAY---AA-----AGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHH-HHHH---HH-----cCCEEEEEeCChHHHHHHHHHH
Confidence 4789999999888653 2222 22 2468999999875555555544
No 26
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=50.97 E-value=18 Score=21.90 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 116 PALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 116 PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
..+++|.++|.+|. ..+ | ++.-++.+++.+++.
T Consensus 16 ~ti~~~~~~g~i~~-~~~-g-~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 16 DTVYRLIHEGELPA-YRV-G-RHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHHcCCCCe-EEe-C-CeEEEeHHHHHHHHh
Confidence 47899999999984 443 6 566788888887764
No 27
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=50.63 E-value=69 Score=25.38 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=32.4
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKT 153 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ea 153 (179)
++|+|+||=..+.-| ...+. .|+.|+|+|.+- .-.-+.+.+.+++.
T Consensus 1 i~ILGsTGSIG~qtL-----dVi~~--~~d~f~v~~Lsa-~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 1 IAILGSTGSIGTQTL-----DVIRK--HPDKFEVVALSA-GSNIEKLAEQAREF 46 (129)
T ss_dssp EEEESTTSHHHHHHH-----HHHHH--CTTTEEEEEEEE-SSTHHHHHHHHHHH
T ss_pred CEEEcCCcHHHHHHH-----HHHHh--CCCceEEEEEEc-CCCHHHHHHHHHHh
Confidence 689999998876533 22333 388999999886 34467777777665
No 28
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.57 E-value=18 Score=29.02 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=28.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||||.++.. +...| .. ++.+|++++|+.-..+++...+
T Consensus 5 ~~vlItG~sg~iG~~-la~~l---~~-----~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 5 KVALVTGAASGIGLE-IALAL---AK-----EGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CEEEEECCCchHHHH-HHHHH---HH-----CCCeEEEEeCCHHHHHHHHHHH
Confidence 368999999999853 22222 22 3467899999876555555444
No 29
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.10 E-value=62 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=30.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||||-++.... .. |...| .+|+.++|++...++..+.+.
T Consensus 8 ~~vlItGasg~iG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 8 KTAVVTGAASGIGKEIA-LE---LARAG-----AAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CEEEEECCCChHHHHHH-HH---HHHCC-----CeEEEEeCChHHHHHHHHHHH
Confidence 47899999999987632 22 22334 468888998766666666554
No 30
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=49.26 E-value=15 Score=29.41 Aligned_cols=42 Identities=21% Similarity=0.111 Sum_probs=26.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.++|.||||.|+.. |...| .+. +..|++++|+.-..+.+.+.
T Consensus 3 ~vlItGa~g~lG~~-l~~~l---~~~-----g~~v~~~~r~~~~~~~~~~~ 44 (255)
T TIGR01963 3 TALVTGAASGIGLA-IALAL---AAA-----GANVVVNDLGEAGAEAAAKV 44 (255)
T ss_pred EEEEcCCcchHHHH-HHHHH---HHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 58999999999853 22222 233 35789999975444444443
No 31
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=48.72 E-value=60 Score=23.87 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=40.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCC-CCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDC-LPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~gl-LP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
...+|-|.||.--.-++.+|.|-.++.+-. -..++.|++++... +.+++.+.+.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~ 73 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-DEESFNDYFS 73 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-CHHHHHHHHH
Confidence 368999999999999999999988866532 12468999998653 4566666543
No 32
>PRK07074 short chain dehydrogenase; Provisional
Probab=48.34 E-value=17 Score=29.45 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=27.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
.++|.||||.++.... .. |... +.+|++++|+....+++.+.+
T Consensus 4 ~ilItGat~~iG~~la-~~---L~~~-----g~~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 4 TALVTGAAGGIGQALA-RR---FLAA-----GDRVLALDIDAAALAAFADAL 46 (257)
T ss_pred EEEEECCcchHHHHHH-HH---HHHC-----CCEEEEEeCCHHHHHHHHHHh
Confidence 5899999999986542 22 2233 356888888765555554443
No 33
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=48.01 E-value=64 Score=23.74 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=34.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
...++.|=++.=-.-+.-+|.|-.|+.+-- ..++.|||+...+.
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~-~~~~~vi~i~~~~~ 67 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYK-DDGLVVIGVHSPEF 67 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcC-cCCeEEEEeccCcc
Confidence 356677778887777888999999988743 35799999987543
No 34
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=47.14 E-value=90 Score=24.22 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=42.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC------CHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL------TDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~------tdEefr~~V~e 152 (179)
...++.|.+++=-..+..+|.|-.|..+-. ..++.|||+...+. +.+++++.+.+
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHh-hCCeEEEEEecCccccccccCHHHHHHHHHH
Confidence 468888889998888999999999986531 14799999997764 45777776654
No 35
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=46.11 E-value=24 Score=28.65 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=21.9
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|.||||-++... ... |.. ++.+|++++|+.
T Consensus 2 ~vlItGasg~iG~~l-a~~---l~~-----~G~~V~~~~r~~ 34 (248)
T PRK10538 2 IVLVTGATAGFGECI-TRR---FIQ-----QGHKVIATGRRQ 34 (248)
T ss_pred EEEEECCCchHHHHH-HHH---HHH-----CCCEEEEEECCH
Confidence 578999999887653 222 222 345788888875
No 36
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=45.00 E-value=84 Score=23.37 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=40.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCC-CCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCL-PEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glL-P~~frIIG~aRs~~tdEefr~~V~e 152 (179)
...+|-|.||.=-.-+..+|.|-.++..-.- ..++.|++++..+ +.+++++.+.+
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~ 73 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-SEESFNEYFSE 73 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-CHHHHHHHHhc
Confidence 5789999999999999999999887764211 1368999998754 34566555543
No 37
>PRK06057 short chain dehydrogenase; Provisional
Probab=44.77 E-value=49 Score=26.83 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=26.7
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
.-.++|.||||-|+.... ..|.+. +..|++++|++-..++..
T Consensus 7 ~~~vlItGasggIG~~~a----~~l~~~-----G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 7 GRVAVITGGGSGIGLATA----RRLAAE-----GATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHc-----CCEEEEEeCCHHHHHHHH
Confidence 357899999999986543 222233 357888888754333333
No 38
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.40 E-value=24 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
-+++|.||||-++....- .|... +.+|++++|+.-..++....
T Consensus 6 ~~vlItGasg~iG~~l~~----~l~~~-----G~~V~~~~r~~~~~~~~~~~ 48 (251)
T PRK07231 6 KVAIVTGASSGIGEGIAR----RFAAE-----GARVVVTDRNEEAAERVAAE 48 (251)
T ss_pred cEEEEECCCChHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 478999999999863322 12233 35689999987444444333
No 39
>PRK07774 short chain dehydrogenase; Provisional
Probab=42.94 E-value=27 Score=27.94 Aligned_cols=45 Identities=22% Similarity=0.130 Sum_probs=28.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||||-++..... .|... +.+|+.++|+....+++.+.+.
T Consensus 7 k~vlItGasg~iG~~la~----~l~~~-----g~~vi~~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAE----ALARE-----GASVVVADINAEGAERVAKQIV 51 (250)
T ss_pred CEEEEECCCchHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHHHHH
Confidence 358999999998754322 22223 3578889987654455555443
No 40
>PRK07478 short chain dehydrogenase; Provisional
Probab=41.20 E-value=62 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=28.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||||-++....- .|.+.| .+|+..+|+.-..++..+.++
T Consensus 7 k~~lItGas~giG~~ia~----~l~~~G-----~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 7 KVAIITGASSGIGRAAAK----LFAREG-----AKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred CEEEEeCCCChHHHHHHH----HHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 468999999998865321 233334 578888887655455554443
No 41
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=40.26 E-value=92 Score=25.12 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=24.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.-.++|.||+|.+++...- . |.+.| .+|+.++|+.
T Consensus 11 ~k~ilItGas~~IG~~la~-~---l~~~G-----~~v~~~~r~~ 45 (256)
T PRK06124 11 GQVALVTGSARGLGFEIAR-A---LAGAG-----AHVLVNGRNA 45 (256)
T ss_pred CCEEEEECCCchHHHHHHH-H---HHHcC-----CeEEEEeCCH
Confidence 4578999999999865332 2 22334 5788899875
No 42
>PRK09291 short chain dehydrogenase; Provisional
Probab=40.25 E-value=61 Score=26.03 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=26.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.++|.||||-++..- .-.|...| .+|+++.|++-..+++++.
T Consensus 4 ~vlVtGasg~iG~~i----a~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK09291 4 TILITGAGSGFGREV----ALRLARKG-----HNVIAGVQIAPQVTALRAE 45 (257)
T ss_pred EEEEeCCCCHHHHHH----HHHHHHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 589999999887654 22223333 5788888875434444433
No 43
>PRK07914 hypothetical protein; Reviewed
Probab=40.19 E-value=1.4e+02 Score=26.07 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=41.3
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcC
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRC 175 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl 175 (179)
++.+.+||=.+|+..++|++-+|-. .| ..++.+.. .|+..+...+|.+.++..+ -.++.+..+.+.+++
T Consensus 92 ~~~t~lil~~~~~~~~kk~~K~L~k---~g-----~~~v~~~~-~~~~~~l~~wi~~~a~~~g--~~i~~~A~~~L~~~~ 160 (320)
T PRK07914 92 PPGTVLVVVHSGGGRAKALANQLRK---LG-----AEVHPCAR-ITKAAERADFVRKEFRSLR--VKVDDDTVTALLDAV 160 (320)
T ss_pred CCCeEEEEEecCCcchhHHHHHHHH---CC-----CEEEecCC-CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Confidence 3434444444456666655555532 23 23555543 2478888999999888654 246777777776654
No 44
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=40.12 E-value=59 Score=26.16 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=28.9
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
.-+++|.||+|-++....- .|.+.| .+|++++|+....+++.+.+
T Consensus 12 ~k~vlItG~~g~iG~~la~----~l~~~G-----~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 12 DRIILVTGAGDGIGREAAL----TYARHG-----ATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CCEEEEeCCCchHHHHHHH----HHHHCC-----CcEEEEeCCHHHHHHHHHHH
Confidence 3579999999998865443 122333 47888888765445554444
No 45
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=40.01 E-value=33 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=22.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|+||||-++++-+ ..| ...| ..|.+..|++
T Consensus 1 ~ilVtGatG~iG~~vv-~~L---~~~g-----~~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIA-RLL---QAAS-----VPFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHH-HHH---HhCC-----CcEEEEeCCC
Confidence 3789999999987644 444 3333 4577777765
No 46
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=39.40 E-value=1.2e+02 Score=25.70 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=27.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
-.++|.||||-++...+ . .|...| ..|++..|+....+.+.
T Consensus 6 ~~vlVTGatG~iG~~l~-~---~L~~~g-----~~V~~~~r~~~~~~~~~ 46 (322)
T PLN02986 6 KLVCVTGASGYIASWIV-K---LLLLRG-----YTVKATVRDLTDRKKTE 46 (322)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEECCCcchHHHH
Confidence 47999999999996543 2 233333 57888888765544433
No 47
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=38.60 E-value=1.3e+02 Score=22.00 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=40.1
Q ss_pred CeEEEEEccchhhh-hhhhHHHHHHHHHcCCCC--CCceEEEEeCCCC--CHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLA-KKKIFPALFALYYEDCLP--EDFTVFGYARTKL--TDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLA-kRKL~PALf~L~~~glLP--~~frIIG~aRs~~--tdEefr~~V~e 152 (179)
...+|+|.+++.-. -+..+|.|-.++..=.-- +++.|++++-.+. +.+.+++.+.+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~ 83 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA 83 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999986 999999999987643111 3599999997664 34556555544
No 48
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=38.57 E-value=1.5e+02 Score=21.46 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=38.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
..+|.|-|+.--.-+..+|.|-.|.+.+ ++.|||++-. -+.++.++.+.+
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~-~~~~~~~~~~~~ 76 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYK-DNPENALAWLAR 76 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECC-CCHHHHHHHHHh
Confidence 5677777999999999999999998775 4899999854 345666665443
No 49
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=37.94 E-value=1.4e+02 Score=23.81 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=40.8
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHc---CC---CCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYE---DC---LPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~---gl---LP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
...+|-|.||-==.-|+.+|.|-.++.. .. -.+++.|||++..+ +.+++.+.+.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-~~~~~~~f~~~ 86 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-SEQQQESFLKD 86 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-CHHHHHHHHHH
Confidence 5789999999888899999999888752 21 22469999999543 55666665543
No 50
>PRK06914 short chain dehydrogenase; Provisional
Probab=37.70 E-value=38 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=26.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.++|.||||-++.... ..| ..+ +..|++++|+.-..++..+.
T Consensus 5 ~~lItGasg~iG~~la-~~l---~~~-----G~~V~~~~r~~~~~~~~~~~ 46 (280)
T PRK06914 5 IAIVTGASSGFGLLTT-LEL---AKK-----GYLVIATMRNPEKQENLLSQ 46 (280)
T ss_pred EEEEECCCchHHHHHH-HHH---HhC-----CCEEEEEeCCHHHHHHHHHH
Confidence 5799999999986543 222 233 46788888876444444333
No 51
>PRK07062 short chain dehydrogenase; Provisional
Probab=37.68 E-value=62 Score=26.35 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=28.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||||-+++. +.-.|. + .+.+|+.++|+.-..++..+.+.
T Consensus 9 k~~lItGas~giG~~-ia~~l~---~-----~G~~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 9 RVAVVTGGSSGIGLA-TVELLL---E-----AGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred CEEEEeCCCchHHHH-HHHHHH---H-----CCCeEEEEeCCHHHHHHHHHHHH
Confidence 479999999999864 333332 2 34578899997644444444443
No 52
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=35.73 E-value=44 Score=27.79 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=23.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
.++|.||+|-++.. |...| .+.| ..|++++|+..
T Consensus 2 ~vlItG~~G~iG~~-l~~~L---~~~g-----~~V~~~~r~~~ 35 (328)
T TIGR03466 2 KVLVTGATGFVGSA-VVRLL---LEQG-----EEVRVLVRPTS 35 (328)
T ss_pred eEEEECCccchhHH-HHHHH---HHCC-----CEEEEEEecCc
Confidence 47899999999876 33444 2333 57888888754
No 53
>PRK08265 short chain dehydrogenase; Provisional
Probab=35.61 E-value=1.1e+02 Score=25.02 Aligned_cols=35 Identities=14% Similarity=-0.090 Sum_probs=23.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
-.++|.||||.+++.-. . .|.+.| .+|+.++|+.-
T Consensus 7 k~vlItGas~gIG~~ia-~---~l~~~G-----~~V~~~~r~~~ 41 (261)
T PRK08265 7 KVAIVTGGATLIGAAVA-R---ALVAAG-----ARVAIVDIDAD 41 (261)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 47899999999886543 2 222344 46777788653
No 54
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.99 E-value=1.9e+02 Score=21.46 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=28.1
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTL 154 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL 154 (179)
+++|+||+|-|++-. ...+... ...+|+.++|+ .+.+-.+.+.+.+
T Consensus 2 ~~lItGa~~giG~~~-----a~~l~~~---g~~~v~~~~r~--~~~~~~~~l~~~l 47 (167)
T PF00106_consen 2 TVLITGASSGIGRAL-----ARALARR---GARVVILTSRS--EDSEGAQELIQEL 47 (167)
T ss_dssp EEEEETTTSHHHHHH-----HHHHHHT---TTEEEEEEESS--CHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHH-----HHHHHhc---CceEEEEeeec--ccccccccccccc
Confidence 579999999998743 2333332 24689999998 3333333333434
No 55
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=34.94 E-value=36 Score=27.56 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=24.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
..++|.||||.|+.. |...| .+. +.+|+.++|+.-..++.
T Consensus 7 ~~vlItGas~~iG~~-ia~~l---~~~-----G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 7 KVALLTGAASGIGEA-VAERY---LAE-----GARVVIADIKPARARLA 46 (257)
T ss_pred CEEEEeCCCchHHHH-HHHHH---HHc-----CCEEEEEcCCHHHHHHH
Confidence 468999999999853 22222 222 45788888865433333
No 56
>PRK08177 short chain dehydrogenase; Provisional
Probab=34.25 E-value=60 Score=25.84 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=25.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
.++|.||+|=|++.... .|.+. +.+|++++|+.-..++.
T Consensus 3 ~vlItG~sg~iG~~la~----~l~~~-----G~~V~~~~r~~~~~~~~ 41 (225)
T PRK08177 3 TALIIGASRGLGLGLVD----RLLER-----GWQVTATVRGPQQDTAL 41 (225)
T ss_pred EEEEeCCCchHHHHHHH----HHHhC-----CCEEEEEeCCCcchHHH
Confidence 57899999987765321 22233 45799999987655443
No 57
>PRK05875 short chain dehydrogenase; Provisional
Probab=33.95 E-value=39 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=24.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
-.++|.||+|.++.... ..|.+.| .+|++++|+.-..++.
T Consensus 8 k~vlItGasg~IG~~la----~~l~~~G-----~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVA----AGLVAAG-----AAVMIVGRNPDKLAAA 47 (276)
T ss_pred CEEEEECCCcHHHHHHH----HHHHHCC-----CeEEEEeCCHHHHHHH
Confidence 46899999999985432 1222333 5788888875333333
No 58
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=33.67 E-value=1.2e+02 Score=24.54 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=27.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
.++|.||+|.++.-.. - .|... +.+|+.++|+....++..+.+.
T Consensus 4 ~ilItG~~~~IG~~la-~---~l~~~-----g~~vi~~~r~~~~~~~~~~~~~ 47 (259)
T PRK12384 4 VAVVIGGGQTLGAFLC-H---GLAEE-----GYRVAVADINSEKAANVAQEIN 47 (259)
T ss_pred EEEEECCCcHHHHHHH-H---HHHHC-----CCEEEEEECCHHHHHHHHHHHH
Confidence 5899999999886432 1 12222 4578888887655555444443
No 59
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.36 E-value=1.1e+02 Score=24.20 Aligned_cols=44 Identities=25% Similarity=0.172 Sum_probs=26.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEE-eCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGY-ARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~-aRs~~tdEefr~~V 150 (179)
-.++|.||||.++.... ..| .+.| .+++.+ +|+.-..++..+.+
T Consensus 6 ~~ilI~Gasg~iG~~la-~~l---~~~g-----~~v~~~~~r~~~~~~~~~~~~ 50 (247)
T PRK05565 6 KVAIVTGASGGIGRAIA-ELL---AKEG-----AKVVIAYDINEEAAQELLEEI 50 (247)
T ss_pred CEEEEeCCCcHHHHHHH-HHH---HHCC-----CEEEEEcCCCHHHHHHHHHHH
Confidence 36899999999996544 222 2333 466666 77654444444443
No 60
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=33.22 E-value=97 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=26.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||||.++....- .|.+. +..|+.++|+....++..+.+
T Consensus 4 ~~ilItGas~~iG~~la~----~l~~~-----g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCR----RFAEE-----GAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CEEEEeCCCChHHHHHHH----HHHHC-----CCEEEEecCCHHHHHHHHHHH
Confidence 358999999999865421 22233 457888888764444444333
No 61
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.89 E-value=64 Score=25.73 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=27.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.-.++|.||||-|+....-- |... +..|+.++|++-..++..+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~----L~~~-----G~~Vi~~~r~~~~~~~~~~~ 50 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIA----LAKE-----GVNVGLLARTEENLKAVAEE 50 (239)
T ss_pred CCEEEEEcCCchHHHHHHHH----HHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 35689999999887643221 2223 45788888876444444333
No 62
>PRK09186 flagellin modification protein A; Provisional
Probab=32.69 E-value=59 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=27.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-.++|.||||-+++-. ...| .+ ++.+|++++|+.-..++..+.+.
T Consensus 5 k~vlItGas~giG~~~-a~~l---~~-----~g~~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 5 KTILITGAGGLIGSAL-VKAI---LE-----AGGIVIAADIDKEALNELLESLG 49 (256)
T ss_pred CEEEEECCCchHHHHH-HHHH---HH-----CCCEEEEEecChHHHHHHHHHHH
Confidence 3689999999887532 2222 22 34578888887655555555543
No 63
>PRK06172 short chain dehydrogenase; Provisional
Probab=32.45 E-value=1.5e+02 Score=23.77 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=27.7
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.-.++|.||+|-++.... ..|.+.| .+|+.++|++-..++..+.
T Consensus 7 ~k~ilItGas~~iG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (253)
T PRK06172 7 GKVALVTGGAAGIGRATA----LAFAREG-----AKVVVADRDAAGGEETVAL 50 (253)
T ss_pred CCEEEEeCCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 357999999999987632 1233334 4688888876443444333
No 64
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=32.36 E-value=82 Score=27.21 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=26.7
Q ss_pred CCCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHH
Q 043082 95 GSTLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 145 (179)
Q Consensus 95 ~~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEe 145 (179)
+....++|.||+|=++.... ..| ... +..|+++.|.....+.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~-~~L---~~~-----G~~V~~~~r~~~~~~~ 49 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLV-KLL---LQR-----GYTVHATLRDPAKSLH 49 (353)
T ss_pred cCCCEEEEECCCcHHHHHHH-HHH---HHC-----CCEEEEEeCChHHHHH
Confidence 34557999999998876533 222 233 4678888887543333
No 65
>PRK07060 short chain dehydrogenase; Provisional
Probab=31.83 E-value=94 Score=24.66 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=23.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|+||+|-++..-.. .|.+.| ..|+.++|+.
T Consensus 10 ~~~lItGa~g~iG~~~a~----~l~~~g-----~~V~~~~r~~ 43 (245)
T PRK07060 10 KSVLVTGASSGIGRACAV----ALAQRG-----ARVVAAARNA 43 (245)
T ss_pred CEEEEeCCcchHHHHHHH----HHHHCC-----CEEEEEeCCH
Confidence 478999999999876532 223344 4688888865
No 66
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=31.79 E-value=41 Score=27.30 Aligned_cols=43 Identities=28% Similarity=0.093 Sum_probs=25.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
-.++|.||+|.++.. +.- .|...| .+|+.++|+.-..+...+.
T Consensus 13 k~ilItGa~g~IG~~-la~---~l~~~G-----~~V~~~~r~~~~~~~~~~~ 55 (259)
T PRK08213 13 KTALVTGGSRGLGLQ-IAE---ALGEAG-----ARVVLSARKAEELEEAAAH 55 (259)
T ss_pred CEEEEECCCchHHHH-HHH---HHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 469999999999854 222 222233 4688888865333333333
No 67
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=31.74 E-value=20 Score=26.84 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=27.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLP 128 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP 128 (179)
.++.|++-+++++..|+=++|+|...|.+-
T Consensus 29 e~~~~~~~~~~TKNelL~~vYWLE~ngyI~ 58 (85)
T PF11313_consen 29 EFIDFPGAYDFTKNELLYTVYWLEENGYIF 58 (85)
T ss_pred HHHhccccccccHHHHHHHHHHHhhcCeeE
Confidence 378999999999999999999999999983
No 68
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=31.65 E-value=1.1e+02 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=27.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
...++|+||||..++... . .|...| .+|+.++|+.-..+++.+.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a-~---~l~~~g-----~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAA-V---LLAREG-----ARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCEEEEECCCCHHHHHHH-H---HHHHCC-----CEEEEEcCCHHHHHHHHHHH
Confidence 357999999999996433 2 222333 35666778753334444443
No 69
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.57 E-value=1.1e+02 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=26.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
+++|.||||-|+.... .. |.+.| ..|+.++|++-..++..+.
T Consensus 3 ~vlItGas~giG~~~a-~~---l~~~G-----~~Vi~~~r~~~~~~~~~~~ 44 (243)
T PRK07102 3 KILIIGATSDIARACA-RR---YAAAG-----ARLYLAARDVERLERLADD 44 (243)
T ss_pred EEEEEcCCcHHHHHHH-HH---HHhcC-----CEEEEEeCCHHHHHHHHHH
Confidence 5899999999885432 22 22334 5688888876444444333
No 70
>PRK08263 short chain dehydrogenase; Provisional
Probab=31.20 E-value=41 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=22.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT 142 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~t 142 (179)
.++|.||||-+++. +... |.+.| ..|++.+|+...
T Consensus 5 ~vlItGasg~iG~~-~a~~---l~~~g-----~~V~~~~r~~~~ 39 (275)
T PRK08263 5 VWFITGASRGFGRA-WTEA---ALERG-----DRVVATARDTAT 39 (275)
T ss_pred EEEEeCCCChHHHH-HHHH---HHHCC-----CEEEEEECCHHH
Confidence 68999999999865 2222 22333 568888886533
No 71
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=31.18 E-value=28 Score=28.46 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=23.8
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCH
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTD 143 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~td 143 (179)
++|.||||-++...+ .. |.. .+..|+++.|+....
T Consensus 1 vlVtGatG~iG~~l~-~~---L~~-----~g~~V~~~~r~~~~~ 35 (292)
T TIGR01777 1 ILITGGTGFIGRALT-QR---LTK-----DGHEVTILTRSPPAG 35 (292)
T ss_pred CEEEcccchhhHHHH-HH---HHH-----cCCEEEEEeCCCCCC
Confidence 479999999986532 22 222 346899999977654
No 72
>PRK07677 short chain dehydrogenase; Provisional
Probab=30.86 E-value=54 Score=26.55 Aligned_cols=43 Identities=26% Similarity=0.176 Sum_probs=26.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
+++|.||+|.++..-.. .|.+. +.+|+.++|+....++..+.+
T Consensus 3 ~~lItG~s~giG~~ia~----~l~~~-----G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 3 VVIITGGSSGMGKAMAK----RFAEE-----GANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred EEEEeCCCChHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 57899999998864321 11222 347888888764444444443
No 73
>PRK08643 acetoin reductase; Validated
Probab=30.74 E-value=1.3e+02 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=25.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
+++|.||+|.++.. |.-.| .+. +.+|+.++|+.-..++....+
T Consensus 4 ~~lItGas~giG~~-la~~l---~~~-----G~~v~~~~r~~~~~~~~~~~~ 46 (256)
T PRK08643 4 VALVTGAGQGIGFA-IAKRL---VED-----GFKVAIVDYNEETAQAAADKL 46 (256)
T ss_pred EEEEECCCChHHHH-HHHHH---HHC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 57899999999864 22222 223 357888888754434443333
No 74
>PRK06125 short chain dehydrogenase; Provisional
Probab=30.68 E-value=1.1e+02 Score=24.74 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=27.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
-+++|.||+|.|++-- ...| ... +..|++++|+....++..+.+.
T Consensus 8 k~vlItG~~~giG~~i-a~~l---~~~-----G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 8 KRVLITGASKGIGAAA-AEAF---AAE-----GCHLHLVARDADALEALAADLR 52 (259)
T ss_pred CEEEEeCCCchHHHHH-HHHH---HHc-----CCEEEEEeCCHHHHHHHHHHHH
Confidence 5799999999998532 2222 222 3578888887644444444443
No 75
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=30.64 E-value=2.3e+02 Score=21.67 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=39.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC------CCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK------LTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~------~tdEefr~~V~e 152 (179)
...+|.|-||.=- -++-+|.|-.|+..- -..++.|||++... -+.++.++.+.+
T Consensus 23 k~vvl~fwatwC~-C~~e~p~l~~l~~~~-~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 23 KVLLIVNVASKCG-FTPQYEGLEALYEKY-KDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred CEEEEEEEcCCCC-chHHHHHHHHHHHHh-cCCCEEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 4577778888777 788889999998764 23579999998653 234666666654
No 76
>PRK07814 short chain dehydrogenase; Provisional
Probab=30.30 E-value=49 Score=27.12 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=26.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
-.++|.||+|-++.... ..+. ..+..|++++|+.-..+++.+.
T Consensus 11 ~~vlItGasggIG~~~a-----~~l~----~~G~~Vi~~~r~~~~~~~~~~~ 53 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIA-----LAFA----EAGADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CEEEEECCCChHHHHHH-----HHHH----HCCCEEEEEeCCHHHHHHHHHH
Confidence 46899999999887532 2111 1345788888875333444333
No 77
>PRK07890 short chain dehydrogenase; Provisional
Probab=30.28 E-value=50 Score=26.56 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=27.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
..++|.||||=+++... -. |...| ..|++++|+.-..++..+.+
T Consensus 6 k~vlItGa~~~IG~~la-~~---l~~~G-----~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLA-VR---AARAG-----ADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHH-HH---HHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 46899999998875321 11 22334 47888888764444544443
No 78
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=30.11 E-value=43 Score=32.82 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=27.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 148 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~ 148 (179)
-.++|+||+|-++++.+- .|.+. +..|+++.|+.-..+.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr----~LLk~-----G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVR----ELLKL-----GFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHH----HHHHC-----CCeEEEEeCCHHHHHHHHH
Confidence 468999999999876542 23333 4678888887644444433
No 79
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.02 E-value=44 Score=27.74 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=22.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|.||||-+++... - .|... +..|++++|+.
T Consensus 6 ~vlItGasggiG~~la-~---~l~~~-----G~~Vi~~~r~~ 38 (277)
T PRK05993 6 SILITGCSSGIGAYCA-R---ALQSD-----GWRVFATCRKE 38 (277)
T ss_pred EEEEeCCCcHHHHHHH-H---HHHHC-----CCEEEEEECCH
Confidence 6899999999986431 1 12223 46788888874
No 80
>PRK06949 short chain dehydrogenase; Provisional
Probab=30.00 E-value=52 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.059 Sum_probs=23.7
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.-.++|.||+|.++....-- |.+. +.+|++++|+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~----l~~~-----G~~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQV----LAQA-----GAKVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHH----HHHC-----CCEEEEEeCCH
Confidence 35799999999998654322 2223 35788888864
No 81
>PRK08219 short chain dehydrogenase; Provisional
Probab=28.69 E-value=63 Score=25.25 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=21.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||+|=|+..- ...|- + + ..|++++|+.
T Consensus 4 ~~vlVtG~~g~iG~~l-~~~l~----~----~-~~V~~~~r~~ 36 (227)
T PRK08219 4 PTALITGASRGIGAAI-ARELA----P----T-HTLLLGGRPA 36 (227)
T ss_pred CEEEEecCCcHHHHHH-HHHHH----h----h-CCEEEEeCCH
Confidence 3689999999887433 22221 1 2 4688888875
No 82
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=28.57 E-value=2.5e+02 Score=21.31 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=39.6
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
...+|.|-+++.-..+...|.|-.+..+=. ..++.+|++...+ +.+++++.+.
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~-~~~~~vi~i~~d~-~~~~~~~~~~ 114 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYK-EKGVEIIAVNVDE-TELAVKNFVN 114 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhh-cCCeEEEEEEcCC-CHHHHHHHHH
Confidence 457788889999999999999999986421 2458999998754 4466665554
No 83
>PRK06181 short chain dehydrogenase; Provisional
Probab=28.55 E-value=58 Score=26.42 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=23.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 145 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEe 145 (179)
.++|.||+|.++....- .| ...| ..|++++|++-..++
T Consensus 3 ~vlVtGasg~iG~~la~-~l---~~~g-----~~Vi~~~r~~~~~~~ 40 (263)
T PRK06181 3 VVIITGASEGIGRALAV-RL---ARAG-----AQLVLAARNETRLAS 40 (263)
T ss_pred EEEEecCCcHHHHHHHH-HH---HHCC-----CEEEEEeCCHHHHHH
Confidence 57899999999854322 11 1233 468888887533333
No 84
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=28.07 E-value=2.4e+02 Score=20.56 Aligned_cols=44 Identities=11% Similarity=-0.002 Sum_probs=36.0
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++.++.|.+++--.-+.-+|.|-.++.+-. ..++.|||++..+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELD-ALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCC
Confidence 4677888899999999999999999887643 3469999999765
No 85
>CHL00194 ycf39 Ycf39; Provisional
Probab=28.03 E-value=43 Score=28.63 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=23.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|+||||=++.. |.+.|- ..| ..|+++.|+.
T Consensus 2 kIlVtGatG~iG~~-lv~~Ll---~~g-----~~V~~l~R~~ 34 (317)
T CHL00194 2 SLLVIGATGTLGRQ-IVRQAL---DEG-----YQVRCLVRNL 34 (317)
T ss_pred EEEEECCCcHHHHH-HHHHHH---HCC-----CeEEEEEcCh
Confidence 58999999988865 444443 334 5788998874
No 86
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.93 E-value=57 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=24.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 145 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEe 145 (179)
-+++|.||+|-++.... .. |.+.| .+|++++|+.-..++
T Consensus 6 k~~lItG~sg~iG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~ 44 (252)
T PRK06138 6 RVAIVTGAGSGIGRATA-KL---FAREG-----ARVVVADRDAEAAER 44 (252)
T ss_pred cEEEEeCCCchHHHHHH-HH---HHHCC-----CeEEEecCCHHHHHH
Confidence 47899999999986432 11 22333 468888887533333
No 87
>PRK08226 short chain dehydrogenase; Provisional
Probab=27.83 E-value=2.3e+02 Score=22.91 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=23.9
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.-.++|.||||-+++. +...| ...| .+|+.++|+.
T Consensus 6 ~~~~lItG~s~giG~~-la~~l---~~~G-----~~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEG-IARVF---ARHG-----ANLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHH-HHHHH---HHCC-----CEEEEecCCH
Confidence 3578999999999876 33332 2333 4688888865
No 88
>PRK05650 short chain dehydrogenase; Provisional
Probab=27.82 E-value=63 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=24.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 148 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~ 148 (179)
.++|.||||.++....- .|.+. +..|+.++|+.-..++..+
T Consensus 2 ~vlVtGasggIG~~la~----~l~~~-----g~~V~~~~r~~~~~~~~~~ 42 (270)
T PRK05650 2 RVMITGAASGLGRAIAL----RWARE-----GWRLALADVNEEGGEETLK 42 (270)
T ss_pred EEEEecCCChHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 47899999999876432 22223 3567777776543344333
No 89
>PTZ00056 glutathione peroxidase; Provisional
Probab=27.68 E-value=2e+02 Score=23.59 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=41.3
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC------CCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK------LTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~------~tdEefr~~V~e 152 (179)
...+|.|=||.--.-++-+|.|-.|++.-. ..++.|||+...+ -+.++.++.+.+
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~-~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~ 100 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFN-PLGLEILAFPTSQFLNQEFPNTKDIRKFNDK 100 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHh-cCceEEEEecchhccCCCCCCHHHHHHHHHH
Confidence 367888889988888999999999988742 4579999998653 234666666554
No 90
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=27.61 E-value=11 Score=24.64 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 116 PALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 116 PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
-.+|++.++|.+|+.+.| |-.+.-|..+|..++
T Consensus 18 ~ti~~~~k~g~FP~pvkl-g~r~~~W~~~eV~~W 50 (51)
T PF05930_consen 18 STIYRLIKDGKFPKPVKL-GGRAVRWRESEVEAW 50 (51)
T ss_dssp HHHHHHHHHHH---SEES-SS-------------
T ss_pred HHHHHHHhcccCCCCEEE-CCCcccccccccccc
Confidence 368999999999998875 433445666655444
No 91
>PRK06180 short chain dehydrogenase; Provisional
Probab=27.55 E-value=58 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=22.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||-+++...- .| .+. +.+|++++|+.
T Consensus 5 ~~vlVtGasggiG~~la~-~l---~~~-----G~~V~~~~r~~ 38 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQ-AA---LAA-----GHRVVGTVRSE 38 (277)
T ss_pred CEEEEecCCChHHHHHHH-HH---HhC-----cCEEEEEeCCH
Confidence 468999999988754322 22 222 45688888865
No 92
>PRK08017 oxidoreductase; Provisional
Probab=27.52 E-value=59 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=21.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
+++|.||||.++....- .|.+.| .+|+.++|+.
T Consensus 4 ~vlVtGasg~IG~~la~----~l~~~g-----~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAAL----ELKRRG-----YRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHH----HHHHCC-----CEEEEEeCCH
Confidence 58999999988864321 222333 4678888865
No 93
>PRK06196 oxidoreductase; Provisional
Probab=27.39 E-value=87 Score=26.66 Aligned_cols=42 Identities=21% Similarity=0.060 Sum_probs=26.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRN 148 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~ 148 (179)
-.++|.||||-++....- .|... +.+|++++|+.-..++..+
T Consensus 27 k~vlITGasggIG~~~a~----~L~~~-----G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTR----ALAQA-----GAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 479999999988754321 23333 3578889997533344333
No 94
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=27.28 E-value=2.2e+02 Score=21.49 Aligned_cols=52 Identities=13% Similarity=-0.045 Sum_probs=34.4
Q ss_pred eEEEEEccc-hhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 98 LSITVVGAS-GDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 98 ~slVIFGAT-GDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
..+|.|.++ .--.-+..+|.|-.++..-- .+++.|||+... +.++..+.+.+
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~v~vi~Is~d--~~~~~~~~~~~ 84 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELK-KAGVVVLGISTD--KPEKLSRFAEK 84 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHH-HCCCEEEEEcCC--CHHHHHHHHHH
Confidence 455556554 44456778888888877622 357999999875 45666666544
No 95
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.06 E-value=63 Score=25.99 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=25.9
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
.-.++|.||+|-++... .. .|... +..|++++|+.-..+++.
T Consensus 11 ~~~vlItGa~g~iG~~~-a~---~L~~~-----g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 11 GLRVLVTGGASGIGRAI-AE---AFAEA-----GARVHVCDVSEAALAATA 52 (264)
T ss_pred CCEEEEeCCCCcHHHHH-HH---HHHHC-----CCEEEEEeCCHHHHHHHH
Confidence 35799999999998432 22 22233 357888888654334433
No 96
>PRK07035 short chain dehydrogenase; Provisional
Probab=27.03 E-value=64 Score=25.97 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=27.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||+|-++....- .|.+.| .+|++++|+.-..++..+.+
T Consensus 9 k~vlItGas~gIG~~l~~----~l~~~G-----~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 9 KIALVTGASRGIGEAIAK----LLAQQG-----AHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred CEEEEECCCcHHHHHHHH----HHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 368999999999854322 222333 47888888654334444443
No 97
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.96 E-value=1.9e+02 Score=27.62 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=36.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhcc------CCCCCHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRID------KKENCEDKMDQ 170 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~------~~~~d~e~~e~ 170 (179)
..++|||||||==++--..-++-.. .+ ++..|-=.||+.---++-.+.+.+....... .+..+++.+++
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~----~~-~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~e 79 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQ----VF-EGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDE 79 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhh----cc-cCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHH
Confidence 6889999999965544333333222 33 2344444445432223333333222211000 12345677888
Q ss_pred HHhcCc
Q 043082 171 FLKRCF 176 (179)
Q Consensus 171 Fl~rl~ 176 (179)
+++++.
T Consensus 80 mak~~~ 85 (423)
T KOG2733|consen 80 MAKQAR 85 (423)
T ss_pred HHhhhE
Confidence 877654
No 98
>PRK09242 tropinone reductase; Provisional
Probab=26.83 E-value=63 Score=26.18 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=26.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||+|.+++.... .|.+.| .+|+.++|+.-..++..+.+
T Consensus 10 k~~lItGa~~gIG~~~a~----~l~~~G-----~~v~~~~r~~~~~~~~~~~l 53 (257)
T PRK09242 10 QTALITGASKGIGLAIAR----EFLGLG-----ADVLIVARDADALAQARDEL 53 (257)
T ss_pred CEEEEeCCCchHHHHHHH----HHHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 478999999998854321 223334 46888888653334444333
No 99
>PRK07775 short chain dehydrogenase; Provisional
Probab=26.59 E-value=61 Score=26.87 Aligned_cols=40 Identities=30% Similarity=0.154 Sum_probs=25.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
-.++|.||+|.++.. +...| ..+ +.+|+.++|+.-..+++
T Consensus 11 ~~vlVtGa~g~iG~~-la~~L---~~~-----G~~V~~~~r~~~~~~~~ 50 (274)
T PRK07775 11 RPALVAGASSGIGAA-TAIEL---AAA-----GFPVALGARRVEKCEEL 50 (274)
T ss_pred CEEEEECCCchHHHH-HHHHH---HHC-----CCEEEEEeCCHHHHHHH
Confidence 368999999999854 33333 233 35677888865333333
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=26.58 E-value=2.3e+02 Score=19.87 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=37.2
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
...+|.|-++.=-.-++.+|.|-.++... ..++.|+++. +-+.++..+.+.+
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~--~~~~~vi~v~--~~~~~~~~~~~~~ 73 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAE--ADWLDVVLAS--DGEKAEHQRFLKK 73 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHh--cCCcEEEEEe--CCCHHHHHHHHHH
Confidence 35566677888888999999999987653 4568888774 4456666666544
No 101
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.51 E-value=83 Score=24.98 Aligned_cols=44 Identities=23% Similarity=0.015 Sum_probs=26.8
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
.-.++|.||+|-++....- .|.+.| .+|++++|++...++..+.
T Consensus 7 ~~~vlItGa~g~iG~~la~----~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAE----ALAEAG-----ATVAFNDGLAAEARELAAA 50 (250)
T ss_pred CCEEEEeCCCChHHHHHHH----HHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 3568999999998865321 122333 5688888875433444333
No 102
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=26.44 E-value=1.8e+02 Score=22.18 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=38.1
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcC
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRC 175 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl 175 (179)
+.+.+||+.. |.+.+|+- ++..... ...++-+.. ++..++..+|.+.++..+ -.++++..+.+++++
T Consensus 90 ~~~~lii~~~-~~~~~~~k---~~k~l~~-----~~~~~~~~~--~~~~~~~~~i~~~~~~~g--~~i~~~a~~~L~~~~ 156 (172)
T PF06144_consen 90 PDCILIIFSE-EKLDKRKK---LYKALKK-----QAIVIECKK--PKEQELPRWIKERAKKNG--LKIDPDAAQYLIERV 156 (172)
T ss_dssp SSEEEEEEES--S--HHHH---HHHHHTT-----TEEEEEE------TTTHHHHHHHHHHHTT---EE-HHHHHHHHHHH
T ss_pred CCEEEEEEeC-Cchhhhhh---HHHHHhc-----ccceEEecC--CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHh
Confidence 3466666666 77876665 5555544 344444443 467888888888888764 246777888877654
No 103
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.17 E-value=46 Score=24.33 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=21.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|+|+ |+.|.||+- .++..+-.|.=++.+.
T Consensus 8 ~~vlVvGg-G~va~~k~~---------~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGG-GPVAARKAR---------LLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEE-SHHHHHHHH---------HHCCCTBEEEEEESSE
T ss_pred CEEEEECC-CHHHHHHHH---------HHHhCCCEEEEECCch
Confidence 46788888 999999863 3344555666666654
No 104
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=25.63 E-value=76 Score=25.14 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=23.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
-+++|.||+|=++.... .. |.+.| ..|++++|+.-
T Consensus 7 ~~ilItGasg~iG~~l~-~~---l~~~g-----~~V~~~~r~~~ 41 (251)
T PRK12826 7 RVALVTGAARGIGRAIA-VR---LAADG-----AEVIVVDICGD 41 (251)
T ss_pred CEEEEcCCCCcHHHHHH-HH---HHHCC-----CEEEEEeCCHH
Confidence 46899999999875432 22 22333 57888988753
No 105
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.59 E-value=2.8e+02 Score=23.16 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=24.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT 142 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~t 142 (179)
-.++|.||||=++... .. .|... +..|+++.|+...
T Consensus 5 ~~ilVtGatGfIG~~l-~~---~L~~~-----g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWL-VK---LLLQR-----GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHH-HH---HHHHC-----CCEEEEEEcCCCc
Confidence 4689999999998653 22 23333 4578888887644
No 106
>PRK07069 short chain dehydrogenase; Validated
Probab=25.54 E-value=82 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=21.4
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
++|.||+|.+++... - .|.+.| .+|+.++|+.
T Consensus 2 ilVtG~~~~iG~~~a-~---~l~~~G-----~~v~~~~r~~ 33 (251)
T PRK07069 2 AFITGAAGGLGRAIA-R---RMAEQG-----AKVFLTDIND 33 (251)
T ss_pred EEEECCCChHHHHHH-H---HHHHCC-----CEEEEEeCCc
Confidence 689999999987632 2 223334 5688888873
No 107
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=25.50 E-value=2.5e+02 Score=20.73 Aligned_cols=53 Identities=13% Similarity=-0.068 Sum_probs=36.5
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
.++.++.|.|+.--.-++-+|.|-.++..-. ..+++||+++-.+ .+..+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~--~~~~~~~~~ 81 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFE-AAGAEVLGISVDS--PFSLRAWAE 81 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHH-hCCCEEEEecCCC--HHHHHHHHH
Confidence 4566667767766677889999998877532 3579999998643 444444443
No 108
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=25.43 E-value=2.2e+02 Score=22.39 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=21.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||-|+.... - .|.+.| ..|+..+|+.
T Consensus 7 ~~vlItGa~g~iG~~la-~---~l~~~g-----~~v~~~~~~~ 40 (245)
T PRK12936 7 RKALVTGASGGIGEEIA-R---LLHAQG-----AIVGLHGTRV 40 (245)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHCC-----CEEEEEcCCH
Confidence 47999999999987632 2 233444 2566666643
No 109
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=25.41 E-value=16 Score=34.87 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=39.9
Q ss_pred eEEEEEccch-hhhhhhhHHHHHHHHHcCCCCCCc-eEEEEeCCCCCHHHHHHHHHHHh
Q 043082 98 LSITVVGASG-DLAKKKIFPALFALYYEDCLPEDF-TVFGYARTKLTDEELRNVISKTL 154 (179)
Q Consensus 98 ~slVIFGATG-DLAkRKL~PALf~L~~~glLP~~f-rIIG~aRs~~tdEefr~~V~eaL 154 (179)
+.++.. ++| =|+||++.+++..+...|++|+.+ ++.|.-|..++.+.......+.+
T Consensus 240 ~~li~~-~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~ 297 (472)
T COG0008 240 LPLLLN-EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEG 297 (472)
T ss_pred eeeeec-CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 445555 888 999999999999999999999874 45555555555455444444443
No 110
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=25.37 E-value=1e+02 Score=24.70 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=22.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||+|.++.-.. - .|.. ++.+|++++|+.
T Consensus 6 k~vlItGas~gIG~~ia-~---~l~~-----~G~~vi~~~r~~ 39 (248)
T TIGR01832 6 KVALVTGANTGLGQGIA-V---GLAE-----AGADIVGAGRSE 39 (248)
T ss_pred CEEEEECCCchHHHHHH-H---HHHH-----CCCEEEEEcCch
Confidence 46899999999875321 1 1222 346788888865
No 111
>PRK09135 pteridine reductase; Provisional
Probab=24.95 E-value=1.2e+02 Score=24.04 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=23.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
..++|.||+|-|++-.. -. |.+ .+..|++++|+..
T Consensus 7 ~~vlItGa~g~iG~~l~-~~---l~~-----~g~~v~~~~r~~~ 41 (249)
T PRK09135 7 KVALITGGARRIGAAIA-RT---LHA-----AGYRVAIHYHRSA 41 (249)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHH-----CCCEEEEEcCCCH
Confidence 57999999998885322 11 122 3467899998753
No 112
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=24.92 E-value=2.2e+02 Score=24.55 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTD 143 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~td 143 (179)
.++|.||||-++.... -. |...| ....|+++.|+....
T Consensus 6 ~vLVTGatG~IG~~l~-~~---L~~~g---~~~~V~~~~r~~~~~ 43 (324)
T TIGR03589 6 SILITGGTGSFGKAFI-SR---LLENY---NPKKIIIYSRDELKQ 43 (324)
T ss_pred EEEEeCCCCHHHHHHH-HH---HHHhC---CCcEEEEEcCChhHH
Confidence 5899999998875432 22 22333 124688888865443
No 113
>PRK07825 short chain dehydrogenase; Provisional
Probab=24.76 E-value=72 Score=26.13 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=21.8
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||-+++...- .|...| ..|+.++|++
T Consensus 6 ~~ilVtGasggiG~~la~----~l~~~G-----~~v~~~~r~~ 39 (273)
T PRK07825 6 KVVAITGGARGIGLATAR----ALAALG-----ARVAIGDLDE 39 (273)
T ss_pred CEEEEeCCCchHHHHHHH----HHHHCC-----CEEEEEECCH
Confidence 468999999998864321 122333 4677777754
No 114
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=24.74 E-value=75 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=21.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
+++|.||+|.++....- .|.+. +..|+.++|+.
T Consensus 2 ~~lItG~sg~iG~~la~----~l~~~-----G~~v~~~~r~~ 34 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAE----RLAKD-----GFAVAVADLNE 34 (254)
T ss_pred EEEEeCCCchHHHHHHH----HHHHC-----CCEEEEEeCCH
Confidence 47899999999976322 12233 35678888764
No 115
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.52 E-value=76 Score=25.19 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=26.2
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||+|.++.. +.-.| ...| .+|+.++|+.-..++..+.+
T Consensus 6 ~~~lItG~~g~iG~~-~a~~l---~~~G-----~~vi~~~r~~~~~~~~~~~~ 49 (253)
T PRK08217 6 KVIVITGGAQGLGRA-MAEYL---AQKG-----AKLALIDLNQEKLEEAVAEC 49 (253)
T ss_pred CEEEEECCCchHHHH-HHHHH---HHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 468899999999865 22222 2233 47888888753333333333
No 116
>PRK08251 short chain dehydrogenase; Provisional
Probab=24.08 E-value=80 Score=25.25 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=26.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
+++|.||||-+++...- .|.+.| ..|+..+|++-..++..+.+.
T Consensus 4 ~vlItGas~giG~~la~----~l~~~g-----~~v~~~~r~~~~~~~~~~~~~ 47 (248)
T PRK08251 4 KILITGASSGLGAGMAR----EFAAKG-----RDLALCARRTDRLEELKAELL 47 (248)
T ss_pred EEEEECCCCHHHHHHHH----HHHHcC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 58999999999854321 223344 367777887644444444433
No 117
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.99 E-value=1.6e+02 Score=22.97 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHhhh
Q 043082 129 EDFTVFGYARTKLTDEELRNVISKTLTY 156 (179)
Q Consensus 129 ~~frIIG~aRs~~tdEefr~~V~eaL~~ 156 (179)
..+.++|.+-.+...+..+..++..++.
T Consensus 100 ~pv~~~g~g~gp~~~~~~~~~~~~~l~~ 127 (286)
T PF04230_consen 100 KPVIILGQGIGPFRSEEFKKLLRRILSK 127 (286)
T ss_pred CCeEEECceECccCCHHHHHHHHHHHhC
Confidence 4578999998777777777777777764
No 118
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=23.89 E-value=2.8e+02 Score=23.69 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=29.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCH---HHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTD---EELRNVISK 152 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~td---Eefr~~V~e 152 (179)
.+.|+||||=|+.. |...+.. .+..++++.|.+++- +++.+.+.+
T Consensus 2 riLI~GasG~lG~~-----l~~~l~~----~~~~v~~~~r~~~dl~d~~~~~~~~~~ 49 (286)
T PF04321_consen 2 RILITGASGFLGSA-----LARALKE----RGYEVIATSRSDLDLTDPEAVAKLLEA 49 (286)
T ss_dssp EEEEETTTSHHHHH-----HHHHHTT----TSEEEEEESTTCS-TTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHH-----HHHHHhh----CCCEEEEeCchhcCCCCHHHHHHHHHH
Confidence 68999999999853 4444332 457899998887543 444555443
No 119
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.77 E-value=1.2e+02 Score=25.80 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=22.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||-+++.-.- . |.+. +..|+.++|+.
T Consensus 41 k~vlItGasggIG~~la~-~---La~~-----G~~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGASSGIGEAAAE-Q---FARR-----GATVVAVARRE 74 (293)
T ss_pred CEEEEeCCCcHHHHHHHH-H---HHHC-----CCEEEEEECCH
Confidence 468999999998754321 1 2223 35788888875
No 120
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=23.74 E-value=3e+02 Score=22.09 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=37.1
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
..+|.|-|+.==.-++.+|.+-.+++.. ++.+++++.. +.++.++++++
T Consensus 76 ~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is~~--~~~~~~~~~~~ 124 (189)
T TIGR02661 76 PTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMISDG--TPAEHRRFLKD 124 (189)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEeCC--CHHHHHHHHHh
Confidence 5788888999889999999999987652 5778888743 45666666544
No 121
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=23.70 E-value=2.7e+02 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
+++|.||||=|+.. |+.. |.+.| ....|++..|..-
T Consensus 1 ~vlvtGatG~lG~~-l~~~---L~~~g---~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAY-LLEE---LLRRS---TQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHH-HHHH---HHhCC---CCCEEEEEEccCC
Confidence 36899999999944 3333 33444 2367999999763
No 122
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.58 E-value=92 Score=25.03 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=27.2
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELR 147 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr 147 (179)
.|+|+||||-+...-+=.-+-. ...|....|+.-....+.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~---------~~~v~~~~r~~~~~~~~~ 41 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR---------GHEVRAAVRNPEAAAALA 41 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC---------CCEEEEEEeCHHHHHhhc
Confidence 5899999999987654332222 577888888865544444
No 123
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=23.47 E-value=2.2e+02 Score=26.86 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=33.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKT 153 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ea 153 (179)
.++|+|+||-....-| .+. ...|+.|+|+|.+-.. .-+-+.+++++.
T Consensus 3 ~i~iLGSTGSIG~qtL-----dVi--~~~p~~f~vval~ag~-n~~~l~~q~~~f 49 (385)
T COG0743 3 KLTILGSTGSIGTQTL-----DVI--RRNPDKFEVVALAAGK-NVELLAEQIREF 49 (385)
T ss_pred eEEEEecCCchhHHHH-----HHH--HhCCCcEEEEEEecCC-cHHHHHHHHHHh
Confidence 5899999998876543 233 3347889999998766 566666666554
No 124
>PRK07832 short chain dehydrogenase; Provisional
Probab=23.41 E-value=88 Score=25.76 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=25.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNV 149 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~ 149 (179)
+++|.||||.++....- . |.+.| ..|+.++|+.-..++..+.
T Consensus 2 ~vlItGas~giG~~la~-~---la~~G-----~~vv~~~r~~~~~~~~~~~ 43 (272)
T PRK07832 2 RCFVTGAASGIGRATAL-R---LAAQG-----AELFLTDRDADGLAQTVAD 43 (272)
T ss_pred EEEEeCCCCHHHHHHHH-H---HHHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 47999999999865422 2 23334 4678888865333344333
No 125
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.38 E-value=1.3e+02 Score=24.67 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=24.2
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCC
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT 142 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~t 142 (179)
+.|.||||=+. +.|.+.|-.- +..|+|+.|....
T Consensus 3 ILVtG~tGfiG-~~l~~~L~~~--------g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIG-SHLVERLLAA--------GHDVRGLDRLRDG 36 (314)
T ss_pred EEEEcCcccHH-HHHHHHHHhC--------CCeEEEEeCCCcc
Confidence 89999999999 5555555432 5678888876543
No 126
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=23.01 E-value=1.8e+02 Score=23.62 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=25.0
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
.++|.||||-++.-. .-.|... ...++..|+.++|+.-..++..+.+
T Consensus 2 ~vlItGas~GIG~~~-a~~la~~----~~~~g~~V~~~~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTI-AQELAKC----LKSPGSVLVLSARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHH-HHHHHHh----hccCCcEEEEEEcCHHHHHHHHHHH
Confidence 478899999888531 1122111 1113466777787653334444443
No 127
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=22.94 E-value=19 Score=24.96 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=4.8
Q ss_pred EEEEccchhhhhh
Q 043082 100 ITVVGASGDLAKK 112 (179)
Q Consensus 100 lVIFGATGDLAkR 112 (179)
=-|.|||||.|.-
T Consensus 36 Cp~CgAtGd~AHT 48 (55)
T PF05741_consen 36 CPICGATGDNAHT 48 (55)
T ss_dssp -TTT---GGG---
T ss_pred CCCCcCcCccccc
Confidence 3468999999853
No 128
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=22.92 E-value=3.7e+02 Score=21.01 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 96 STLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 96 ~p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
....+|.|-|+.--.-++.+|.|-.+... ++.|||+...+ +.++.++.+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~-~~~~~~~~~~ 112 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKD-QSQNALKFLK 112 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCC-ChHHHHHHHH
Confidence 35778888899888999999999988764 48899998543 2344444443
No 129
>PRK08862 short chain dehydrogenase; Provisional
Probab=22.87 E-value=88 Score=25.59 Aligned_cols=44 Identities=9% Similarity=-0.067 Sum_probs=26.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-.++|.||++.+++.- ... |.+. +..|+.++|+.-.-++..+.+
T Consensus 6 k~~lVtGas~GIG~ai-a~~---la~~-----G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTI-SCH---FARL-----GATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHH-HHH---HHHC-----CCEEEEEcCCHHHHHHHHHHH
Confidence 4789999999987542 222 2233 457888888754334444444
No 130
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=22.60 E-value=93 Score=24.43 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=20.6
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
++|.||+|-|+.... . .|.++| .+|++++|+.
T Consensus 1 vlItG~~g~iG~~la-~---~l~~~G-----~~v~~~~r~~ 32 (239)
T TIGR01830 1 ALVTGASRGIGRAIA-L---KLAKEG-----AKVIITYRSS 32 (239)
T ss_pred CEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCCc
Confidence 478999998875432 2 223333 5788888876
No 131
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.48 E-value=1.5e+02 Score=18.04 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhccCCCCCHHHHHHHHhc
Q 043082 143 DEELRNVISKTLTYRIDKKENCEDKMDQFLKR 174 (179)
Q Consensus 143 dEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~r 174 (179)
|++|...|.++... +++.+.+..|++.
T Consensus 2 D~EW~~Li~eA~~~-----Gls~eeir~FL~~ 28 (30)
T PF08671_consen 2 DEEWVELIKEAKES-----GLSKEEIREFLEF 28 (30)
T ss_dssp -HHHHHHHHHHHHT-----T--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 67899998888764 4566778888764
No 132
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.40 E-value=1.7e+02 Score=23.78 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=24.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
-.++|.||+|-|+... ...| .+. +..|++++|++-..+++
T Consensus 6 ~~vlItG~s~~iG~~i-a~~l---~~~-----G~~V~~~~r~~~~~~~~ 45 (263)
T PRK09072 6 KRVLLTGASGGIGQAL-AEAL---AAA-----GARLLLVGRNAEKLEAL 45 (263)
T ss_pred CEEEEECCCchHHHHH-HHHH---HHC-----CCEEEEEECCHHHHHHH
Confidence 3689999999888532 2222 223 35788888875333333
No 133
>PRK06841 short chain dehydrogenase; Provisional
Probab=22.32 E-value=2.6e+02 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=22.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||+|-++... ... |.+.| .+|++++|+.
T Consensus 16 k~vlItGas~~IG~~l-a~~---l~~~G-----~~Vi~~~r~~ 49 (255)
T PRK06841 16 KVAVVTGGASGIGHAI-AEL---FAAKG-----ARVALLDRSE 49 (255)
T ss_pred CEEEEECCCChHHHHH-HHH---HHHCC-----CEEEEEeCCH
Confidence 4789999999988543 222 22333 5788888865
No 134
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.28 E-value=88 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=25.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEE 145 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEe 145 (179)
-.++|.||+|-++..-. . .|... +..|++++|++-..++
T Consensus 6 ~~vlItGa~g~iG~~~a-~---~l~~~-----G~~V~~~~r~~~~~~~ 44 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVA-Y---FALKE-----GAQVCINSRNENKLKR 44 (238)
T ss_pred cEEEEECCCchHHHHHH-H---HHHHC-----CCEEEEEeCCHHHHHH
Confidence 47899999998885432 1 22233 4579999997643333
No 135
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.03 E-value=93 Score=25.13 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=22.6
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKL 141 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~ 141 (179)
-.++|.||||.++..-. ..|.+.| .+++..+|+.-
T Consensus 10 k~~lItGas~giG~~ia----~~L~~~G-----~~vvl~~r~~~ 44 (254)
T PRK08085 10 KNILITGSAQGIGFLLA----TGLAEYG-----AEIIINDITAE 44 (254)
T ss_pred CEEEEECCCChHHHHHH----HHHHHcC-----CEEEEEcCCHH
Confidence 46899999999986432 2233334 46777777643
No 136
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=21.96 E-value=1.5e+02 Score=23.81 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.5
Q ss_pred EEEccchhhhhhhhHHHHHHHHHcCC-CCCCceEEEEeCCCC
Q 043082 101 TVVGASGDLAKKKIFPALFALYYEDC-LPEDFTVFGYARTKL 141 (179)
Q Consensus 101 VIFGATGDLAkRKL~PALf~L~~~gl-LP~~frIIG~aRs~~ 141 (179)
+||+.++.+|.. ++-.|...|. +|+++.|+|++..++
T Consensus 180 ai~~~~d~~a~g----~~~~l~~~g~~ip~di~v~g~d~~~~ 217 (268)
T cd06270 180 AVFCANDEMAAG----AISALREHGISVPQDVSIIGFDDVLL 217 (268)
T ss_pred EEEEcCcHHHHH----HHHHHHHcCCCCCCceeEEEecCchH
Confidence 677777776633 3344445565 799999999998654
No 137
>PRK06182 short chain dehydrogenase; Validated
Probab=21.93 E-value=64 Score=26.51 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=22.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||-+++-.. . .|... +..|++++|+.
T Consensus 4 k~vlItGasggiG~~la-~---~l~~~-----G~~V~~~~r~~ 37 (273)
T PRK06182 4 KVALVTGASSGIGKATA-R---RLAAQ-----GYTVYGAARRV 37 (273)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHC-----CCEEEEEeCCH
Confidence 36899999999986522 1 22233 46788888864
No 138
>PRK06101 short chain dehydrogenase; Provisional
Probab=21.49 E-value=80 Score=25.46 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
+++|.||||-++... ...+. .++.+|+.++|+.
T Consensus 3 ~vlItGas~giG~~l-----a~~L~----~~G~~V~~~~r~~ 35 (240)
T PRK06101 3 AVLITGATSGIGKQL-----ALDYA----KQGWQVIACGRNQ 35 (240)
T ss_pred EEEEEcCCcHHHHHH-----HHHHH----hCCCEEEEEECCH
Confidence 578999999988432 22221 2346788888864
No 139
>PRK05629 hypothetical protein; Validated
Probab=21.47 E-value=4.5e+02 Score=22.81 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=40.9
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhcC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLTYRIDKKENCEDKMDQFLKRC 175 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~~~~~~~~~d~e~~e~Fl~rl 175 (179)
.+.+||..+ |+..++|++.+|- +.| .++-+. +....++..+|.+.++..+ ..++.+..+.|++++
T Consensus 94 ~~~Lil~~~-~~~~~kk~~K~l~---k~~------~~ve~~--~~~~~~l~~wi~~~~~~~g--~~i~~~A~~~L~~~~ 158 (318)
T PRK05629 94 GIYLIIMHS-GGGRTKSMVPKLE---KIA------VVHEAA--KLKPRERPGWVTQEFKNHG--VRPTPDVVHALLEGV 158 (318)
T ss_pred CeEEEEEcC-CcchhhHHHHHHH---hcc------eEeeCC--CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Confidence 345565554 4456677766542 233 233322 4668899999999888765 256777887777665
No 140
>PRK08267 short chain dehydrogenase; Provisional
Probab=21.44 E-value=78 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.3
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEEL 146 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEef 146 (179)
.++|.||||-|+....- .|.+.| .+|+.++|+.-..+++
T Consensus 3 ~vlItGasg~iG~~la~----~l~~~G-----~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 3 SIFITGAASGIGRATAL----LFAAEG-----WRVGAYDINEAGLAAL 41 (260)
T ss_pred EEEEeCCCchHHHHHHH----HHHHCC-----CeEEEEeCCHHHHHHH
Confidence 57999999998865432 223334 4678888865333443
No 141
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=21.34 E-value=1.3e+02 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYART 139 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs 139 (179)
.++|.||||-+++... -.|...| ..|+++.|.
T Consensus 2 ~vlVtGatG~iG~~l~----~~L~~~g-----~~V~~~~~~ 33 (338)
T PRK10675 2 RVLVTGGSGYIGSHTC----VQLLQNG-----HDVVILDNL 33 (338)
T ss_pred eEEEECCCChHHHHHH----HHHHHCC-----CeEEEEecC
Confidence 4789999999886543 2233333 567777654
No 142
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=21.33 E-value=41 Score=31.19 Aligned_cols=19 Identities=42% Similarity=0.891 Sum_probs=14.9
Q ss_pred CeEEEEEccch--------hhhhhhhHHH
Q 043082 97 TLSITVVGASG--------DLAKKKIFPA 117 (179)
Q Consensus 97 p~slVIFGATG--------DLAkRKL~PA 117 (179)
.-.+||.|+|| |||.| ||+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~r--f~~ 33 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATR--FPG 33 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHh--CCc
Confidence 46799999999 77777 554
No 143
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.28 E-value=1.2e+02 Score=24.47 Aligned_cols=46 Identities=17% Similarity=0.010 Sum_probs=28.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVIS 151 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~ 151 (179)
.-.++|.||+|-++.--. -.|... +.+|+.++|+.-..++..+.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a----~~l~~~-----G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIA----RAFARE-----GAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHC-----CCEEEEEeCCHHHHHHHHHHHH
Confidence 346899999998875321 122233 3578888886544455544443
No 144
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=21.00 E-value=2e+02 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=22.9
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|.||+|-|+.. +...|. +. +.+|++.+|+.
T Consensus 4 ~vlItG~s~~iG~~-la~~l~---~~-----g~~vi~~~r~~ 36 (245)
T PRK12824 4 IALVTGAKRGIGSA-IARELL---ND-----GYRVIATYFSG 36 (245)
T ss_pred EEEEeCCCchHHHH-HHHHHH---Hc-----CCEEEEEeCCc
Confidence 68999999999876 333332 22 35788888875
No 145
>PF13289 SIR2_2: SIR2-like domain
Probab=20.97 E-value=1.7e+02 Score=21.36 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 043082 115 FPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLT 155 (179)
Q Consensus 115 ~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~ 155 (179)
.|.+....+.-+....+-+||++ +.|..++..++..+.
T Consensus 73 ~~~~~~~l~~~l~~~~~lfiGys---~~D~~i~~~l~~~~~ 110 (143)
T PF13289_consen 73 NPWFPNFLRSLLRSKTLLFIGYS---FNDPDIRQLLRSALE 110 (143)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEC---CCCHHHHHHHHHHHH
Confidence 45555665555556678999999 455566666655554
No 146
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=20.91 E-value=1.1e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=26.4
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-+++|.||+|-+++ ++...+. ..+.+|+..+|+.-..++..+.+
T Consensus 11 k~~lItGa~~~iG~-----~ia~~l~----~~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 11 KIALITGASYGIGF-----AIAKAYA----KAGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred CEEEEeCCCchHHH-----HHHHHHH----HCCCeEEEEeCCHHHHHHHHHHH
Confidence 47999999998884 2222222 22456777788764444444433
No 147
>PRK07904 short chain dehydrogenase; Provisional
Probab=20.77 E-value=1.9e+02 Score=23.80 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=29.1
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCC-HHHHHHHHH
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT-DEELRNVIS 151 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~t-dEefr~~V~ 151 (179)
+-.++|.||||-+++-.. ..|.+.| ...|+.++|+.-. .++..+.+.
T Consensus 8 ~~~vlItGas~giG~~la----~~l~~~g----g~~V~~~~r~~~~~~~~~~~~l~ 55 (253)
T PRK07904 8 PQTILLLGGTSEIGLAIC----ERYLKNA----PARVVLAALPDDPRRDAAVAQMK 55 (253)
T ss_pred CcEEEEEcCCcHHHHHHH----HHHHhcC----CCeEEEEeCCcchhHHHHHHHHH
Confidence 457999999999987521 1222332 3678888887654 454444443
No 148
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.60 E-value=2.3e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=23.0
Q ss_pred CeEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 97 TLSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 97 p~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.-.++|.||+|-++.... ..| .+.| .+|+.++|+.
T Consensus 10 ~k~vlVtGas~giG~~ia-~~l---~~~G-----~~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMA-KEL---ARAG-----AKVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHH-HHH---HHCC-----CEEEEEeCCH
Confidence 357899999999885432 222 2344 4678888864
No 149
>COG3596 Predicted GTPase [General function prediction only]
Probab=20.55 E-value=1e+02 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.8
Q ss_pred CCCCeEEEEEccchhhhhhhhHHHHH
Q 043082 94 SGSTLSITVVGASGDLAKKKIFPALF 119 (179)
Q Consensus 94 ~~~p~slVIFGATGDLAkRKL~PALf 119 (179)
...|+.+.|.|+|| ..|--|+-|||
T Consensus 36 ~~~pvnvLi~G~TG-~GKSSliNALF 60 (296)
T COG3596 36 EKEPVNVLLMGATG-AGKSSLINALF 60 (296)
T ss_pred ccCceeEEEecCCC-CcHHHHHHHHH
Confidence 34588899999999 68999999999
No 150
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=20.50 E-value=89 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=22.3
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||.++.--. - .|.+ ++.+|+.++|+.
T Consensus 6 k~vlItGas~gIG~~ia-~---~l~~-----~G~~V~~~~r~~ 39 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIV-D---RFVA-----EGARVAVLDKSA 39 (262)
T ss_pred cEEEEECCCChHHHHHH-H---HHHH-----CCCEEEEEeCCH
Confidence 46899999999884322 1 2223 346788888865
No 151
>PRK05717 oxidoreductase; Validated
Probab=20.48 E-value=2.2e+02 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=22.0
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-+++|.||+|-+++-.. ..|.+.| ..|+.++|+.
T Consensus 11 k~vlItG~sg~IG~~~a----~~l~~~g-----~~v~~~~~~~ 44 (255)
T PRK05717 11 RVALVTGAARGIGLGIA----AWLIAEG-----WQVVLADLDR 44 (255)
T ss_pred CEEEEeCCcchHHHHHH----HHHHHcC-----CEEEEEcCCH
Confidence 46899999999986433 2233344 4567776654
No 152
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=20.44 E-value=94 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=22.7
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
-.++|.||||.++.-- .- .|...| .+|+.++|+.
T Consensus 7 k~vlVtGas~gIG~~i-a~---~l~~~G-----~~V~~~~r~~ 40 (263)
T PRK06200 7 QVALITGGGSGIGRAL-VE---RFLAEG-----ARVAVLERSA 40 (263)
T ss_pred CEEEEeCCCchHHHHH-HH---HHHHCC-----CEEEEEeCCH
Confidence 4689999999998542 22 222334 5688888875
No 153
>PRK06482 short chain dehydrogenase; Provisional
Probab=20.40 E-value=82 Score=25.86 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=21.7
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCC
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTK 140 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~ 140 (179)
.++|.||||-++.... . .|...| .+|+.+.|+.
T Consensus 4 ~vlVtGasg~IG~~la-~---~L~~~g-----~~v~~~~r~~ 36 (276)
T PRK06482 4 TWFITGASSGFGRGMT-E---RLLARG-----DRVAATVRRP 36 (276)
T ss_pred EEEEecCCCHHHHHHH-H---HHHHCC-----CEEEEEeCCH
Confidence 5789999999987633 2 223334 4677777764
No 154
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=20.37 E-value=2.1e+02 Score=25.57 Aligned_cols=44 Identities=36% Similarity=0.620 Sum_probs=29.6
Q ss_pred EEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCC--H-HHHHHHHHHH
Q 043082 100 ITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLT--D-EELRNVISKT 153 (179)
Q Consensus 100 lVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~t--d-Eefr~~V~ea 153 (179)
+.|+|++|=|+.- |.+. ++..+.|++.+|.+++ + +..++.+++.
T Consensus 3 iLi~G~~GqLG~~--------L~~~--l~~~~~v~a~~~~~~Ditd~~~v~~~i~~~ 49 (281)
T COG1091 3 ILITGANGQLGTE--------LRRA--LPGEFEVIATDRAELDITDPDAVLEVIRET 49 (281)
T ss_pred EEEEcCCChHHHH--------HHHH--hCCCceEEeccCccccccChHHHHHHHHhh
Confidence 8999999999852 2222 3357899999988754 3 4455555544
No 155
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=20.36 E-value=1.3e+02 Score=17.69 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 116 PALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 116 PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
..|+++.+.|.+|. .+. +-++..++.+++.+.+
T Consensus 15 ~tl~~~~~~g~~~~-~~~-~~~~~~~~~~ei~~~~ 47 (49)
T cd04762 15 STLRRWVKEGKLKA-IRT-PGGHRRFPEEDLERLL 47 (49)
T ss_pred HHHHHHHHcCCCCc-eeC-CCCceecCHHHHHHHH
Confidence 57889999999974 332 2366678888877653
No 156
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.32 E-value=2.8e+02 Score=25.93 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=30.8
Q ss_pred EEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHH
Q 043082 99 SITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISK 152 (179)
Q Consensus 99 slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~e 152 (179)
.++|+|+||=.+..-| -.+ ...|+.|.|+|.+-. -..+.+.+.+++
T Consensus 3 ~VaILGsTGSIG~~tL-~vi------~~~p~~f~VvaLaa~-~n~~~l~~q~~~ 48 (385)
T PRK05447 3 RITILGSTGSIGTQTL-DVI------RRNPDRFRVVALSAG-KNVELLAEQARE 48 (385)
T ss_pred eEEEEcCChHHHHHHH-HHH------HhCccccEEEEEEcC-CCHHHHHHHHHH
Confidence 5899999999987733 332 235789999999842 234555555444
No 157
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=20.28 E-value=3.3e+02 Score=22.88 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=31.9
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHc-CCCCCCceEE-EEeC-CCCCHHHHHHHHHHHh
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYE-DCLPEDFTVF-GYAR-TKLTDEELRNVISKTL 154 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~-glLP~~frII-G~aR-s~~tdEefr~~V~eaL 154 (179)
..|||==+|=---.+.++|.|+....+ |.-++++.|| +.|- +.+|.||+++++-+.+
T Consensus 57 V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr~~t~ee~~~~lG~~i 116 (204)
T PF09861_consen 57 VAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIIIALGTHRPMTEEELKQILGEEI 116 (204)
T ss_dssp EEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS----HHHHHHHH-HHH
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEEeCCCCCCCCHHHHHHHhhhhh
Confidence 444443344445668999999988887 5555665555 6664 7799999999988654
No 158
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=20.27 E-value=2.5e+02 Score=23.08 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=29.6
Q ss_pred EEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 043082 102 VVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVISKTLT 155 (179)
Q Consensus 102 IFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V~eaL~ 155 (179)
|-||||=|+...|- .|.+.+. ..+|++..|.. +.++-.+++.+.+.
T Consensus 1 lTGaTGflG~~ll~----~Ll~~~~---~~~I~cLvR~~-~~~~~~~rl~~~l~ 46 (249)
T PF07993_consen 1 LTGATGFLGSHLLE----ELLRQPP---DVKIYCLVRAS-SSQSALERLKDALK 46 (249)
T ss_dssp EE-TTSHHHHHHHH----HHHHHS----TTEEEEEE-SS-SHHHHHHHHHGGG-
T ss_pred CcCCCcHHHHHHHH----HHHcCCC---CcEEEEEEeCc-ccccchhhhhhhcc
Confidence 56999999987754 6666652 23999999965 45566667765554
No 159
>PRK07109 short chain dehydrogenase; Provisional
Probab=20.15 E-value=1.2e+02 Score=26.45 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=27.5
Q ss_pred eEEEEEccchhhhhhhhHHHHHHHHHcCCCCCCceEEEEeCCCCCHHHHHHHH
Q 043082 98 LSITVVGASGDLAKKKIFPALFALYYEDCLPEDFTVFGYARTKLTDEELRNVI 150 (179)
Q Consensus 98 ~slVIFGATGDLAkRKL~PALf~L~~~glLP~~frIIG~aRs~~tdEefr~~V 150 (179)
-+++|.||||-+++... -.|.+.| .+|+.++|++-..++..+.+
T Consensus 9 k~vlITGas~gIG~~la----~~la~~G-----~~Vvl~~R~~~~l~~~~~~l 52 (334)
T PRK07109 9 QVVVITGASAGVGRATA----RAFARRG-----AKVVLLARGEEGLEALAAEI 52 (334)
T ss_pred CEEEEECCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHHHH
Confidence 47999999999986521 1223334 56888888754444444444
Done!