Query 043083
Match_columns 468
No_of_seqs 371 out of 2745
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.5E-64 1.8E-68 525.0 31.7 442 4-462 3-475 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5E-47 1.1E-51 360.5 12.6 269 158-435 1-286 (287)
3 PLN03210 Resistant to P. syrin 100.0 4.4E-35 9.5E-40 323.8 23.2 281 151-459 182-484 (1153)
4 PRK04841 transcriptional regul 99.5 5.5E-13 1.2E-17 146.8 22.8 266 153-458 14-309 (903)
5 TIGR03015 pepcterm_ATPase puta 99.4 1.2E-11 2.7E-16 116.2 20.5 184 179-366 42-242 (269)
6 PF01637 Arch_ATPase: Archaeal 99.4 9.4E-13 2E-17 120.9 10.6 195 155-361 1-233 (234)
7 PRK00411 cdc6 cell division co 99.4 9.2E-12 2E-16 123.7 18.3 301 151-460 28-359 (394)
8 PRK00080 ruvB Holliday junctio 99.4 5E-12 1.1E-16 122.0 13.5 261 153-460 25-311 (328)
9 TIGR02928 orc1/cdc6 family rep 99.4 6.6E-11 1.4E-15 116.4 21.6 302 151-460 13-351 (365)
10 TIGR00635 ruvB Holliday juncti 99.4 7.3E-12 1.6E-16 119.9 13.2 273 153-459 4-289 (305)
11 PF05729 NACHT: NACHT domain 99.3 7.7E-11 1.7E-15 102.0 12.3 143 181-329 1-163 (166)
12 COG2909 MalT ATP-dependent tra 99.2 6.6E-10 1.4E-14 113.3 19.5 264 162-458 24-315 (894)
13 COG3899 Predicted ATPase [Gene 99.1 5.5E-09 1.2E-13 111.9 18.8 258 154-425 1-333 (849)
14 PRK06893 DNA replication initi 99.0 5E-09 1.1E-13 95.5 13.0 156 180-366 39-207 (229)
15 PTZ00112 origin recognition co 99.0 2E-08 4.3E-13 103.6 16.6 298 152-460 754-1087(1164)
16 PF13401 AAA_22: AAA domain; P 99.0 1.5E-09 3.3E-14 89.9 7.2 118 179-298 3-125 (131)
17 COG2256 MGS1 ATPase related to 99.0 6.8E-09 1.5E-13 97.6 11.6 153 178-357 46-207 (436)
18 PRK13342 recombination factor 98.9 1.1E-08 2.5E-13 101.7 13.5 178 153-364 12-198 (413)
19 PTZ00202 tuzin; Provisional 98.9 1.4E-07 2.9E-12 90.7 18.0 171 147-329 256-434 (550)
20 TIGR03420 DnaA_homol_Hda DnaA 98.9 5E-08 1.1E-12 89.1 14.2 170 160-366 24-205 (226)
21 PF05496 RuvB_N: Holliday junc 98.8 1.5E-08 3.3E-13 89.0 9.4 182 153-367 24-226 (233)
22 PRK05564 DNA polymerase III su 98.8 1.2E-07 2.6E-12 90.9 16.4 178 154-361 5-189 (313)
23 PF13191 AAA_16: AAA ATPase do 98.8 6.7E-09 1.4E-13 91.6 7.0 47 154-203 1-47 (185)
24 COG1474 CDC6 Cdc6-related prot 98.8 3.3E-07 7.2E-12 88.7 19.2 205 153-362 17-238 (366)
25 PRK14961 DNA polymerase III su 98.8 2E-07 4.4E-12 91.1 17.2 199 153-363 16-221 (363)
26 PRK12402 replication factor C 98.8 1.6E-07 3.5E-12 91.3 15.6 199 153-364 15-228 (337)
27 PRK14949 DNA polymerase III su 98.8 4.2E-08 9E-13 102.6 11.7 199 153-363 16-221 (944)
28 PRK14963 DNA polymerase III su 98.8 5E-08 1.1E-12 98.4 11.9 198 153-360 14-215 (504)
29 PRK04195 replication factor C 98.8 5E-07 1.1E-11 91.8 18.9 243 153-433 14-271 (482)
30 PRK07003 DNA polymerase III su 98.8 2.3E-07 5E-12 95.4 15.9 202 153-366 16-225 (830)
31 PF13173 AAA_14: AAA domain 98.8 4.9E-08 1.1E-12 80.4 9.2 119 181-321 3-127 (128)
32 TIGR02903 spore_lon_C ATP-depe 98.7 4.4E-06 9.5E-11 86.9 25.2 202 153-365 154-398 (615)
33 PRK14960 DNA polymerase III su 98.7 2.1E-07 4.6E-12 94.5 15.0 197 153-362 15-219 (702)
34 cd00009 AAA The AAA+ (ATPases 98.7 8.1E-08 1.8E-12 80.9 10.3 125 156-300 1-131 (151)
35 PRK12323 DNA polymerase III su 98.7 3E-07 6.5E-12 93.3 14.8 197 153-362 16-225 (700)
36 PRK09112 DNA polymerase III su 98.7 4.3E-07 9.4E-12 87.6 14.6 197 152-363 22-241 (351)
37 PRK06645 DNA polymerase III su 98.7 7.4E-07 1.6E-11 89.7 16.7 200 153-361 21-228 (507)
38 PRK00440 rfc replication facto 98.7 7.5E-07 1.6E-11 85.9 16.4 184 153-363 17-204 (319)
39 PRK14957 DNA polymerase III su 98.7 7.6E-07 1.6E-11 90.2 16.8 185 153-364 16-223 (546)
40 PRK07994 DNA polymerase III su 98.6 6.9E-07 1.5E-11 91.9 15.7 195 153-363 16-221 (647)
41 PRK08727 hypothetical protein; 98.6 1.4E-06 3E-11 79.7 15.9 151 181-362 42-204 (233)
42 TIGR02397 dnaX_nterm DNA polym 98.6 1.6E-06 3.4E-11 85.0 17.4 183 153-363 14-219 (355)
43 PRK08084 DNA replication initi 98.6 1.6E-06 3.5E-11 79.3 16.2 156 180-366 45-213 (235)
44 PLN03025 replication factor C 98.6 7.4E-07 1.6E-11 85.7 14.5 186 153-363 13-201 (319)
45 PRK13341 recombination factor 98.6 4.9E-07 1.1E-11 94.9 14.0 175 153-360 28-215 (725)
46 PRK07471 DNA polymerase III su 98.6 2.1E-06 4.6E-11 83.3 17.3 192 153-363 19-239 (365)
47 PRK08691 DNA polymerase III su 98.6 8.6E-07 1.9E-11 91.0 15.1 199 153-363 16-221 (709)
48 PRK08903 DnaA regulatory inact 98.6 1.2E-06 2.6E-11 80.0 14.7 154 179-367 41-204 (227)
49 PRK14956 DNA polymerase III su 98.6 3.9E-07 8.5E-12 90.0 12.0 199 153-363 18-223 (484)
50 cd01128 rho_factor Transcripti 98.6 1.1E-07 2.4E-12 87.0 7.7 91 179-270 15-114 (249)
51 TIGR00678 holB DNA polymerase 98.6 2.1E-06 4.4E-11 76.0 15.6 90 258-357 95-186 (188)
52 KOG2028 ATPase related to the 98.6 6.9E-07 1.5E-11 83.0 12.4 158 178-357 160-331 (554)
53 PRK09087 hypothetical protein; 98.6 9.9E-07 2.1E-11 80.0 13.4 146 180-366 44-199 (226)
54 PRK14964 DNA polymerase III su 98.6 2.4E-06 5.2E-11 85.4 17.2 183 153-362 13-217 (491)
55 PRK14962 DNA polymerase III su 98.6 2E-06 4.2E-11 86.3 16.6 187 153-366 14-223 (472)
56 PRK14951 DNA polymerase III su 98.6 1.7E-06 3.6E-11 89.0 16.3 201 153-362 16-225 (618)
57 PF14516 AAA_35: AAA-like doma 98.6 6.1E-06 1.3E-10 79.5 19.1 202 152-370 10-247 (331)
58 PRK14958 DNA polymerase III su 98.6 1.4E-06 3E-11 88.4 15.1 184 153-363 16-221 (509)
59 PF05621 TniB: Bacterial TniB 98.6 3.2E-06 6.9E-11 78.1 15.9 199 161-362 45-261 (302)
60 PRK05642 DNA replication initi 98.6 2.7E-06 6E-11 77.7 15.3 156 180-366 45-212 (234)
61 PRK05896 DNA polymerase III su 98.5 2.9E-06 6.3E-11 86.2 16.2 196 153-364 16-223 (605)
62 PF00308 Bac_DnaA: Bacterial d 98.5 2.7E-06 5.9E-11 76.8 14.6 165 179-365 33-211 (219)
63 PRK07940 DNA polymerase III su 98.5 2.7E-06 5.9E-11 83.3 15.6 183 154-362 6-213 (394)
64 PRK14969 DNA polymerase III su 98.5 2.2E-06 4.7E-11 87.5 15.1 182 153-361 16-219 (527)
65 PRK07764 DNA polymerase III su 98.5 3.3E-06 7.1E-11 89.9 16.4 196 153-361 15-220 (824)
66 PRK14087 dnaA chromosomal repl 98.5 2.7E-06 5.8E-11 85.2 14.9 171 180-366 141-323 (450)
67 PRK09111 DNA polymerase III su 98.5 4.2E-06 9.2E-11 86.1 16.7 198 153-363 24-234 (598)
68 PRK14955 DNA polymerase III su 98.5 2.3E-06 5.1E-11 84.6 13.5 196 153-361 16-227 (397)
69 TIGR01242 26Sp45 26S proteasom 98.5 2.6E-06 5.6E-11 83.5 13.5 180 152-356 121-328 (364)
70 PRK14950 DNA polymerase III su 98.4 5.5E-06 1.2E-10 86.0 16.2 197 153-364 16-223 (585)
71 PRK14952 DNA polymerase III su 98.4 1.1E-05 2.5E-10 82.6 18.0 198 153-366 13-224 (584)
72 PRK09376 rho transcription ter 98.4 7E-07 1.5E-11 85.4 7.9 101 164-270 158-267 (416)
73 PRK14970 DNA polymerase III su 98.4 1.1E-05 2.5E-10 79.2 16.5 182 153-361 17-208 (367)
74 TIGR03345 VI_ClpV1 type VI sec 98.4 5.1E-06 1.1E-10 89.5 14.9 155 153-329 187-363 (852)
75 PRK14959 DNA polymerase III su 98.4 1.2E-05 2.6E-10 82.2 16.3 198 153-366 16-225 (624)
76 PRK14953 DNA polymerase III su 98.3 2.7E-05 5.8E-10 78.6 17.7 184 153-363 16-221 (486)
77 PRK06620 hypothetical protein; 98.3 1.7E-05 3.7E-10 71.3 14.6 142 181-366 45-193 (214)
78 COG3903 Predicted ATPase [Gene 98.3 5.6E-07 1.2E-11 85.5 5.0 227 179-417 13-258 (414)
79 PHA02544 44 clamp loader, smal 98.3 8.6E-06 1.9E-10 78.4 13.3 148 153-327 21-171 (316)
80 KOG2227 Pre-initiation complex 98.3 2.2E-05 4.8E-10 75.7 15.4 178 151-330 148-339 (529)
81 PRK07133 DNA polymerase III su 98.3 5.5E-06 1.2E-10 86.0 12.1 193 153-362 18-219 (725)
82 TIGR00767 rho transcription te 98.3 2.3E-06 5E-11 82.3 8.2 91 179-270 167-266 (415)
83 TIGR00362 DnaA chromosomal rep 98.3 4E-05 8.7E-10 76.3 17.3 161 180-362 136-310 (405)
84 PRK14954 DNA polymerase III su 98.3 4.1E-05 8.9E-10 79.1 17.6 198 153-359 16-225 (620)
85 COG2255 RuvB Holliday junction 98.3 2.2E-05 4.7E-10 71.0 13.5 182 153-367 26-228 (332)
86 TIGR02639 ClpA ATP-dependent C 98.3 1.1E-05 2.5E-10 86.1 13.6 156 153-329 182-358 (731)
87 PRK14948 DNA polymerase III su 98.3 4.8E-05 1E-09 79.0 17.7 198 153-364 16-224 (620)
88 PF05673 DUF815: Protein of un 98.3 2E-05 4.2E-10 70.7 12.7 125 149-300 23-152 (249)
89 PRK03992 proteasome-activating 98.2 1.3E-05 2.8E-10 79.0 12.5 178 153-355 131-336 (389)
90 PRK08451 DNA polymerase III su 98.2 7.8E-05 1.7E-09 75.4 18.0 181 153-363 14-219 (535)
91 PRK00149 dnaA chromosomal repl 98.2 4.9E-05 1.1E-09 76.7 16.7 161 180-362 148-322 (450)
92 PRK14971 DNA polymerase III su 98.2 4.5E-05 9.7E-10 79.2 16.7 181 153-361 17-221 (614)
93 PRK14088 dnaA chromosomal repl 98.2 2.9E-05 6.3E-10 77.7 14.7 160 180-360 130-303 (440)
94 CHL00095 clpC Clp protease ATP 98.2 1.5E-05 3.2E-10 86.2 13.5 155 153-328 179-353 (821)
95 TIGR02881 spore_V_K stage V sp 98.2 2.2E-05 4.7E-10 73.2 12.9 161 154-330 7-192 (261)
96 CHL00181 cbbX CbbX; Provisiona 98.2 8.2E-05 1.8E-09 70.0 16.8 135 180-330 59-210 (287)
97 PRK12422 chromosomal replicati 98.2 4.3E-05 9.4E-10 76.3 15.7 154 180-355 141-306 (445)
98 KOG2543 Origin recognition com 98.2 5.7E-05 1.2E-09 71.1 15.2 205 152-365 5-229 (438)
99 PRK06305 DNA polymerase III su 98.2 5.4E-05 1.2E-09 75.9 16.3 182 153-362 17-223 (451)
100 PRK11331 5-methylcytosine-spec 98.2 5E-06 1.1E-10 81.4 8.6 120 153-284 175-298 (459)
101 PF00004 AAA: ATPase family as 98.2 5.8E-06 1.2E-10 68.3 8.0 97 183-299 1-112 (132)
102 PRK14086 dnaA chromosomal repl 98.2 5E-05 1.1E-09 77.5 15.4 159 181-361 315-487 (617)
103 PRK05707 DNA polymerase III su 98.2 6.4E-05 1.4E-09 72.0 15.4 97 258-362 105-203 (328)
104 PRK14965 DNA polymerase III su 98.2 7.3E-05 1.6E-09 77.4 16.8 196 153-364 16-223 (576)
105 PRK06647 DNA polymerase III su 98.2 0.00011 2.4E-09 75.4 17.9 198 153-362 16-220 (563)
106 TIGR02880 cbbX_cfxQ probable R 98.1 4.1E-05 8.8E-10 72.1 13.1 133 182-330 60-209 (284)
107 PRK05563 DNA polymerase III su 98.1 0.00016 3.5E-09 74.5 18.0 194 153-362 16-220 (559)
108 COG3267 ExeA Type II secretory 98.1 0.00026 5.6E-09 63.4 16.5 181 179-364 50-247 (269)
109 PRK07399 DNA polymerase III su 98.1 0.00018 3.8E-09 68.6 16.0 197 154-364 5-223 (314)
110 KOG0989 Replication factor C, 98.1 5.9E-05 1.3E-09 69.0 11.6 190 153-363 36-231 (346)
111 PRK11034 clpA ATP-dependent Cl 98.0 6.7E-05 1.4E-09 79.5 13.2 156 153-329 186-362 (758)
112 PRK08116 hypothetical protein; 98.0 2.5E-05 5.4E-10 72.8 8.7 104 181-299 115-221 (268)
113 TIGR03346 chaperone_ClpB ATP-d 98.0 7.2E-05 1.6E-09 81.3 12.9 155 153-329 173-349 (852)
114 PRK10865 protein disaggregatio 98.0 0.00013 2.9E-09 79.0 14.8 155 153-329 178-354 (857)
115 COG0593 DnaA ATPase involved i 98.0 0.00016 3.4E-09 70.3 13.7 134 179-331 112-259 (408)
116 TIGR03689 pup_AAA proteasome A 97.9 0.00011 2.3E-09 74.1 12.3 167 153-329 182-378 (512)
117 TIGR00763 lon ATP-dependent pr 97.9 0.00055 1.2E-08 73.8 18.4 165 153-329 320-505 (775)
118 smart00382 AAA ATPases associa 97.9 7.6E-05 1.6E-09 62.0 9.4 88 181-272 3-91 (148)
119 COG1373 Predicted ATPase (AAA+ 97.9 0.00019 4.1E-09 70.9 13.1 117 182-323 39-161 (398)
120 PRK08769 DNA polymerase III su 97.9 0.00067 1.5E-08 64.5 16.0 96 258-363 112-209 (319)
121 COG0466 Lon ATP-dependent Lon 97.9 7.1E-05 1.5E-09 76.0 9.7 166 152-329 322-508 (782)
122 PRK10787 DNA-binding ATP-depen 97.9 0.00077 1.7E-08 72.1 17.9 165 153-329 322-506 (784)
123 PF13177 DNA_pol3_delta2: DNA 97.8 0.00028 6.1E-09 60.5 11.7 136 159-316 3-161 (162)
124 PRK06871 DNA polymerase III su 97.8 0.00016 3.5E-09 68.8 11.1 179 163-360 12-201 (325)
125 PTZ00454 26S protease regulato 97.8 0.00057 1.2E-08 67.3 15.1 179 153-356 145-351 (398)
126 TIGR00602 rad24 checkpoint pro 97.8 0.00031 6.6E-09 72.8 13.6 209 153-366 84-327 (637)
127 PTZ00361 26 proteosome regulat 97.8 0.00016 3.4E-09 71.8 10.8 158 153-330 183-368 (438)
128 PRK10536 hypothetical protein; 97.8 0.00016 3.5E-09 65.6 10.0 137 153-301 55-215 (262)
129 PRK08058 DNA polymerase III su 97.8 0.0004 8.7E-09 66.9 13.2 164 155-327 7-180 (329)
130 PRK08181 transposase; Validate 97.8 7.9E-05 1.7E-09 69.1 7.9 101 181-299 107-209 (269)
131 PF10443 RNA12: RNA12 protein; 97.8 0.0021 4.6E-08 62.4 17.7 200 158-370 1-286 (431)
132 PRK06090 DNA polymerase III su 97.8 0.0013 2.7E-08 62.6 16.1 93 258-362 107-201 (319)
133 CHL00176 ftsH cell division pr 97.7 0.00055 1.2E-08 71.4 14.2 184 153-361 183-394 (638)
134 COG0542 clpA ATP-binding subun 97.7 0.00098 2.1E-08 69.7 15.9 122 154-286 492-620 (786)
135 PF04665 Pox_A32: Poxvirus A32 97.7 7.2E-05 1.6E-09 67.6 6.7 37 180-218 13-49 (241)
136 PRK12377 putative replication 97.7 0.00011 2.4E-09 67.3 7.9 103 180-299 101-206 (248)
137 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0016 3.4E-08 60.7 15.8 111 182-299 23-161 (262)
138 KOG2004 Mitochondrial ATP-depe 97.7 0.0026 5.7E-08 64.8 17.8 166 152-329 410-596 (906)
139 PRK10865 protein disaggregatio 97.7 0.00033 7.2E-09 75.9 12.6 138 153-298 568-720 (857)
140 TIGR01241 FtsH_fam ATP-depende 97.7 0.00081 1.8E-08 68.8 14.7 185 153-362 55-267 (495)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00045 9.7E-09 74.0 13.0 121 153-285 454-579 (731)
142 PF07693 KAP_NTPase: KAP famil 97.7 0.0031 6.7E-08 60.9 17.7 165 161-328 4-262 (325)
143 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00052 1.1E-08 74.7 13.2 136 153-298 565-717 (852)
144 PRK06526 transposase; Provisio 97.6 0.0001 2.2E-09 68.0 6.3 101 180-299 98-201 (254)
145 COG2812 DnaX DNA polymerase II 97.6 0.0002 4.3E-09 71.7 8.8 194 153-362 16-220 (515)
146 PRK09183 transposase/IS protei 97.6 0.00026 5.5E-09 65.7 8.6 101 181-299 103-206 (259)
147 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00017 3.6E-09 78.0 8.5 136 153-298 566-718 (852)
148 KOG1514 Origin recognition com 97.6 0.0028 6E-08 64.6 16.3 209 153-367 396-626 (767)
149 PRK07993 DNA polymerase III su 97.6 0.0026 5.7E-08 61.2 15.5 181 162-360 11-202 (334)
150 PRK06921 hypothetical protein; 97.6 0.00034 7.4E-09 65.1 9.1 100 180-299 117-225 (266)
151 PRK08118 topology modulation p 97.6 3.4E-05 7.3E-10 66.6 2.2 34 182-215 3-37 (167)
152 PRK07952 DNA replication prote 97.6 0.00044 9.6E-09 63.2 9.3 104 180-299 99-205 (244)
153 PRK06964 DNA polymerase III su 97.6 0.00073 1.6E-08 64.9 11.2 93 258-362 131-225 (342)
154 PRK08939 primosomal protein Dn 97.5 0.00057 1.2E-08 64.9 9.6 123 157-299 135-261 (306)
155 COG1222 RPT1 ATP-dependent 26S 97.5 0.003 6.6E-08 59.4 13.9 177 154-356 152-357 (406)
156 PLN00020 ribulose bisphosphate 97.5 0.0019 4.1E-08 61.6 12.6 26 178-203 146-171 (413)
157 KOG0741 AAA+-type ATPase [Post 97.5 0.0037 8.1E-08 61.6 14.6 160 178-365 536-715 (744)
158 PRK13531 regulatory ATPase Rav 97.5 0.00046 1E-08 68.4 8.6 152 154-328 21-193 (498)
159 PF07728 AAA_5: AAA domain (dy 97.5 3.3E-05 7.1E-10 64.6 0.5 89 183-284 2-90 (139)
160 PF01695 IstB_IS21: IstB-like 97.4 0.00017 3.7E-09 62.8 4.8 101 180-299 47-150 (178)
161 PRK04296 thymidine kinase; Pro 97.4 0.00026 5.7E-09 62.5 6.1 113 181-300 3-117 (190)
162 PRK04132 replication factor C 97.4 0.0044 9.5E-08 66.2 16.1 157 188-365 574-734 (846)
163 TIGR02237 recomb_radB DNA repa 97.4 0.00081 1.8E-08 60.4 9.3 88 178-269 10-107 (209)
164 PF02562 PhoH: PhoH-like prote 97.4 0.00065 1.4E-08 60.0 8.3 133 157-301 4-158 (205)
165 PRK06835 DNA replication prote 97.4 0.0004 8.7E-09 66.5 7.5 103 181-299 184-289 (329)
166 KOG2228 Origin recognition com 97.4 0.0022 4.7E-08 59.8 11.7 171 154-329 25-219 (408)
167 PRK12608 transcription termina 97.4 0.00093 2E-08 64.2 9.7 102 161-269 119-230 (380)
168 PRK05541 adenylylsulfate kinas 97.4 0.0011 2.4E-08 57.8 9.5 37 178-216 5-41 (176)
169 KOG0991 Replication factor C, 97.4 0.001 2.2E-08 58.6 8.9 44 153-202 27-70 (333)
170 COG1223 Predicted ATPase (AAA+ 97.4 0.0015 3.3E-08 58.5 10.1 178 153-355 121-318 (368)
171 COG0470 HolB ATPase involved i 97.4 0.0011 2.4E-08 63.9 10.0 141 155-315 3-167 (325)
172 CHL00095 clpC Clp protease ATP 97.4 0.00063 1.4E-08 73.8 8.9 136 153-299 509-662 (821)
173 PRK11034 clpA ATP-dependent Cl 97.4 0.0016 3.5E-08 69.2 11.6 133 154-297 459-606 (758)
174 PRK07261 topology modulation p 97.3 0.00047 1E-08 59.7 6.4 34 182-215 2-36 (171)
175 PHA00729 NTP-binding motif con 97.3 0.002 4.4E-08 57.6 10.4 25 179-203 16-40 (226)
176 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0017 3.7E-08 59.5 10.4 91 178-269 17-125 (235)
177 PRK09361 radB DNA repair and r 97.3 0.0011 2.4E-08 60.3 9.0 87 178-268 21-116 (225)
178 COG2607 Predicted ATPase (AAA+ 97.3 0.0014 3E-08 58.2 8.5 122 150-298 57-182 (287)
179 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00019 4E-09 68.6 3.3 50 154-203 52-101 (361)
180 PF14532 Sigma54_activ_2: Sigm 97.3 0.0002 4.3E-09 59.7 3.1 108 156-299 1-110 (138)
181 TIGR02902 spore_lonB ATP-depen 97.3 0.0015 3.2E-08 67.2 10.0 171 154-330 66-277 (531)
182 COG1484 DnaC DNA replication p 97.3 0.00079 1.7E-08 62.2 7.2 82 179-277 104-185 (254)
183 COG1136 SalX ABC-type antimicr 97.3 0.0027 5.9E-08 56.8 10.2 63 244-306 145-210 (226)
184 TIGR01243 CDC48 AAA family ATP 97.3 0.0047 1E-07 66.4 14.0 179 153-356 453-657 (733)
185 TIGR01243 CDC48 AAA family ATP 97.2 0.0023 4.9E-08 68.8 11.4 179 153-356 178-381 (733)
186 CHL00195 ycf46 Ycf46; Provisio 97.2 0.003 6.4E-08 63.8 11.1 154 179-356 258-429 (489)
187 cd01393 recA_like RecA is a b 97.2 0.0024 5.3E-08 58.1 9.7 91 178-269 17-124 (226)
188 PF08423 Rad51: Rad51; InterP 97.2 0.0015 3.2E-08 60.6 8.2 89 179-268 37-142 (256)
189 cd01120 RecA-like_NTPases RecA 97.2 0.0018 4E-08 55.2 8.3 40 182-223 1-40 (165)
190 cd01394 radB RadB. The archaea 97.2 0.002 4.3E-08 58.4 8.9 88 178-269 17-113 (218)
191 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0064 1.4E-07 61.0 12.7 178 153-355 190-395 (802)
192 PRK08699 DNA polymerase III su 97.2 0.0044 9.5E-08 59.4 11.5 71 258-328 112-184 (325)
193 COG4608 AppF ABC-type oligopep 97.2 0.0021 4.5E-08 58.6 8.6 126 179-307 38-178 (268)
194 COG1875 NYN ribonuclease and A 97.2 0.0013 2.7E-08 62.0 7.4 136 157-301 228-390 (436)
195 COG2884 FtsE Predicted ATPase 97.2 0.0052 1.1E-07 52.7 10.3 124 179-306 27-204 (223)
196 KOG1969 DNA replication checkp 97.2 0.0013 2.8E-08 67.2 7.9 88 177-284 323-412 (877)
197 cd03214 ABC_Iron-Siderophores_ 97.1 0.0045 9.8E-08 54.1 10.5 120 180-303 25-162 (180)
198 COG0542 clpA ATP-binding subun 97.1 0.0018 4E-08 67.7 9.0 153 153-328 170-345 (786)
199 PF13207 AAA_17: AAA domain; P 97.1 0.00033 7.1E-09 56.8 2.9 21 182-202 1-21 (121)
200 cd03228 ABCC_MRP_Like The MRP 97.1 0.0037 8E-08 54.2 9.6 118 180-304 28-160 (171)
201 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0039 8.3E-08 52.8 9.2 117 181-300 3-139 (159)
202 cd03247 ABCC_cytochrome_bd The 97.1 0.0037 8E-08 54.6 9.3 118 180-303 28-161 (178)
203 TIGR02238 recomb_DMC1 meiotic 97.1 0.004 8.6E-08 59.3 9.9 90 179-269 95-201 (313)
204 cd01131 PilT Pilus retraction 97.1 0.0011 2.5E-08 58.9 5.8 111 181-303 2-113 (198)
205 PF00158 Sigma54_activat: Sigm 97.0 0.0011 2.5E-08 57.0 5.5 132 155-299 1-144 (168)
206 PF07724 AAA_2: AAA domain (Cd 97.0 0.00076 1.6E-08 58.3 4.4 90 180-284 3-104 (171)
207 PTZ00494 tuzin-like protein; P 97.0 0.025 5.3E-07 55.2 14.6 170 148-329 366-544 (664)
208 TIGR01817 nifA Nif-specific re 97.0 0.0047 1E-07 64.0 10.8 136 151-299 194-341 (534)
209 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0068 1.5E-07 52.2 10.1 119 180-303 27-152 (166)
210 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0034 7.3E-08 58.0 8.5 88 179-268 68-172 (274)
211 KOG0735 AAA+-type ATPase [Post 97.0 0.0037 8E-08 63.7 9.3 133 179-329 430-586 (952)
212 PRK06067 flagellar accessory p 97.0 0.0038 8.3E-08 57.1 9.0 87 178-269 23-130 (234)
213 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0064 1.4E-07 51.0 9.6 106 180-304 26-132 (144)
214 PRK13695 putative NTPase; Prov 97.0 0.00088 1.9E-08 58.3 4.5 22 182-203 2-23 (174)
215 PRK11889 flhF flagellar biosyn 97.0 0.0068 1.5E-07 58.7 10.6 104 179-285 240-348 (436)
216 PRK06696 uridine kinase; Valid 97.0 0.0008 1.7E-08 61.1 4.1 43 158-203 3-45 (223)
217 PF00448 SRP54: SRP54-type pro 97.0 0.004 8.7E-08 55.1 8.3 57 180-238 1-58 (196)
218 cd03216 ABC_Carb_Monos_I This 96.9 0.0032 7E-08 54.0 7.6 117 180-303 26-146 (163)
219 cd03238 ABC_UvrA The excision 96.9 0.0052 1.1E-07 53.3 8.7 115 179-303 20-153 (176)
220 PLN03187 meiotic recombination 96.9 0.0037 8.1E-08 60.0 8.6 90 179-269 125-231 (344)
221 TIGR02974 phageshock_pspF psp 96.9 0.0036 7.8E-08 60.3 8.5 132 155-299 1-144 (329)
222 cd03222 ABC_RNaseL_inhibitor T 96.9 0.006 1.3E-07 53.0 9.0 104 180-304 25-137 (177)
223 TIGR02012 tigrfam_recA protein 96.9 0.0028 6E-08 60.2 7.1 85 178-269 53-143 (321)
224 KOG0744 AAA+-type ATPase [Post 96.9 0.0032 6.8E-08 58.3 7.1 81 179-269 176-260 (423)
225 cd00983 recA RecA is a bacter 96.8 0.003 6.6E-08 60.0 7.0 85 178-269 53-143 (325)
226 TIGR03499 FlhF flagellar biosy 96.8 0.0041 9E-08 58.5 7.8 87 179-268 193-281 (282)
227 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0058 1.3E-07 58.4 8.8 91 178-269 94-201 (316)
228 PRK11608 pspF phage shock prot 96.8 0.0037 8E-08 60.2 7.3 134 154-299 7-151 (326)
229 PLN03186 DNA repair protein RA 96.8 0.0063 1.4E-07 58.6 8.7 90 179-269 122-228 (342)
230 PRK09354 recA recombinase A; P 96.8 0.004 8.6E-08 59.7 7.2 85 178-269 58-148 (349)
231 KOG0730 AAA+-type ATPase [Post 96.8 0.013 2.8E-07 59.5 11.0 26 178-203 466-491 (693)
232 cd03230 ABC_DR_subfamily_A Thi 96.8 0.01 2.3E-07 51.4 9.3 119 180-304 26-160 (173)
233 cd03246 ABCC_Protease_Secretio 96.7 0.0071 1.5E-07 52.5 8.2 119 180-303 28-160 (173)
234 PRK15429 formate hydrogenlyase 96.7 0.0065 1.4E-07 64.9 9.3 135 153-299 376-521 (686)
235 PF00485 PRK: Phosphoribulokin 96.7 0.0082 1.8E-07 53.2 8.4 80 182-263 1-87 (194)
236 PF03215 Rad17: Rad17 cell cyc 96.7 0.01 2.2E-07 60.5 9.9 59 154-217 20-78 (519)
237 PRK15455 PrkA family serine pr 96.7 0.00099 2.1E-08 67.2 2.6 49 154-202 77-125 (644)
238 PF05659 RPW8: Arabidopsis bro 96.7 0.049 1.1E-06 45.5 12.2 112 2-122 3-114 (147)
239 cd00544 CobU Adenosylcobinamid 96.7 0.0019 4.1E-08 55.6 4.0 78 183-268 2-82 (169)
240 cd01125 repA Hexameric Replica 96.7 0.014 3.1E-07 53.6 9.9 142 182-323 3-198 (239)
241 PHA02244 ATPase-like protein 96.6 0.0066 1.4E-07 58.3 7.7 21 182-202 121-141 (383)
242 TIGR01650 PD_CobS cobaltochela 96.6 0.046 1E-06 51.9 13.3 61 154-227 46-106 (327)
243 PF13604 AAA_30: AAA domain; P 96.6 0.0023 4.9E-08 56.8 4.4 110 180-301 18-133 (196)
244 PTZ00035 Rad51 protein; Provis 96.6 0.016 3.4E-07 55.9 10.4 91 178-269 116-223 (337)
245 COG1120 FepC ABC-type cobalami 96.6 0.016 3.6E-07 52.9 9.9 62 246-307 143-207 (258)
246 cd01124 KaiC KaiC is a circadi 96.6 0.0064 1.4E-07 53.4 7.2 36 183-220 2-37 (187)
247 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.0041 8.9E-08 55.9 6.0 23 180-202 29-51 (213)
248 PRK12724 flagellar biosynthesi 96.6 0.011 2.4E-07 57.9 9.2 24 179-202 222-245 (432)
249 COG0468 RecA RecA/RadA recombi 96.6 0.015 3.3E-07 54.0 9.7 90 178-269 58-151 (279)
250 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0075 1.6E-07 54.9 7.5 124 180-303 30-203 (254)
251 KOG0733 Nuclear AAA ATPase (VC 96.6 0.021 4.5E-07 57.5 11.1 132 179-330 544-693 (802)
252 PRK14722 flhF flagellar biosyn 96.6 0.0064 1.4E-07 59.0 7.4 89 180-270 137-226 (374)
253 COG1124 DppF ABC-type dipeptid 96.6 0.019 4.1E-07 51.4 9.6 58 250-307 150-210 (252)
254 KOG0743 AAA+-type ATPase [Post 96.6 0.05 1.1E-06 53.1 13.1 149 181-366 236-413 (457)
255 cd02025 PanK Pantothenate kina 96.6 0.0081 1.7E-07 54.3 7.4 21 182-202 1-21 (220)
256 PRK10733 hflB ATP-dependent me 96.6 0.014 3.1E-07 61.5 10.4 130 181-330 186-336 (644)
257 PRK09270 nucleoside triphospha 96.5 0.007 1.5E-07 55.2 7.0 25 178-202 31-55 (229)
258 PRK04301 radA DNA repair and r 96.5 0.014 2.9E-07 56.2 9.3 90 179-269 101-208 (317)
259 KOG0731 AAA+-type ATPase conta 96.5 0.035 7.6E-07 58.1 12.6 183 154-360 312-522 (774)
260 COG0572 Udk Uridine kinase [Nu 96.5 0.0057 1.2E-07 54.2 6.0 78 178-260 6-85 (218)
261 TIGR02236 recomb_radA DNA repa 96.5 0.014 3.1E-07 55.8 9.3 56 179-235 94-153 (310)
262 PRK05022 anaerobic nitric oxid 96.5 0.0084 1.8E-07 61.6 8.0 136 152-299 186-332 (509)
263 TIGR00554 panK_bact pantothena 96.5 0.013 2.8E-07 55.0 8.6 80 178-259 60-141 (290)
264 PTZ00301 uridine kinase; Provi 96.5 0.0055 1.2E-07 54.8 5.8 23 180-202 3-25 (210)
265 COG0464 SpoVK ATPases of the A 96.5 0.028 6.2E-07 57.6 11.8 133 178-330 274-424 (494)
266 PRK05703 flhF flagellar biosyn 96.5 0.021 4.5E-07 57.0 10.4 89 180-270 221-310 (424)
267 PRK12723 flagellar biosynthesi 96.5 0.02 4.4E-07 56.1 9.9 91 179-271 173-266 (388)
268 PRK14974 cell division protein 96.4 0.028 6E-07 54.0 10.6 90 179-271 139-234 (336)
269 TIGR00959 ffh signal recogniti 96.4 0.019 4.2E-07 56.9 9.8 24 179-202 98-121 (428)
270 COG1126 GlnQ ABC-type polar am 96.4 0.025 5.3E-07 49.8 9.2 125 179-306 27-203 (240)
271 COG0563 Adk Adenylate kinase a 96.4 0.0072 1.6E-07 52.5 6.0 22 182-203 2-23 (178)
272 cd03115 SRP The signal recogni 96.4 0.021 4.6E-07 49.5 9.1 21 182-202 2-22 (173)
273 cd03229 ABC_Class3 This class 96.4 0.013 2.9E-07 51.1 7.8 117 180-303 26-165 (178)
274 PRK05800 cobU adenosylcobinami 96.4 0.0021 4.5E-08 55.5 2.5 80 182-268 3-85 (170)
275 PF01583 APS_kinase: Adenylyls 96.4 0.0023 5.1E-08 53.9 2.7 36 180-217 2-37 (156)
276 PRK07667 uridine kinase; Provi 96.4 0.0043 9.2E-08 54.9 4.5 38 162-203 3-40 (193)
277 PRK00889 adenylylsulfate kinas 96.4 0.026 5.6E-07 49.0 9.4 25 179-203 3-27 (175)
278 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.011 2.3E-07 50.4 6.9 117 181-305 26-146 (157)
279 PRK08533 flagellar accessory p 96.4 0.026 5.7E-07 51.4 9.7 49 179-231 23-71 (230)
280 KOG1532 GTPase XAB1, interacts 96.4 0.022 4.8E-07 51.6 8.8 27 178-204 17-43 (366)
281 PRK05439 pantothenate kinase; 96.4 0.02 4.3E-07 54.2 9.1 80 178-260 84-166 (311)
282 KOG2035 Replication factor C, 96.4 0.025 5.3E-07 51.5 9.0 191 155-368 15-234 (351)
283 PRK07132 DNA polymerase III su 96.4 0.24 5.2E-06 46.9 16.3 128 179-327 17-160 (299)
284 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.02 4.4E-07 52.5 9.0 49 178-230 19-67 (237)
285 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.011 2.4E-07 52.7 7.0 119 180-307 29-159 (204)
286 cd03263 ABC_subfamily_A The AB 96.4 0.028 6.1E-07 50.8 9.8 24 180-203 28-51 (220)
287 PF13238 AAA_18: AAA domain; P 96.3 0.0025 5.5E-08 52.0 2.6 21 183-203 1-21 (129)
288 KOG0734 AAA+-type ATPase conta 96.3 0.039 8.5E-07 54.8 10.9 52 154-205 305-362 (752)
289 PRK13539 cytochrome c biogenes 96.3 0.026 5.7E-07 50.5 9.4 62 251-315 137-200 (207)
290 COG1618 Predicted nucleotide k 96.3 0.0034 7.4E-08 52.2 3.2 24 180-203 5-28 (179)
291 TIGR00708 cobA cob(I)alamin ad 96.3 0.043 9.4E-07 47.1 10.0 117 181-300 6-141 (173)
292 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.055 1.2E-06 48.4 11.3 23 180-202 34-56 (207)
293 PRK12727 flagellar biosynthesi 96.3 0.015 3.3E-07 58.5 8.2 89 179-269 349-438 (559)
294 PRK05480 uridine/cytidine kina 96.3 0.0032 6.9E-08 56.6 3.2 26 178-203 4-29 (209)
295 PF13671 AAA_33: AAA domain; P 96.3 0.0033 7.1E-08 52.6 3.1 21 182-202 1-21 (143)
296 PRK00771 signal recognition pa 96.3 0.019 4.2E-07 57.1 8.9 25 179-203 94-118 (437)
297 PF12775 AAA_7: P-loop contain 96.3 0.0058 1.3E-07 57.1 5.0 95 163-277 23-118 (272)
298 cd03217 ABC_FeS_Assembly ABC-t 96.3 0.019 4.2E-07 51.1 8.2 121 180-303 26-168 (200)
299 PTZ00088 adenylate kinase 1; P 96.3 0.0064 1.4E-07 55.2 5.1 21 182-202 8-28 (229)
300 PF10236 DAP3: Mitochondrial r 96.3 0.053 1.1E-06 51.7 11.4 49 310-359 258-306 (309)
301 cd03215 ABC_Carb_Monos_II This 96.3 0.053 1.2E-06 47.4 10.7 24 180-203 26-49 (182)
302 cd03244 ABCC_MRP_domain2 Domai 96.2 0.047 1E-06 49.4 10.6 24 180-203 30-53 (221)
303 cd02027 APSK Adenosine 5'-phos 96.2 0.015 3.2E-07 49.1 6.8 22 182-203 1-22 (149)
304 PRK08233 hypothetical protein; 96.2 0.0036 7.7E-08 54.8 3.1 24 180-203 3-26 (182)
305 TIGR00235 udk uridine kinase. 96.2 0.0039 8.5E-08 55.9 3.3 25 179-203 5-29 (207)
306 PRK10867 signal recognition pa 96.2 0.019 4.2E-07 57.0 8.4 24 179-202 99-122 (433)
307 COG1102 Cmk Cytidylate kinase 96.2 0.0098 2.1E-07 49.6 5.2 44 182-238 2-45 (179)
308 cd02019 NK Nucleoside/nucleoti 96.2 0.0033 7.1E-08 45.3 2.2 22 182-203 1-22 (69)
309 PF00154 RecA: recA bacterial 96.2 0.011 2.5E-07 55.9 6.2 84 179-269 52-141 (322)
310 cd03232 ABC_PDR_domain2 The pl 96.2 0.022 4.8E-07 50.3 7.8 23 180-202 33-55 (192)
311 PRK06762 hypothetical protein; 96.2 0.0038 8.3E-08 53.7 2.8 24 180-203 2-25 (166)
312 PF00006 ATP-synt_ab: ATP synt 96.1 0.021 4.6E-07 51.1 7.5 84 181-268 16-114 (215)
313 KOG1051 Chaperone HSP104 and r 96.1 0.03 6.6E-07 59.8 9.7 120 155-285 564-686 (898)
314 TIGR03522 GldA_ABC_ATP gliding 96.1 0.053 1.1E-06 51.7 10.7 24 180-203 28-51 (301)
315 cd01122 GP4d_helicase GP4d_hel 96.1 0.05 1.1E-06 50.9 10.5 53 179-234 29-81 (271)
316 PRK03846 adenylylsulfate kinas 96.1 0.019 4.1E-07 51.1 7.2 25 178-202 22-46 (198)
317 PF13481 AAA_25: AAA domain; P 96.1 0.01 2.2E-07 52.4 5.4 41 181-221 33-81 (193)
318 PRK09544 znuC high-affinity zi 96.1 0.038 8.2E-07 51.1 9.3 24 180-203 30-53 (251)
319 PRK15177 Vi polysaccharide exp 96.1 0.045 9.8E-07 49.2 9.6 24 180-203 13-36 (213)
320 cd03245 ABCC_bacteriocin_expor 96.1 0.06 1.3E-06 48.7 10.5 25 179-203 29-53 (220)
321 cd03254 ABCC_Glucan_exporter_l 96.1 0.068 1.5E-06 48.6 11.0 54 250-303 148-202 (229)
322 TIGR02858 spore_III_AA stage I 96.1 0.031 6.6E-07 52.0 8.6 129 161-303 97-233 (270)
323 cd00984 DnaB_C DnaB helicase C 96.1 0.072 1.6E-06 48.9 11.2 41 179-220 12-52 (242)
324 COG4618 ArpD ABC-type protease 96.1 0.068 1.5E-06 52.9 11.1 23 180-202 362-384 (580)
325 PRK06002 fliI flagellum-specif 96.1 0.025 5.3E-07 56.1 8.2 87 179-268 164-263 (450)
326 cd03283 ABC_MutS-like MutS-lik 96.0 0.04 8.6E-07 49.0 8.8 22 181-202 26-47 (199)
327 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.059 1.3E-06 48.9 10.2 24 180-203 48-71 (224)
328 PRK13543 cytochrome c biogenes 96.0 0.072 1.6E-06 48.0 10.7 24 180-203 37-60 (214)
329 cd03253 ABCC_ATM1_transporter 96.0 0.063 1.4E-06 49.1 10.5 55 250-304 146-201 (236)
330 PRK06547 hypothetical protein; 96.0 0.0054 1.2E-07 53.0 3.1 26 178-203 13-38 (172)
331 PRK12726 flagellar biosynthesi 96.0 0.059 1.3E-06 52.2 10.3 90 179-270 205-296 (407)
332 PF03308 ArgK: ArgK protein; 96.0 0.0095 2.1E-07 54.0 4.7 65 161-229 14-78 (266)
333 TIGR03740 galliderm_ABC gallid 96.0 0.064 1.4E-06 48.6 10.3 54 251-304 134-189 (223)
334 cd03264 ABC_drug_resistance_li 96.0 0.038 8.3E-07 49.6 8.8 21 182-202 27-47 (211)
335 TIGR02329 propionate_PrpR prop 96.0 0.038 8.2E-07 56.6 9.6 47 153-203 212-258 (526)
336 cd03233 ABC_PDR_domain1 The pl 96.0 0.074 1.6E-06 47.4 10.5 24 180-203 33-56 (202)
337 cd03231 ABC_CcmA_heme_exporter 96.0 0.061 1.3E-06 47.9 9.8 24 180-203 26-49 (201)
338 cd03251 ABCC_MsbA MsbA is an e 96.0 0.11 2.5E-06 47.3 11.8 55 250-304 147-202 (234)
339 PRK10820 DNA-binding transcrip 96.0 0.026 5.7E-07 58.0 8.3 134 153-299 204-349 (520)
340 cd03298 ABC_ThiQ_thiamine_tran 96.0 0.031 6.7E-07 50.2 7.9 24 180-203 24-47 (211)
341 PRK05986 cob(I)alamin adenolsy 96.0 0.05 1.1E-06 47.4 8.7 119 180-300 22-159 (191)
342 cd03268 ABC_BcrA_bacitracin_re 95.9 0.042 9.1E-07 49.2 8.7 23 180-202 26-48 (208)
343 PRK03839 putative kinase; Prov 95.9 0.005 1.1E-07 53.8 2.6 22 182-203 2-23 (180)
344 PF03969 AFG1_ATPase: AFG1-lik 95.9 0.027 5.8E-07 54.8 7.8 102 179-299 61-167 (362)
345 TIGR00064 ftsY signal recognit 95.9 0.048 1E-06 51.0 9.3 40 178-219 70-109 (272)
346 PRK05917 DNA polymerase III su 95.9 0.079 1.7E-06 49.6 10.6 60 257-316 93-154 (290)
347 cd02028 UMPK_like Uridine mono 95.9 0.011 2.5E-07 51.5 4.7 22 182-203 1-22 (179)
348 TIGR01360 aden_kin_iso1 adenyl 95.9 0.006 1.3E-07 53.6 3.0 24 179-202 2-25 (188)
349 cd01121 Sms Sms (bacterial rad 95.9 0.031 6.7E-07 54.6 8.1 84 179-270 81-169 (372)
350 PRK06731 flhF flagellar biosyn 95.9 0.047 1E-06 50.7 9.0 103 180-284 75-181 (270)
351 COG0467 RAD55 RecA-superfamily 95.9 0.017 3.6E-07 53.8 6.1 50 178-231 21-70 (260)
352 PRK04040 adenylate kinase; Pro 95.9 0.0063 1.4E-07 53.5 2.9 23 180-202 2-24 (188)
353 COG4088 Predicted nucleotide k 95.9 0.2 4.2E-06 43.8 11.7 126 181-328 2-138 (261)
354 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.061 1.3E-06 49.5 9.6 125 180-304 25-181 (246)
355 COG1066 Sms Predicted ATP-depe 95.9 0.025 5.4E-07 54.5 7.0 83 179-270 92-179 (456)
356 TIGR03771 anch_rpt_ABC anchore 95.9 0.083 1.8E-06 47.9 10.3 24 180-203 6-29 (223)
357 COG2274 SunT ABC-type bacterio 95.8 0.044 9.6E-07 58.0 9.5 24 179-202 498-521 (709)
358 PF08433 KTI12: Chromatin asso 95.8 0.028 6E-07 52.4 7.2 23 181-203 2-24 (270)
359 TIGR01420 pilT_fam pilus retra 95.8 0.021 4.6E-07 55.4 6.7 112 180-302 122-233 (343)
360 cd03252 ABCC_Hemolysin The ABC 95.8 0.11 2.4E-06 47.5 11.2 53 251-303 148-201 (237)
361 COG1703 ArgK Putative periplas 95.8 0.011 2.5E-07 54.4 4.4 65 163-231 38-102 (323)
362 PRK14721 flhF flagellar biosyn 95.8 0.043 9.3E-07 54.2 8.7 24 179-202 190-213 (420)
363 smart00534 MUTSac ATPase domai 95.8 0.009 1.9E-07 52.5 3.7 21 182-202 1-21 (185)
364 KOG0739 AAA+-type ATPase [Post 95.8 1.6 3.5E-05 40.5 19.8 176 154-355 134-334 (439)
365 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.038 8.2E-07 51.4 8.0 40 179-220 35-74 (259)
366 TIGR01188 drrA daunorubicin re 95.8 0.075 1.6E-06 50.7 10.2 24 180-203 19-42 (302)
367 PF07726 AAA_3: ATPase family 95.8 0.0086 1.9E-07 48.3 3.1 27 183-211 2-28 (131)
368 cd03213 ABCG_EPDR ABCG transpo 95.8 0.045 9.8E-07 48.4 8.1 118 180-300 35-172 (194)
369 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.0087 1.9E-07 56.9 3.6 50 153-202 61-110 (358)
370 PRK09580 sufC cysteine desulfu 95.8 0.09 2E-06 48.5 10.4 24 180-203 27-50 (248)
371 TIGR00150 HI0065_YjeE ATPase, 95.8 0.011 2.3E-07 48.5 3.6 39 161-203 7-45 (133)
372 TIGR03498 FliI_clade3 flagella 95.8 0.041 8.9E-07 54.4 8.4 87 180-269 140-240 (418)
373 PRK13537 nodulation ABC transp 95.8 0.09 2E-06 50.2 10.5 24 180-203 33-56 (306)
374 PRK04328 hypothetical protein; 95.7 0.037 8.1E-07 51.1 7.6 41 179-221 22-62 (249)
375 PLN02348 phosphoribulokinase 95.7 0.06 1.3E-06 52.3 9.2 25 178-202 47-71 (395)
376 PRK12597 F0F1 ATP synthase sub 95.7 0.029 6.3E-07 56.0 7.3 89 179-268 142-246 (461)
377 COG1643 HrpA HrpA-like helicas 95.7 0.051 1.1E-06 58.2 9.4 131 160-301 53-207 (845)
378 COG4133 CcmA ABC-type transpor 95.7 0.099 2.1E-06 45.0 9.3 56 246-301 135-192 (209)
379 PRK05973 replicative DNA helic 95.7 0.052 1.1E-06 49.3 8.2 49 179-231 63-111 (237)
380 TIGR02322 phosphon_PhnN phosph 95.7 0.0075 1.6E-07 52.7 2.7 23 181-203 2-24 (179)
381 PRK00625 shikimate kinase; Pro 95.7 0.0069 1.5E-07 52.4 2.4 21 182-202 2-22 (173)
382 PRK11388 DNA-binding transcrip 95.7 0.026 5.7E-07 59.8 7.3 132 153-299 325-467 (638)
383 cd03250 ABCC_MRP_domain1 Domai 95.7 0.17 3.7E-06 45.1 11.6 58 247-304 133-193 (204)
384 PRK08972 fliI flagellum-specif 95.7 0.043 9.2E-07 54.2 8.1 86 180-269 162-262 (444)
385 PRK07276 DNA polymerase III su 95.7 0.47 1E-05 44.6 14.7 70 257-327 102-173 (290)
386 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.047 1E-06 49.7 8.0 41 179-221 19-59 (229)
387 PRK14269 phosphate ABC transpo 95.7 0.12 2.7E-06 47.6 10.8 23 180-202 28-50 (246)
388 cd02023 UMPK Uridine monophosp 95.7 0.0064 1.4E-07 54.1 2.1 21 182-202 1-21 (198)
389 PRK00131 aroK shikimate kinase 95.7 0.0078 1.7E-07 52.1 2.7 25 179-203 3-27 (175)
390 PF00910 RNA_helicase: RNA hel 95.6 0.0065 1.4E-07 48.0 1.9 21 183-203 1-21 (107)
391 PRK05922 type III secretion sy 95.6 0.064 1.4E-06 53.1 9.1 86 180-269 157-257 (434)
392 COG0488 Uup ATPase components 95.6 0.034 7.4E-07 56.8 7.4 130 183-315 351-511 (530)
393 COG0396 sufC Cysteine desulfur 95.6 0.1 2.2E-06 46.5 9.2 25 180-204 30-54 (251)
394 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.0069 1.5E-07 53.1 2.1 21 182-202 1-21 (183)
395 cd01135 V_A-ATPase_B V/A-type 95.6 0.064 1.4E-06 49.6 8.4 90 180-269 69-176 (276)
396 COG4181 Predicted ABC-type tra 95.6 0.17 3.7E-06 42.9 10.0 84 223-307 122-215 (228)
397 PF06745 KaiC: KaiC; InterPro 95.6 0.019 4.1E-07 52.2 5.0 86 179-268 18-124 (226)
398 PRK08149 ATP synthase SpaL; Va 95.6 0.06 1.3E-06 53.2 8.7 87 179-269 150-251 (428)
399 PRK14723 flhF flagellar biosyn 95.6 0.081 1.7E-06 56.0 10.1 24 180-203 185-208 (767)
400 PRK10463 hydrogenase nickel in 95.6 0.036 7.9E-07 51.7 6.8 87 178-270 102-195 (290)
401 PRK10751 molybdopterin-guanine 95.6 0.012 2.6E-07 50.6 3.4 25 179-203 5-29 (173)
402 PF03205 MobB: Molybdopterin g 95.6 0.014 3E-07 48.6 3.7 39 181-220 1-39 (140)
403 KOG0736 Peroxisome assembly fa 95.6 0.15 3.1E-06 53.1 11.4 140 183-352 708-875 (953)
404 PF00625 Guanylate_kin: Guanyl 95.5 0.012 2.5E-07 51.6 3.4 36 180-217 2-37 (183)
405 cd03236 ABC_RNaseL_inhibitor_d 95.5 0.096 2.1E-06 48.5 9.6 25 179-203 25-49 (255)
406 PRK15064 ABC transporter ATP-b 95.5 0.12 2.5E-06 53.7 11.2 53 250-304 164-217 (530)
407 cd01136 ATPase_flagellum-secre 95.5 0.072 1.6E-06 50.8 8.8 85 180-268 69-168 (326)
408 PRK08927 fliI flagellum-specif 95.5 0.056 1.2E-06 53.6 8.3 87 179-269 157-258 (442)
409 TIGR02314 ABC_MetN D-methionin 95.5 0.081 1.8E-06 51.2 9.3 57 250-306 149-208 (343)
410 COG1428 Deoxynucleoside kinase 95.5 0.0091 2E-07 52.2 2.4 24 180-203 4-27 (216)
411 PRK13545 tagH teichoic acids e 95.5 0.13 2.8E-06 52.3 10.8 24 180-203 50-73 (549)
412 PRK07594 type III secretion sy 95.5 0.063 1.4E-06 53.2 8.6 87 179-269 154-255 (433)
413 TIGR01818 ntrC nitrogen regula 95.5 0.065 1.4E-06 54.5 9.1 161 154-327 135-320 (463)
414 PRK12678 transcription termina 95.5 0.035 7.5E-07 56.2 6.7 98 164-268 405-512 (672)
415 PF13479 AAA_24: AAA domain 95.5 0.036 7.9E-07 49.8 6.4 20 181-200 4-23 (213)
416 cd03300 ABC_PotA_N PotA is an 95.5 0.09 2E-06 48.0 9.1 24 180-203 26-49 (232)
417 TIGR00390 hslU ATP-dependent p 95.5 0.036 7.8E-07 54.3 6.6 51 153-203 12-70 (441)
418 PRK09099 type III secretion sy 95.5 0.059 1.3E-06 53.6 8.3 87 179-268 162-262 (441)
419 PF03193 DUF258: Protein of un 95.5 0.021 4.5E-07 48.4 4.4 35 160-203 24-58 (161)
420 TIGR03411 urea_trans_UrtD urea 95.5 0.13 2.9E-06 47.1 10.4 24 180-203 28-51 (242)
421 TIGR03263 guanyl_kin guanylate 95.5 0.01 2.2E-07 51.8 2.8 22 181-202 2-23 (180)
422 cd00227 CPT Chloramphenicol (C 95.5 0.0096 2.1E-07 51.8 2.5 23 181-203 3-25 (175)
423 KOG2170 ATPase of the AAA+ sup 95.5 0.025 5.4E-07 52.1 5.2 114 154-284 83-203 (344)
424 TIGR00041 DTMP_kinase thymidyl 95.5 0.075 1.6E-06 47.0 8.3 23 181-203 4-26 (195)
425 cd02021 GntK Gluconate kinase 95.5 0.009 1.9E-07 50.4 2.3 22 182-203 1-22 (150)
426 PRK09519 recA DNA recombinatio 95.4 0.048 1E-06 57.8 7.9 84 179-269 59-148 (790)
427 PRK06217 hypothetical protein; 95.4 0.0097 2.1E-07 52.2 2.4 22 182-203 3-24 (183)
428 COG0714 MoxR-like ATPases [Gen 95.4 0.03 6.4E-07 54.2 6.0 108 154-284 25-137 (329)
429 cd03243 ABC_MutS_homologs The 95.4 0.021 4.5E-07 51.0 4.5 22 181-202 30-51 (202)
430 TIGR02868 CydC thiol reductant 95.4 0.12 2.5E-06 53.7 10.7 24 179-202 360-383 (529)
431 cd03285 ABC_MSH2_euk MutS2 hom 95.4 0.015 3.2E-07 52.7 3.5 120 179-305 29-159 (222)
432 cd02024 NRK1 Nicotinamide ribo 95.4 0.0093 2E-07 52.2 2.1 22 182-203 1-22 (187)
433 COG2842 Uncharacterized ATPase 95.4 0.26 5.7E-06 45.6 11.5 98 181-286 95-192 (297)
434 PRK09280 F0F1 ATP synthase sub 95.4 0.054 1.2E-06 54.0 7.6 89 179-268 143-247 (463)
435 PF08477 Miro: Miro-like prote 95.4 0.012 2.6E-07 47.3 2.6 22 183-204 2-23 (119)
436 cd03289 ABCC_CFTR2 The CFTR su 95.4 0.17 3.6E-06 47.5 10.6 24 180-203 30-53 (275)
437 TIGR03575 selen_PSTK_euk L-ser 95.4 0.04 8.7E-07 52.9 6.5 21 183-203 2-22 (340)
438 TIGR01069 mutS2 MutS2 family p 95.3 0.018 3.8E-07 61.8 4.5 24 179-202 321-344 (771)
439 PRK15453 phosphoribulokinase; 95.3 0.094 2E-06 48.6 8.5 78 179-258 4-89 (290)
440 PRK14264 phosphate ABC transpo 95.3 0.15 3.2E-06 48.8 10.3 24 180-203 71-94 (305)
441 KOG0727 26S proteasome regulat 95.3 0.039 8.5E-07 49.4 5.8 50 154-203 156-212 (408)
442 PRK06936 type III secretion sy 95.3 0.072 1.6E-06 52.8 8.3 87 179-269 161-262 (439)
443 PRK11823 DNA repair protein Ra 95.3 0.079 1.7E-06 53.3 8.8 84 179-270 79-167 (446)
444 PRK14265 phosphate ABC transpo 95.3 0.14 3E-06 48.1 10.0 62 251-313 171-233 (274)
445 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.059 1.3E-06 49.8 7.2 86 180-269 69-171 (274)
446 PF09848 DUF2075: Uncharacteri 95.3 0.072 1.6E-06 52.0 8.3 41 181-221 2-42 (352)
447 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.036 7.8E-07 49.3 5.7 21 181-201 29-49 (200)
448 cd03287 ABC_MSH3_euk MutS3 hom 95.3 0.15 3.2E-06 46.0 9.6 119 179-305 30-160 (222)
449 cd04159 Arl10_like Arl10-like 95.3 0.12 2.5E-06 43.4 8.7 21 183-203 2-22 (159)
450 PRK10078 ribose 1,5-bisphospho 95.3 0.013 2.9E-07 51.4 2.8 23 181-203 3-25 (186)
451 TIGR02655 circ_KaiC circadian 95.3 0.079 1.7E-06 54.1 8.8 87 178-269 261-363 (484)
452 PRK00300 gmk guanylate kinase; 95.3 0.013 2.8E-07 52.4 2.8 25 179-203 4-28 (205)
453 PRK13947 shikimate kinase; Pro 95.3 0.012 2.6E-07 50.9 2.5 21 182-202 3-23 (171)
454 PRK14738 gmk guanylate kinase; 95.3 0.017 3.7E-07 51.7 3.5 25 178-202 11-35 (206)
455 PRK14737 gmk guanylate kinase; 95.3 0.016 3.4E-07 50.9 3.2 25 179-203 3-27 (186)
456 cd00820 PEPCK_HprK Phosphoenol 95.3 0.016 3.5E-07 45.3 2.9 22 180-201 15-36 (107)
457 TIGR01425 SRP54_euk signal rec 95.3 0.15 3.3E-06 50.5 10.3 24 179-202 99-122 (429)
458 COG2401 ABC-type ATPase fused 95.3 0.02 4.4E-07 55.0 4.1 129 180-308 409-577 (593)
459 PTZ00185 ATPase alpha subunit; 95.3 0.1 2.2E-06 52.4 9.0 90 180-269 189-299 (574)
460 PRK06995 flhF flagellar biosyn 95.3 0.07 1.5E-06 53.7 8.1 24 180-203 256-279 (484)
461 COG1131 CcmA ABC-type multidru 95.2 0.21 4.5E-06 47.3 11.0 24 180-203 31-54 (293)
462 PF03266 NTPase_1: NTPase; In 95.2 0.012 2.6E-07 50.6 2.4 21 183-203 2-22 (168)
463 PRK11650 ugpC glycerol-3-phosp 95.2 0.12 2.6E-06 50.4 9.5 24 180-203 30-53 (356)
464 TIGR00455 apsK adenylylsulfate 95.2 0.14 3E-06 44.8 9.1 25 179-203 17-41 (184)
465 cd02020 CMPK Cytidine monophos 95.2 0.012 2.5E-07 49.4 2.1 21 182-202 1-21 (147)
466 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.27 5.8E-06 56.7 12.9 25 179-203 1629-1653(2281)
467 PF02463 SMC_N: RecF/RecN/SMC 95.2 0.15 3.3E-06 46.0 9.5 48 258-305 157-205 (220)
468 PRK13949 shikimate kinase; Pro 95.2 0.013 2.9E-07 50.5 2.4 22 182-203 3-24 (169)
469 PRK13765 ATP-dependent proteas 95.2 0.024 5.3E-07 59.1 4.7 74 153-236 31-104 (637)
470 PLN02924 thymidylate kinase 95.2 0.12 2.5E-06 46.7 8.6 27 178-204 14-40 (220)
471 PRK07196 fliI flagellum-specif 95.2 0.083 1.8E-06 52.4 8.2 25 179-203 154-178 (434)
472 COG2019 AdkA Archaeal adenylat 95.2 0.018 3.9E-07 48.3 3.0 23 180-202 4-26 (189)
473 PF03796 DnaB_C: DnaB-like hel 95.2 0.1 2.2E-06 48.6 8.5 55 180-237 19-73 (259)
474 TIGR03496 FliI_clade1 flagella 95.1 0.11 2.3E-06 51.5 8.9 86 179-268 136-236 (411)
475 PF06309 Torsin: Torsin; Inte 95.1 0.035 7.6E-07 44.7 4.5 47 154-203 26-76 (127)
476 PRK07721 fliI flagellum-specif 95.1 0.1 2.2E-06 52.1 8.8 87 179-268 157-257 (438)
477 PRK13536 nodulation factor exp 95.1 0.19 4.1E-06 48.7 10.6 24 180-203 67-90 (340)
478 PRK10923 glnG nitrogen regulat 95.1 0.06 1.3E-06 54.9 7.5 47 153-203 138-184 (469)
479 TIGR03880 KaiC_arch_3 KaiC dom 95.1 0.11 2.3E-06 47.2 8.4 41 179-221 15-55 (224)
480 COG5635 Predicted NTPase (NACH 95.1 0.022 4.8E-07 62.0 4.5 182 180-367 222-427 (824)
481 cd00071 GMPK Guanosine monopho 95.1 0.014 3E-07 48.5 2.3 22 182-203 1-22 (137)
482 PRK10875 recD exonuclease V su 95.1 0.097 2.1E-06 54.6 8.9 120 180-302 167-305 (615)
483 PF13245 AAA_19: Part of AAA d 95.1 0.035 7.7E-07 40.7 4.1 23 180-202 10-33 (76)
484 cd02029 PRK_like Phosphoribulo 95.1 0.051 1.1E-06 49.9 6.0 77 182-260 1-85 (277)
485 KOG0735 AAA+-type ATPase [Post 95.1 0.43 9.3E-06 49.4 12.9 179 154-357 668-871 (952)
486 PLN02200 adenylate kinase fami 95.1 0.018 3.9E-07 52.5 3.1 24 179-202 42-65 (234)
487 PRK05688 fliI flagellum-specif 95.1 0.089 1.9E-06 52.3 8.1 86 180-269 168-268 (451)
488 COG1116 TauB ABC-type nitrate/ 95.1 0.017 3.6E-07 52.0 2.8 23 180-202 29-51 (248)
489 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.06 1.3E-06 53.5 6.9 90 179-269 137-242 (449)
490 PRK06793 fliI flagellum-specif 95.1 0.1 2.2E-06 51.7 8.4 89 179-270 155-257 (432)
491 PRK11160 cysteine/glutathione 95.0 0.19 4E-06 52.7 11.0 25 179-203 365-389 (574)
492 PRK14530 adenylate kinase; Pro 95.0 0.015 3.3E-07 52.4 2.5 21 182-202 5-25 (215)
493 PRK13409 putative ATPase RIL; 95.0 0.14 3.1E-06 53.5 10.0 134 180-314 365-528 (590)
494 PRK10636 putative ABC transpor 95.0 0.25 5.4E-06 52.3 11.9 24 180-203 27-50 (638)
495 PRK00409 recombination and DNA 95.0 0.017 3.7E-07 62.1 3.2 24 179-202 326-349 (782)
496 COG0465 HflB ATP-dependent Zn 95.0 0.31 6.8E-06 50.0 11.9 182 152-358 149-357 (596)
497 TIGR01313 therm_gnt_kin carboh 95.0 0.013 2.9E-07 50.2 2.0 21 183-203 1-21 (163)
498 KOG0924 mRNA splicing factor A 95.0 0.22 4.7E-06 51.0 10.5 117 179-301 370-512 (1042)
499 PF06414 Zeta_toxin: Zeta toxi 95.0 0.069 1.5E-06 47.5 6.5 102 178-285 13-117 (199)
500 PRK15115 response regulator Gl 95.0 0.081 1.7E-06 53.5 7.8 133 154-299 135-279 (444)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-64 Score=525.04 Aligned_cols=442 Identities=27% Similarity=0.492 Sum_probs=357.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHhhhchhhhhHH
Q 043083 4 AIVSSLLEQLISVAADEVKQQVRLLTGVREEVKKLTSNLQAIRAVLEDAEQRQMQQDKAVTFWLDQLKDASYDMEDMLEE 83 (468)
Q Consensus 4 ~~vs~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~~yd~eD~ld~ 83 (468)
+.+|..++++... +.+++..+.+.++.+..|++.|..++++++++++++. ....+..|.+.++++.|++||+++.
T Consensus 3 ~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 3 ACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred eEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 6677788899999999999999999999999999887 6778899999999999999999999
Q ss_pred HHHHHHHHhhhcCCCC-----cc---ccch-hHHHHHHHHHHHHHHHHhhccccCcccccCCCC---CCCCcccccCCCc
Q 043083 84 WTTARLKLQIEGVDDD-----NA---LALA-PHKKKIREINGKLDDIASQKDTFKFVENVSNNV---KKPERVRTTSLID 151 (468)
Q Consensus 84 ~~~~~~~~~~~~~~~~-----~~---~~~~-~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 151 (468)
+.......+..+.... .. ..++ ..+..+..+..++-.+......++......... .........+...
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 9876554332221110 00 1122 445555566666666666555554332211111 1111122233333
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh-cccccCceEEEEeCCCcCHHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE-VKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
... ||.+..++++.+.|.... ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++.+
T Consensus 158 ~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 158 ESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred ccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 334 999999999999998654 38999999999999999999999987 9999999999999999999999999
Q ss_pred HHHhhccCCCCh--hhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhh-hCC
Q 043083 231 IIEGLDESASSL--SEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM-MGS 307 (468)
Q Consensus 231 i~~~l~~~~~~~--~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~ 307 (468)
|+..++...... .+..++...|.+.|+++||||||||||+. .+|+.+..++|....||+|++|||+..|+.. +++
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 999988754432 23468889999999999999999999987 4699999999998889999999999999988 787
Q ss_pred CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC-cccccc----------
Q 043083 308 TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR-SEMWKV---------- 376 (468)
Q Consensus 308 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~-~~~w~~---------- 376 (468)
...++++.|++++||.||++.++.... ...+.++++|++|+++|+|+|||++++|+.|+.+. ...|+.
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 889999999999999999999975532 34455899999999999999999999999999998 346763
Q ss_pred ---cccCCCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCC-CCCCCHHHHHHHHHHHHHH
Q 043083 377 ---QEIGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNA-EEDEEMEMIGEEYFNILAA 452 (468)
Q Consensus 377 ---~~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~-~~~~~~e~~~~~~~~~Lv~ 452 (468)
....+.++++|.+||++||+ ++|.||+|||+||+||.|+++.|+.+|+|||||.+ .++.+++++|+.|+++||+
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~ 465 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVR 465 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHH
Confidence 12356788999999999997 99999999999999999999999999999999998 5578899999999999999
Q ss_pred CCCccccccC
Q 043083 453 RSFFQEFKKD 462 (468)
Q Consensus 453 r~l~q~~~~~ 462 (468)
+||++..+..
T Consensus 466 ~~Ll~~~~~~ 475 (889)
T KOG4658|consen 466 ASLLIEERDE 475 (889)
T ss_pred HHHHhhcccc
Confidence 9999987643
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5e-47 Score=360.45 Aligned_cols=269 Identities=36% Similarity=0.618 Sum_probs=214.0
Q ss_pred ccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhcc
Q 043083 158 RVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDE 237 (468)
Q Consensus 158 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (468)
|+.++++|.++|.... .+.++|+|+||||+||||||..++++..++.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999998754 478999999999999999999999977789999999999999998889999999999988
Q ss_pred CCC---ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhhhCC-CCeeeC
Q 043083 238 SAS---SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMGS-TNIIFI 313 (468)
Q Consensus 238 ~~~---~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 313 (468)
... ...+.+.+...+.+.|.++++||||||+|+. ..|+.+...++....||+||+|||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3466777999999999999999999999876 4788888888877779999999999998876654 678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC-cccccc------------cccC
Q 043083 314 EQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR-SEMWKV------------QEIG 380 (468)
Q Consensus 314 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~-~~~w~~------------~~~~ 380 (468)
++|+.+++++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+. ...|.. ....
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987544 223455567889999999999999999999995543 455542 0124
Q ss_pred CCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCC
Q 043083 381 QGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEE 435 (468)
Q Consensus 381 ~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~ 435 (468)
..+..++.+||+.||+ ++|+||+|||+||+++.|+++.|+++|++||||+.++
T Consensus 234 ~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 5678899999999999 9999999999999999999999999999999998753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-35 Score=323.77 Aligned_cols=281 Identities=19% Similarity=0.313 Sum_probs=217.3
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe---CCC------
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV---SDT------ 221 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~------ 221 (468)
+...+||++..++++..+|.... ..+++|+|+||||+||||||+++|+ ++..+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 44679999999999998885433 4689999999999999999999998 67788988877742 111
Q ss_pred -----cC-HHHHHHHHHHhhccCCC-ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE
Q 043083 222 -----FE-EIRVAKAIIEGLDESAS-SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV 294 (468)
Q Consensus 222 -----~~-~~~~~~~i~~~l~~~~~-~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 294 (468)
.+ ...+..+++..+..... .... ...+++.+.++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12334444444332211 1111 13567778999999999999865 457777765555678999999
Q ss_pred ecCChhHHhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCcccc
Q 043083 295 TTRNESVAHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMW 374 (468)
Q Consensus 295 TtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w 374 (468)
|||+..++...+...+|+++.|+.++||+||.++||... ..+..+.+++++|+++|+|+|||++++|+.|+.+....|
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 999999998777778999999999999999999999654 234567889999999999999999999999999887788
Q ss_pred cc------cccCCCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Q 043083 375 KV------QEIGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEEYFN 448 (468)
Q Consensus 375 ~~------~~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~~~ 448 (468)
+. .....++..+|++||+.|+++ ..|.||+++|+||.+..++ .+..|++.+.... +.-++
T Consensus 408 ~~~l~~L~~~~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 408 MDMLPRLRNGLDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHHHHHHhCccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 63 133457899999999999862 5899999999999986553 4777888765432 23488
Q ss_pred HHHHCCCcccc
Q 043083 449 ILAARSFFQEF 459 (468)
Q Consensus 449 ~Lv~r~l~q~~ 459 (468)
.|+++||++..
T Consensus 474 ~L~~ksLi~~~ 484 (1153)
T PLN03210 474 NLVDKSLIHVR 484 (1153)
T ss_pred HHHhcCCEEEc
Confidence 99999999864
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.54 E-value=5.5e-13 Score=146.83 Aligned_cols=266 Identities=16% Similarity=0.232 Sum_probs=168.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i 231 (468)
..++-|. +|.+.|... ...+++.|+|++|.||||++.++... ++.++|+++.. +.++..+...+
T Consensus 14 ~~~~~R~----rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcch----HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 3455555 444444321 35789999999999999999988752 22589999964 45667777777
Q ss_pred HHhhccCCCC-------------hhhHHHHHHHHHHHh-C-CCcEEEEEeccCCCCccChhhhHhh-hcCCCCCcEEEEe
Q 043083 232 IEGLDESASS-------------LSEFQSLMSHIHRSI-E-GKKFFLVLDDVWDGDYNKWEPFFLY-LKNGLHGSKILVT 295 (468)
Q Consensus 232 ~~~l~~~~~~-------------~~~~~~l~~~l~~~l-~-~k~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~ilvT 295 (468)
+..+....+. ..+...+...+...+ . +.+++|||||++.-+......+... ++....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422111 012223333333333 2 6799999999987654444444434 4445567789899
Q ss_pred cCChhHH---hhhCCCCeeeCC----CCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 043083 296 TRNESVA---HMMGSTNIIFIE----QLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRS 368 (468)
Q Consensus 296 tR~~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~ 368 (468)
||...-. ..........+. +|+.+|+.+||...... +-..+....|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 111112344555 99999999999875421 113455678999999999999998877754
Q ss_pred CCcc----cccccc-cCCCchhhHh-hccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHH
Q 043083 369 KRSE----MWKVQE-IGQGLLTPLL-LSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMI 442 (468)
Q Consensus 369 ~~~~----~w~~~~-~~~~~~~~l~-~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~ 442 (468)
.... .|.... ....+...+. ..|..||+ +.+..+..+|+++. ++.+.+-.+. | .+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~~~~l~~~l~---~----------~~~ 293 (903)
T PRK04841 232 NNSSLHDSARRLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---MNDALIVRVT---G----------EEN 293 (903)
T ss_pred CCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---CCHHHHHHHc---C----------CCc
Confidence 4311 122211 1233455443 34889999 89999999999973 4544433322 1 113
Q ss_pred HHHHHHHHHHCCCccc
Q 043083 443 GEEYFNILAARSFFQE 458 (468)
Q Consensus 443 ~~~~~~~Lv~r~l~q~ 458 (468)
+.+.+++|.++++|..
T Consensus 294 ~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 294 GQMRLEELERQGLFIQ 309 (903)
T ss_pred HHHHHHHHHHCCCeeE
Confidence 4678999999998753
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.44 E-value=1.2e-11 Score=116.19 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=117.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhh---HHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSE---FQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~l~~~l~~~ 255 (468)
+..++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|+..++........ ...+...+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34589999999999999999999853311 11 12333 333457778888998888765432211 22333333333
Q ss_pred h-CCCcEEEEEeccCCCCccChhhhHhhhcC---CCCCcEEEEecCChhHHhhhC----------CCCeeeCCCCChHHH
Q 043083 256 I-EGKKFFLVLDDVWDGDYNKWEPFFLYLKN---GLHGSKILVTTRNESVAHMMG----------STNIIFIEQLAEEEC 321 (468)
Q Consensus 256 l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~e~ 321 (468)
. .+++.+||+||+|..+...++.+...... ......|++|.... ....+. ....+++++|+.++.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 3 67889999999988765566665533221 12233456666543 221111 134578999999999
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 322 CSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 322 ~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.+++...+...+......-..+..+.|++.|+|.|..|+.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764332211222345778999999999999999998866
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=9.4e-13 Score=120.92 Aligned_cols=195 Identities=21% Similarity=0.178 Sum_probs=100.9
Q ss_pred eeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH---
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI--- 231 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--- 231 (468)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999988643 2468999999999999999999983 322111344444433332211 1111
Q ss_pred -------HHhhccCC----------CChhhHHHHHHHHHHHh--CCCcEEEEEeccCCCC-c-cC----hhhhHhhhcC-
Q 043083 232 -------IEGLDESA----------SSLSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGD-Y-NK----WEPFFLYLKN- 285 (468)
Q Consensus 232 -------~~~l~~~~----------~~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~-~-~~----~~~l~~~l~~- 285 (468)
...+.... ............+.+.+ .+++++||+||+.... . .. ...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11121110 01112222223333333 2445999999996654 0 11 1223333333
Q ss_pred -CCCCcEEEEecCChhHHhh--------hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 286 -GLHGSKILVTTRNESVAHM--------MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 286 -~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
......+++++....+... .+....+.+++|+.+++++++...+... ..- +.-.....+|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 2223334455444444332 2334559999999999999999875322 111 223455689999999999
Q ss_pred HHHHH
Q 043083 357 VAAKV 361 (468)
Q Consensus 357 lai~~ 361 (468)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98865
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=9.2e-12 Score=123.72 Aligned_cols=301 Identities=14% Similarity=0.066 Sum_probs=169.6
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.+..++||++|+++|...|..... +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 446799999999999998854321 123456789999999999999999985332221233677777777788899999
Q ss_pred HHHhhccC-CC-ChhhHHHHHHHHHHHhC--CCcEEEEEeccCCCC-ccChhhhHhhhc--CCCCC--cEEEEecCChhH
Q 043083 231 IIEGLDES-AS-SLSEFQSLMSHIHRSIE--GKKFFLVLDDVWDGD-YNKWEPFFLYLK--NGLHG--SKILVTTRNESV 301 (468)
Q Consensus 231 i~~~l~~~-~~-~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~g--s~ilvTtR~~~v 301 (468)
++.++... .+ ...+.+++...+.+.+. +++.+||||+++... ....+.+...+. ....+ ..+|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 99998752 11 22345666667777664 456899999997643 111222322221 11123 236666655433
Q ss_pred HhhhC-------CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHH----cCCchHHHHHHHHHhc--C
Q 043083 302 AHMMG-------STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHK----CKGLPVAAKVIGNLLR--S 368 (468)
Q Consensus 302 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~----~~G~Plai~~~~~~L~--~ 368 (468)
...+. ....+.+.+++.++..+++..++...-. ...-..+....|++. .|..+.++..+-.+.. .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~--~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY--PGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc--cCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22211 1346789999999999999987632210 001112333444444 4557777776643321 1
Q ss_pred -CCcccccccc---cCCC-chhhHhhccccCCChhhhhHHHhhhcCC-CC-CCccCHHHHHHH--HHHcCCCCCCCCCCH
Q 043083 369 -KRSEMWKVQE---IGQG-LLTPLLLSYNDLPSNSMVKRCFSYCTVF-PK-DCNMDKEELINL--WMAQDYLNAEEDEEM 439 (468)
Q Consensus 369 -~~~~~w~~~~---~~~~-~~~~l~~sy~~L~~~~~~k~cf~~ls~f-p~-~~~i~~~~Li~~--W~aeg~i~~~~~~~~ 439 (468)
.....-.... ..+. -...+.-.+..||. +.|..+..++.. .. ...+....+... .+++.+-. ...+.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~--~~~~~ 339 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY--EPRTH 339 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--CcCcH
Confidence 1110000000 0000 12234456788998 555554444322 21 134555555532 22322200 01122
Q ss_pred HHHHHHHHHHHHHCCCccccc
Q 043083 440 EMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 440 e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
.. ..+|+++|...|++....
T Consensus 340 ~~-~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 340 TR-FYEYINKLDMLGIINTRY 359 (394)
T ss_pred HH-HHHHHHHHHhcCCeEEEE
Confidence 23 356999999999998754
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.38 E-value=5e-12 Score=121.96 Aligned_cols=261 Identities=20% Similarity=0.136 Sum_probs=146.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+|+|+++.++.+...+..... .+.....+.|+|++|+|||+||+.+++.. ...+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEeccc-ccChHHHHHHH
Confidence 5799999999998877754221 12345678899999999999999999842 2221 1222111 11111122222
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcC-------------------CCCCcEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKN-------------------GLHGSKIL 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~il 293 (468)
..+ ++..+|+||+++.......+.+...+.. ..+.+-|.
T Consensus 98 ~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 98 TNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred Hhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 222 2234555565543221111112111110 11234466
Q ss_pred EecCChhHHhhhC--CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC-
Q 043083 294 VTTRNESVAHMMG--STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR- 370 (468)
Q Consensus 294 vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~- 370 (468)
.|++...+...+. ....+.+.+++.++..+++...+...+ ..-..+.+..|++.|+|.|-.+..+...+....
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG----VEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQ 231 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 6666544433221 134689999999999999998875432 122345678999999999976666555432110
Q ss_pred ccccc-c-cccCCCchhhHhhccccCCChhhhhHHHh-hhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Q 043083 371 SEMWK-V-QEIGQGLLTPLLLSYNDLPSNSMVKRCFS-YCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEEYF 447 (468)
Q Consensus 371 ~~~w~-~-~~~~~~~~~~l~~sy~~L~~~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~~ 447 (468)
...+. . ..........+...+..|++ ..+..+. .+..|+.+ .+..+.+.... +. ..+.+++.+
T Consensus 232 ~~~~~~I~~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~-~~~~~~~~~ 297 (328)
T PRK00080 232 VKGDGVITKEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GE-ERDTIEDVY 297 (328)
T ss_pred HcCCCCCCHHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CC-CcchHHHHh
Confidence 00000 0 01111223445667778887 6666665 66777766 57777765554 11 123455567
Q ss_pred H-HHHHCCCccccc
Q 043083 448 N-ILAARSFFQEFK 460 (468)
Q Consensus 448 ~-~Lv~r~l~q~~~ 460 (468)
+ .|++.+|++...
T Consensus 298 e~~Li~~~li~~~~ 311 (328)
T PRK00080 298 EPYLIQQGFIQRTP 311 (328)
T ss_pred hHHHHHcCCcccCC
Confidence 7 999999997433
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=6.6e-11 Score=116.40 Aligned_cols=302 Identities=13% Similarity=0.084 Sum_probs=169.3
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc-cc--c-CceEEEEeCCCcCHHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK-RN--F-ENVIWVCVSDTFEEIR 226 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~--F-~~~~wv~~~~~~~~~~ 226 (468)
.+..++||++|+++|...|..... +.....+.|+|++|+|||++++.+++..... .. . -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864321 1344578999999999999999999742211 11 1 1367888877778888
Q ss_pred HHHHHHHhhc---cCCC-ChhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccChhh-hHhhhcC----CC--CCcEEE
Q 043083 227 VAKAIIEGLD---ESAS-SLSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKWEP-FFLYLKN----GL--HGSKIL 293 (468)
Q Consensus 227 ~~~~i~~~l~---~~~~-~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~-l~~~l~~----~~--~gs~il 293 (468)
++..|+.++. ...+ ...+..++...+.+.+ .+++++||||+++.-.. .... +...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG-DDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-CCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999884 2211 1123344555555555 35678999999976521 1112 2221111 11 233455
Q ss_pred EecCChhHHhhhC-----C--CCeeeCCCCChHHHHHHHHHhhcCC-CCCCCccchHHHHHHHHHHcCCchHHHHHHH-H
Q 043083 294 VTTRNESVAHMMG-----S--TNIIFIEQLAEEECCSLLERLAFFG-RSFEDREKLEPMGRKIAHKCKGLPVAAKVIG-N 364 (468)
Q Consensus 294 vTtR~~~v~~~~~-----~--~~~~~l~~L~~~e~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~-~ 364 (468)
++|........+. . ...+.+++++.++..+++..++... ....-.++..+.+..++..+.|.|..+..+. .
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554443221111 1 2468899999999999999886311 1111222333445556777788885544332 2
Q ss_pred Hh--c-CCCcccccccccC---CC-chhhHhhccccCCChhhhhHHHhhhcCC--CCCCccCHHHHHHHHH--HcCCCCC
Q 043083 365 LL--R-SKRSEMWKVQEIG---QG-LLTPLLLSYNDLPSNSMVKRCFSYCTVF--PKDCNMDKEELINLWM--AQDYLNA 433 (468)
Q Consensus 365 ~L--~-~~~~~~w~~~~~~---~~-~~~~l~~sy~~L~~~~~~k~cf~~ls~f--p~~~~i~~~~Li~~W~--aeg~i~~ 433 (468)
+. . .+....-...... +. -.....-++..||. +.+..+..+... ..+..+....+...+- ++.+ ..
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~ 326 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPT--HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-GV 326 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-CC
Confidence 11 1 1110000000000 00 11233445678887 666555544321 1344566666666332 2211 11
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCccccc
Q 043083 434 EEDEEMEMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 434 ~~~~~~e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
... ......++++.|...||+....
T Consensus 327 -~~~-~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 327 -DPL-TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred -CCC-cHHHHHHHHHHHHhcCCeEEEE
Confidence 111 2345677999999999999864
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.36 E-value=7.3e-12 Score=119.90 Aligned_cols=273 Identities=19% Similarity=0.170 Sum_probs=145.3
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+|+|+++.++.|..++..... ....+..+.|+|++|+|||+||+.+++. ....+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHH
Confidence 3689999999999888854321 1234556889999999999999999874 22221 1122111111111 11222
Q ss_pred HhhccCCC-ChhhH----HHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhhhC-
Q 043083 233 EGLDESAS-SLSEF----QSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMG- 306 (468)
Q Consensus 233 ~~l~~~~~-~~~~~----~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 306 (468)
..+....- -.++. ....+.+...+.+.+..+|+++..+.. .+. .. ..+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ec---CCCeEEEEecCCccccCHHHHh
Confidence 22211100 00000 111223333344444444444432211 110 01 122455666777654433221
Q ss_pred -CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCC----CcccccccccCC
Q 043083 307 -STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSK----RSEMWKVQEIGQ 381 (468)
Q Consensus 307 -~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~----~~~~w~~~~~~~ 381 (468)
....+.+.+++.++..+++.+.+.... ..-..+....|++.|+|.|..+..++..+... ....-. .....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~----~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it-~~~v~ 223 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLN----VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN-RDIAL 223 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC-HHHHH
Confidence 134678999999999999998875322 12234567889999999998776655543210 000000 00111
Q ss_pred CchhhHhhccccCCChhhhhHHHh-hhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH-HHHHCCCcccc
Q 043083 382 GLLTPLLLSYNDLPSNSMVKRCFS-YCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEEYFN-ILAARSFFQEF 459 (468)
Q Consensus 382 ~~~~~l~~sy~~L~~~~~~k~cf~-~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~~~-~Lv~r~l~q~~ 459 (468)
.....+..+|..|+. +.+..|. .+..|+.+ .+..+.+.... +.+ ...++..++ .|++++|++..
T Consensus 224 ~~l~~l~~~~~~l~~--~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~-~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 224 KALEMLMIDELGLDE--IDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GED-ADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHhCCCCCCCCH--HHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCC-cchHHHhhhHHHHHcCCcccC
Confidence 122335667888887 6666665 55667544 45555554444 122 234677788 69999999643
No 11
>PF05729 NACHT: NACHT domain
Probab=99.25 E-value=7.7e-11 Score=102.02 Aligned_cols=143 Identities=18% Similarity=0.273 Sum_probs=90.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccc----cCceEEEEeCCCcCHH---HHHHHHHHhhccCCCChhhHHHHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIWVCVSDTFEEI---RVAKAIIEGLDESASSLSEFQSLMSHIH 253 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 253 (468)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|..+....... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 47899999999999999998875333322 4456777766643322 3333333333222111 111 222
Q ss_pred HHh-CCCcEEEEEeccCCCCcc-------Chhh-hHhhhcC-CCCCcEEEEecCChhH---HhhhCCCCeeeCCCCChHH
Q 043083 254 RSI-EGKKFFLVLDDVWDGDYN-------KWEP-FFLYLKN-GLHGSKILVTTRNESV---AHMMGSTNIIFIEQLAEEE 320 (468)
Q Consensus 254 ~~l-~~k~~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~e 320 (468)
..+ ..++++||||+++..... .+.. +...++. ..+++++++|||.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 578999999999664321 1222 3333443 3668999999999766 3334445689999999999
Q ss_pred HHHHHHHhh
Q 043083 321 CCSLLERLA 329 (468)
Q Consensus 321 ~~~Lf~~~a 329 (468)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 12
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.23 E-value=6.6e-10 Score=113.34 Aligned_cols=264 Identities=19% Similarity=0.233 Sum_probs=172.2
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccCCC
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDESAS 240 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 240 (468)
+.+|++.|... .+.+.+.|..|+|.|||||+.+... .. ..=..+.|.++.+ +.++..+...++..++...+
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 44666666533 3689999999999999999998875 11 1223499999876 56788899999998875444
Q ss_pred Ch-------------hhHHHHHHHHHHHhC--CCcEEEEEeccCCCCccChhh-hHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 241 SL-------------SEFQSLMSHIHRSIE--GKKFFLVLDDVWDGDYNKWEP-FFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 241 ~~-------------~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
.. .+...+...+...+. .+++.+||||.+--....... +...+....++-.+++|||+..-...
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 32 223345555555443 568999999997654444444 44445567778899999998743221
Q ss_pred h---CCCCeee----CCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCccccc--
Q 043083 305 M---GSTNIIF----IEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMWK-- 375 (468)
Q Consensus 305 ~---~~~~~~~----l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~-- 375 (468)
- -....++ .-.|+.+|+.++|..... .+-.....+.+.+..+|-+-|+..++=.++.+.+..-.
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 0 0011222 235899999999987641 22223456789999999999999998888733311111
Q ss_pred -ccccCCCchhh-HhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHC
Q 043083 376 -VQEIGQGLLTP-LLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEEYFNILAAR 453 (468)
Q Consensus 376 -~~~~~~~~~~~-l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~~~~Lv~r 453 (468)
+......+... ..--++.||+ ++|..++-||+++.= .- .|+..- +-++.+...+++|-++
T Consensus 249 ~LsG~~~~l~dYL~eeVld~Lp~--~l~~FLl~~svl~~f---~~-eL~~~L------------tg~~ng~amLe~L~~~ 310 (894)
T COG2909 249 GLSGAASHLSDYLVEEVLDRLPP--ELRDFLLQTSVLSRF---ND-ELCNAL------------TGEENGQAMLEELERR 310 (894)
T ss_pred hccchHHHHHHHHHHHHHhcCCH--HHHHHHHHHHhHHHh---hH-HHHHHH------------hcCCcHHHHHHHHHhC
Confidence 11111122222 2345788999 899999999999762 22 222221 1223567789999999
Q ss_pred CCccc
Q 043083 454 SFFQE 458 (468)
Q Consensus 454 ~l~q~ 458 (468)
+||-.
T Consensus 311 gLFl~ 315 (894)
T COG2909 311 GLFLQ 315 (894)
T ss_pred CCcee
Confidence 98864
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=5.5e-09 Score=111.92 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=159.9
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc---eEEEEeCCCcCH---HHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN---VIWVCVSDTFEE---IRV 227 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~---~~wv~~~~~~~~---~~~ 227 (468)
.++||+.|++.|...+..... +...++.+.|.+|||||+|+++|.. .+.+.+.. ..+-....+... .+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 368999999999999876653 4566999999999999999999987 33332111 111111122111 223
Q ss_pred HHHHHHhh-------------------ccCCCC----------------------hhh-----HHHHHHHHHHHh-CCCc
Q 043083 228 AKAIIEGL-------------------DESASS----------------------LSE-----FQSLMSHIHRSI-EGKK 260 (468)
Q Consensus 228 ~~~i~~~l-------------------~~~~~~----------------------~~~-----~~~l~~~l~~~l-~~k~ 260 (468)
++++..++ +..... ... ....+..+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333322 111000 000 011233344444 4569
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCCCC----CcEEEEecCChhH----HhhhCCCCeeeCCCCChHHHHHHHHHhhcCC
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNGLH----GSKILVTTRNESV----AHMMGSTNIIFIEQLAEEECCSLLERLAFFG 332 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~ilvTtR~~~v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 332 (468)
.++|+||+++.|....+.+...+..... ...+..+...... -........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999988877766665554443221 1123333322221 1222335789999999999999999876321
Q ss_pred CCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC-------cccccccc-------cCCCchhhHhhccccCCChh
Q 043083 333 RSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR-------SEMWKVQE-------IGQGLLTPLLLSYNDLPSNS 398 (468)
Q Consensus 333 ~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~-------~~~w~~~~-------~~~~~~~~l~~sy~~L~~~~ 398 (468)
.....+....|+++..|+|+.+..+-..|.... ...|.... ..+++...+..-.+.||.
T Consensus 236 -----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~-- 308 (849)
T COG3899 236 -----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG-- 308 (849)
T ss_pred -----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH--
Confidence 233456678999999999999999999998864 34454321 112233457778999999
Q ss_pred hhhHHHhhhcCCCCCCccCHHHHHHHH
Q 043083 399 MVKRCFSYCTVFPKDCNMDKEELINLW 425 (468)
Q Consensus 399 ~~k~cf~~ls~fp~~~~i~~~~Li~~W 425 (468)
..|+.+...|++... |+...|-..|
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHH
Confidence 899999999998765 4455555555
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=99.01 E-value=5e-09 Score=95.50 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=98.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
.+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999984 3222334667765421 00000 1111121 3
Q ss_pred cEEEEEeccCCCC-ccChhh-hHhhhcCC-CCCcEEE-EecCC---------hhHHhhhCCCCeeeCCCCChHHHHHHHH
Q 043083 260 KFFLVLDDVWDGD-YNKWEP-FFLYLKNG-LHGSKIL-VTTRN---------ESVAHMMGSTNIIFIEQLAEEECCSLLE 326 (468)
Q Consensus 260 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 326 (468)
.-+|+|||+|... ...|+. +...+... ..|..+| +|+.. +.+...+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998742 234553 44444322 2355554 55544 3455555556789999999999999999
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 327 RLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
+.+.... ..-.+++..-|++.+.|..-.+..+-..|
T Consensus 172 ~~a~~~~----l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRG----IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8886332 22335677889999999887777655544
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=2e-08 Score=103.60 Aligned_cols=298 Identities=13% Similarity=0.130 Sum_probs=162.8
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc---ccccC--ceEEEEeCCCcCHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV---KRNFE--NVIWVCVSDTFEEIR 226 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~ 226 (468)
+..+.||++|+++|...|...-. +.....++.|+|++|.|||++++.|.+.... ....+ .+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45688999999999888865432 1123357889999999999999999874211 11222 267888877778888
Q ss_pred HHHHHHHhhccCCCC-hhhHHHHHHHHHHHh-C--CCcEEEEEeccCCCCccChhhhHhhhcC-CCCCcEEEE--ecCCh
Q 043083 227 VAKAIIEGLDESASS-LSEFQSLMSHIHRSI-E--GKKFFLVLDDVWDGDYNKWEPFFLYLKN-GLHGSKILV--TTRNE 299 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l-~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~~ 299 (468)
++..|..++....+. ......+...+...+ . ....+||||+++......-+.|...+.. ...+++|++ +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999888544322 222333444444444 2 2346999999975432221223333321 223455444 44332
Q ss_pred hH--------HhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCc
Q 043083 300 SV--------AHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRS 371 (468)
Q Consensus 300 ~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~ 371 (468)
.. ...++ ...+...|++.++..+++..++......-....++-+|+.++...|-.-.||.++-.+......
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 21 11122 2346779999999999999988543222223333334444444445566677766555433221
Q ss_pred ccccccccCCCch--------hhHhhccccCCChhhhhHHHhhhcCCCC---CCccCHHHHHHHH--HHc--C-CCCCCC
Q 043083 372 EMWKVQEIGQGLL--------TPLLLSYNDLPSNSMVKRCFSYCTVFPK---DCNMDKEELINLW--MAQ--D-YLNAEE 435 (468)
Q Consensus 372 ~~w~~~~~~~~~~--------~~l~~sy~~L~~~~~~k~cf~~ls~fp~---~~~i~~~~Li~~W--~ae--g-~i~~~~ 435 (468)
. .. ....+. ..+.-....||. +.|-.+..+...-+ ...++...+.... +++ | .+. ..
T Consensus 992 s--kV--T~eHVrkAleeiE~srI~e~IktLPl--HqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG-v~ 1064 (1164)
T PTZ00112 992 Q--KI--VPRDITEATNQLFDSPLTNAINYLPW--PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG-MC 1064 (1164)
T ss_pred C--cc--CHHHHHHHHHHHHhhhHHHHHHcCCH--HHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC-CC
Confidence 1 10 001111 122334457887 55544432332111 2245555554433 222 1 111 11
Q ss_pred CCCHHHHHHHHHHHHHHCCCccccc
Q 043083 436 DEEMEMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 436 ~~~~e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
. ..+ ....|+.+|...|++-...
T Consensus 1065 p-lTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1065 S-NNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred C-cHH-HHHHHHHHHHhcCeEEecC
Confidence 1 122 5577999999999886543
No 16
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=1.5e-09 Score=89.95 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=80.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc---cccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK---RNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 255 (468)
..+++.|+|++|+|||++++.+.+..... ..-..++|++++...+...+...|+..++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45689999999999999999998742111 012347799998888999999999999998776655667777778887
Q ss_pred hCCC-cEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCC
Q 043083 256 IEGK-KFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 256 l~~k-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
+... ..+||+|+++.- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7544 459999999765 4333444433333 557778887765
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.95 E-value=6.8e-09 Score=97.63 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=94.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHH-HHHh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHI-HRSI 256 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l 256 (468)
+.+.-..+||++|+||||||+.+.. .....| ..++...+- ..++..+.+.- +...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~g-----------------vkdlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSG-----------------VKDLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEecccccc-----------------HHHHHHHHHHHHHHHh
Confidence 4677788999999999999999987 333343 223322221 22233333333 2233
Q ss_pred CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE--ecCChhHH---hhhCCCCeeeCCCCChHHHHHHHHHhhcC
Q 043083 257 EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV--TTRNESVA---HMMGSTNIIFIEQLAEEECCSLLERLAFF 331 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~ 331 (468)
.+++.+|++|.|+..+..+-+.|. |.-..|.-|+| ||.++... ...+...++.+++|+.++...++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 589999999999887765555444 44445776666 55555321 22344678999999999999999984422
Q ss_pred CC-CCC-Ccc-chHHHHHHHHHHcCCchH
Q 043083 332 GR-SFE-DRE-KLEPMGRKIAHKCKGLPV 357 (468)
Q Consensus 332 ~~-~~~-~~~-~~~~~~~~I~~~~~G~Pl 357 (468)
.. ... ... -.++....|+..++|--.
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 21 111 111 123456678888877543
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.94 E-value=1.1e-08 Score=101.66 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=105.7
Q ss_pred CceeeccchHHH---HHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNE---LLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
.+++|.+..+.. +..++.. .....+.|+|++|+||||||+.+++. .... |+.++.......
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~--- 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVK--- 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHH---
Confidence 357888776555 6666632 23457888999999999999999873 2222 222222111111
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE--ecCChhHH---h
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV--TTRNESVA---H 303 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~ 303 (468)
+...+.+..... ..+++.+|+||+++.......+.|...+.. |..+++ ||.+.... .
T Consensus 76 --------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 76 --------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred --------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 111222222211 246788999999987765555556655543 444444 34443211 1
Q ss_pred hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 304 MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 304 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
..+....+.+.+++.++...++.+.+..... ....-..+....|++.|+|.|..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1222467899999999999999986532111 00123356678899999999987655443
No 19
>PTZ00202 tuzin; Provisional
Probab=98.89 E-value=1.4e-07 Score=90.70 Aligned_cols=171 Identities=11% Similarity=0.111 Sum_probs=106.8
Q ss_pred cCCCcCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 147 TSLIDEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 147 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
..+.+.+.|+||+.|+..|...|..... ..++++.|+|++|+|||||++.+..... + ..++.... +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH
Confidence 3445567899999999999998864432 2456999999999999999999886322 2 23332233 6799
Q ss_pred HHHHHHHhhccCCCCh--hhHHHHHHHHHHHh-C-CCcEEEEEeccCCCCc-cChhhhHhhhcCCCCCcEEEEecCChhH
Q 043083 227 VAKAIIEGLDESASSL--SEFQSLMSHIHRSI-E-GKKFFLVLDDVWDGDY-NKWEPFFLYLKNGLHGSKILVTTRNESV 301 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~--~~~~~l~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v 301 (468)
++..++.+|+...... .-...+.+.+.+.- . +++.+||+-=-.-.+. ..+++.. .|.....-|.|++---.+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 9999999999743322 22344445444433 3 6677777653211110 1222221 23333446677765544443
Q ss_pred Hhh---hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 302 AHM---MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 302 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
... +..-..|.+++++.++|.++..+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 211 1224678899999999998887653
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.87 E-value=5e-08 Score=89.08 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=101.8
Q ss_pred chHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC
Q 043083 160 DEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA 239 (468)
Q Consensus 160 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 239 (468)
..++.+..++.. .....+.|+|++|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 24 ~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~-------- 81 (226)
T TIGR03420 24 ELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD-------- 81 (226)
T ss_pred HHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH--------
Confidence 345566665431 24568999999999999999999874 222233456665543211 00
Q ss_pred CChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc-C-hhhhHhhhcC-CCCCcEEEEecCChh---------HHhhhCC
Q 043083 240 SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN-K-WEPFFLYLKN-GLHGSKILVTTRNES---------VAHMMGS 307 (468)
Q Consensus 240 ~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~ 307 (468)
. .+...+.+ .-+|||||++..... . .+.+...+.. ...+..+|+||+... +...+..
T Consensus 82 ------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 0 01111222 348999999765432 2 3335544432 122447888887532 1222222
Q ss_pred CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 308 TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 308 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
...+++.+++.++...++...+.... ..--.+..+.|++.+.|+|..+..+...+
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45789999999999999987653211 12234566788889999999888765443
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.85 E-value=1.5e-08 Score=89.04 Aligned_cols=182 Identities=22% Similarity=0.243 Sum_probs=100.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+|+|-++-+..+.-.+..... .+..+..+.++|++|+||||||..+.+ .....|. +.+.+. .+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh---------
Confidence 5799988887776544432211 224678899999999999999999998 3444442 222211 00
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC--------CC-----------CcEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG--------LH-----------GSKIL 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~il 293 (468)
.. .++...+.+ + +++-+|.+|+++..+...-+.|..++.++ ++ -+-|=
T Consensus 88 --------k~---~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 --------KA---GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp --------SC---HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred --------hH---HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 01 111111211 2 34557888999876655445555555332 11 12355
Q ss_pred EecCChhHHhhhCC--CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhc
Q 043083 294 VTTRNESVAHMMGS--TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLR 367 (468)
Q Consensus 294 vTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 367 (468)
.|||...+...+.. .-..+++..+.+|-..++.+.+..- ..+-..+.+.+|+++|.|.|--..-+-+.++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 68887666554443 2345799999999999998876432 2333457789999999999987766655544
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.2e-07 Score=90.92 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=116.8
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcCh----hcccccCceEEEEe-CCCcCHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNND----EVKRNFENVIWVCV-SDTFEEIRVA 228 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~~ 228 (468)
+++|-+.-++.+..++... .-.....++|+.|+||||+|+.+++.. ....|+|...|... +......+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 5788888888888888533 245677899999999999998887631 12345555555432 22222222 1
Q ss_pred HHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH--hhhC
Q 043083 229 KAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA--HMMG 306 (468)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~~ 306 (468)
+++.+.+... -..+++-++|+|+++..+...++.|...+.....++.+|++|.+.+.. ...+
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222111 123566788889988777778999999999878889888888765422 1122
Q ss_pred CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 307 STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
....+.+.+++.++....+.+.... ...+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 2468899999999998888665310 1123466788999999875543
No 23
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.84 E-value=6.7e-09 Score=91.64 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=32.2
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.|+||+++++++...|... .....+.+.|+|++|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 2356789999999999999999998884
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.3e-07 Score=88.71 Aligned_cols=205 Identities=16% Similarity=0.169 Sum_probs=133.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-c-eEEEEeCCCcCHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-N-VIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~~~~~~~~~~~~~ 230 (468)
..+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.+.+. +..... . +++|++-...+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3489999999999988765442 223344999999999999999999984 433322 1 789999999999999999
Q ss_pred HHHhhccCCCChhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccChhhhHhhhcCCCC-CcE--EEEecCChhHHhh-
Q 043083 231 IIEGLDESASSLSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLH-GSK--ILVTTRNESVAHM- 304 (468)
Q Consensus 231 i~~~l~~~~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--ilvTtR~~~v~~~- 304 (468)
|+.+++..+.......+....+.+.+ .++.+++|||++.......-+.+...+..... +++ +|..+-+......
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 99999755444455566666777766 46789999999966432222445555543222 343 3444444333222
Q ss_pred -------hCCCCeeeCCCCChHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHcC-CchHHHHHH
Q 043083 305 -------MGSTNIIFIEQLAEEECCSLLERLAFFGR-SFEDREKLEPMGRKIAHKCK-GLPVAAKVI 362 (468)
Q Consensus 305 -------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~-~~~~~~~~~~~~~~I~~~~~-G~Plai~~~ 362 (468)
++. ..+..+|-+.++-...+..++-..- .....+..-+++..++..-+ -.-.||..+
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222 3378899999999999998874321 11223333444444444444 455555554
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=2e-07 Score=91.06 Aligned_cols=199 Identities=14% Similarity=0.145 Sum_probs=113.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+.-++.+...+.... -...+.++|+.|+||||+|+.+.+........... .+....+...+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 468999998888888885432 34567899999999999999888732111111000 0000000011100000
Q ss_pred Hh---hccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhh-h
Q 043083 233 EG---LDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHM-M 305 (468)
Q Consensus 233 ~~---l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~ 305 (468)
-. +... .....+..++.+.+... ..+++-++|+|+++..+...++.+...+......+++|++|.+. .+... .
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 00 0000 01112222222222111 12455699999998876666778888887666677777776543 33222 2
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+....+++.+++.++....+...+...+ ..-.++.+..|++.++|.|..+....
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2246789999999999998887664322 11224566789999999887554433
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=1.6e-07 Score=91.28 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=112.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 231 (468)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++..... ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 46889999999988888532 334578999999999999999887321 12222 2344444321100 00000
Q ss_pred H------HhhccC----CCChhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh
Q 043083 232 I------EGLDES----ASSLSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 232 ~------~~l~~~----~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
. ..++.. .........+........ .+.+-+||+||++.........|...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 000111111211222221 2345589999997654444555666665545567787777543
Q ss_pred h-HHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 300 S-VAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 300 ~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
. +...+ .....+.+.+++.++...++...+...+. .-..+....+++.++|.+-.+.....
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 22222 22457889999999999999887543221 12346678899999998776654433
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=4.2e-08 Score=102.58 Aligned_cols=199 Identities=14% Similarity=0.151 Sum_probs=117.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH--
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA-- 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-- 230 (468)
.+++|-+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....... .+..+.....+...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCchHHHHHhcCCC
Confidence 468999999988888886432 34556899999999999999998742111110000 00000000000000
Q ss_pred -HHHhhccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhh
Q 043083 231 -IIEGLDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMM 305 (468)
Q Consensus 231 -i~~~l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~ 305 (468)
.+..+... .....++.++...+... ..+++-++|||+++..+...++.|+..+..-...+++|++|.+. .+. ...
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 00000000 01122233333333221 24677799999999888778888888887665667766666553 332 222
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
.....+++.+|+.++...++.+.+-..+ .....+.+..|++.++|.|.-+..+.
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2246899999999999999988663321 12234567789999999887555443
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=5e-08 Score=98.44 Aligned_cols=198 Identities=20% Similarity=0.168 Sum_probs=114.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+...+.|..++.... -...+.++|++|+||||+|+.+++.......+....|.|.+.. ........-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 358998888888888775432 3456799999999999999988874322122222223221110 0000000000
Q ss_pred HhhccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHHhhh-CCC
Q 043083 233 EGLDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVAHMM-GST 308 (468)
Q Consensus 233 ~~l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~ 308 (468)
..+... .....+..++...+... ..+++-++|||+++..+...++.|...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 11122223333322221 2356679999999877666788888888765555555555543 3332222 224
Q ss_pred CeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 309 NIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 309 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
..+++.+++.++....+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 57899999999999999987643321 1134567889999999986554
No 29
>PRK04195 replication factor C large subunit; Provisional
Probab=98.77 E-value=5e-07 Score=91.80 Aligned_cols=243 Identities=16% Similarity=0.145 Sum_probs=136.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.++.++++..|+..-.. +...+.+.|+|++|+||||+|+.+++.. .|+ ++-++.+...+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 4689999999999999864321 1226789999999999999999999842 122 3334444432222 222222
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc----cChhhhHhhhcCCCCCcEEEEecCChh-HHh-hh-
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY----NKWEPFFLYLKNGLHGSKILVTTRNES-VAH-MM- 305 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~- 305 (468)
....... .....++-+||||+++.... ..+..+...+... ++.||+|+.+.. ... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2211110 01113678999999976432 2355566655532 344666664431 111 11
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCcc--c--cc---ccc
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSE--M--WK---VQE 378 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~--~--w~---~~~ 378 (468)
.....+.+.+++..+....+...+...+. . -..+....|++.++|..-.+......+...... . -+ ..+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi-~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d 225 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGI-E---CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRD 225 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCC
Confidence 22467899999999999988877643221 1 124667889999999877666544444332100 0 00 022
Q ss_pred cCCCchhhHhhccc-cCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCC
Q 043083 379 IGQGLLTPLLLSYN-DLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNA 433 (468)
Q Consensus 379 ~~~~~~~~l~~sy~-~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~ 433 (468)
...+++.++..-+. .-+. .....+..+ .++. ..+-.|+.|.+...
T Consensus 226 ~~~~if~~l~~i~~~k~~~--~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 226 REESIFDALDAVFKARNAD--QALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCCCHHHHHHHHHCCCCHH--HHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 23445555554443 1111 233322222 2333 35778999999764
No 30
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=2.3e-07 Score=95.35 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=116.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH-
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI- 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 231 (468)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+.......++. ..++.+.+...+...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHHHHHHhcCCC
Confidence 468999999999998885332 3456679999999999999887763211111100 0011111111110000
Q ss_pred HHhhccCC---CChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH-H-hhh
Q 043083 232 IEGLDESA---SSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV-A-HMM 305 (468)
Q Consensus 232 ~~~l~~~~---~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~~ 305 (468)
..-+.... ....+..++++..... ..++.-++|||+++..+...|+.|+..|..-..+.++|+||.+..- . ...
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 00000000 0111222222222111 1345568999999988777788888888776667788887776532 2 122
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHHHh
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGNLL 366 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~~L 366 (468)
+....+.+..++.++..+.+.+.+...+ ..-..+....|++.++|... ++..+-..+
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg----I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEER----IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2246789999999999999988764322 11234566789999998664 555544433
No 31
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=4.9e-08 Score=80.43 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
+++.|.|+.|+|||||+++++.+.. ....+++++..+........ .+ +.+.+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 5899999999999999999887422 23457777666532211000 00 2233333344478
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhh------hCCCCeeeCCCCChHHH
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM------MGSTNIIFIEQLAEEEC 321 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 321 (468)
.+|+||++... ..|......+.+..+..+|++|+........ .+....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999654 5788877777665567889999998765522 12245678999998774
No 32
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.74 E-value=4.4e-06 Score=86.92 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=121.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc---CceEEEEeCCC---cCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---ENVIWVCVSDT---FEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~---~~~~~ 226 (468)
+.++|++..+..+...+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35899999999888777432 34569999999999999999998754333322 12345544321 12222
Q ss_pred HHHHH---------------HHhhccCC------------------CChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc
Q 043083 227 VAKAI---------------IEGLDESA------------------SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY 273 (468)
Q Consensus 227 ~~~~i---------------~~~l~~~~------------------~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~ 273 (468)
+...+ +...+... .... ....+..+.+.+++++++++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 11111000 0001 12346778888888889888888877766
Q ss_pred cChhhhHhhhcCCCCCcEEEE--ecCChhH-Hhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHH
Q 043083 274 NKWEPFFLYLKNGLHGSKILV--TTRNESV-AHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIA 349 (468)
Q Consensus 274 ~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~ 349 (468)
..|..+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++++.+..... .-..++...|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v----~ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV----HLAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Confidence 778887776766655555555 5664431 1111 12346789999999999999987643211 11245556677
Q ss_pred HHcCCchHHHHHHHHH
Q 043083 350 HKCKGLPVAAKVIGNL 365 (468)
Q Consensus 350 ~~~~G~Plai~~~~~~ 365 (468)
+.+..-+.++..++.+
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 7666667777766544
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.1e-07 Score=94.54 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=115.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH---
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK--- 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~--- 229 (468)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++........... .+..+.+...+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~---pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST---PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC---CCccCHHHHHHhcCCC
Confidence 468999999999999886432 35678999999999999999887631111000000 0000000000000
Q ss_pred -HHHHhhcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HH-hh
Q 043083 230 -AIIEGLDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VA-HM 304 (468)
Q Consensus 230 -~i~~~l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~ 304 (468)
.++. +.. ......+..++...+... ..++.-++|+|+++..+...++.|...+.....+.++|++|.+.. +. ..
T Consensus 87 pDviE-IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIE-IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEE-ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 0000 000 001112222222222111 235667899999988776777888888876666777777776532 22 22
Q ss_pred hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 305 MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 305 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.+....+++.+++.++....+.+.+...+ ..--.+....|++.++|.+..+..+
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEg----I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQ----IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23356889999999999999887764322 1222455678999999988655543
No 34
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=8.1e-08 Score=80.94 Aligned_cols=125 Identities=18% Similarity=0.110 Sum_probs=72.8
Q ss_pred eeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhh
Q 043083 156 CGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGL 235 (468)
Q Consensus 156 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 235 (468)
.|++..++.+...+... ..+.+.|+|++|+|||+|++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 36778888888887542 345789999999999999999998432 222346677655533322211111000
Q ss_pred ccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC------CCCcEEEEecCChh
Q 043083 236 DESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG------LHGSKILVTTRNES 300 (468)
Q Consensus 236 ~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~~~ 300 (468)
............++.+|++||++.........+...+... ..+..+|+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999754222223344444322 35778888888654
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=3e-07 Score=93.25 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=113.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc--cCceEEEEeCCCcCHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN--FENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-... -.....-.++.+ .....
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----RACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----HHHHH
Confidence 468999999999998886432 3456789999999999999888763211000 000000000000 00111
Q ss_pred HHH-----hhccC---CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hh
Q 043083 231 IIE-----GLDES---ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ES 300 (468)
Q Consensus 231 i~~-----~l~~~---~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 300 (468)
|.. -+... .....+..++.+.+... ..++.-++|||+++..+...++.|+..|..-..++.+|++|.+ ..
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 100 00000 01112222232222211 2456679999999988877888888888765556665555554 43
Q ss_pred HHh-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 301 VAH-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 301 v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
+.. ..+....+.+..++.++..+.+.+.+...+ .....+....|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg----i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG----IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332 122246789999999999998887653221 1112345678999999999765544
No 36
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=4.3e-07 Score=87.60 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=116.7
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc--ccCceEEEEeCCCcCHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR--NFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~ 229 (468)
...++|-+.....+...+.... ....+.|+|+.|+||||+|..+.+...-.. .+... ....+.......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3578999999999998886432 456789999999999999988776311100 01110 0000111111222
Q ss_pred HHHHh-------hc----cCC---CChhhHHHHHHHHHHHh-----CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCc
Q 043083 230 AIIEG-------LD----ESA---SSLSEFQSLMSHIHRSI-----EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGS 290 (468)
Q Consensus 230 ~i~~~-------l~----~~~---~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 290 (468)
.+... +. ... .....++++. .+.+++ .++.-++|+|+++..+....+.|...+.....++
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22221 10 000 0111233332 333333 3567799999999888777888888887654455
Q ss_pred EEEEec-CChhHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 291 KILVTT-RNESVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 291 ~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
.+|++| +...+... .+....+.+.+++.++...++.+.... .. ...+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544444 44333221 122468999999999999999874311 11 124456789999999998766544
No 37
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=7.4e-07 Score=89.70 Aligned_cols=200 Identities=18% Similarity=0.150 Sum_probs=115.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 231 (468)
.+++|-+.-+..|...+.... -...+.++|+.|+||||+|+.+++...-...... .-+..+..+.+...+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 367898888888877665332 3467899999999999999998873211111000 0000111111101100000
Q ss_pred ---HHhhcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE-ecCChhHHhhh
Q 043083 232 ---IEGLDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV-TTRNESVAHMM 305 (468)
Q Consensus 232 ---~~~l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~ 305 (468)
+..+.. ......++.++.+..... +.+++-++|+|+++..+...++.|...+......+.+|+ ||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000000 011122233333222211 245677999999998777788888888877666666655 44444443322
Q ss_pred -CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 306 -GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 306 -~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
.....+++.+++.++....+...+...+. .-..+....|++.++|.+.-+..
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22457899999999999999988743221 11235567799999998765543
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.68 E-value=7.5e-07 Score=85.88 Aligned_cols=184 Identities=14% Similarity=0.067 Sum_probs=108.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe--CCCcCHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV--SDTFEEIRVAKA 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~ 230 (468)
.+++|++..++.+..++... ..+.+.|+|++|+||||+++.+++.. ....+.. .++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchH-HHHH
Confidence 45889999999999888532 23457999999999999999998742 1112211 12222 2211111 1111
Q ss_pred HHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHh-hhCCC
Q 043083 231 IIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAH-MMGST 308 (468)
Q Consensus 231 i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~ 308 (468)
.+..+....+ .....+-++++|+++.........|...+......+.+|+++... .+.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001345689999997654444556776666555566777776432 1111 11123
Q ss_pred CeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 309 NIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 309 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
..+++.+++.++....+...+...+. .-..+....+++.++|.+.-+....
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46899999999999998887643221 1234567889999999887754433
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.6e-07 Score=90.23 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=114.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc-------------------cccCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK-------------------RNFENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 213 (468)
.+++|-+..++.|...+... .....+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46889999898888888532 234567899999999999999887621100 011122
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+++...... ...+...+.+.+... ..+++-++|+|+++..+...++.|...+......+.+
T Consensus 91 ieidaas~~------------------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRT------------------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeeccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111 112223333333221 2466779999999887777788888888876566666
Q ss_pred EEecCC-hhHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 043083 293 LVTTRN-ESVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGN 364 (468)
Q Consensus 293 lvTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 364 (468)
|++|.+ ..+. ...+....+++.+++.++....+.+.+...+ ..........|++.++|.+. ++..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 655543 3333 2223356889999999998888887553221 12234556789999999775 4444433
No 40
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=6.9e-07 Score=91.94 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=116.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+.-+..|...+.... -...+.++|+.|+||||+|+.+.+...-...+.. ..++.+ .....|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 468998888888888885322 3455789999999999999988773211111000 001111 1111111
Q ss_pred Hh-------hccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH
Q 043083 233 EG-------LDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA 302 (468)
Q Consensus 233 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 302 (468)
.. +... .....+..++.+.+... ..++.-++|||+++..+...++.|+..+..-...+++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 01122333333333221 24667799999999888778888888887765566666665553 332
Q ss_pred -hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 303 -HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 303 -~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
...+....+.+.+++.++....+.+.+...+ ..........|++.++|.+.-+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222356899999999999999987653221 11223556789999999887555544
No 41
>PRK08727 hypothetical protein; Validated
Probab=98.64 E-value=1.4e-06 Score=79.68 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=91.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
..+.|+|..|+|||+|++.+++. .......+.|+++.+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 45999999999999999999874 333333466775432 111110 11111 1 233
Q ss_pred EEEEEeccCCCCc-cChhh-hHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHHHHh
Q 043083 261 FFLVLDDVWDGDY-NKWEP-FFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 261 ~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
-+|||||+..... ..|.. +...+.. ...|..||+||+... +...+.....+++++++.++-..+++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 5899999965321 23432 3333322 123566999998632 2223333568899999999999999987
Q ss_pred hcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 329 AFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
+...+ ..-..+....|++.++|..-.+..+
T Consensus 175 a~~~~----l~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 175 AQRRG----LALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHcC----CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 64321 2233566788999998876666433
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.64 E-value=1.6e-06 Score=84.99 Aligned_cols=183 Identities=13% Similarity=0.130 Sum_probs=112.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc--c------------------ccCc
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK--R------------------NFEN 212 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~------------------~F~~ 212 (468)
.+++|.+..++.+..++.... -...+.++|++|+|||++|+.+.....-. . +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 468999999999998885432 34578899999999999998877531100 0 111
Q ss_pred eEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcE
Q 043083 213 VIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSK 291 (468)
Q Consensus 213 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 291 (468)
.+++..+... ...+..++.+.+... ..+++-++|+|+++.......+.+...+......+.
T Consensus 88 ~~~~~~~~~~------------------~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNN------------------GVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccC------------------CHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1222211111 111122222222211 234566899999976655566777777766555667
Q ss_pred EEEecCChh-HHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 292 ILVTTRNES-VAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 292 ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+|++|.+.. +... ......+++.+++.++....+...+...+. .-..+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 767765543 2221 222457889999999999998887643221 1124667889999999997666554
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.63 E-value=1.6e-06 Score=79.34 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=95.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|++|+|||+|++.+++... ..-..+.++++..... ...++.+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 35789999999999999999887422 2223356665543100 0011111111 1
Q ss_pred cEEEEEeccCCCCc-cChhh-hHhhhcCC-CCC-cEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHHH
Q 043083 260 KFFLVLDDVWDGDY-NKWEP-FFLYLKNG-LHG-SKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLLE 326 (468)
Q Consensus 260 ~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 326 (468)
--+|+|||++.... ..|+. +...+... ..| .++|+||+... +...+.....+++.+++.++-.++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 24899999965322 24443 32333211 123 46999998642 23344556789999999999999998
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 327 RLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
+.+...+ ..-.+++..-|++.+.|..-.+..+-..|
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8664221 22345778889999998877766655444
No 44
>PLN03025 replication factor C subunit; Provisional
Probab=98.63 E-value=7.4e-07 Score=85.67 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=107.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 231 (468)
.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++.. ....|.. ++-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 3578888877777776643 233457799999999999999988732 1222221 2222222221111 12222
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhh-hCCCC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHM-MGSTN 309 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~ 309 (468)
+..+..... ..-.++.-+++||+++.......+.|...+......+++++++... .+... .+...
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 211110000 0002456699999998876555566666665544567777766543 22111 11235
Q ss_pred eeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 310 IIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
.+++.+++.++....+...+...+. .-..+....|++.++|..-.+...-
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999998887643221 1124567889999999775554433
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.62 E-value=4.9e-07 Score=94.89 Aligned_cols=175 Identities=17% Similarity=0.243 Sum_probs=98.6
Q ss_pred CceeeccchHH---HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKN---ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
.+++|.+..+. .+...+.. .....+.|+|++|+||||||+.+++. ...+|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 46889887764 34444432 24556789999999999999999973 333331 111110 000
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEe--cCChh--HHh
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVT--TRNES--VAH 303 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tR~~~--v~~ 303 (468)
.+...........+ .+++.+|+|||++..+...++.|...+.. |+.++++ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhh
Confidence 11111122222222 24677999999987665555556554433 5545553 33331 111
Q ss_pred -hhCCCCeeeCCCCChHHHHHHHHHhhcCCC---CCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 304 -MMGSTNIIFIEQLAEEECCSLLERLAFFGR---SFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 304 -~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~---~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
..+....+.+++|+.++...++.+.+.... ......-..+....|++.+.|..--+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 112245789999999999999988653100 001112234566778888888654333
No 46
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.1e-06 Score=83.32 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=114.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc--------eEEEEeCCCcCH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN--------VIWVCVSDTFEE 224 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--------~~wv~~~~~~~~ 224 (468)
.+++|.+...+.|.+.+.... -...+.++|+.|+||+++|..+.+...-...... ..-+| ...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c--- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDH--- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCC---
Confidence 478999988888988886432 3556899999999999999777653111110000 00000 000
Q ss_pred HHHHHHHHHhh-------cc----CC---CChhhHHHHHHHHHHHh-----CCCcEEEEEeccCCCCccChhhhHhhhcC
Q 043083 225 IRVAKAIIEGL-------DE----SA---SSLSEFQSLMSHIHRSI-----EGKKFFLVLDDVWDGDYNKWEPFFLYLKN 285 (468)
Q Consensus 225 ~~~~~~i~~~l-------~~----~~---~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 285 (468)
...+.+...- .. .. .....++++. .+.+.+ .+.+.++|+|+++..+....+.|...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0111111000 00 00 0111233322 233333 35667999999998888888888888876
Q ss_pred CCCCcEEEEecCChh-HHh-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 286 GLHGSKILVTTRNES-VAH-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 286 ~~~gs~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
-..++.+|++|.+.. +.. ..+....+.+.+++.++..+++...... . .......+++.++|.|+....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~--~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------L--PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------C--CHHHHHHHHHHcCCCHHHHHHHh
Confidence 655666777776653 322 2223568999999999999999875311 1 11222578999999998665543
No 47
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=8.6e-07 Score=91.01 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=113.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH-H
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA-I 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i 231 (468)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... +..++.+.....+... .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccHHHHHHhccCc
Confidence 468999999999999886432 356789999999999999998876311111000 0001110000000000 0
Q ss_pred HHhhccC---CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhh
Q 043083 232 IEGLDES---ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMM 305 (468)
Q Consensus 232 ~~~l~~~---~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~ 305 (468)
..-+... .....++.++....... ..+++-++|||+++..+....+.|+..+......+++|++|.+. .+. ...
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 0000000 01111222222221111 23566799999998766556777788886555566777776543 221 112
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+....+.+.+++.++....+.+.+-..+. .-.......|++.++|.+.-+..+.
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 22346788899999999999887643221 1224567889999999986655443
No 48
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.61 E-value=1.2e-06 Score=80.01 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=92.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
....+.|+|+.|+|||+||+.+++... .... ...+++...... . + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H------------------hhc-c
Confidence 345789999999999999999987421 1222 244554433110 0 0 011 2
Q ss_pred CcEEEEEeccCCCCccChhhhHhhhcCC-CCCc-EEEEecCChhHHh--------hhCCCCeeeCCCCChHHHHHHHHHh
Q 043083 259 KKFFLVLDDVWDGDYNKWEPFFLYLKNG-LHGS-KILVTTRNESVAH--------MMGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
..-+||+||++..+...-..+...+... ..+. .+|+|++...... .+.....+++++++.++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3347899999764433333455555321 2233 4777776543221 2222468899999999877777765
Q ss_pred hcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhc
Q 043083 329 AFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLR 367 (468)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 367 (468)
+...+ ..-.++....+++.+.|++..+..+...|.
T Consensus 170 ~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERG----LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 42211 222346778899999999999888776653
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=3.9e-07 Score=90.01 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=116.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+.-+..|..++.... -...+.++|+.|+||||+|+.+++...-. .... ...+..+.+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 468998888888888885432 23568999999999999999998732111 1000 001111111111111110
Q ss_pred Hh---hcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHHh-hh
Q 043083 233 EG---LDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVAH-MM 305 (468)
Q Consensus 233 ~~---l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~ 305 (468)
.. +.. ......+..++.+.+... ..++.-++|+|+++..+...++.|+..+........+|++|.. ..+.. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 000 011122333343333322 2456679999999988777888888888654455555555544 43322 22
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+....+.+.+++.++..+.+.+.+...+ ..-..+....|++.++|.+.-+..+-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Eg----i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIEN----VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 2245789999999999998888764322 11234567889999999986554443
No 50
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.61 E-value=1.1e-07 Score=86.97 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=63.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC--cCHHHHHHHHHHhhccCCCChhh------HHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT--FEEIRVAKAIIEGLDESASSLSE------FQSLMS 250 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~------~~~l~~ 250 (468)
....+.|+|++|+|||||++.++++.... +|+.++|+.+... ++..+++..+...+-....+... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999965444 8999999997766 78999999984333222111111 112223
Q ss_pred HHHHH-hCCCcEEEEEeccCC
Q 043083 251 HIHRS-IEGKKFFLVLDDVWD 270 (468)
Q Consensus 251 ~l~~~-l~~k~~LlVlDdv~~ 270 (468)
....+ -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 33322 258999999999954
No 51
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.60 E-value=2.1e-06 Score=75.96 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
+.+-++|+|+++..+....+.|...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 566789999998776666778888887665666677776653 222211 22468999999999999888876 1
Q ss_pred CCccchHHHHHHHHHHcCCchH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPV 357 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Pl 357 (468)
. ..+.+..|++.++|.|.
T Consensus 169 i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred C----CHHHHHHHHHHcCCCcc
Confidence 1 13567899999999885
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=6.9e-07 Score=82.97 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=98.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
+...-+.+||++|+||||||+.+.+..+... ..+|..|....-..-.+.|+++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 3567788999999999999999987433222 5577777654444444444443211 12246
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE--ecCChhH---HhhhCCCCeeeCCCCChHHHHHHHHHhhc--
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV--TTRNESV---AHMMGSTNIIFIEQLAEEECCSLLERLAF-- 330 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~-- 330 (468)
++|.+|.+|.++..+..+-+. +||.-.+|.-++| ||.++.. +..++...++.|++|+.++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999998766544333 4555556776665 6666543 22334457889999999999999887321
Q ss_pred -CCCCC---CCcc---chHHHHHHHHHHcCCchH
Q 043083 331 -FGRSF---EDRE---KLEPMGRKIAHKCKGLPV 357 (468)
Q Consensus 331 -~~~~~---~~~~---~~~~~~~~I~~~~~G~Pl 357 (468)
..... .+.+ -...+..-++..|.|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11111 1111 123455667778888543
No 53
>PRK09087 hypothetical protein; Validated
Probab=98.59 E-value=9.9e-07 Score=79.99 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
.+.+.|+|++|+|||+|++.++... ...+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc-
Confidence 3568999999999999999888632 12244321 111111111 111
Q ss_pred cEEEEEeccCCCCccChhhhHhhhcC-CCCCcEEEEecCC---------hhHHhhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 260 KFFLVLDDVWDGDYNKWEPFFLYLKN-GLHGSKILVTTRN---------ESVAHMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
-+|++||+.... ..-+.+...+.. ...|..+|+|++. +.+...+.....+++++++.++-.+++++.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889996532 111234443331 1236679998874 2333444556789999999999999999887
Q ss_pred cCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 330 FFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.... ..-.+++..-|++.+.|..-.+..+-..|
T Consensus 167 ~~~~----~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQ----LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcC----CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4321 22335677889999999888777544443
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.4e-06 Score=85.38 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=114.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh------------------c-ccccCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE------------------V-KRNFENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~------------------~-~~~F~~~ 213 (468)
.+++|-+..++.|.+.+.... -...+.++|+.|+||||+|+.+..... + ...+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468998888887777775322 345789999999999999988875210 0 0111123
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+.++.+...... +..++.+..... ..++.-++|+|+++..+...++.|...+..-.+.+++
T Consensus 88 ~eidaas~~~vd------------------dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVD------------------DIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHH------------------HHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 333333222222 222222222111 1356668999999887766788888888776667776
Q ss_pred EEecCC-hhHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 293 LVTTRN-ESVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 293 lvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
|++|.. ..+... .+....+++.+++.++....+...+...+. .-..+....|++.++|.+..+...
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666643 344322 233567899999999999999887643221 122455678999999988655443
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2e-06 Score=86.33 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=109.3
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc-------------------cCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN-------------------FENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 213 (468)
.+++|.+.....|...+.... -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468998877777777665322 3456899999999999999988763211100 0011
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+.++.+.... ..+...+.+..... ..+++-++|+|+++.......+.|...+......+.+
T Consensus 89 ~el~aa~~~g------------------id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRG------------------IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCC------------------HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 2222211111 11122222222111 2356679999999776555566677777654445555
Q ss_pred EEecCC-hhHHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHHHHHh
Q 043083 293 LVTTRN-ESVAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVIGNLL 366 (468)
Q Consensus 293 lvTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~~~L 366 (468)
|++|.+ ..+...+ .....+++.+++.++....+...+...+. .-..+....|++.++| .+.++..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 544443 3333222 23567899999999999998887643221 1224566788887765 567777766544
No 56
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.7e-06 Score=88.95 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=112.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc--cCceEEEEeCCCcCHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN--FENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.+++|-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-... ....-.-.++.+.+...+...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 468998877888888876432 3567789999999999999988652111000 000000011111111111000
Q ss_pred H---HHhhccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHH-h
Q 043083 231 I---IEGLDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVA-H 303 (468)
Q Consensus 231 i---~~~l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~ 303 (468)
- +..+... .....+..++.+.+... ..++.-++|||+++..+...++.|...+..-...+++|++|.+ ..+. .
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0 0000000 01111222222221111 1344558999999988877888888888765556666665543 3332 2
Q ss_pred hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 304 MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 304 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
..+....+++.+++.++....+.+.+...+. .-..+....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2333568999999999999998876643221 112355678999999988666554
No 57
>PF14516 AAA_35: AAA-like domain
Probab=98.57 E-value=6.1e-06 Score=79.52 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=119.6
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-----cCHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-----FEEIR 226 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 226 (468)
.+..|.|...-+++.+.|..+ ...+.|.|+..+|||+|...+.+..+. ..+. ++++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHH
Confidence 344567876677778777542 348999999999999999888874332 2333 557776541 24555
Q ss_pred HHHHHHHhhccCCCC-----------hhhHHHHHHHHHHHh---CCCcEEEEEeccCCCCc--cChhhhHhhhc----CC
Q 043083 227 VAKAIIEGLDESASS-----------LSEFQSLMSHIHRSI---EGKKFFLVLDDVWDGDY--NKWEPFFLYLK----NG 286 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~-----------~~~~~~l~~~l~~~l---~~k~~LlVlDdv~~~~~--~~~~~l~~~l~----~~ 286 (468)
+++.++..+...-.- ..........+.+++ .+++.+|+||+++.--. ....++...+. ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 666665554432110 111223333444432 26899999999965321 11123333332 11
Q ss_pred C----CCc-EEEEecCCh-hH-Hh----hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 287 L----HGS-KILVTTRNE-SV-AH----MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 287 ~----~gs-~ilvTtR~~-~v-~~----~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
. ... ++++....+ .. .. .++....+.|++++.+|...|+..+-.. .-....+.|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHHCCC
Confidence 1 111 222222111 11 11 1222457899999999999999876421 1122378999999999
Q ss_pred hHHHHHHHHHhcCCC
Q 043083 356 PVAAKVIGNLLRSKR 370 (468)
Q Consensus 356 Plai~~~~~~L~~~~ 370 (468)
|..+..++..+....
T Consensus 233 P~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 233 PYLVQKACYLLVEEQ 247 (331)
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999997753
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.4e-06 Score=88.37 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=113.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-------------------ccCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-------------------NFENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 213 (468)
.+++|-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. .|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999986432 345678999999999999988876321111 11112
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+.+..+.... ..+..++.+.+... ..++.-++|+|+++..+...++.|...+......+++
T Consensus 91 ~eidaas~~~------------------v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTK------------------VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCC------------------HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2222211111 12222222222111 1356668999999887777788888888776667777
Q ss_pred EEecCCh-hHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 293 LVTTRNE-SVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 293 lvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
|++|.+. .+. ...+....+++.+++.++....+.+.+-..+. .-.......|++.++|.+.-+..+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 7665443 222 11222456889999999988877766532221 1123456789999999886655443
No 59
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.56 E-value=3.2e-06 Score=78.12 Aligned_cols=199 Identities=18% Similarity=0.137 Sum_probs=120.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc----cCceEEEEeCCCcCHHHHHHHHHHhhc
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIWVCVSDTFEEIRVAKAIIEGLD 236 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (468)
-+++|.+.|..+. ....+.+.|||.+|+|||++++.+.+....... --.++.|.....++...+...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3455555555443 356678999999999999999999864221111 114778888899999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHhCC-CcEEEEEeccCCCCcc---ChhhhHhhh---cCCCCCcEEEEecCChhHHh-----h
Q 043083 237 ESASSLSEFQSLMSHIHRSIEG-KKFFLVLDDVWDGDYN---KWEPFFLYL---KNGLHGSKILVTTRNESVAH-----M 304 (468)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~~~~~~---~~~~l~~~l---~~~~~gs~ilvTtR~~~v~~-----~ 304 (468)
.......+...+.......++. +--+||+|++++.-.. .-..+.+.| .+.-.=+-|.+-|+..--+- .
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8766555555655555566643 4558999999763111 122233333 23333344555555432221 1
Q ss_pred hCCCCeeeCCCCChHH-HHHHHHHhhcCCC-CCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 305 MGSTNIIFIEQLAEEE-CCSLLERLAFFGR-SFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 305 ~~~~~~~~l~~L~~~e-~~~Lf~~~a~~~~-~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.+-...+.++....++ ...|+......-. .....-...++++.|+..++|+.--+..+
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 1124567777777655 4445443321111 11222345678999999999986555443
No 60
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=2.7e-06 Score=77.72 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=96.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 357899999999999999998873 222223467776432 2111 011 22222222
Q ss_pred cEEEEEeccCCCC-ccChhh-hHhhhcC-CCCCcEEEEecCChhH---------HhhhCCCCeeeCCCCChHHHHHHHHH
Q 043083 260 KFFLVLDDVWDGD-YNKWEP-FFLYLKN-GLHGSKILVTTRNESV---------AHMMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 260 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
=+||+||+.... ...|.. +...+.. ...|..+|+||+...- ...+.....+++.+++.++-..+++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 268899996432 234443 4444432 2336678998876432 12233346789999999999999996
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 328 LAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
++.... ..-.+++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~----~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG----LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654321 12235778889999999877776655544
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.9e-06 Score=86.25 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=112.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+..++.+..++.... ..+.+.++|+.|+||||+|+.+.+...-.. |.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999988885432 346788999999999999998876311101 11100 000001111111
Q ss_pred Hhh-------ccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHH
Q 043083 233 EGL-------DES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVA 302 (468)
Q Consensus 233 ~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 302 (468)
... ... .....+...+...+... ..+++-++|+|+++..+...++.|...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100 000 01112222222222211 1234457999999887666788888888765556666655543 3332
Q ss_pred h-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 043083 303 H-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGN 364 (468)
Q Consensus 303 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 364 (468)
. ..+....+++.+++.++....+...+...+. .-..+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 2223457899999999999888876632221 1124557789999999765 4444443
No 62
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.53 E-value=2.7e-06 Score=76.80 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=98.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccccc-C-ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNF-E-NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
....+.|+|..|+|||.|.+.+++. ..... . .++++ +..++...+...+... . ...+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~-----~----~~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIREFADALRDG-----E----IEEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHHHHHHHHTT-----S----HHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHHHHHHHHcc-----c----chhhhhhh
Confidence 3445789999999999999999984 33322 2 35566 4455555555555431 1 12233334
Q ss_pred CCCcEEEEEeccCCCCcc-Chhh-hHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHH
Q 043083 257 EGKKFFLVLDDVWDGDYN-KWEP-FFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSL 324 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 324 (468)
+ .-=+|+|||++.-... .|.. +...+.. ...|.+||+|+.... +...+...-.+++.+++.++...+
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 3447899999764322 2332 3333321 123668999996532 223344566899999999999999
Q ss_pred HHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHH
Q 043083 325 LERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNL 365 (468)
Q Consensus 325 f~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 365 (468)
+++.+...+ ..-.++++.-|++.+.+..-.+..+-..
T Consensus 175 l~~~a~~~~----~~l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 175 LQKKAKERG----IELPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999875322 2234577888999998877776655443
No 63
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.7e-06 Score=83.27 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=108.7
Q ss_pred ceeeccchHHHHHHHhhcCCCC----CCCCeEEEEEeecCCcchhHHHHHHhcChhccc------------------ccC
Q 043083 154 EVCGRVDEKNELLSKLLCESSE----QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR------------------NFE 211 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~----~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------------------~F~ 211 (468)
+++|-+.-++.|..++...... ...-..-+.++|++|+|||++|..+.+...-.. .++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5789888888888888654310 011356688999999999999988765211000 011
Q ss_pred ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCc
Q 043083 212 NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGS 290 (468)
Q Consensus 212 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 290 (468)
-+.++.... ......++.++.+.+... ..+++-++++|+++..+....+.|...+.....++
T Consensus 86 D~~~i~~~~-----------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~ 148 (394)
T PRK07940 86 DVRVVAPEG-----------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRT 148 (394)
T ss_pred CEEEecccc-----------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC
Confidence 111111100 001111222222222211 13556688999998887767777888777655566
Q ss_pred EEEEecCCh-hHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 291 KILVTTRNE-SVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 291 ~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.+|++|.+. .+... .+....+.+.+++.++....+..... . ..+.+..+++.++|.|.....+
T Consensus 149 ~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 666666553 33322 22346889999999999888874321 1 1345678899999999755433
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.2e-06 Score=87.51 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=109.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-------------------ccCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-------------------NFENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 213 (468)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+.....-.. .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899988888888886432 345678999999999999998876321110 11112
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH-HhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHR-SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+++..+... ...+..++...... -..+++-++|+|+++..+....+.|...+......+.+
T Consensus 91 ~ei~~~~~~------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNT------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccC------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 222211111 11122222222111 11356679999999887766777888888775556666
Q ss_pred EEecCCh-hHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 293 LVTTRNE-SVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 293 lvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
|++|.+. .+. ...+....+++.+++.++....+.+.+...+ ..........|++.++|.+--+..
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg----i~~~~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN----IPFDATALQLLARAAAGSMRDALS 219 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6666443 222 1111135788999999999988877653222 112234567899999998764433
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=3.3e-06 Score=89.91 Aligned_cols=196 Identities=13% Similarity=0.074 Sum_probs=113.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH--
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA-- 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-- 230 (468)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....... .++.+.+...+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHHHHHHHcCCC
Confidence 368998888888888886432 34568899999999999999887642111111000 00111000000000
Q ss_pred ----HHHhhcc-CCCChhhHHHHHHHHHH-HhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHHh
Q 043083 231 ----IIEGLDE-SASSLSEFQSLMSHIHR-SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVAH 303 (468)
Q Consensus 231 ----i~~~l~~-~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~ 303 (468)
++ .+.. ......++.++.+.+.. -..++.-++|||+++..+...++.|+..|..-...+.+|++|.+ ..+..
T Consensus 87 ~~~dv~-eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVT-EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEE-EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 0000 00112222233222211 12455668999999988888888899999876667766665544 33432
Q ss_pred h-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 304 M-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 304 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
. .+....|++..++.++...++.+.+-..+ ..-.......|++.++|.+..+..
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG----v~id~eal~lLa~~sgGdlR~Al~ 220 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEG----VPVEPGVLPLVIRAGGGSVRDSLS 220 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 23356789999999999888877653221 111234567899999998854443
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=2.7e-06 Score=85.19 Aligned_cols=171 Identities=18% Similarity=0.151 Sum_probs=104.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|..|+|||+|++.+.+.......-..++++ +..++...+...+.... .....+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 3468999999999999999998832211111224455 34456666666654311 11223333333 3
Q ss_pred cEEEEEeccCCCCcc-Ch-hhhHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHHHH
Q 043083 260 KFFLVLDDVWDGDYN-KW-EPFFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
.-+|||||+...... .+ +.+...+.. ...|..||+||.... +...+...-.+.+.+++.++..+++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 448899999654321 12 334444432 123456888876532 222334456788999999999999999
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 328 LAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.+-..+. ...-.+++..-|++.++|.|-.+.-+...|
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743221 112346788899999999999887665443
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.2e-06 Score=86.14 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=116.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC--ceEEEEeCCCcCHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE--NVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 230 (468)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+......... ...+-.++.+. ....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~----~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE----HCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH----HHHH
Confidence 468999999999999886432 355788999999999999998887321111100 00000111111 1111
Q ss_pred HHHhhcc--------CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-CChh
Q 043083 231 IIEGLDE--------SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-RNES 300 (468)
Q Consensus 231 i~~~l~~--------~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 300 (468)
|...... ......++.++.+.+... ..+++-++|+|+++..+....+.|...+..-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111100 011122333333332211 13455689999998877667788888887666677766655 3333
Q ss_pred HHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 301 VAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 301 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+...+ +....+++.+++.++....+.+.+...+. .--.+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32222 22467899999999999999887643221 1123566789999999987665544
No 68
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.3e-06 Score=84.63 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=111.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEE-----EeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWV-----CVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 227 (468)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|..+.+...-...++...|. .++.+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~---- 86 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES---- 86 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH----
Confidence 468898888888888775322 34558899999999999998887632111111100010 1111111
Q ss_pred HHHHHHh-------hcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-C
Q 043083 228 AKAIIEG-------LDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-R 297 (468)
Q Consensus 228 ~~~i~~~-------l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 297 (468)
...+... +.. ......++.++.+.+... ..+++-++|+|+++..+...++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111110 000 001112222222222111 23556689999998776667888888887766677666655 4
Q ss_pred ChhHHhhhC-CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 298 NESVAHMMG-STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 298 ~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
...+...+. ....+++.+++.++....+...+-..+ ..-..+.+..|++.++|.+--+..
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 333332211 134688999999999888887653221 112346678899999998865544
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.46 E-value=2.6e-06 Score=83.55 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=99.8
Q ss_pred CCceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEE 224 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 224 (468)
..++.|+++.++++.+.+..+-.. +-..++-+.|+|++|+|||+||+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 346899999999998877432210 0123456899999999999999999983 33333 22211
Q ss_pred HHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC-----------ccChhhhHhhh---cC--CCC
Q 043083 225 IRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD-----------YNKWEPFFLYL---KN--GLH 288 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~~ 288 (468)
..+.... ++ .....+...+...-...+.+|+||+++... ......+...+ .. ...
T Consensus 190 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 1111110 00 011111122222223567899999986521 00111222222 21 134
Q ss_pred CcEEEEecCChhHH-----hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 289 GSKILVTTRNESVA-----HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 289 gs~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
+..||.||...... ........+.++..+.++..++|+.++..... ..... ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 66788888764322 11112457889999999999999987643221 11112 356778887764
No 70
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.5e-06 Score=86.02 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+......... -....+.-.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468998888888888885432 345678999999999999998886321100000 000011112222222
Q ss_pred HhhccC--------CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHH
Q 043083 233 EGLDES--------ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVA 302 (468)
Q Consensus 233 ~~l~~~--------~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 302 (468)
...... .....+..++.+.+... ..+++-++|+|+++..+....+.|...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 01112223333222211 1355678999999877666677788888765556666666644 3332
Q ss_pred hh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 303 HM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 303 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
.. .+....+.+..++.++....+...+...+. .-..+.+..|++.++|.+..+.....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 222457889999999998888877643221 11245677899999999876655443
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.1e-05 Score=82.60 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=115.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+ +-.++.+.+ ...|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~----C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCES----CVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHH----HHHhh
Confidence 468999988899988886432 345678999999999999998886321111000 001111100 11110
Q ss_pred Hh---------hcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-CChh
Q 043083 233 EG---------LDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-RNES 300 (468)
Q Consensus 233 ~~---------l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 300 (468)
.. +.. ......+..++.+.+... ..+++-++|+|+++..+....+.|+..+..-...+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 011122333333333221 13556689999998887778888888888766566655555 4444
Q ss_pred HHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHHHh
Q 043083 301 VAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGNLL 366 (468)
Q Consensus 301 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~~L 366 (468)
+... .+....+++.+++.++..+.+...+...+. .-.......|++.++|.+- ++..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 233567999999999998888876543221 1123456778999999775 444444433
No 72
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.42 E-value=7e-07 Score=85.39 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=66.4
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHHHhhccCCCC
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAIIEGLDESASS 241 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 241 (468)
++++.+..- +.-....|+|++|+|||||++.++++.... +|+.++||.+.+.. ++.+++..+...+-....+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555422 234568899999999999999999964444 89999999998877 7778888876322222211
Q ss_pred hhhH------HHHHHHHHHH-hCCCcEEEEEeccCC
Q 043083 242 LSEF------QSLMSHIHRS-IEGKKFFLVLDDVWD 270 (468)
Q Consensus 242 ~~~~------~~l~~~l~~~-l~~k~~LlVlDdv~~ 270 (468)
.... ....+.-..+ -.++++||++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 1122222222 268999999999954
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.1e-05 Score=79.23 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=106.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc------ccccCc-eEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV------KRNFEN-VIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~-~~wv~~~~~~~~~ 225 (468)
.+++|.+...+.+...+... .-.+.+.++|++|+|||++|+.+.+.... ...|.. ++-+.......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-- 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS-- 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC--
Confidence 46789999999998888542 23568889999999999999988763211 011221 11111111111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHH-HhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecC-ChhHHh
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHR-SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTR-NESVAH 303 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~ 303 (468)
..+...+...+.. -..+++-++++|+++......++.+...+......+.+|++|. ...+..
T Consensus 90 ----------------~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 90 ----------------VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ----------------HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1111122221111 1124556899999976555556777776755444555555553 333222
Q ss_pred h-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 304 M-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 304 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
. .+....++..+++.++....+...+...+. .-..+.+..|++.++|.+-.+..
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHHHH
Confidence 1 222457899999999999888877643221 11246677889999997664443
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.40 E-value=5.1e-06 Score=89.48 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=86.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc---c-ccCceEE-EEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK---R-NFENVIW-VCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~w-v~~~~~~~~~~~ 227 (468)
..++||+.++.+++..|.... ..-+.++|++|+||||+|+.+++..... . -....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999996543 2345699999999999999888731111 1 1122232 32221
Q ss_pred HHHHHHhhccCCCChhhH-HHHHHHHHHHh-CCCcEEEEEeccCCCCc-----cChh---hhHhhhcCCCCCcEEEEecC
Q 043083 228 AKAIIEGLDESASSLSEF-QSLMSHIHRSI-EGKKFFLVLDDVWDGDY-----NKWE---PFFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~-~~l~~~l~~~l-~~k~~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~gs~ilvTtR 297 (468)
+........+. +.+...+...- .+++.+|++|+++.... ..-+ .|...+..+ .-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 00000001111 12222222221 25789999999976321 1111 233333332 346676766
Q ss_pred ChhHHh-------hhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 298 NESVAH-------MMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 298 ~~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
...... .......+.+++++.++...+++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 543311 11224689999999999999976543
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.2e-05 Score=82.22 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=113.3
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-....... .+..+ .....|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHh
Confidence 36789777777777777532 234678899999999999999888742111100000 00000 0111111
Q ss_pred Hhh-------cc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHH
Q 043083 233 EGL-------DE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVA 302 (468)
Q Consensus 233 ~~l-------~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 302 (468)
... .. ......+...+.+.+... ..+++-++|+|+++..+...++.|...+..-.....+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100 00 001112222222222211 2456679999999887766777888887654445556665554 3333
Q ss_pred hh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch-HHHHHHHHHh
Q 043083 303 HM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP-VAAKVIGNLL 366 (468)
Q Consensus 303 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~L 366 (468)
.. .+....+++.+++.++....+...+...+. .-..+.+..|++.++|.+ .++..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 222457889999999999888876643221 122456778999999965 6777766554
No 76
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.7e-05 Score=78.62 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=110.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc---cc----------------ccCce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV---KR----------------NFENV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~----------------~F~~~ 213 (468)
.+++|-+.-...|..++.... -...+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368899988888888885432 3456778999999999999887763110 00 01111
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+++..+.. ....+...+.+.+... ..+++-++|+|+++......++.|...+........+
T Consensus 91 ~eidaas~------------------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASN------------------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccC------------------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 12211111 1112222333222221 1356679999999876656677777777765555555
Q ss_pred EEec-CChhHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 293 LVTT-RNESVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 293 lvTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
|++| +...+... ......+.+.+++.++....+...+-..+. .-..+.+..|+..++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 43333221 222457899999999999888876643221 1223556788999999876555444
No 77
>PRK06620 hypothetical protein; Validated
Probab=98.34 E-value=1.7e-05 Score=71.29 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=85.3
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
+.+.|+|++|+|||+|++.+++... ..++. ..+.. + ... ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5789999999999999998877421 12221 00000 0 011 123
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH-------HhhhCCCCeeeCCCCChHHHHHHHHHhhcCCC
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV-------AHMMGSTNIIFIEQLAEEECCSLLERLAFFGR 333 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~ 333 (468)
-+|++||++.........+...+. ..|..||+|++.... ...+.....+++++++.++...++++.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 578899996321111222222222 346689999985432 23334456899999999999888888764211
Q ss_pred CCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 334 SFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 334 ~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
..-.+++..-|++.+.|.--.+.-+-..|
T Consensus 165 ----l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 165 ----VTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred ----CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 12335778889999988766665544433
No 78
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=5.6e-07 Score=85.53 Aligned_cols=227 Identities=21% Similarity=0.238 Sum_probs=147.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
..+.+.++|.|||||||++-.+.. +...|.. +.++....-.+...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 467899999999999999987775 5566755 555555554455555555555455432221 123344556667
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhhhCCCCeeeCCCCChH-HHHHHHHHhhcCCC-CC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMGSTNIIFIEQLAEE-ECCSLLERLAFFGR-SF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a~~~~-~~ 335 (468)
+++.++|+||...-- ..-..+...+-.+...-.|+.|+|...... ......+++|+.. ++.++|...+.... +.
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999983311 111122333334444557889998765432 2445567777765 68888876653222 22
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC--------ccccccc--------ccCCCchhhHhhccccCCChhh
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR--------SEMWKVQ--------EIGQGLLTPLLLSYNDLPSNSM 399 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~--------~~~w~~~--------~~~~~~~~~l~~sy~~L~~~~~ 399 (468)
.-.........+|.++..|.|++|...++..++-. .+.|... ...+.....+.+||.-|.. .
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg--w 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG--W 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh--H
Confidence 22334556788999999999999999998887754 2333321 1223456789999999988 7
Q ss_pred hhHHHhhhcCCCCCCccC
Q 043083 400 VKRCFSYCTVFPKDCNMD 417 (468)
Q Consensus 400 ~k~cf~~ls~fp~~~~i~ 417 (468)
.+--|--++.|...|...
T Consensus 241 e~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHHhcchhhhhhhhccc
Confidence 888999999998876544
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.32 E-value=8.6e-06 Score=78.41 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=86.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+...+.+..++... ..+.++.++|++|+|||++|+.+++. ... ....++.+. .... ..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHH-HHHHHH
Confidence 46899999999999888632 24567888999999999999999873 221 133444443 1111 111111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHH-h-hhCCCC
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVA-H-MMGSTN 309 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~~~~~~ 309 (468)
.... ... .+.+.+-++|+||++.. .......+...+.....++++|+||...... . ..+...
T Consensus 89 ~~~~-------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFA-------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHH-------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1100 000 01234568999999765 2222334555565555677889888754311 1 112234
Q ss_pred eeeCCCCChHHHHHHHHH
Q 043083 310 IIFIEQLAEEECCSLLER 327 (468)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~~ 327 (468)
.+.++..+.++...++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777888887766553
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=2.2e-05 Score=75.71 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=114.3
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.+..++||+.|++.+..++...-. ....+-+-|.|.+|.|||.+...++.+..-...-..++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 446789999999999999876553 234667889999999999999989875322222234577777766678888888
Q ss_pred HHHhhccCCCChhhHHHHHHHHHHHhCCC--cEEEEEeccCCCCccChhhhHhhhc-CCCCCcEEEEecCChhH--H---
Q 043083 231 IIEGLDESASSLSEFQSLMSHIHRSIEGK--KFFLVLDDVWDGDYNKWEPFFLYLK-NGLHGSKILVTTRNESV--A--- 302 (468)
Q Consensus 231 i~~~l~~~~~~~~~~~~l~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v--~--- 302 (468)
|...+...........+.+..+..+..+. .+|+|+|..+.-....-..|...|. ..-+++++|+.--...+ .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88887322222222255666666666443 5899999986532222222333332 12345555554322211 1
Q ss_pred --hh----hCCCCeeeCCCCChHHHHHHHHHhhc
Q 043083 303 --HM----MGSTNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 303 --~~----~~~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
.. -.....+..+|.+.++..++|..+.-
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 10 12256788899999999999998874
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=5.5e-06 Score=86.01 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=111.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc-c---CceEEE-EeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN-F---ENVIWV-CVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-F---~~~~wv-~~~~~~~~~~~ 227 (468)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.++...--... . +|.... +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 468898888888888886432 3566789999999999999988763111000 0 000000 000000000
Q ss_pred HHHHHHhhcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-CChhHHh-
Q 043083 228 AKAIIEGLDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-RNESVAH- 303 (468)
Q Consensus 228 ~~~i~~~l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~- 303 (468)
.+.. ......+..++.+.+... ..+++-++|+|+++......+..|...+......+.+|++| ....+..
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 001122233333333322 23566799999998877677888888887655555555444 4444432
Q ss_pred hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 304 MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 304 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.......+++.+++.++....+...+...+. ....+.+..|++.++|.+.-+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233468999999999999888876532221 112345678999999977544443
No 82
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.29 E-value=2.3e-06 Score=82.34 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=63.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC--cCHHHHHHHHHHhhccCCCChhh------HHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT--FEEIRVAKAIIEGLDESASSLSE------FQSLMS 250 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~------~~~l~~ 250 (468)
.-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.++..+-....+... ...+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999985333 37999899998865 78999999985544332221111 112223
Q ss_pred HHHHH-hCCCcEEEEEeccCC
Q 043083 251 HIHRS-IEGKKFFLVLDDVWD 270 (468)
Q Consensus 251 ~l~~~-l~~k~~LlVlDdv~~ 270 (468)
..... -.+++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 33333 268999999999954
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=4e-05 Score=76.33 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=94.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhccccc--CceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNF--ENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+.|+|+.|+|||+|++.+++. ..... ..+++++. .++...+...+... ..+.. .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 346899999999999999999984 32322 23566643 33444444444321 12222 22232
Q ss_pred CCcEEEEEeccCCCCccCh--hhhHhhhcC-CCCCcEEEEecCChh-H--------HhhhCCCCeeeCCCCChHHHHHHH
Q 043083 258 GKKFFLVLDDVWDGDYNKW--EPFFLYLKN-GLHGSKILVTTRNES-V--------AHMMGSTNIIFIEQLAEEECCSLL 325 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~~-v--------~~~~~~~~~~~l~~L~~~e~~~Lf 325 (468)
+ .-+|+|||++......+ +.+...+.. ...+..+|+||.... . ...+.....+.+.+.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34899999975322211 223333321 123456888876521 1 112222457899999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 326 ERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
++.+.... ..-.+++...|++.+.|.+-.+.-+
T Consensus 278 ~~~~~~~~----~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEG----LELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 98875322 1223567788999999887755543
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=4.1e-05 Score=79.12 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=110.3
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEE-----EeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWV-----CVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 227 (468)
.+++|-+..+..|...+... .-...+.++|+.|+||||+|+.+.+...-...++...|. .++.+.+...+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899888888888877532 234568899999999999998887632111111000011 11111111111
Q ss_pred HHHH---HHhhcc-CCCChhhHHHHHHHHHH-HhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-CChhH
Q 043083 228 AKAI---IEGLDE-SASSLSEFQSLMSHIHR-SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-RNESV 301 (468)
Q Consensus 228 ~~~i---~~~l~~-~~~~~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 301 (468)
...- +..+.. ......++.++.+.+.. -..+++-++|+|+++..+....+.|...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000 000000 01112223333322221 123556689999998876667778888887765566655544 43444
Q ss_pred Hh-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 043083 302 AH-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAA 359 (468)
Q Consensus 302 ~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 359 (468)
.. .......+++.+++.++....+.+.+...+. .-..+.+..|++.++|..--+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHH
Confidence 32 2233568999999999988888776532211 112456778999999966533
No 85
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.27 E-value=2.2e-05 Score=71.02 Aligned_cols=182 Identities=21% Similarity=0.216 Sum_probs=108.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+|+|.++-++++.-.+..... .+..+-.+.++|++|.||||||.-+++. ....+. ++-+...+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----eccccccc---------
Confidence 4799988888777665544332 4567889999999999999999999984 322221 11111111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcC--------CCCCcE-----------EE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKN--------GLHGSK-----------IL 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------il 293 (468)
...++...|.. | .+.=+|.+|.++..+...-+.+..++.+ .++++| |=
T Consensus 90 -----------K~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 -----------KPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred -----------ChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 11122222222 2 2334567788876554333334333321 122333 44
Q ss_pred EecCChhHHhhhCC--CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhc
Q 043083 294 VTTRNESVAHMMGS--TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLR 367 (468)
Q Consensus 294 vTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 367 (468)
.|||.-.+...+.. .-+.+++-.+.+|-.++..+.+..-. ..-.++.+.+|+++..|.|.-..-+-+.++
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 58887655443322 34678899999999999988773221 222346678999999999986665555443
No 86
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.26 E-value=1.1e-05 Score=86.07 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=86.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh---ccccc-CceEEEEeCCCcCHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE---VKRNF-ENVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 228 (468)
..++||++++.+++..|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 368999999999999886543 23467999999999999998887421 11111 233332 1 111111
Q ss_pred HHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCCC---------ccChhhhHhhhcCCCCCcEEEEecCC
Q 043083 229 KAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDGD---------YNKWEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
.. .....+.++....+.+.+ ..++.+|++|+++.-. ...-+.|...+..+ .-++|-+|..
T Consensus 251 ----a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 ----AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ----hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 00 000112222222222222 3468899999997421 01122244444332 2345555554
Q ss_pred hhHHh-------hhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 299 ESVAH-------MMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 299 ~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.+... .......+.++.++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32211 11124578999999999999999654
No 87
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=4.8e-05 Score=79.02 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=112.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|.+.-...|..++.... -...+.++|+.|+||||+|+.+++...-. .......-.++ .-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~~~Cg----~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTPEPCG----KCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCCCCCc----ccHHHHHHh
Confidence 368898888888888886432 23567899999999999999888742111 11000000011 111122221
Q ss_pred Hhhcc-----C---CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH
Q 043083 233 EGLDE-----S---ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA 302 (468)
Q Consensus 233 ~~l~~-----~---~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 302 (468)
..... . ......+.++...+... ..+++-++|+|+++..+...++.|...+..-...+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 0 01112223333222111 13556689999998877667888888887655556555555443 332
Q ss_pred h-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 303 H-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 303 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
. ..+....+++..++.++....+...+...+. .-..+.+..|++.++|.+..+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 1222456888899999988887766532211 11235577899999998865554433
No 88
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.25 E-value=2e-05 Score=70.67 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCcCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHH
Q 043083 149 LIDEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 149 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 228 (468)
++.-..++|-+.+++.|++....--. +....-+.++|..|+|||+|++.+.+...-+. .--|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 34446799999999988765543321 22455678899999999999999887322111 11122222
Q ss_pred HHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC---CC-CcEEEEecCChh
Q 043083 229 KAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG---LH-GSKILVTTRNES 300 (468)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~-gs~ilvTtR~~~ 300 (468)
.+..++..+.+.|+. ...||+|.+||+.-. ....+..|++.|..+ .+ ...|..||..+.
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 222333444444432 457999999999543 234577788777643 22 334444554443
No 89
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.23 E-value=1.3e-05 Score=78.99 Aligned_cols=178 Identities=14% Similarity=0.099 Sum_probs=96.9
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
..+.|+++.++++.+.+..+-.. +-..++-|.++|++|+|||++|+.+++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 46889999999988876432110 1124567899999999999999999873 2222 222221 1
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC-----------ccChhhhHhhhc---C--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD-----------YNKWEPFFLYLK---N--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~---~--~~~g 289 (468)
.+... ..+ .....+...+...-...+.+|+|||++.-. ......+...+. . ...+
T Consensus 200 ~l~~~----~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ELVQK----FIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHhHh----hcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11111 000 011111112222223567899999996421 011112333332 1 1235
Q ss_pred cEEEEecCChhHHh-h-h---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 290 SKILVTTRNESVAH-M-M---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 290 s~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
..||.||....... . + .....+.+++.+.++-.++|+.+.....- ..... ...+++.+.|+
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 56777777643321 1 1 12457899999999999999987643221 11112 34577777764
No 90
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=7.8e-05 Score=75.44 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=112.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc--c----------------cC-ce
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR--N----------------FE-NV 213 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~----------------F~-~~ 213 (468)
.+++|-+.-.+.|...+... .-.....++|+.|+||||+|+.+.+..--.. . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899888888888888532 2355678999999999999987765311000 0 00 01
Q ss_pred EEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH----hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCC
Q 043083 214 IWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS----IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHG 289 (468)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 289 (468)
+.+..+.. ...+++.+.+... ..+++-++|+|+++..+....+.|+..+......
T Consensus 89 ~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 11111110 0122222222211 1245668999999888777788888888766667
Q ss_pred cEEEEecCCh-hHHh-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 290 SKILVTTRNE-SVAH-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 290 s~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
+++|++|.+. .+.. ..+....+++.+++.++....+.+.+...+. .-..+.+..|++.++|.+.-+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 7777776553 2211 1122467899999999999988876643221 1224567789999999986665543
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.22 E-value=4.9e-05 Score=76.72 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=95.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccC--ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFE--NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+.|+|++|+|||+|++.+++. ....++ .+++++.. .+...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 456899999999999999999984 333332 25566433 3334444443221 112 2223333
Q ss_pred CCcEEEEEeccCCCCccC-h-hhhHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHH
Q 043083 258 GKKFFLVLDDVWDGDYNK-W-EPFFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLL 325 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf 325 (468)
+.-+|+|||++...... + +.+...+.. ...|..||+||.... +...+.....+++.+.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999996532211 1 233333321 112445888876532 1223333467899999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 326 ERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
++.+.... ..-.+++...|++.+.|..-.+.-+
T Consensus 290 ~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 290 KKKAEEEG----IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 99874321 2223467788999888887755433
No 92
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.5e-05 Score=79.22 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=111.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc---------------------ccccC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV---------------------KRNFE 211 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~F~ 211 (468)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899988889999888543 23566889999999999999877663110 01122
Q ss_pred ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCc
Q 043083 212 NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGS 290 (468)
Q Consensus 212 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 290 (468)
+..+..+.... ..+...+...+... ..+++-++|+|+++..+...++.|...+..-..++
T Consensus 92 -~~~ld~~~~~~------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 -IHELDAASNNS------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred -eEEecccccCC------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 11111111111 11222222221111 13456688999998877777888888888766667
Q ss_pred EEEEec-CChhHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 291 KILVTT-RNESVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 291 ~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
.+|++| ....+... .+....+++.+++.++....+...+...+. ....+.+..|++.++|..--+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 665555 44444332 223567899999999999888876543221 11234567899999997764443
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=2.9e-05 Score=77.68 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccc-cC-ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRN-FE-NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+.|+|++|+|||+|++.+++. .... .. .++|++. .++...+...+... .... +.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345999999999999999999984 3332 22 3666643 44555665555321 1122 222333
Q ss_pred CCcEEEEEeccCCCC-ccCh-hhhHhhhcC-CCCCcEEEEecC-ChhHH--------hhhCCCCeeeCCCCChHHHHHHH
Q 043083 258 GKKFFLVLDDVWDGD-YNKW-EPFFLYLKN-GLHGSKILVTTR-NESVA--------HMMGSTNIIFIEQLAEEECCSLL 325 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v~--------~~~~~~~~~~l~~L~~~e~~~Lf 325 (468)
.+.-+|+|||++... ...+ ..+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 445689999996431 1111 223333321 122446888875 33211 12333457889999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 326 ERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
++.+.... ..-.+++...|++.+.|..-.+.
T Consensus 273 ~~~~~~~~----~~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEH----GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcC----CCCCHHHHHHHHhccccCHHHHH
Confidence 98874321 11235677788888887654444
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.22 E-value=1.5e-05 Score=86.21 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=86.1
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh---ccccc-CceEEEEeCCCcCHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE---VKRNF-ENVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 228 (468)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999997543 22457999999999999988877421 11111 234442 1 211111
Q ss_pred HHHHHhhccCCCChhhHHHH-HHHHHHHhCCCcEEEEEeccCCCC-------ccChh-hhHhhhcCCCCCcEEEEecCCh
Q 043083 229 KAIIEGLDESASSLSEFQSL-MSHIHRSIEGKKFFLVLDDVWDGD-------YNKWE-PFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~l-~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
.+.. ...+.++. ...+...-..++.+|++|+++.-. ..... .|...+..+ .-++|.+|...
T Consensus 248 -------ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -------ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 11122222 222222224568999999996311 01112 233333332 34566666655
Q ss_pred hHHhh-------hCCCCeeeCCCCChHHHHHHHHHh
Q 043083 300 SVAHM-------MGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 300 ~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
..... ......+.+...+.++...+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 122456788889999988887753
No 95
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=2.2e-05 Score=73.25 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=80.7
Q ss_pred ceeeccchHHHHH---HHhhc------CCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCH
Q 043083 154 EVCGRVDEKNELL---SKLLC------ESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEE 224 (468)
Q Consensus 154 ~~vGR~~e~~~l~---~~L~~------~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 224 (468)
.++|.+..++++. .++.. ..-...+....+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4677766665543 33311 1001123456788999999999999998876321111111112233222
Q ss_pred HHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc--------cChhhhHhhhcCCCCCcEEEEec
Q 043083 225 IRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY--------NKWEPFFLYLKNGLHGSKILVTT 296 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTt 296 (468)
.++... .-+ .....+...+... ...+|+||+++.-.. ...+.+...+........+++++
T Consensus 83 ~~l~~~----~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGE----YIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhh----hcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111111 000 0111122222221 234899999975221 12233444444443344566665
Q ss_pred CChhHHh------hh-CC-CCeeeCCCCChHHHHHHHHHhhc
Q 043083 297 RNESVAH------MM-GS-TNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 297 R~~~v~~------~~-~~-~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
....... .+ .. ...+++++++.++..+++++.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5433211 11 11 34688999999999999998764
No 96
>CHL00181 cbbX CbbX; Provisional
Probab=98.21 E-value=8.2e-05 Score=70.02 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=74.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.++|++|+|||++|+.+++.......-...-|+.++. ..+. ....+.. .......+... .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~----~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLV----GQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHH----HHHhccc-----hHHHHHHHHHc---c
Confidence 34588999999999999999976321111111112444442 1222 1111111 01111222222 2
Q ss_pred cEEEEEeccCCC---------CccChhhhHhhhcCCCCCcEEEEecCChhHHhhh--------CCCCeeeCCCCChHHHH
Q 043083 260 KFFLVLDDVWDG---------DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMM--------GSTNIIFIEQLAEEECC 322 (468)
Q Consensus 260 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~ 322 (468)
.-+|+||++... .......|...+.....+.+||+++......... .....+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999642 1112233455555555567787887654332111 12457899999999999
Q ss_pred HHHHHhhc
Q 043083 323 SLLERLAF 330 (468)
Q Consensus 323 ~Lf~~~a~ 330 (468)
+++...+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99988764
No 97
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=4.3e-05 Score=76.31 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=88.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|+.|+|||+|++.+++. .......+++++ ...+...+...+... . ...++..++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 356889999999999999999984 322223355664 234444554444321 1 122333333 3
Q ss_pred cEEEEEeccCCCCccCh--hhhHhhhcC-CCCCcEEEEecCCh-h--------HHhhhCCCCeeeCCCCChHHHHHHHHH
Q 043083 260 KFFLVLDDVWDGDYNKW--EPFFLYLKN-GLHGSKILVTTRNE-S--------VAHMMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
.-+|++||+.......+ +.+...+.. ...|..||+||... . +...+.....+.+.+++.++...++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999966432222 223333321 11355688888652 1 122233346889999999999999998
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 328 LAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
.+...+ ..-..++..-|+..+.|.
T Consensus 283 k~~~~~----~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS----IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCC
Confidence 774322 122345566677766654
No 98
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=5.7e-05 Score=71.11 Aligned_cols=205 Identities=17% Similarity=0.168 Sum_probs=119.9
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
.+.+.+|+.++..+...+..... .-+..|.|.|-+|.|||.+.+.+++.. .. ..+|+++-..++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 45789999999999988865432 346677999999999999999999853 22 26899999999999999999
Q ss_pred HHhhccC-CCC------hhhHHHHHHHHHHH--h--CCCcEEEEEeccCCCCccC---hhhhHhhhc-CCCCCcEEEEec
Q 043083 232 IEGLDES-ASS------LSEFQSLMSHIHRS--I--EGKKFFLVLDDVWDGDYNK---WEPFFLYLK-NGLHGSKILVTT 296 (468)
Q Consensus 232 ~~~l~~~-~~~------~~~~~~l~~~l~~~--l--~~k~~LlVlDdv~~~~~~~---~~~l~~~l~-~~~~gs~ilvTt 296 (468)
+.+.+.. .+. ..+.......+.++ . +++.++||||+++.-.... +..+...-. -..+...|++..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 9998522 211 12233333344432 2 2468999999995422111 111111101 112233333332
Q ss_pred CC-hhH-HhhhCC--CCeeeCCCCChHHHHHHHHHhhcCCCCCC-CccchHHHHHHHHHHcCCchHHHHHHHHH
Q 043083 297 RN-ESV-AHMMGS--TNIIFIEQLAEEECCSLLERLAFFGRSFE-DREKLEPMGRKIAHKCKGLPVAAKVIGNL 365 (468)
Q Consensus 297 R~-~~v-~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~-~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 365 (468)
-. +.. ...++. .-++..+.-+.++...++.+.-.+..... ...-+.-+..-....|+ -+-.+..++..
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 22 122 222344 44567889999999999876421111000 01111223344556666 55555555543
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=5.4e-05 Score=75.94 Aligned_cols=182 Identities=14% Similarity=0.172 Sum_probs=108.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc---------------------ccC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR---------------------NFE 211 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~F~ 211 (468)
.+++|.+..+..+..++.... -...+.++|+.|+||||+|+.+.+...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999988888888885422 346688999999999999988876311100 011
Q ss_pred ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCc
Q 043083 212 NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGS 290 (468)
Q Consensus 212 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 290 (468)
.+++..... ....+..++.+.+... ..+++-++|+|+++.......+.|...+......+
T Consensus 92 -~~~i~g~~~------------------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASH------------------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeecccc------------------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111000 0112222222222211 23567789999997765556667777877655566
Q ss_pred EEEEecCC-hhHHhh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 043083 291 KILVTTRN-ESVAHM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVI 362 (468)
Q Consensus 291 ~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 362 (468)
.+|++|.. ..+... ......+++.+++.++....+...+...+ ..-..+.+..|++.++|.+- ++..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg----~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG----IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666643 222221 22245789999999999888887653221 11234567789999999765 44443
No 100
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.20 E-value=5e-06 Score=81.36 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=77.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..+++.+...+.+...|.. .+.+.++|++|+|||++|+.+++.......|..+.||+++...+..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 3578888999999998863 3468889999999999999998854444567788899999888766665322
Q ss_pred HhhccCCCChhhH-HHHHHHHHHHh--CCCcEEEEEeccCCCCccC-hhhhHhhhc
Q 043083 233 EGLDESASSLSEF-QSLMSHIHRSI--EGKKFFLVLDDVWDGDYNK-WEPFFLYLK 284 (468)
Q Consensus 233 ~~l~~~~~~~~~~-~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 284 (468)
........-. .-+.+.+.... .+++++||+|++...+... +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1111010000 11112222222 2468999999997665433 555555554
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=5.8e-06 Score=68.30 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=55.2
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC-CcE
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG-KKF 261 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~-k~~ 261 (468)
|.|+|++|+|||++|+.+++. ...+ .+.++.+... ..........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELI---------------SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHH---------------TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccc---------------cccccccccccccccccccccccce
Confidence 579999999999999999984 2211 3444433211 001122223333334333233 489
Q ss_pred EEEEeccCCCCccC-----------hhhhHhhhcCCC---CCcEEEEecCCh
Q 043083 262 FLVLDDVWDGDYNK-----------WEPFFLYLKNGL---HGSKILVTTRNE 299 (468)
Q Consensus 262 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~ilvTtR~~ 299 (468)
+|+|||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999997644333 344555554332 245677777763
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=5e-05 Score=77.47 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=94.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhccccc--CceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNF--ENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
..+.|+|..|+|||.|++.+++. ....+ -.+++++. .++..++...+... .. ..+.+.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 34899999999999999999984 32222 23556643 34444444433221 11 122233332
Q ss_pred CcEEEEEeccCCCCcc-Chh-hhHhhhcC-CCCCcEEEEecCCh---------hHHhhhCCCCeeeCCCCChHHHHHHHH
Q 043083 259 KKFFLVLDDVWDGDYN-KWE-PFFLYLKN-GLHGSKILVTTRNE---------SVAHMMGSTNIIFIEQLAEEECCSLLE 326 (468)
Q Consensus 259 k~~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 326 (468)
-=+|+|||+...... .|. .|...+.. ...|..||+||+.. .+...+.....++|...+.+.-..+++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 347899999764322 222 23333331 12355688888763 223344556788999999999999999
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 043083 327 RLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKV 361 (468)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 361 (468)
+.+.... ..--.+++.-|++.+.+..-.+.-
T Consensus 457 kka~~r~----l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 457 KKAVQEQ----LNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHhcC----CCCCHHHHHHHHHhccCCHHHHHH
Confidence 8874322 122356777788887776554443
No 103
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=6.4e-05 Score=72.02 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=68.2
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH-H-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV-A-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
+++-++|+|+++..+....+.|...+..-..++.+|+||.+... . +..+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 44556678999998888888888888776667777777777533 2 22233567899999999999888765310
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
...+.+..++..++|.|+....+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233457789999999865544
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=7.3e-05 Score=77.36 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=110.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-....+. -.++.+ .....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 468999988888888885432 3456789999999999999888763111111000 000000 0000010
Q ss_pred Hh-------hcc-CCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecC-ChhHH
Q 043083 233 EG-------LDE-SASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTR-NESVA 302 (468)
Q Consensus 233 ~~-------l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~ 302 (468)
.. +.. ......+..++...+... ..++.-++|+|+++..+....+.|...+..-...+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 000 001122333333333211 134556899999988776778888888876655666665554 44443
Q ss_pred hh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 043083 303 HM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGN 364 (468)
Q Consensus 303 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 364 (468)
.. .+....+++.+++.++....+...+...+. .-..+....|++.++|..- ++..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 222457889999999988888765532211 1123556778889988664 4444433
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.00011 Score=75.43 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=114.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH-
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI- 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i- 231 (468)
.+++|-+.-+..|..++... .-...+.++|+.|+||||+|+.+++...-...... ..+..+.+...+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHHHHcCCC
Confidence 46899888888998888643 24567889999999999999988874211111000 0011111111110000
Q ss_pred H--HhhccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHHhh-h
Q 043083 232 I--EGLDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVAHM-M 305 (468)
Q Consensus 232 ~--~~l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~ 305 (468)
. ..+.+. .....+..++.+.+... ..+++-++|+|+++..+...++.|...+......+.+|++|.. ..+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 0 000000 01112222222222221 2456678999999887766778888888766566767666644 333222 2
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.....+++.+++.++....+...+...+ ..-..+.+..|++.++|.+..+..+
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~eg----i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQ----IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2245689999999999888887664322 1123456778999999988655443
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.14 E-value=4.1e-05 Score=72.10 Aligned_cols=133 Identities=12% Similarity=0.071 Sum_probs=72.9
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcE
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKF 261 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 261 (468)
-+.++|++|+|||++|+.++............-++.++. .++ +..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999977765321111111112444432 122 22221111 11122222222 336
Q ss_pred EEEEeccCCC---------CccChhhhHhhhcCCCCCcEEEEecCChhHHhhh--C------CCCeeeCCCCChHHHHHH
Q 043083 262 FLVLDDVWDG---------DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMM--G------STNIIFIEQLAEEECCSL 324 (468)
Q Consensus 262 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--~------~~~~~~l~~L~~~e~~~L 324 (468)
+|+||++... ....++.|...+.....+.+||+++......... . ....+++++++.++...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1112344556665555566777777654322111 1 135789999999999999
Q ss_pred HHHhhc
Q 043083 325 LERLAF 330 (468)
Q Consensus 325 f~~~a~ 330 (468)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00016 Score=74.53 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=110.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+...+.|.+++.... -...+.++|+.|+|||++|+.+.+...-...-+.. .++.+ .....|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~C----~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNEC----EICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCcc----HHHHHHh
Confidence 468999999999988886532 34567789999999999998887531110000000 00111 1111111
Q ss_pred Hhhc-------cC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEec-CChhHH
Q 043083 233 EGLD-------ES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTT-RNESVA 302 (468)
Q Consensus 233 ~~l~-------~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 302 (468)
.... .. .....+..++.+.+... ..++.-++|+|+++......++.|...+......+.+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1000 00 01112223333332211 24566789999998776667788888776655555555544 433332
Q ss_pred hh-hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 303 HM-MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 303 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.. .+....+...+++.++....+...+...+. .-..+.+..|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 222457889999999998888876632221 112355678889999887655433
No 108
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00026 Score=63.40 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=112.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeC-CCcCHHHHHHHHHHhhccCCCC--hhhHHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVS-DTFEEIRVAKAIIEGLDESASS--LSEFQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~ 255 (468)
+-+++.++|.-|+|||.+.+..... ..+ +.++=+.+. +..+...+...++..+...... ..-.++....+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 4569999999999999999944431 111 111113333 3456778888888888763221 12234444455554
Q ss_pred h-CCCc-EEEEEeccCCCCccChhhhHhhhcCCCCC---cEEEEecCChh-------HHhhhCC-CCe-eeCCCCChHHH
Q 043083 256 I-EGKK-FFLVLDDVWDGDYNKWEPFFLYLKNGLHG---SKILVTTRNES-------VAHMMGS-TNI-IFIEQLAEEEC 321 (468)
Q Consensus 256 l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~~~-------v~~~~~~-~~~-~~l~~L~~~e~ 321 (468)
. ++++ ..+++||.+.......+.++-.......+ -+|++.-..+- +...... ... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 4 5677 89999999876666666655544322222 23444443321 1111111 334 89999999999
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 322 CSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 322 ~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
..+++.+..+... ..+--..+....|.....|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999988765532 22223345677899999999999998764
No 109
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00018 Score=68.64 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=113.2
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc-------------ccccCceEEEEeCC
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV-------------KRNFENVIWVCVSD 220 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~~ 220 (468)
+++|.+..++.+...+.... -.....++|+.|+||+++|..+.+..-- ...++-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 57898888888888885432 3578999999999999999776653110 11222344443210
Q ss_pred CcCHHHHHHHHHHhhc--cCCCChhhHHHHHHHHHHHh-----CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEE
Q 043083 221 TFEEIRVAKAIIEGLD--ESASSLSEFQSLMSHIHRSI-----EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKIL 293 (468)
Q Consensus 221 ~~~~~~~~~~i~~~l~--~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 293 (468)
..+-..+-..-+...+ ........++++ ..+.+.+ .+++-++|+|+++..+....+.|...+..-. .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000000000011111 011111112222 2233333 3567799999998887777888888886555 44455
Q ss_pred EecCC-hhHHh-hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 294 VTTRN-ESVAH-MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 294 vTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
++|.+ ..+.. ..+....+.+.+++.++..+.+....... . .......++..++|.|..+..+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~--~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----I--LNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----c--chhHHHHHHHHcCCCHHHHHHHHH
Confidence 55444 33332 22335689999999999999998764211 0 111135789999999976655443
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.05 E-value=5.9e-05 Score=69.03 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=116.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceE-EEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVI-WVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i 231 (468)
.+++|-+..++-|.+.+.. ...+....+|++|.|||+-|..++...--.+.|++++ =.|+|..-... +.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vv--- 105 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VV--- 105 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-ch---
Confidence 4688988888888888865 3577899999999999999988877432345666543 23444321111 00
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHh--CCCc-EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhhh-C
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSI--EGKK-FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHMM-G 306 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~ 306 (468)
.....+...+........ .-++ -.+|||+++......|..+...+......++.++.+..- .+...+ +
T Consensus 106 -------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 106 -------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001111111111111111 0123 378999999999999999999998866677765555443 222211 1
Q ss_pred CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 307 STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
.-..+..++|..++...-++..+-..+. .-..+..+.|++.++|.-.-...+-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1345788999999988888877643322 2234566789999998544443333
No 111
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.01 E-value=6.7e-05 Score=79.50 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=86.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-c---cCceEEEEeCCCcCHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-N---FENVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~---F~~~~wv~~~~~~~~~~~~ 228 (468)
..++||++++.+++..|.... ..-+.++|++|+|||++|+.++....... . .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999997633 22346899999999999998886311111 1 13344421 11111
Q ss_pred HHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCC------C--ccChhh-hHhhhcCCCCCcEEEEecCC
Q 043083 229 KAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDG------D--YNKWEP-FFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~------~--~~~~~~-l~~~l~~~~~gs~ilvTtR~ 298 (468)
+. +. ....+.+.....+.+.+ +.++.+|+||+++.- . ..+... +...+..+ .-++|.+|..
T Consensus 254 ---la---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~ 324 (758)
T PRK11034 254 ---LA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTY 324 (758)
T ss_pred ---hc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCCh
Confidence 11 00 00112222222222222 356789999999642 0 111222 22233222 3456666655
Q ss_pred hhHHhh-------hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 299 ESVAHM-------MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 299 ~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
+..... ......+.++.++.++...+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443211 1224579999999999999998653
No 112
>PRK08116 hypothetical protein; Validated
Probab=98.00 E-value=2.5e-05 Score=72.79 Aligned_cols=104 Identities=25% Similarity=0.239 Sum_probs=60.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
..+.|+|.+|+|||.||..+++.. ...-..+++++ ..+++..+........ ..+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 458899999999999999999853 22223356664 3445555544432211 111122 223333333
Q ss_pred EEEEEeccCCCCccChhh--hHhhhcC-CCCCcEEEEecCCh
Q 043083 261 FFLVLDDVWDGDYNKWEP--FFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
||||||+.......|.. +...+.. -..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445543 4444432 13456699999754
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.97 E-value=7.2e-05 Score=81.27 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=83.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccc----cCceEE-EEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIW-VCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~w-v~~~~~~~~~~~ 227 (468)
..++||+.++.+++..|.... ...+.++|++|+|||++|+.+.....-... ....+| +.++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 358999999999999996533 234568999999999999988773211100 122233 2211 11
Q ss_pred HHHHHHhhccCCCChhhHH-HHHHHHHHHhC-CCcEEEEEeccCCCCc-----c--Ch-hhhHhhhcCCCCCcEEEEecC
Q 043083 228 AKAIIEGLDESASSLSEFQ-SLMSHIHRSIE-GKKFFLVLDDVWDGDY-----N--KW-EPFFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~-~l~~~l~~~l~-~k~~LlVlDdv~~~~~-----~--~~-~~l~~~l~~~~~gs~ilvTtR 297 (468)
. . ... ...+.+ .+...+...-+ +++.+|++|+++.-.. . +. +.|...+.. ..-++|.+|.
T Consensus 241 ~----a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt 310 (852)
T TIGR03346 241 I----A---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATT 310 (852)
T ss_pred h----h---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCc
Confidence 1 0 000 001122 22222222222 4689999999974310 0 11 112222211 1235666665
Q ss_pred ChhHHh-------hhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 298 NESVAH-------MMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 298 ~~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
...... .......+.+...+.++...+++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 554321 11224568899999999999888653
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=0.00013 Score=78.99 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc---c-cCc-eEEEEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR---N-FEN-VIWVCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~-F~~-~~wv~~~~~~~~~~~ 227 (468)
..++||+.++.+++..|.... ...+.++|++|+|||+||+.+........ . ... ++++.++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 368999999999999996543 23466999999999999988887321110 0 112 22332222 1
Q ss_pred HHHHHHhhccCCCChhhHH-HHHHHHHHHh-CCCcEEEEEeccCCCCcc-------Chhh-hHhhhcCCCCCcEEEEecC
Q 043083 228 AKAIIEGLDESASSLSEFQ-SLMSHIHRSI-EGKKFFLVLDDVWDGDYN-------KWEP-FFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~-~l~~~l~~~l-~~k~~LlVlDdv~~~~~~-------~~~~-l~~~l~~~~~gs~ilvTtR 297 (468)
. . +.. ...+.+ .+...+.+.. .+++.+|++|+++.-... +... |...+..+ .-++|-+|.
T Consensus 246 ~----a---g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt 315 (857)
T PRK10865 246 V----A---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 315 (857)
T ss_pred h----h---ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCC
Confidence 1 0 000 001111 2222222221 257899999999653210 1112 22223222 345666666
Q ss_pred ChhHHhh-------hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 298 NESVAHM-------MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 298 ~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
....... ......+.+...+.++...+++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5543211 1113356677778888888887543
No 115
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00016 Score=70.26 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=83.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCc--eEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN--VIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
....+.|+|..|.|||.|++.+.+ ......+. ++++ +........+..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~------~se~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL------TSEDFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec------cHHHHHHHHHHHHHhh---------hHHHHHHhh
Confidence 466899999999999999999998 44444442 4444 3334444444443321 123344444
Q ss_pred CCCcEEEEEeccCCCCc-cChh-hhHhhhcC-CCCCcEEEEecCCh---------hHHhhhCCCCeeeCCCCChHHHHHH
Q 043083 257 EGKKFFLVLDDVWDGDY-NKWE-PFFLYLKN-GLHGSKILVTTRNE---------SVAHMMGSTNIIFIEQLAEEECCSL 324 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 324 (468)
.-=++++||++.-.. ..|+ .+...+.. ...|-.||+|++.. .+...+...-.+++.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334899999976221 1222 23333331 12244799999753 2334455567899999999999999
Q ss_pred HHHhhcC
Q 043083 325 LERLAFF 331 (468)
Q Consensus 325 f~~~a~~ 331 (468)
+.+.+..
T Consensus 253 L~kka~~ 259 (408)
T COG0593 253 LRKKAED 259 (408)
T ss_pred HHHHHHh
Confidence 9987643
No 116
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.93 E-value=0.00011 Score=74.10 Aligned_cols=167 Identities=11% Similarity=0.137 Sum_probs=90.4
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcc---cccCceEEEEeCCCc
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVK---RNFENVIWVCVSDTF 222 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~ 222 (468)
.++.|.+..++++.+.+..+-.. +-..++-+.++|++|+|||++|+.+++..... ..+....++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 35778999888887776421100 11234568999999999999999999842211 01123445544431
Q ss_pred CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCCC-------ccCh-----hhhHhhhcCC--C
Q 043083 223 EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDGD-------YNKW-----EPFFLYLKNG--L 287 (468)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~--~ 287 (468)
.++ ...... .......+....+... .+++++|+||+++... .... ..|...+... .
T Consensus 261 ---eLl----~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---ELL----NKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hhc----ccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111 100000 0111222222332222 3578999999996421 0111 2333333321 2
Q ss_pred CCcEEEEecCChhHHh-h-h---CCCCeeeCCCCChHHHHHHHHHhh
Q 043083 288 HGSKILVTTRNESVAH-M-M---GSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 288 ~gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.+..||.||....... . . .....++++..+.++..++|+.+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445666665543321 1 1 124568999999999999999886
No 117
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.92 E-value=0.00055 Score=73.76 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=85.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|.++-++.+.+++............++.++|++|+|||++|+.+++. ....| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 357898888888887664221101123457999999999999999999873 33333 22223332222222110
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC----hhhhHhhhcC--------C-------CCCcEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK----WEPFFLYLKN--------G-------LHGSKIL 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~il 293 (468)
. ..........+...+.... .++-+|+||+++...... ...|...+.. . ..+..+|
T Consensus 393 ---~-~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---R-RTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---C-CceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 0000011122333343332 334478999997653211 1223332211 0 0233445
Q ss_pred EecCChhH-H-hhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 294 VTTRNESV-A-HMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 294 vTtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.||..... . ........+++.+++.++-.++++.+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55544321 1 112334578999999999888887653
No 118
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=7.6e-05 Score=62.00 Aligned_cols=88 Identities=23% Similarity=0.115 Sum_probs=46.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC-
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK- 259 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k- 259 (468)
..+.|+|++|+||||+++.++.. .......++++..+........... ................ ...+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELR-LRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHH-HHHHHHHHHhcC
Confidence 47899999999999999999874 2222223556655443222211111 0011111111112222 22333333333
Q ss_pred cEEEEEeccCCCC
Q 043083 260 KFFLVLDDVWDGD 272 (468)
Q Consensus 260 ~~LlVlDdv~~~~ 272 (468)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997653
No 119
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00019 Score=70.90 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=74.4
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcE
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKF 261 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~ 261 (468)
++.|.|+-++|||||++.+... ..+. .++++..+......-+. +....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~-----------------d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELL-----------------DLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHH-----------------HHHHHHHHhhccCCc
Confidence 9999999999999999766653 1111 45554333211111111 111111121122788
Q ss_pred EEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh-----h-hCCCCeeeCCCCChHHHHH
Q 043083 262 FLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH-----M-MGSTNIIFIEQLAEEECCS 323 (468)
Q Consensus 262 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-----~-~~~~~~~~l~~L~~~e~~~ 323 (468)
+|+||.|+.. ..|......+.+..+. +|++|+-+..... . .+....+++-||+..|...
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 9999999654 6799988888776655 7888888765432 1 2336678999999999865
No 120
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00067 Score=64.51 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=67.6
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
+++-++|+|+++..+...-+.|...+..-..++.+|++|.+. .+. +..+....+.+.+++.+++...+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 556799999998887777788888887766677777777654 332 222335678899999999988886531
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
.. ...+..++..++|.|+....+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2235678999999998665443
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7.1e-05 Score=76.04 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
+.+-+|-++-+++|++.|.-..-...-.-+++++||++|+|||+|++.+++ ...+.| +-++++.--+..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 356789999999999988533221234557999999999999999999997 455554 223444433333321100
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccCh----hhhHhhhc-CCCC------------CcE-EE
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKW----EPFFLYLK-NGLH------------GSK-IL 293 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~----~~l~~~l~-~~~~------------gs~-il 293 (468)
-.-+ + .=...+++.+++. +.++-|++||.++......- ..++..|. ..++ =|. +.
T Consensus 397 RTYI-----G-amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 RTYI-----G-AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cccc-----c-cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0000 0 1112334444333 56778999999976433211 12333332 1111 122 33
Q ss_pred EecCC-hh-H-HhhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 294 VTTRN-ES-V-AHMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 294 vTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
|||-+ -+ + +..+....++++.+.+.+|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44433 22 2 2334446789999999999888887765
No 122
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.86 E-value=0.00077 Score=72.12 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=91.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
...+|.++-+++++++|............++.++|++|+||||+++.++. .....| +-++.+...+...+...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchh
Confidence 45899999999999888632211122445799999999999999999986 233332 2233343333322221111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC----hhhhHhhhcCC---------------CCCcEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK----WEPFFLYLKNG---------------LHGSKIL 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~il 293 (468)
...+. ....+...+... ...+-+|+||.++...... ...|...+... -...-+|
T Consensus 397 ~~~g~------~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS------MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC------CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11111 111233333332 2234578999997654321 23444444221 1234455
Q ss_pred EecCChhHHhh-hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 294 VTTRNESVAHM-MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 294 vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.|+....+... .+....+.+.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55544332221 2235678999999999988887765
No 123
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.83 E-value=0.00028 Score=60.47 Aligned_cols=136 Identities=18% Similarity=0.125 Sum_probs=76.0
Q ss_pred cchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc------------------cccCceEEEEeCC
Q 043083 159 VDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK------------------RNFENVIWVCVSD 220 (468)
Q Consensus 159 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~~~~ 220 (468)
++..+.|...+... .-+..+.++|+.|+||+++|..+.+..--. ...+-..|+.-..
T Consensus 3 ~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 3 EEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 44455566655432 235568999999999999998777631111 1122344443332
Q ss_pred C---cCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecC
Q 043083 221 T---FEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 221 ~---~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 297 (468)
. ....++- .+...+.... ..++.=++|||+++..+...++.|+..+..-..++.+|++|.
T Consensus 78 ~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 78 KKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp SSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred ccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 2 2222221 2222222111 124566899999999888889999999988878899888888
Q ss_pred ChhH--HhhhCCCCeeeCCCC
Q 043083 298 NESV--AHMMGSTNIIFIEQL 316 (468)
Q Consensus 298 ~~~v--~~~~~~~~~~~l~~L 316 (468)
+..- .+..+....+.+.++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE---
T ss_pred ChHHChHHHHhhceEEecCCC
Confidence 7642 222233445555554
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00016 Score=68.79 Aligned_cols=179 Identities=8% Similarity=0.032 Sum_probs=101.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc---Cc-----eEEEEeCCCcCHHHHHHHHHHh
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---EN-----VIWVCVSDTFEEIRVAKAIIEG 234 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i~~~ 234 (468)
+.+...+... .-...+.++|+.|+||+++|..+.....-.... .| .-++..+..++...+..
T Consensus 12 ~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p----- 81 (325)
T PRK06871 12 QQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP----- 81 (325)
T ss_pred HHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-----
Confidence 4455555332 235678899999999999998877531111100 00 00111111111110000
Q ss_pred hccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhhCCCCee
Q 043083 235 LDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMMGSTNII 311 (468)
Q Consensus 235 l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~ 311 (468)
.....-..+...++.+.+... ..+++-++|+|+++..+....+.|...+..-..++.+|++|.+. .+. +..+.-..+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000011122223333333222 13566688999999988888888999998777777777777664 333 222335678
Q ss_pred eCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 312 FIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 312 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
.+.+++.++..+.+..... .. ...+...++.++|.|+.+.
T Consensus 162 ~~~~~~~~~~~~~L~~~~~-----~~----~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS-----AE----ISEILTALRINYGRPLLAL 201 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc-----cC----hHHHHHHHHHcCCCHHHHH
Confidence 9999999999988876531 11 1124567889999997443
No 125
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00057 Score=67.29 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=95.4
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|.+..++++.+.+..+-.. +-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 45788888888777665321110 1124567899999999999999999983 22222 22211 1
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC------c----cC----hhhhHhhhcC--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD------Y----NK----WEPFFLYLKN--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~~~g 289 (468)
.+.... ++ .....+...+.......+.+|+||+++... . .. +..+...+.. ...+
T Consensus 214 ~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111110 11 011122222333335678999999985310 0 01 1122222221 2235
Q ss_pred cEEEEecCChhHHhh--hC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 290 SKILVTTRNESVAHM--MG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 290 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
..||+||...+.... +. ....+.++..+.++...+|+.+..... .....+ ...+++.+.|+-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 678888876543321 11 245688988888888888886653211 111122 345677776643
No 126
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=0.00031 Score=72.75 Aligned_cols=209 Identities=10% Similarity=0.097 Sum_probs=106.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC---CcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD---TFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~ 229 (468)
.+++|-++.++++..++..... .....+++.|+|++|+||||+++.++... .++..-|++-.. ..+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccch
Confidence 4689999999999998865432 12234579999999999999999998732 223333432110 001111112
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHH-------hCCCcEEEEEeccCCCC---ccChhhhHh-hhcCCCCCcEEEEecCC
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRS-------IEGKKFFLVLDDVWDGD---YNKWEPFFL-YLKNGLHGSKILVTTRN 298 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~-------l~~k~~LlVlDdv~~~~---~~~~~~l~~-~l~~~~~gs~ilvTtR~ 298 (468)
.+..++............+....... ..+++.+|+||++.+.. ...+..+.. .....+.-.-|++||-+
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 22222222222222333333332221 13567899999994321 122333333 22222222345555532
Q ss_pred hh---------HH-------hhhC--CCCeeeCCCCChHHHHHHHHHhhcCCCCCC-Cc--cchHHHHHHHHHHcCCchH
Q 043083 299 ES---------VA-------HMMG--STNIIFIEQLAEEECCSLLERLAFFGRSFE-DR--EKLEPMGRKIAHKCKGLPV 357 (468)
Q Consensus 299 ~~---------v~-------~~~~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~-~~--~~~~~~~~~I~~~~~G~Pl 357 (468)
.. .. ..+. ....+.+++++.....+.+...+-...... .. -...+....|+..++|--.
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 00 1111 134589999999997777776653211100 10 0123556778888888655
Q ss_pred HHHHHHHHh
Q 043083 358 AAKVIGNLL 366 (468)
Q Consensus 358 ai~~~~~~L 366 (468)
.+...-.++
T Consensus 319 sAIn~LQf~ 327 (637)
T TIGR00602 319 SAINSLQFS 327 (637)
T ss_pred HHHHHHHHH
Confidence 444443443
No 127
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=0.00016 Score=71.77 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|.+.+++++.+.+.-+-.. +-..++-+.|+|++|+|||+||+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 35678888888887766422110 1123456889999999999999999983 33333 2221111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC--------ccC------hhhhHhhhcC--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD--------YNK------WEPFFLYLKN--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~~g 289 (468)
+.. ...+ .....+...+.....+.+.+|+||+++... ... ...+...+.. ...+
T Consensus 253 -L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1000 011112222223334678899999985310 000 1112222221 2335
Q ss_pred cEEEEecCChhHHhh-h----CCCCeeeCCCCChHHHHHHHHHhhc
Q 043083 290 SKILVTTRNESVAHM-M----GSTNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 290 s~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
..||.||........ + .....+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876544322 1 1245788999999999999997753
No 128
>PRK10536 hypothetical protein; Provisional
Probab=97.80 E-value=0.00016 Score=65.65 Aligned_cols=137 Identities=13% Similarity=0.178 Sum_probs=77.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE----eCC-----CcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC----VSD-----TFE 223 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~----~~~-----~~~ 223 (468)
..+.+|......++.+|.. ..++.++|++|+|||+||..+..+.-..+.|+.++-.. .++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888853 23899999999999999988776422234454333321 111 001
Q ss_pred H----HHHHHHHHHhhccCCCChhhHHHHHH--------HHHHHhCCCcE---EEEEeccCCCCccChhhhHhhhcCCCC
Q 043083 224 E----IRVAKAIIEGLDESASSLSEFQSLMS--------HIHRSIEGKKF---FLVLDDVWDGDYNKWEPFFLYLKNGLH 288 (468)
Q Consensus 224 ~----~~~~~~i~~~l~~~~~~~~~~~~l~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 288 (468)
. .-.+.-+...+..-.. ....+.+.. .=..++++..+ +||+|+..+.+. ..+...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 1 1112222222221100 011111110 01135677655 999999987654 445555555667
Q ss_pred CcEEEEecCChhH
Q 043083 289 GSKILVTTRNESV 301 (468)
Q Consensus 289 gs~ilvTtR~~~v 301 (468)
+|++|+|--..++
T Consensus 203 ~sk~v~~GD~~Qi 215 (262)
T PRK10536 203 NVTVIVNGDITQC 215 (262)
T ss_pred CCEEEEeCChhhc
Confidence 9999998876543
No 129
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0004 Score=66.94 Aligned_cols=164 Identities=10% Similarity=0.034 Sum_probs=88.7
Q ss_pred eee-ccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH-
Q 043083 155 VCG-RVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII- 232 (468)
Q Consensus 155 ~vG-R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~- 232 (468)
++| -+.-++.+...+... .-.....++|+.|+|||++|..+.+..--....... .++...+...+....-
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHHHHHHhcCCCC
Confidence 455 444555666666432 245677999999999999998876531111100000 0000000000000000
Q ss_pred --HhhccCCCChhhHHHHHHHHHHH----hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HHh-h
Q 043083 233 --EGLDESASSLSEFQSLMSHIHRS----IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VAH-M 304 (468)
Q Consensus 233 --~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~ 304 (468)
..+.. .......+++.+.+... ..+.+-++|+|+++..+....+.|...+..-..++.+|++|.+.. +.. .
T Consensus 79 D~~~i~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 79 DVHLVAP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CEEEecc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 00000 00011122322222211 235566899999988777777888888887667777777776543 222 2
Q ss_pred hCCCCeeeCCCCChHHHHHHHHH
Q 043083 305 MGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 305 ~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
.+....+++.+++.++....+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 23356789999999999888865
No 130
>PRK08181 transposase; Validated
Probab=97.78 E-value=7.9e-05 Score=69.11 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=56.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
.-+.|+|++|+|||.||..+.+. .......++|++ ..+++..+...... .+.......+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~~-----~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARRE-----LQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHhC-----CcHHHHHHHH-----hcC
Confidence 35899999999999999998873 222223356664 34455544332110 1122222222 234
Q ss_pred EEEEEeccCCCCccChh--hhHhhhcCCCCCcEEEEecCCh
Q 043083 261 FFLVLDDVWDGDYNKWE--PFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
-||||||+.......|. .+...+.....+..+|+||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999654433332 3444444221123588888764
No 131
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.78 E-value=0.0021 Score=62.37 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=114.2
Q ss_pred ccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHH-HHHhcChhcccccCceEEEEeCCC---cCHHHHHHHHHH
Q 043083 158 RVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILA-QLAYNNDEVKRNFENVIWVCVSDT---FEEIRVAKAIIE 233 (468)
Q Consensus 158 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~ 233 (468)
|.+..++|..||.... -.+|.|.||-|+||+.|+ .++..+.+. ++.+.|.+- .+...++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997543 469999999999999999 777764221 444433221 112222222222
Q ss_pred h-----------------------hccCCCC-hhh----HHHH----HHHHHH-------------------HhC---CC
Q 043083 234 G-----------------------LDESASS-LSE----FQSL----MSHIHR-------------------SIE---GK 259 (468)
Q Consensus 234 ~-----------------------l~~~~~~-~~~----~~~l----~~~l~~-------------------~l~---~k 259 (468)
+ +.++..+ ..+ +..+ ...|++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 2 2222111 111 1111 111211 111 22
Q ss_pred cEEEEEeccCCCCcc---ChhhhHhh---hcCCCCCcEEEEecCChhHHh----hhCC--CCeeeCCCCChHHHHHHHHH
Q 043083 260 KFFLVLDDVWDGDYN---KWEPFFLY---LKNGLHGSKILVTTRNESVAH----MMGS--TNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~---~~~~l~~~---l~~~~~gs~ilvTtR~~~v~~----~~~~--~~~~~l~~L~~~e~~~Lf~~ 327 (468)
+-+||+|++-..... -|+.|... +-.+ +=..||++|-+..... .+.. .+.+.|...+++.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 579999999553221 22333222 1222 2346777777754433 3322 56789999999999999998
Q ss_pred hhcCCCCC------------CCc----cchHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 043083 328 LAFFGRSF------------EDR----EKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR 370 (468)
Q Consensus 328 ~a~~~~~~------------~~~----~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~ 370 (468)
+....... ... .....-....+..+||=-.-+..+++.++...
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe 286 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE 286 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 87433110 000 12334456678889999999999999998765
No 132
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0013 Score=62.61 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=67.8
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
++.-++|+|+++..+....+.|...+..-..++.+|++|.+. .+. +..+.-..+.+.+++.+++.+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 455689999999888888888999998766777777766654 332 333335678999999999998886531
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.. ....+++.++|.|+....+
T Consensus 181 ~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred Cc------hHHHHHHHcCCCHHHHHHH
Confidence 11 1346789999999977654
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=97.74 E-value=0.00055 Score=71.37 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=97.7
Q ss_pred CceeeccchHHHH---HHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNEL---LSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l---~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.++.|.++..+++ ++.|..... -+...++-+.++|++|+|||+||+.++... . +-++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----HH
Confidence 3577876655544 444432211 011234568999999999999999998732 1 22333321 11
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC----------ccChhh-hHhh---hcC--CCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD----------YNKWEP-FFLY---LKN--GLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~-l~~~---l~~--~~~gs 290 (468)
+... . .+ .....+...+.......+++|+|||++.-. ...+.. +... +.. ...+.
T Consensus 252 f~~~-~--~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEM-F--VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH-h--hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1100 0 00 011223334444556788999999995421 111222 2222 221 23455
Q ss_pred EEEEecCChhHHh-h-h---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHH
Q 043083 291 KILVTTRNESVAH-M-M---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKV 361 (468)
Q Consensus 291 ~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~ 361 (468)
.||.||....... . . .....+.+...+.++-.++++.++.... . ........+++.+.| .+--|..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~--~~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L--SPDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c--chhHHHHHHHhcCCCCCHHHHHH
Confidence 6777776644322 1 1 1246788899999999999988764311 1 112234667888877 4433433
No 134
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00098 Score=69.71 Aligned_cols=122 Identities=16% Similarity=0.299 Sum_probs=75.2
Q ss_pred ceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc---CceEEEEeCCCcCHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---ENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~ 227 (468)
.++|-+..+..+.+.+..... ..+........+|+.|+|||.||+.+... -| +..+-+..|.--..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~Ek--- 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEK--- 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHH---
Confidence 578888888888777754332 13345678888999999999999888762 23 23333433332111
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcE-EEEEeccCCCCccChhhhHhhhcCC
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKF-FLVLDDVWDGDYNKWEPFFLYLKNG 286 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 286 (468)
.-...|-+.+++--..++ -..|.+..+.++| +|.||++....+..++.|...|.++
T Consensus 564 --HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 --HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122333334333211111 2234555667777 8889999888877788888887654
No 135
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.74 E-value=7.2e-05 Score=67.56 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=29.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV 218 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 218 (468)
+-.++|+|..|+|||||+..+.. .....|.++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 44688999999999999998887 46678877777654
No 136
>PRK12377 putative replication protein; Provisional
Probab=97.73 E-value=0.00011 Score=67.30 Aligned_cols=103 Identities=21% Similarity=0.137 Sum_probs=58.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|.+|+|||+||..+++.. ......++++++. +++..+-...... .....+ + +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEKF---L-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHHH---H-HHh-cC
Confidence 3578999999999999999999843 2333345666543 3444443332111 111122 2 222 45
Q ss_pred cEEEEEeccCCCCccChhh--hHhhhcCC-CCCcEEEEecCCh
Q 043083 260 KFFLVLDDVWDGDYNKWEP--FFLYLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 299 (468)
--||||||+.......|.. |...+... .+..-+|+||...
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6699999996554445543 44444321 2223478887643
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.73 E-value=0.0016 Score=60.72 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=58.7
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH------------HhhccCCCChhhHHHHH
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII------------EGLDESASSLSEFQSLM 249 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~------------~~l~~~~~~~~~~~~l~ 249 (468)
.|.|.|++|+|||+||+.+.. .... ..+.+++....+..+++.... ......... .+..-..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI-VRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc-cceeecC
Confidence 567999999999999999986 2222 245566666555554443211 000000000 0000000
Q ss_pred HHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC----------------CCCcEEEEecCCh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG----------------LHGSKILVTTRNE 299 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~ilvTtR~~ 299 (468)
..+.... .+...|++|++...+......|...+..+ .++.+||+|+...
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 0111111 23468999999876666666666665321 1356788888754
No 138
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0026 Score=64.83 Aligned_cols=166 Identities=15% Similarity=0.205 Sum_probs=92.4
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
+.+-+|.++-++++++.+.-..-.++.+.++++.+|++|+|||++|+.++. ...+.| +-++++.-.+..++-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 456799999999999988533222345678999999999999999999987 444443 223455544444332110
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC----hhhhHhhhc-CC------------CCCcEEEE
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK----WEPFFLYLK-NG------------LHGSKILV 294 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~-~~------------~~gs~ilv 294 (468)
-.-++ .-...+++.|+.. +..+-|+.||.|+.-.... -..|...|. .. --=|+|++
T Consensus 485 RTYVG------AMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 RTYVG------AMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eeeec------cCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 00000 1112334444333 4567788999985421111 112222221 11 11255554
Q ss_pred ecCChhHH----hhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 295 TTRNESVA----HMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 295 TtR~~~v~----~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
......+. ........|++.+...+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 43332221 112235688899999888777766654
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.72 E-value=0.00033 Score=75.94 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=76.0
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.+++. ....-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---
Confidence 3588999988888887754321 01223357889999999999999998863 211112234444433211 11
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhC-CCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecC
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIE-GKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTR 297 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 297 (468)
....+-+..+.....+. ...+...++ ...-+|+||++...+...+..|...+..+. ..+-||+||.
T Consensus 642 -~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 -SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred -hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11222222221111000 011223332 233699999998877777777877775431 2233777887
Q ss_pred C
Q 043083 298 N 298 (468)
Q Consensus 298 ~ 298 (468)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 140
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.71 E-value=0.00081 Score=68.80 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=95.1
Q ss_pred CceeeccchHHHHHHHhh---cCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLL---CESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|-+..++++.+.+. .... .+...++-+.++|++|+|||+||+.+++.. ... ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 467787766655544332 1110 011234558899999999999999998732 212 222221 11
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC----------ccChhh----hHhhhc--CCCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD----------YNKWEP----FFLYLK--NGLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~gs 290 (468)
+.. .... .....+...+.......+++|+|||++.-. ...+.. +...+. ....+.
T Consensus 124 ~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1000 011223333344445677999999995421 011222 222222 122345
Q ss_pred EEEEecCChhHHh-hh----CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHH
Q 043083 291 KILVTTRNESVAH-MM----GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVI 362 (468)
Q Consensus 291 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~ 362 (468)
.||.||....... .+ .....+.++..+.++-.++|+.+...... ... .....+++.+.| .+--|..+
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHH
Confidence 5666776543211 11 22467889989998889999877632211 111 123477888877 44444444
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00045 Score=74.02 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=69.5
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|-+..++.+...+..... ..+....++.++|+.|+|||+||+.++.. . +...+.++.+.-.+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcccH--
Confidence 3578888888888777763211 01223457899999999999999999873 2 223455555442221111
Q ss_pred HHHHhhccCCC--ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcC
Q 043083 230 AIIEGLDESAS--SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKN 285 (468)
Q Consensus 230 ~i~~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 285 (468)
...++.... +......+...++ .....+++||+++......++.|...+..
T Consensus 527 --~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 527 --SRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred --HHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 111111111 1111222222222 23456999999998877777777777754
No 142
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.68 E-value=0.0031 Score=60.90 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=94.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc--cccC---ceEEEEeCCCcCHHHHHHHHHHhh
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK--RNFE---NVIWVCVSDTFEEIRVAKAIIEGL 235 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F~---~~~wv~~~~~~~~~~~~~~i~~~l 235 (468)
-.+.|.+.+..... ..+.+|+|.|.=|+|||++.+.+.+..... ..+. .-.|-......-...++..|..++
T Consensus 4 ~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 4 YAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred HHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 34566666654431 468899999999999999999888743222 1121 123333332222334444444443
Q ss_pred ccCCC------------------------------------------------------------------ChhhHHHHH
Q 043083 236 DESAS------------------------------------------------------------------SLSEFQSLM 249 (468)
Q Consensus 236 ~~~~~------------------------------------------------------------------~~~~~~~l~ 249 (468)
..... ...+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T PF07693_consen 81 EKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELI 160 (325)
T ss_pred HHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHH
Confidence 22100 001122234
Q ss_pred HHHHHHh--CCCcEEEEEeccCCCCccChhhhHhhhc--CCCCCcEEEEecCChhHHhhhCC------------------
Q 043083 250 SHIHRSI--EGKKFFLVLDDVWDGDYNKWEPFFLYLK--NGLHGSKILVTTRNESVAHMMGS------------------ 307 (468)
Q Consensus 250 ~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~------------------ 307 (468)
..+.+.+ .++|.++++||++..++.....+...+. -..+++.+|+..-...+...+..
T Consensus 161 ~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 161 SKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred HHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 4555555 3579999999998866554444444443 12357777777665554432211
Q ss_pred -CCeeeCCCCChHHHHHHHHHh
Q 043083 308 -TNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 308 -~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
..++.+++.+..+-..+|...
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHH
Confidence 345788999988877777766
No 143
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.66 E-value=0.00052 Score=74.66 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=78.0
Q ss_pred CceeeccchHHHHHHHhhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|.+..++.+...+.....+ .+....++.++|++|+|||++|+.+... ....-...+.++++...+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 35899999999998888653210 1123467889999999999999998863 2111122344444432221111
Q ss_pred HHHHhhccCCCC---hhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEe
Q 043083 230 AIIEGLDESASS---LSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVT 295 (468)
Q Consensus 230 ~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 295 (468)
..+-+..+. ......+...++ .....+|+||++...+...++.|...+..+. ..+-||+|
T Consensus 641 ---~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 ---ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 111111111 111122222222 2334599999999888778888888775431 23447777
Q ss_pred cCC
Q 043083 296 TRN 298 (468)
Q Consensus 296 tR~ 298 (468)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 775
No 144
>PRK06526 transposase; Provisional
Probab=97.64 E-value=0.0001 Score=68.02 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=54.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|++|+|||+||..+..... ...+. +.|+ +..+++..+...... ..+...+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHHA--------GRLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHh--cc
Confidence 34689999999999999998887422 22232 3333 334444444332110 0111223222 23
Q ss_pred cEEEEEeccCCCCccChh--hhHhhhcC-CCCCcEEEEecCCh
Q 043083 260 KFFLVLDDVWDGDYNKWE--PFFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
.-||||||+.......+. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 468999999654322332 24444432 22344 88888765
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0002 Score=71.74 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=115.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|-+.-...|...+.... -..--...|+.|+||||+|+.++...--... ....++..-...+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 357998888888888886443 3445668899999999999887752111100 0001111111111221
Q ss_pred Hh--------hccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-H-
Q 043083 233 EG--------LDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-V- 301 (468)
Q Consensus 233 ~~--------l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v- 301 (468)
.. =..+....++..++.+...-.- +++-=+.|+|.|+-.+...|+.|..-+..-..+...|+.|.+.. +
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0011112333333333332221 34445899999998888889998888877667777777666643 2
Q ss_pred HhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 302 AHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
.+.++....+.+..++.++....+...+..... .-..+....|++..+|...-...+
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~RDalsl 220 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLRDALSL 220 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChhhHHHH
Confidence 233444678999999999999988887643322 223455667888888866544433
No 146
>PRK09183 transposase/IS protein; Provisional
Probab=97.61 E-value=0.00026 Score=65.73 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=53.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
..+.|+|++|+|||+||..+..... ...+ .+.+++ ..++...+....... .+...+...+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~~--------~~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQG--------RYKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHCC--------cHHHHHHHHh-cCC
Confidence 4678999999999999999876322 2222 233443 223333332221110 1112222222 345
Q ss_pred EEEEEeccCCCCccChh--hhHhhhcC-CCCCcEEEEecCCh
Q 043083 261 FFLVLDDVWDGDYNKWE--PFFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
-++|+||+.......+. .+...+.. -..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999754333333 34444432 12344 88888754
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.61 E-value=0.00017 Score=77.96 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=77.1
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|-+..++.+.+.+..... ..+....++.++|+.|+|||.||+.+... .-......+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999888854311 12234568899999999999999887763 21111222333333211111
Q ss_pred HHHHhhccCCCC---hhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEe
Q 043083 230 AIIEGLDESASS---LSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVT 295 (468)
Q Consensus 230 ~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 295 (468)
. ...+-+..+. ......+...++ +....+|+||++...+...++.|...+..+. ..+-||+|
T Consensus 640 ~-~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 T-VSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred h-hccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1 1112122111 111122223332 2455799999998877777777777775442 34567777
Q ss_pred cCC
Q 043083 296 TRN 298 (468)
Q Consensus 296 tR~ 298 (468)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 148
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.61 E-value=0.0028 Score=64.59 Aligned_cols=209 Identities=13% Similarity=0.095 Sum_probs=131.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh---cccccCc--eEEEEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE---VKRNFEN--VIWVCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~F~~--~~wv~~~~~~~~~~~ 227 (468)
..+-+|+.|..+|...+...-+. ....+.+-|.|-+|+|||..+..|.+... .++.-+. .+.++.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 34678999999998888665542 23455899999999999999999987422 1222222 334454455678999
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHh-----CCCcEEEEEeccCCCCccChhhhHhhhcC-CCCCcEEEEecCCh--
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHRSI-----EGKKFFLVLDDVWDGDYNKWEPFFLYLKN-GLHGSKILVTTRNE-- 299 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~-- 299 (468)
+..|..++.+.... .....+.|..+. ..+.+++++|+++..-...-+-+...|.+ ..++|+++|.+-..
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 99999999876432 122233344433 24568999998844221222335555543 45677766654321
Q ss_pred hH---------HhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhc
Q 043083 300 SV---------AHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLR 367 (468)
Q Consensus 300 ~v---------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 367 (468)
+. +..++ ...+...|.+.++-.++...+..+.. .......+-++++|+.-.|-.-.|+...-++..
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 11112 34677889999999999888875442 233344555677788777777777777655544
No 149
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0026 Score=61.17 Aligned_cols=181 Identities=10% Similarity=0.048 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc---Cc-----eEEEEeCCCcCHHHHHHHHHH
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---EN-----VIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i~~ 233 (468)
-+++...+... .-..-+.++|+.|+||+++|..+.....-...- .| .-++..+..++...+.-
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p---- 81 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP---- 81 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec----
Confidence 34566655432 346678899999999999998766521100000 00 00111111111110000
Q ss_pred hhccCCCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhhCCCCe
Q 043083 234 GLDESASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMMGSTNI 310 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~ 310 (468)
.-+...-..+...++.+.+... ..+++-++|+|+.+..+....+.|...|..-..++.+|++|.+. .+. +..+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0000001112222222222221 13667799999999888888888999888766677777777664 333 22333457
Q ss_pred eeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 311 IFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 311 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
+.+.+++.+++...+..... . ..+.+..++..++|.|....
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~-----~----~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT-----M----SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC-----C----CHHHHHHHHHHcCCCHHHHH
Confidence 88999999999888765321 1 12335678999999997443
No 150
>PRK06921 hypothetical protein; Provisional
Probab=97.59 E-value=0.00034 Score=65.07 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=55.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccc-cCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRN-FENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
...+.++|..|+|||+||..+++. .... -..+++++.. +++..+.... ......+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 457899999999999999999984 3222 2346666542 3333332211 111112222 2 2
Q ss_pred CcEEEEEeccCC-----CCccChhh--hHhhhcCC-CCCcEEEEecCCh
Q 043083 259 KKFFLVLDDVWD-----GDYNKWEP--FFLYLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 259 k~~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 299 (468)
+-=||||||+.. .....|.. +...+... ..+..+|+||...
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 456999999933 22234543 44444321 2244588888753
No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=3.4e-05 Score=66.56 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=27.3
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcc-cccCceEE
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVK-RNFENVIW 215 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 215 (468)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854443 45676776
No 152
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00044 Score=63.19 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=58.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... ...+... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 34789999999999999999998532 2223455663 34444444333221 1111122 222333 3
Q ss_pred cEEEEEeccCCCCccChhh--hHhhhcC-CCCCcEEEEecCCh
Q 043083 260 KFFLVLDDVWDGDYNKWEP--FFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
.=||||||+.......|.. +...+.. -.....+|+||...
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 4588999997765556664 3334432 12233477777643
No 153
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00073 Score=64.88 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
++.-++|+|+++..+...++.|...+..-.+++.+|++|.+ ..+. +..+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 55568999999998888899999999876667766666655 3333 323335688999999999998887641 0
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
. . ...++..++|.|+....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755544
No 154
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.51 E-value=0.00057 Score=64.88 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=69.7
Q ss_pred eccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhc
Q 043083 157 GRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLD 236 (468)
Q Consensus 157 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 236 (468)
+|..-.....+++..... .....-+.|+|..|+|||.||..+++... ...+. +.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHHh
Confidence 344444445555543221 11345689999999999999999998532 22333 5556443 45555544432
Q ss_pred cCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhh--hHhhh-cCC-CCCcEEEEecCCh
Q 043083 237 ESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEP--FFLYL-KNG-LHGSKILVTTRNE 299 (468)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~~ 299 (468)
.. +... .+.. + .+-=||||||+.......|.. +...+ ... ..+..+|+||...
T Consensus 205 ~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 DG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred cC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 11 1122 2222 2 355689999998766667754 44443 321 2345588888643
No 155
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.003 Score=59.36 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=96.6
Q ss_pred ceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+=|-++++++|.+...-+-.+ +-..++=|.++|++|.|||-||++|++. ....| +.+..+ +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----H
Confidence 4557788888887776543321 1235677899999999999999999993 33333 332221 1
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCC-----------CccChh---hhHhhhcCC--CCC
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDG-----------DYNKWE---PFFLYLKNG--LHG 289 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~---~l~~~l~~~--~~g 289 (468)
+.+.- ++ +-..++..+-+.. .+.++.|.+|.++.- +.+.-. +|...+... ...
T Consensus 221 lVqKY---iG-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKY---IG-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHH---hc-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 21111 11 1123444444444 356899999988431 111111 223333322 234
Q ss_pred cEEEEecCChhHHhh--hC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 290 SKILVTTRNESVAHM--MG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 290 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
.|||..|...++... +. -...++++.-+.+.-.++|+-++.. -+....-++ ..+++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCc
Confidence 588888877655321 12 2567788755555555666655422 222222333 35677777654
No 156
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.49 E-value=0.0019 Score=61.62 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+..+.|+|++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999984
No 157
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0037 Score=61.57 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=90.8
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
..+..+.+.|++|+|||+||..++. ...|+.+--++... + ++.. .......+........+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~------m-------iG~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPED------M-------IGLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHH------c-------cCcc--HHHHHHHHHHHHHHhhc
Confidence 4677888999999999999998886 35676544332111 1 1111 11122333344444556
Q ss_pred CCcEEEEEeccCCCCccCh------------hhhHhhhcCC-CCCcE--EEEecCChhHHhhhCC----CCeeeCCCCCh
Q 043083 258 GKKFFLVLDDVWDGDYNKW------------EPFFLYLKNG-LHGSK--ILVTTRNESVAHMMGS----TNIIFIEQLAE 318 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~------------~~l~~~l~~~-~~gs~--ilvTtR~~~v~~~~~~----~~~~~l~~L~~ 318 (468)
..--.||+||+.. ..+| ..|...|... ..|-| |+-||....+...|+- ...|+++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6677999999943 1223 2333344332 23444 4556666777766653 56788999988
Q ss_pred -HHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHH
Q 043083 319 -EECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNL 365 (468)
Q Consensus 319 -~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 365 (468)
++..+.+...- .-.+...+.++.+...+| +-..|+-+-.+
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~--~~vgIKklL~l 715 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK--VNVGIKKLLML 715 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc--cchhHHHHHHH
Confidence 66777766542 122334455556666666 22334444433
No 158
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.47 E-value=0.00046 Score=68.45 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=83.6
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH-H
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI-I 232 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-~ 232 (468)
.++||++.++.+...++... .|.|.|++|+|||+||+.+.........|.. +.+.-. .+.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHH
Confidence 58999999999998887544 5899999999999999998873222223332 111100 122222211 1
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCC---CcEEEEEeccCCCCccChhhhHhhhcCCC---------CCcEEEEecCChh
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEG---KKFFLVLDDVWDGDYNKWEPFFLYLKNGL---------HGSKILVTTRNES 300 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~ilvTtR~~~ 300 (468)
...... ..+.....+ ..-++++|+++..+......|...+.... -..++++++.++-
T Consensus 89 ~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 111000 001111111 12289999999877766677777763211 1224655555532
Q ss_pred HH------hhhCC-CCeeeCCCCChH-HHHHHHHHh
Q 043083 301 VA------HMMGS-TNIIFIEQLAEE-ECCSLLERL 328 (468)
Q Consensus 301 v~------~~~~~-~~~~~l~~L~~~-e~~~Lf~~~ 328 (468)
.. ..+.. .-.+.+++++.+ +-.+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11 11111 335788999854 447777653
No 159
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=3.3e-05 Score=64.56 Aligned_cols=89 Identities=25% Similarity=0.255 Sum_probs=48.4
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEE
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFF 262 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~L 262 (468)
|.|+|++|+|||+||+.++.. ... ...-+.++...+..+++...--. ... ....+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc-ccccc-ccccccc-----cceeE
Confidence 679999999999999999872 211 13446677777776665322111 000 00000 0000000 17889
Q ss_pred EEEeccCCCCccChhhhHhhhc
Q 043083 263 LVLDDVWDGDYNKWEPFFLYLK 284 (468)
Q Consensus 263 lVlDdv~~~~~~~~~~l~~~l~ 284 (468)
+|||++...+...+..|...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997655555555555553
No 160
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.45 E-value=0.00017 Score=62.83 Aligned_cols=101 Identities=22% Similarity=0.394 Sum_probs=51.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
..-+.|+|.+|+|||.||..+.+.. +...+ .+.|++ ..+++..+-. .... ........ . +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~------~~~L~~~l~~----~~~~-~~~~~~~~---~-l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFIT------ASDLLDELKQ----SRSD-GSYEELLK---R-LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEE------HHHHHHHHHC----CHCC-TTHCHHHH---H-HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEee------cCceeccccc----cccc-cchhhhcC---c-cc-c
Confidence 4569999999999999999888742 22233 356664 3444444432 1111 11222222 2 22 3
Q ss_pred cEEEEEeccCCCCccChhh--hHhhhcCC-CCCcEEEEecCCh
Q 043083 260 KFFLVLDDVWDGDYNKWEP--FFLYLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 299 (468)
-=||||||+.......|.. +...+... .++ .+|+||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 4578899997654444432 33333211 223 478888754
No 161
>PRK04296 thymidine kinase; Provisional
Probab=97.45 E-value=0.00026 Score=62.49 Aligned_cols=113 Identities=12% Similarity=0.014 Sum_probs=60.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC--hhhHHHHHHHHHHHhCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS--LSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l~~ 258 (468)
.++.|+|+.|.||||++..+... ...+-..++.+. ..++.......++..++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999777763 222222233331 1112222233345555432211 1233444444444 334
Q ss_pred CcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 259 KKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
+.-+||+|.+...+......+...+ ...|..|++|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4559999999553322222333333 234778999998754
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=97.44 E-value=0.0044 Score=66.21 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=98.6
Q ss_pred cCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC-CCcEEEEE
Q 043083 188 LGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE-GKKFFLVL 265 (468)
Q Consensus 188 ~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVl 265 (468)
|.++||||+|..++++. ..+.+. .++-++.++...... .++++.......+ +. .+.-++||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 78899999999999842 122332 256677776544432 2333332211110 11 24579999
Q ss_pred eccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHH
Q 043083 266 DDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEP 343 (468)
Q Consensus 266 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~ 343 (468)
|+++..+....+.|...+..-...+++|++|.+. .+...+ +....+.+.+++.++....+...+...+ ..-..+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg----i~i~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG----LELTEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC----CCCCHH
Confidence 9999887777788888887655567777766654 332222 2256889999999999888876653221 111245
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 043083 344 MGRKIAHKCKGLPVAAKVIGNL 365 (468)
Q Consensus 344 ~~~~I~~~~~G~Plai~~~~~~ 365 (468)
....|++.|+|.+..+..+-..
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 6788999999988665544443
No 163
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.44 E-value=0.00081 Score=60.44 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhh-c-------c-CCCChhhHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGL-D-------E-SASSLSEFQSL 248 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-~-------~-~~~~~~~~~~l 248 (468)
..-.++.|+|++|+|||+++.++... ....-..++|++... ++..++.+. .... . . ......+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 34679999999999999999887763 223345689998876 665554432 2221 0 0 01112233334
Q ss_pred HHHHHHHhCC-CcEEEEEeccC
Q 043083 249 MSHIHRSIEG-KKFFLVLDDVW 269 (468)
Q Consensus 249 ~~~l~~~l~~-k~~LlVlDdv~ 269 (468)
...+...+.. +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555543 56689999884
No 164
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.43 E-value=0.00065 Score=60.03 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=62.8
Q ss_pred eccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC------cCHHH----
Q 043083 157 GRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT------FEEIR---- 226 (468)
Q Consensus 157 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~------~~~~~---- 226 (468)
.+..+-...++.|. ...++.+.|++|.|||.||....-+.-..+.|+.++++.-.-. |-+-+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34455566677775 2348999999999999999777655444577887777642111 00001
Q ss_pred ---HHHHHHHhhccCCCChhhHHHHHHH------HHHHhCCC---cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE
Q 043083 227 ---VAKAIIEGLDESASSLSEFQSLMSH------IHRSIEGK---KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV 294 (468)
Q Consensus 227 ---~~~~i~~~l~~~~~~~~~~~~l~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 294 (468)
.+.-+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+.+.. .+...+...+.||++++
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE---ELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHH---HHHHHHcccCCCcEEEE
Confidence 1111122221111 01112222110 01234554 369999999876554 44555666677999999
Q ss_pred ecCChhH
Q 043083 295 TTRNESV 301 (468)
Q Consensus 295 TtR~~~v 301 (468)
+--..+.
T Consensus 152 ~GD~~Q~ 158 (205)
T PF02562_consen 152 TGDPSQI 158 (205)
T ss_dssp EE-----
T ss_pred ecCceee
Confidence 8766543
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.0004 Score=66.46 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
..+.++|..|+|||+||..+++... ... ..++++++. +++..+...-. . ...+.... + +.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~~------~l~~~l~~~~~-~--~~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTAD------ELIEILREIRF-N--NDKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEHH------HHHHHHHHHHh-c--cchhHHHH---H-HHhc-cC
Confidence 5699999999999999999988432 222 246666543 33333322111 1 01111111 2 2222 23
Q ss_pred EEEEEeccCCCCccChh--hhHhhhcCC-CCCcEEEEecCCh
Q 043083 261 FFLVLDDVWDGDYNKWE--PFFLYLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 299 (468)
=||||||+.......|. .+...+... ..+..+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 48999999765444443 344444321 2244588888753
No 166
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.42 E-value=0.0022 Score=59.79 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=98.6
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC-hhcccccCceEEEEeCCCcCH-HHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN-DEVKRNFENVIWVCVSDTFEE-IRVAKAI 231 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~~~-~~~~~~i 231 (468)
.++|-.++..++-.++....- .+...-|.|+|+.|+|||+|......+ ..+.++ .+-|........ .-.+..|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 589999998888887754321 123346889999999999999888775 122233 444555443322 2345556
Q ss_pred HHhhccCCC----C----hhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccCh-hhhHhhhc----CCCCCcEEEEec
Q 043083 232 IEGLDESAS----S----LSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKW-EPFFLYLK----NGLHGSKILVTT 296 (468)
Q Consensus 232 ~~~l~~~~~----~----~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~-~~l~~~l~----~~~~gs~ilvTt 296 (468)
..++..... . ..+...+...|..-- .+-++++|+|.++-.....- ..+...|. ...+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 555543211 1 223333333333321 12357888888754322211 22333332 234567788899
Q ss_pred CChhH-------HhhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 297 RNESV-------AHMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 297 R~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
|-.-. -..++...++-++.++.++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 87532 2223333456678899999999999876
No 167
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00093 Score=64.20 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=64.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-ccCc-eEEEEeCC-CcCHHHHHHHHHHhhcc
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-NFEN-VIWVCVSD-TFEEIRVAKAIIEGLDE 237 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~-~~~~~~~~~~i~~~l~~ 237 (468)
-..++++.+..-. ....+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+ ..++.++...+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455777776332 3346799999999999999998873 322 2234 46777766 45778888888877765
Q ss_pred CCCChhh-----HHHHHHHHHHHh--CCCcEEEEEeccC
Q 043083 238 SASSLSE-----FQSLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 238 ~~~~~~~-----~~~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
...+... .......+.+++ ++++.+||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 4322111 111122222223 5899999999993
No 168
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.0011 Score=57.80 Aligned_cols=37 Identities=41% Similarity=0.698 Sum_probs=28.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEE
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWV 216 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 216 (468)
+...+|.|.|++|+||||+|+.+++ .....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 3566999999999999999999987 444455555555
No 169
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.40 E-value=0.001 Score=58.64 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=34.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++||-++.++.+.-... +++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 468998888887765553 24677899999999999998877776
No 170
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.0015 Score=58.50 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=98.0
Q ss_pred CceeeccchHHH---HHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNE---LLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
.+++|.++.+.+ |++.|..+..=+...++-|..+|++|.|||.+|+.+.+...+ .| +.+.. .+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka----t~li- 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA----TELI- 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech----HHHH-
Confidence 457888776654 456665544334567899999999999999999999995332 22 11111 1111
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC--------ccCh----hhhHhhhc--CCCCCcEEEEe
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD--------YNKW----EPFFLYLK--NGLHGSKILVT 295 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~----~~l~~~l~--~~~~gs~ilvT 295 (468)
-+..+ +...++.+...+.-+.-+|++.||.++.-. ..+. +.|+.-+. ..+.|...|..
T Consensus 189 --GehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 189 --GEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred --HHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 11111 111122222222234568999999874310 0112 22222232 23456666777
Q ss_pred cCChhHHhh-h--CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 296 TRNESVAHM-M--GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 296 tR~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
|.+...... + .....++...-+++|-.+++..++..-.- + ...-.+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-p----v~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-P----VDADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-c----cccCHHHHHHHhCCC
Confidence 766654332 1 12456777777889999999888742211 1 111145677777775
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0011 Score=63.90 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=81.4
Q ss_pred eeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-------------------ccCceEE
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-------------------NFENVIW 215 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 215 (468)
++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 5666777788888886433 1333599999999999999988877421111 1123444
Q ss_pred EEeCCCcC---HHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEE
Q 043083 216 VCVSDTFE---EIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 216 v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
++.+.... ..+..+++.+...... ..++.-++++|+++..+...-+.+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 44333322 1222222222221111 0256779999999887666666677777666677888
Q ss_pred EEecCCh-hHHhhh-CCCCeeeCCC
Q 043083 293 LVTTRNE-SVAHMM-GSTNIIFIEQ 315 (468)
Q Consensus 293 lvTtR~~-~v~~~~-~~~~~~~l~~ 315 (468)
|++|... .+...+ +....+.+.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8888743 222211 1134556665
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.36 E-value=0.00063 Score=73.77 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=76.0
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|-+..++.+...+..... ..+.....+.++|+.|+|||+||+.+.+. .-..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 4578988888888777753221 11223456778999999999999988762 11111223334443322211111
Q ss_pred HHHHhhccCCCC---hhhHHHHHHHHHHHhCCCc-EEEEEeccCCCCccChhhhHhhhcCC-----------CCCcEEEE
Q 043083 230 AIIEGLDESASS---LSEFQSLMSHIHRSIEGKK-FFLVLDDVWDGDYNKWEPFFLYLKNG-----------LHGSKILV 294 (468)
Q Consensus 230 ~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilv 294 (468)
.-++ .++. ...... +.+.++.++ .+++||+++..+...++.|...+..+ ...+-+|+
T Consensus 586 ---~l~g-~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 ---KLIG-SPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HhcC-CCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1111 1111 111122 333444444 58999999888777788887777643 13455777
Q ss_pred ecCCh
Q 043083 295 TTRNE 299 (468)
Q Consensus 295 TtR~~ 299 (468)
||...
T Consensus 658 Tsn~g 662 (821)
T CHL00095 658 TSNLG 662 (821)
T ss_pred eCCcc
Confidence 77653
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0016 Score=69.23 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=74.2
Q ss_pred ceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.++|-++.++.+...+..... ..+.....+.++|++|+|||+||+.+... ... ..+.++++...+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc----
Confidence 478888888888877753211 01223567899999999999999988873 221 233444443221111
Q ss_pred HHHhhccCCCChhhHHHHHHHHHHHhC-CCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecC
Q 043083 231 IIEGLDESASSLSEFQSLMSHIHRSIE-GKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTR 297 (468)
Q Consensus 231 i~~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 297 (468)
+ ..+-+.++.....+ ....+.+.++ ....+|+||++.......++.|...+..+. ..+-||+||.
T Consensus 530 ~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 V-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred H-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 1 11211111100000 0112223332 345699999998887777777777765331 2344777775
No 174
>PRK07261 topology modulation protein; Provisional
Probab=97.35 E-value=0.00047 Score=59.72 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=24.1
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcc-cccCceEE
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVK-RNFENVIW 215 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 215 (468)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999887632221 23444555
No 175
>PHA00729 NTP-binding motif containing protein
Probab=97.34 E-value=0.002 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999998873
No 176
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.0017 Score=59.50 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccc----cCceEEEEeCCCcCHHHHHHHHHHhhccCC------------CC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SS 241 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~ 241 (468)
..-.++.|+|.+|+|||+|+.+++........ -..++|++....++..++.. +++..+... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34679999999999999999888643222221 25689999888777654433 333322111 11
Q ss_pred hhhHHHHHHHHHHHhC-C-CcEEEEEeccC
Q 043083 242 LSEFQSLMSHIHRSIE-G-KKFFLVLDDVW 269 (468)
Q Consensus 242 ~~~~~~l~~~l~~~l~-~-k~~LlVlDdv~ 269 (468)
..+...+...+...+. . +.-|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2233344455555553 3 66799999984
No 177
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.33 E-value=0.0011 Score=60.29 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHh--------hccC-CCChhhHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEG--------LDES-ASSLSEFQSL 248 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~--------l~~~-~~~~~~~~~l 248 (468)
..-.++.|+|.+|+|||+||.+++... ...-..++|++.. .++...+. ++... +... .....+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 346799999999999999998887632 2233558899887 55554433 23222 1111 1112223333
Q ss_pred HHHHHHHhCCCcEEEEEecc
Q 043083 249 MSHIHRSIEGKKFFLVLDDV 268 (468)
Q Consensus 249 ~~~l~~~l~~k~~LlVlDdv 268 (468)
...+...+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 44444444456679999998
No 178
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0014 Score=58.18 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=72.5
Q ss_pred CcCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 150 IDEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 150 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
++-..++|-+...+.|++.-..-. .+...--|.++|..|+|||+|++++.+ .+....-. -|.+..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k--------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK--------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH---------
Confidence 344568999888888876543222 122345688999999999999999988 34333322 222222
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC---CCCcEEEEecCC
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG---LHGSKILVTTRN 298 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 298 (468)
.+..++..+.+.|+. ..+||.|..||+.-+ ....+..+.+.|..+ .+...++..|.+
T Consensus 122 ----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 112223333333332 478999999999543 334677788888643 233344444444
No 179
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.28 E-value=0.00019 Score=68.61 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=41.8
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|-++.++++++++.....+.....+++.|+|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997654322345688999999999999999998874
No 180
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.28 E-value=0.0002 Score=59.73 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=62.4
Q ss_pred eeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc-ccccCceEEEEeCCCcCHHHHHHHHHHh
Q 043083 156 CGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV-KRNFENVIWVCVSDTFEEIRVAKAIIEG 234 (468)
Q Consensus 156 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 234 (468)
||+-..++++.+.+.... .....|.|+|..|+||+++|+.++..... ...|..+ .+... + .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH-
Confidence 466666777766665433 13346899999999999999988874222 1222211 11110 0 11111
Q ss_pred hccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-CCCcEEEEecCCh
Q 043083 235 LDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 235 l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 299 (468)
. .+.--|+|+|+..-+......+...+... ....|+|.||...
T Consensus 67 -------------------~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 -------------------Q---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------H---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------H---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 14445789999877666666677777633 5678999999864
No 181
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.27 E-value=0.0015 Score=67.18 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=88.1
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc--ccccC-ceEEEEeCC---CcCHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV--KRNFE-NVIWVCVSD---TFEEIRV 227 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~F~-~~~wv~~~~---~~~~~~~ 227 (468)
+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.... ...|. ..-|+.+.. .++...+
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 6899999999988876533 2345789999999999999998763211 12232 122333221 1222222
Q ss_pred HHHHHHhhccCCC-ChhhHH--H-HHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-----------------
Q 043083 228 AKAIIEGLDESAS-SLSEFQ--S-LMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG----------------- 286 (468)
Q Consensus 228 ~~~i~~~l~~~~~-~~~~~~--~-l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------- 286 (468)
...++........ ...... . ........-+...=.|+||++...+....+.|...+...
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 1122111000000 000000 0 000000001233457899999877666666666554321
Q ss_pred -----------CCCcEEEEe-cCChh-HHhhh-CCCCeeeCCCCChHHHHHHHHHhhc
Q 043083 287 -----------LHGSKILVT-TRNES-VAHMM-GSTNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 287 -----------~~gs~ilvT-tR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
....++|.+ |++.. +...+ .....+.+.+|+.++..++++..+-
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 112366654 44332 11111 1135678999999999999998764
No 182
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00079 Score=62.17 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=50.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
+..-+.++|.+|+|||.||..+.+... +..+ .+.+++ ..+++.++....... .....|.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG--------RLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHh-h
Confidence 345689999999999999999998533 3233 355553 445555555544331 1112222222 2
Q ss_pred CcEEEEEeccCCCCccChh
Q 043083 259 KKFFLVLDDVWDGDYNKWE 277 (468)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~ 277 (468)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3348999999776555554
No 183
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.26 E-value=0.0027 Score=56.76 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeccC-CCCccChhhhHhhhcC--CCCCcEEEEecCChhHHhhhC
Q 043083 244 EFQSLMSHIHRSIEGKKFFLVLDDVW-DGDYNKWEPFFLYLKN--GLHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 244 ~~~~l~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 306 (468)
.-++-.-.+.+.|-.++-+|+.|+-- +-+...-..+...+.. ...|..||+.|.++.++..+.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444556777888888889999642 1222233344444442 234778999999999998543
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.25 E-value=0.0047 Score=66.42 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=93.3
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
..+.|.+..++.|.+.+..+-.. +-..++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 34667777776666655321110 1123455889999999999999999984 22222 22221 1
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC-------ccC-----hhhhHhhhcC--CCCCcE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD-------YNK-----WEPFFLYLKN--GLHGSK 291 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~~--~~~gs~ 291 (468)
++ +....+ .+...+...+...-...+++|+||+++.-. ... ...+...+.. ...+.-
T Consensus 522 ~l----~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 111100 111122222333334678999999985310 011 1223333332 223445
Q ss_pred EEEecCChhHHhh--h---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 292 ILVTTRNESVAHM--M---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 292 ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
||.||........ + .....+.++..+.++-.++|+.+.... ......+ ...+++.|.|+-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 6667765543221 1 225678888889999899987664321 1111222 346777887754
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.23 E-value=0.0023 Score=68.85 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=92.5
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|.+..++++.+.+...-.. +-...+-+.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 35789999888887776422110 0123456889999999999999999873 22222 222211
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc------c-----ChhhhHhhhcCC-CCCcEEE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY------N-----KWEPFFLYLKNG-LHGSKIL 293 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~il 293 (468)
.+. ... .......+...+.......+.+|+||+++.... . ....|...+... ..+..++
T Consensus 247 ~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 000 001122233333334456678999999854211 0 112233333321 2233344
Q ss_pred E-ecCChh-HHhhh----CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 294 V-TTRNES-VAHMM----GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 294 v-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
+ ||.... +...+ .....+.+...+.++-.++++...-... .... .....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Cccc----cCHHHHHHhCCCCC
Confidence 4 454432 11111 1134677888888888888886542111 1111 12456777887764
No 186
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.20 E-value=0.003 Score=63.81 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=81.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
.++-|.++|++|+|||.+|+.+.+. ..-.| +-+..+. +. .... + .+...+...+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l~----~~~v----G-ese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------LF----GGIV----G-ESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------hc----cccc----C-hHHHHHHHHHHHHHhc
Confidence 4567899999999999999999883 22221 1222111 11 0000 0 1112222222222245
Q ss_pred CcEEEEEeccCCCCc-------c-C----hhhhHhhhcCCCCCcEEEEecCChhHH-hhh----CCCCeeeCCCCChHHH
Q 043083 259 KKFFLVLDDVWDGDY-------N-K----WEPFFLYLKNGLHGSKILVTTRNESVA-HMM----GSTNIIFIEQLAEEEC 321 (468)
Q Consensus 259 k~~LlVlDdv~~~~~-------~-~----~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~ 321 (468)
.+++|+||+++.... . . ...+...+.....+.-||.||...... ..+ .....+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999964110 0 0 112233333333444566677654321 111 2256788888899999
Q ss_pred HHHHHHhhcCCCCC-CCccchHHHHHHHHHHcCCch
Q 043083 322 CSLLERLAFFGRSF-EDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 322 ~~Lf~~~a~~~~~~-~~~~~~~~~~~~I~~~~~G~P 356 (468)
.++|+.+....... ....+ ...+++.+.|+-
T Consensus 398 ~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 99998876432211 11112 346777776653
No 187
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.20 E-value=0.0024 Score=58.09 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhccc----ccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---------Chhh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKR----NFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---------SLSE 244 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 244 (468)
..-.++.|+|++|+|||+|+.+++....... .=..++|++....++...+. .+......... ...+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3467999999999999999988765321111 01457899888777765543 33332221100 1123
Q ss_pred HHHHHHHHHHHh----CCCcEEEEEeccC
Q 043083 245 FQSLMSHIHRSI----EGKKFFLVLDDVW 269 (468)
Q Consensus 245 ~~~l~~~l~~~l----~~k~~LlVlDdv~ 269 (468)
.+++...+.... ..+.-|+|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 444444444443 2345599999984
No 188
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.19 E-value=0.0015 Score=60.55 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=54.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc---cc-CceEEEEeCCCcCHHHHHHHHHHhhccCC------------CCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR---NF-ENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SSL 242 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 242 (468)
.-.+.=|+|++|+|||.|+.+++-...... .. ..++|++-...|+..++. +|++...... ...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 345788999999999999976654222221 12 348999999999887775 4555443221 112
Q ss_pred hhHHHHHHHHHHHh-CCCcEEEEEecc
Q 043083 243 SEFQSLMSHIHRSI-EGKKFFLVLDDV 268 (468)
Q Consensus 243 ~~~~~l~~~l~~~l-~~k~~LlVlDdv 268 (468)
.+...+...+...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 23333444444444 344559999988
No 189
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.0018 Score=55.25 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=28.8
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFE 223 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 223 (468)
++.|+|++|+|||+++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999887732 22234477887766543
No 190
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.18 E-value=0.002 Score=58.36 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=48.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhh--------ccC-CCChhhHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGL--------DES-ASSLSEFQSL 248 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l--------~~~-~~~~~~~~~l 248 (468)
..-.++.|.|.+|+|||+|+.+++.. ....-..++|++....+. .-+.+++... ... .....+....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 34678999999999999999888763 222223477887655543 2233333221 000 1111122223
Q ss_pred HHHHHHHhCCCcEEEEEeccC
Q 043083 249 MSHIHRSIEGKKFFLVLDDVW 269 (468)
Q Consensus 249 ~~~l~~~l~~k~~LlVlDdv~ 269 (468)
...+...+..+.-++|+|.+-
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 93 IQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHhcCCcEEEEechH
Confidence 334444444446688888873
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0064 Score=61.03 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CceeeccchHHHHHHHhhcCCCC------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.++=|.++.+.+|.+++..-..+ +-..++=|.+||++|+|||.||+.+.++. . +-++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch-----
Confidence 35667888888877776542210 11245678999999999999999999843 2 223333332
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc-C----------hhhhHhhhcC---C---CCC
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN-K----------WEPFFLYLKN---G---LHG 289 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-~----------~~~l~~~l~~---~---~~g 289 (468)
+|+....+ .+.+.+.+...+.-..-++++++|+++--... + ..+|...+.. . +.+
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 22222222 22344444455555678999999999542110 1 1233333321 1 122
Q ss_pred cEEEE-ecCChhHHhh---hCC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 290 SKILV-TTRNESVAHM---MGS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 290 s~ilv-TtR~~~v~~~---~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
.-||- |+|...+-.. .+. .+.|.|.--+...-.++++..+-+-.- ...-+ ..+|++.+-|+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFD----FKQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcC----HHHHHhcCCCc
Confidence 22332 4444433222 222 566777777777777777766533221 11222 34566666553
No 192
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0044 Score=59.42 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=48.1
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HHhhh-CCCCeeeCCCCChHHHHHHHHHh
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VAHMM-GSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
+++-++|+|++...+...-+.+...+.....++.+|++|.+.. +...+ +....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445667799988777677777777765445666777777654 33221 22457889999999998888653
No 193
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0021 Score=58.56 Aligned_cols=126 Identities=20% Similarity=0.146 Sum_probs=74.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-----CcCHHHHHHHHHHhhccCCC-------ChhhHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-----TFEEIRVAKAIIEGLDESAS-------SLSEFQ 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 246 (468)
...+++|+|.+|+|||||++.+.. ....-.+.++..-.+ .....+...++++.++.... ..+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 345899999999999999999986 333333444443221 12233445566666654321 112222
Q ss_pred HHHHHHHHHhCCCcEEEEEeccCCCCcc-ChhhhHhhhc--CCCCCcEEEEecCChhHHhhhCC
Q 043083 247 SLMSHIHRSIEGKKFFLVLDDVWDGDYN-KWEPFFLYLK--NGLHGSKILVTTRNESVAHMMGS 307 (468)
Q Consensus 247 ~l~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~ 307 (468)
.-.-.+.+.|.-++-|+|.|..-..-.. .-.++...+. ....|...|..|.+-.+...++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2233567778889999999987443211 1233344433 22346678888888888776554
No 194
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.17 E-value=0.0013 Score=61.98 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=73.6
Q ss_pred eccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC-hhcccccCceEE----EEeCCCc---------
Q 043083 157 GRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN-DEVKRNFENVIW----VCVSDTF--------- 222 (468)
Q Consensus 157 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~w----v~~~~~~--------- 222 (468)
+|..+-.--+++|+.+ ....|.+.|.+|.|||.||-+..-. ...++.|..++- +.++++.
T Consensus 228 prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 3555555556777643 5789999999999999999554322 223444543221 2233321
Q ss_pred CHHHHHHHHHHhhccC----CCChhhHHHHHHH------HHHHhCCC---cEEEEEeccCCCCccChhhhHhhhcCCCCC
Q 043083 223 EEIRVAKAIIEGLDES----ASSLSEFQSLMSH------IHRSIEGK---KFFLVLDDVWDGDYNKWEPFFLYLKNGLHG 289 (468)
Q Consensus 223 ~~~~~~~~i~~~l~~~----~~~~~~~~~l~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 289 (468)
.+.-..+.|...+..- .+....++.+... -..+++++ +-+||+|...+-.. ..+...+...+.|
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G~G 378 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAGEG 378 (436)
T ss_pred hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhccCC
Confidence 1112233333333221 1111111111100 01234554 35999999977544 4566677778889
Q ss_pred cEEEEecCChhH
Q 043083 290 SKILVTTRNESV 301 (468)
Q Consensus 290 s~ilvTtR~~~v 301 (468)
|||++|.-..++
T Consensus 379 sKIVl~gd~aQi 390 (436)
T COG1875 379 SKIVLTGDPAQI 390 (436)
T ss_pred CEEEEcCCHHHc
Confidence 999998865543
No 195
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.16 E-value=0.0052 Score=52.71 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=71.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeC---------------------CCc---------------
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVS---------------------DTF--------------- 222 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---------------------~~~--------------- 222 (468)
.-..+.|+|++|.|||||.+.+|...+. -.+.+|+.-- +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 3458999999999999999999975332 2234444210 000
Q ss_pred ------CHHHHH---HHHHHhhccC------CCChhhHHHHHHHHHHHhCCCcEEEEEeccC-CCCc-cChhhhHhhhc-
Q 043083 223 ------EEIRVA---KAIIEGLDES------ASSLSEFQSLMSHIHRSIEGKKFFLVLDDVW-DGDY-NKWEPFFLYLK- 284 (468)
Q Consensus 223 ------~~~~~~---~~i~~~l~~~------~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~-~~~~-~~~~~l~~~l~- 284 (468)
...++- .+.++..+.. +...+.-++-.-.|.+.+-+++-+|+-|.-- +-++ ..|+- ...|.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHH
Confidence 111121 1222222221 1122334455556777888899999999542 1122 24544 33333
Q ss_pred CCCCCcEEEEecCChhHHhhhC
Q 043083 285 NGLHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 285 ~~~~gs~ilvTtR~~~v~~~~~ 306 (468)
-+..|..||++|.+..+...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 4556999999999998876654
No 196
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.16 E-value=0.0013 Score=67.21 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=60.1
Q ss_pred CCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 177 QQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 177 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
.+.-+++.++|++|.||||||.-++++. .| .++=+++|+.-+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 4567899999999999999999888742 23 2667888887777666666655543322 12
Q ss_pred --CCCcEEEEEeccCCCCccChhhhHhhhc
Q 043083 257 --EGKKFFLVLDDVWDGDYNKWEPFFLYLK 284 (468)
Q Consensus 257 --~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 284 (468)
.+++..||+|.++-......+.+.+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678889999997654334455555443
No 197
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.14 E-value=0.0045 Score=54.13 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE---eCCCcCHHHHHH------HHHHhhccCC------CChhh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC---VSDTFEEIRVAK------AIIEGLDESA------SSLSE 244 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~------~i~~~l~~~~------~~~~~ 244 (468)
-.+++|+|+.|+|||||.+.++... ....+.+++. +.. .+...... ++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4589999999999999999998732 2334444432 211 12212111 1344433221 11222
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-CC-CcEEEEecCChhHHh
Q 043083 245 FQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LH-GSKILVTTRNESVAH 303 (468)
Q Consensus 245 ~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 303 (468)
-+...-.+.+.+-..+-++++|+.-.. +......+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 233334456666678889999987432 223334454544422 12 567888888866543
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0018 Score=67.71 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=84.1
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc-ccc-----Cc-eEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK-RNF-----EN-VIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F-----~~-~~wv~~~~~~~~~ 225 (468)
..++||++|++++++.|..... +.+ .++|.+|+|||+++.-++. ++. +.- +. ++-..++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLG------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHH------
Confidence 3589999999999999987653 112 4679999999999866655 221 111 11 1111111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCC-----C----ccChhhhHhhhcCCCCCcEEEEe
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDG-----D----YNKWEPFFLYLKNGLHGSKILVT 295 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~-----~----~~~~~~l~~~l~~~~~gs~ilvT 295 (468)
.-+.+ ..-..+.++....+.+.+ +.++..|++|.++.- . ...-+.|...|..+. -..|=.|
T Consensus 236 -------~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGAT 306 (786)
T COG0542 236 -------SLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGAT 306 (786)
T ss_pred -------HHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEec
Confidence 11111 111223344333344444 345899999999751 0 112233444444432 2235555
Q ss_pred cCChhH------HhhhCCCCeeeCCCCChHHHHHHHHHh
Q 043083 296 TRNESV------AHMMGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 296 tR~~~v------~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
|-++-- +........+.+...+.+++..+++..
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 544321 011122567888999999998888754
No 199
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.00033 Score=56.85 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 200
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0037 Score=54.18 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=61.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC--CcCHHHHHHHHHHhhcc--CCCC----------hhhH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD--TFEEIRVAKAIIEGLDE--SASS----------LSEF 245 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 245 (468)
-.+++|+|+.|.|||||.+.++.-. ....+.+++.-.. ........ ..++. +... .+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998732 1223333332110 00011110 11110 0000 1111
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 246 QSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
+...-.+...+-.++-+++||+-... +......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22223355666677789999987542 222334444444432235678888888766543
No 201
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.11 E-value=0.0039 Score=52.77 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=62.5
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC---CcCHHHHHHHHHHhhcc-----C-----CCChh---h
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD---TFEEIRVAKAIIEGLDE-----S-----ASSLS---E 244 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~l~~-----~-----~~~~~---~ 244 (468)
..|-|++..|.||||+|....-. .....+. +.++..-. ......++..+ ..+.. . ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999655432 1222222 33332222 22333333332 01100 0 00111 1
Q ss_pred HHHHHHHHHHHhCCC-cEEEEEeccCCC---CccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 245 FQSLMSHIHRSIEGK-KFFLVLDDVWDG---DYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 245 ~~~l~~~l~~~l~~k-~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
.....+..++.+... -=|||||++-.. .....+.+...+.....+.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333344445444 449999998432 22355677777877777888999999864
No 202
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.09 E-value=0.0037 Score=54.56 Aligned_cols=118 Identities=17% Similarity=0.087 Sum_probs=60.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhcc--C-------------CCChhh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDE--S-------------ASSLSE 244 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~~ 244 (468)
-.+++|+|+.|+|||||++.+..... ...+.+++.-. +.......+-..++. + ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999886421 12223332211 111110011111100 0 011111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 245 FQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 245 ~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
-+...-.+.+.+-.++-+++||+.... +......+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 222333455666677788999987542 22223334444433223667888888876654
No 203
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.004 Score=59.34 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=55.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc----cccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC---------hhhH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK----RNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS---------LSEF 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 245 (468)
.-+++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.+ +++.++..... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 46788999999999999997765322221 1113589999999888887754 45555433210 1122
Q ss_pred HH---HHHHHHHHh-CCCcEEEEEeccC
Q 043083 246 QS---LMSHIHRSI-EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~---l~~~l~~~l-~~k~~LlVlDdv~ 269 (468)
++ +...+...+ ..+--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 22 333344344 3445589999884
No 204
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.05 E-value=0.0011 Score=58.86 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=58.3
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH-HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI-RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
.++.|+|+.|+||||++..+... ...+....++. +.++.... .-...++.+-.. ..+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 37899999999999999887763 22233333332 22221100 000011111000 111223455677777767
Q ss_pred cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 260 KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
+=+|++|++.+. +.+..+... ...|..++.|+...++..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 779999999533 233332222 234566888887765543
No 205
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.04 E-value=0.0011 Score=56.98 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=66.2
Q ss_pred eeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHh
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEG 234 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 234 (468)
++|....+.++++.+..... ...-|.|+|..|+||+.+|+.+++... ..-...+-|+++. .+...+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhcc
Confidence 36777778888777755442 224577999999999999999998311 1111233344443 2333333233221
Q ss_pred hccCCCCh-hhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC------C-----CCcEEEEecCCh
Q 043083 235 LDESASSL-SEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG------L-----HGSKILVTTRNE 299 (468)
Q Consensus 235 l~~~~~~~-~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTtR~~ 299 (468)
......+. ..... .+. ....=-|+||++.......-..|...+..+ . ...|||.||..+
T Consensus 74 ~~~~~~~~~~~~~G---~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG---LLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH---HHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC---cee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11110000 00001 111 123335789999876655555566666422 1 256888888764
No 206
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.04 E-value=0.00076 Score=58.26 Aligned_cols=90 Identities=19% Similarity=0.133 Sum_probs=50.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcc-cccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVK-RNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
..++.+.|+.|+|||.||+.+.+. .. +.....+-++.+.-...... ..++..+....+..... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~~v~~------------~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPGYVGA------------E 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTCHHHH------------H
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchH-Hhhhhhhhhcccceeec------------c
Confidence 467899999999999999988873 33 33334555555543331111 11111111111111000 0
Q ss_pred CcEEEEEeccCCCCc-----------cChhhhHhhhc
Q 043083 259 KKFFLVLDDVWDGDY-----------NKWEPFFLYLK 284 (468)
Q Consensus 259 k~~LlVlDdv~~~~~-----------~~~~~l~~~l~ 284 (468)
..-+|+||+++.... ..|..|...+.
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 111999999988777 66777777774
No 207
>PTZ00494 tuzin-like protein; Provisional
Probab=97.02 E-value=0.025 Score=55.17 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=102.3
Q ss_pred CCCcCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHH
Q 043083 148 SLIDEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 148 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 227 (468)
.+.....++.|+.|-.-+...|..... ..++++.+.|.-|+||++|.+.....+.+ ..++|.+... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 344556789999887777777755443 57899999999999999999887763222 3567777654 455
Q ss_pred HHHHHHhhccCCCCh-hh-HHHH---HHHHHHHhCCCcEEEEEeccCCCCc-cChhhhHhhhcCCCCCcEEEEecCChhH
Q 043083 228 AKAIIEGLDESASSL-SE-FQSL---MSHIHRSIEGKKFFLVLDDVWDGDY-NKWEPFFLYLKNGLHGSKILVTTRNESV 301 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~-~~-~~~l---~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v 301 (468)
++.|+..++.+..+. .| ++-+ ...-+....++.-+||+-=-.-.+. ..+++.. .|.....-|.|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 777888888764331 11 2222 2222223456666777643211110 1222221 23333445667765544443
Q ss_pred Hhh---hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 302 AHM---MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 302 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
... +.....|.+++++..+|.++..+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 221 1225678999999999999887653
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.02 E-value=0.0047 Score=63.96 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=74.4
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+++... ..-...+.+++..-. . ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~-~-~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALS-E-TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCC-H-HHHHH
Confidence 345799999999998887765432 234578999999999999999987421 111123444444321 1 22222
Q ss_pred HHHhhccCCCCh-hhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCC
Q 043083 231 IIEGLDESASSL-SEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRN 298 (468)
Q Consensus 231 i~~~l~~~~~~~-~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 298 (468)
. +.+..... ..... ...........=.|+||++..........|...+..+. ...+||.||..
T Consensus 266 ~---lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 E---LFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred H---HcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1 11111000 00000 00000011234468899998776666666777765321 13578888765
Q ss_pred h
Q 043083 299 E 299 (468)
Q Consensus 299 ~ 299 (468)
.
T Consensus 341 ~ 341 (534)
T TIGR01817 341 D 341 (534)
T ss_pred C
Confidence 4
No 209
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.01 E-value=0.0068 Score=52.22 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=61.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhc-cc--ccCc---eEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEV-KR--NFEN---VIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIH 253 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~---~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 253 (468)
-.+++|+|+.|+|||||++.+...... .. .++. +.++.-...+....+...+.-. .....+.-+...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 458999999999999999999874221 11 1111 2222111111111222222210 1122233333344555
Q ss_pred HHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 254 RSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
+.+-.++-++++|+--.. +......+...+... +..||++|.+.....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 666677788899987432 222333344444432 356888888766543
No 210
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.00 E-value=0.0034 Score=58.02 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=54.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHH---
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQ--- 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 246 (468)
.-..++|.|.+|+|||+|++.+++ .+..+|+ .++++-+++.. +..++...+...-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999998 4444453 46677777654 4455555554421111 11111111
Q ss_pred --HHHHHHHHHh--C-CCcEEEEEecc
Q 043083 247 --SLMSHIHRSI--E-GKKFFLVLDDV 268 (468)
Q Consensus 247 --~l~~~l~~~l--~-~k~~LlVlDdv 268 (468)
...-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344555 3 89999999999
No 211
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0037 Score=63.74 Aligned_cols=133 Identities=18% Similarity=0.093 Sum_probs=74.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
...-|.|.|+.|+|||+||+.+++... .+..-++.+++++.-. ..+.++. .+...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345789999999999999999998543 4454556677766521 1111111 1122334455
Q ss_pred CCCcEEEEEeccCC------CCccChhh----hHhhh----c-CCCCCc--EEEEecCChhHH-hhhC----CCCeeeCC
Q 043083 257 EGKKFFLVLDDVWD------GDYNKWEP----FFLYL----K-NGLHGS--KILVTTRNESVA-HMMG----STNIIFIE 314 (468)
Q Consensus 257 ~~k~~LlVlDdv~~------~~~~~~~~----l~~~l----~-~~~~gs--~ilvTtR~~~v~-~~~~----~~~~~~l~ 314 (468)
.-.+-+|||||++- .+...|.. +...+ . -...+. ++|.|.....-. ..+. ......|.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999999953 11122321 11112 1 112233 455555443221 1111 13456788
Q ss_pred CCChHHHHHHHHHhh
Q 043083 315 QLAEEECCSLLERLA 329 (468)
Q Consensus 315 ~L~~~e~~~Lf~~~a 329 (468)
.+...+-.++++...
T Consensus 572 ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF 586 (952)
T ss_pred CcchhHHHHHHHHHH
Confidence 888888887777653
No 212
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.99 E-value=0.0038 Score=57.14 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC------------------
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA------------------ 239 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 239 (468)
+...++.|+|.+|+|||+|+.++.... .+ +=..++|++..+. +..+...+ .+++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356799999999999999998886431 22 2235888888764 34444443 2222110
Q ss_pred --CChhhHHHHHHHHHHHhCC-CcEEEEEeccC
Q 043083 240 --SSLSEFQSLMSHIHRSIEG-KKFFLVLDDVW 269 (468)
Q Consensus 240 --~~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~ 269 (468)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 56689999884
No 213
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.99 E-value=0.0064 Score=50.98 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=58.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
-.+++|+|..|.|||||++.+..... ...+.+|+.-.. .+.... ..+.-+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999887422 223334332100 000000 0122222233455566667
Q ss_pred cEEEEEeccCC-CCccChhhhHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 260 KFFLVLDDVWD-GDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 260 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
+-++++|+.-. -+......+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 78899998743 2223344455555433 2468888887665543
No 214
>PRK13695 putative NTPase; Provisional
Probab=96.99 E-value=0.00088 Score=58.27 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0068 Score=58.68 Aligned_cols=104 Identities=11% Similarity=0.123 Sum_probs=52.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcC--HHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFE--EIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
.+++|+|+|++|+||||++..++.... ...+ .+..++... +. ..+-+....+.++.......+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt-~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCC-cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 458999999999999999988876322 2222 244444332 22 222233333333332211234445555454432
Q ss_pred CC-CcEEEEEeccCCCC--ccChhhhHhhhcC
Q 043083 257 EG-KKFFLVLDDVWDGD--YNKWEPFFLYLKN 285 (468)
Q Consensus 257 ~~-k~~LlVlDdv~~~~--~~~~~~l~~~l~~ 285 (468)
.. +.=++++|-.-... ......+...+..
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 21 23477888764322 1224444444443
No 216
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0008 Score=61.12 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=34.3
Q ss_pred ccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 158 RVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 158 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
|.+-+++|.+.+..... ..+.+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55667778877765432 46889999999999999999998873
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.004 Score=55.08 Aligned_cols=57 Identities=25% Similarity=0.223 Sum_probs=36.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDES 238 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 238 (468)
++++.++|+.|+||||.+..++.....+ -..+..++... .....+.++...+.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4689999999999999987666533322 22356666543 234455566666666643
No 218
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.0032 Score=54.05 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=63.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC--CcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD--TFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
-.+++|+|+.|+|||||.+.+... .....+.+++.-.. ..+...... ..++.. ...+.-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 358999999999999999999863 22334444443211 111111111 111111 112223333344556666
Q ss_pred CCcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChhHHh
Q 043083 258 GKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNESVAH 303 (468)
Q Consensus 258 ~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 303 (468)
.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888999987432 223334444555321 23667888888876443
No 219
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.94 E-value=0.0052 Score=53.34 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=61.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcCh---hcccc---cC--ceEEEEeCCCcCHHHHHHHHHHhhccCCC-------Chh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNND---EVKRN---FE--NVIWVCVSDTFEEIRVAKAIIEGLDESAS-------SLS 243 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~ 243 (468)
.-.+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.+..++.... ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34589999999999999999886321 11111 10 12232 11 344555543211 112
Q ss_pred hHHHHHHHHHHHhCCC--cEEEEEeccCCC-CccChhhhHhhhcC-CCCCcEEEEecCChhHHh
Q 043083 244 EFQSLMSHIHRSIEGK--KFFLVLDDVWDG-DYNKWEPFFLYLKN-GLHGSKILVTTRNESVAH 303 (468)
Q Consensus 244 ~~~~l~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 303 (468)
.-+...-.+.+.+-.+ +-+++||+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223333455555556 778888987432 22233444444432 124667888888877654
No 220
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.93 E-value=0.0037 Score=60.04 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=55.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc---c-ccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---------ChhhH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK---R-NFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---------SLSEF 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 245 (468)
.-.++-|+|++|+|||+|+.+++-..... . .-..++|++....|.+.++.+ +++.++.... ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 45788899999999999998775322221 1 123589999999999888755 4555544321 11222
Q ss_pred HH---HHHHHHHHh-CCCcEEEEEeccC
Q 043083 246 QS---LMSHIHRSI-EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~---l~~~l~~~l-~~k~~LlVlDdv~ 269 (468)
++ +...+...+ ..+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 32 333333334 3345589999883
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.93 E-value=0.0036 Score=60.27 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=68.0
Q ss_pred eeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH-HHH
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA-IIE 233 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~~ 233 (468)
++|....++++.+.+..... ...-|.|+|..|+||+++|+.+++...- .-...+-|++.... . ..+.. +.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~-~-~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS-E-NLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC-h-HHHHHHHhc
Confidence 36777777777766654432 2345899999999999999998863211 11123334444321 1 22222 211
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
...+....... .....+ -....=.|+||++..........|...+..+. ...+||.||...
T Consensus 73 ~~~g~~~ga~~--~~~G~~---~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~ 144 (329)
T TIGR02974 73 HEAGAFTGAQK--RHQGRF---ERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNAD 144 (329)
T ss_pred cccccccCccc--ccCCch---hhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhh
Confidence 00000000000 000000 11234458999997766555566666664321 235788888543
No 222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.006 Score=52.97 Aligned_cols=104 Identities=16% Similarity=0.032 Sum_probs=57.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE------eCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC------VSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIH 253 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 253 (468)
-.+++|+|+.|+|||||.+.+..-. ....+.+++. +.+... .+.-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 4589999999999999999988632 1222333221 111111 222223333455
Q ss_pred HHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC--CCCcEEEEecCChhHHhh
Q 043083 254 RSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG--LHGSKILVTTRNESVAHM 304 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 304 (468)
+.+-.++-+++||+--.. +......+...+... ..+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 566667788999987432 222233344444321 122567788877665443
No 223
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.89 E-value=0.0028 Score=60.20 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC-----CChhhHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA-----SSLSEFQSLMSHI 252 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 252 (468)
+.-+++-|+|++|+||||||.++... ....-..++|+...+.++.. .+++++... ....+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35679999999999999999887763 22233447888877765553 233333221 1122345555555
Q ss_pred HHHhC-CCcEEEEEeccC
Q 043083 253 HRSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 253 ~~~l~-~k~~LlVlDdv~ 269 (468)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999884
No 224
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0032 Score=58.34 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=49.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc--cccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK--RNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
..++|.++|++|.|||+|++.+++...++ +.|....-+.++.. .++.+-... ....+..+.+.+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHH
Confidence 36899999999999999999999875443 44544444444332 222221111 1223455566677777
Q ss_pred CCCc--EEEEEeccC
Q 043083 257 EGKK--FFLVLDDVW 269 (468)
Q Consensus 257 ~~k~--~LlVlDdv~ 269 (468)
.++. +++.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 6554 456688884
No 225
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.84 E-value=0.003 Score=59.97 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=53.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC-----CChhhHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA-----SSLSEFQSLMSHI 252 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 252 (468)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .+..++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35678899999999999999887753 22333458899887766653 223333211 0122345555555
Q ss_pred HHHhC-CCcEEEEEeccC
Q 043083 253 HRSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 253 ~~~l~-~k~~LlVlDdv~ 269 (468)
...++ +..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55553 456699999874
No 226
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.83 E-value=0.0041 Score=58.51 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=44.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc-cccCceEEEEeCCCc-CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK-RNFENVIWVCVSDTF-EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 256 (468)
..+++.|+|+.|+||||++..++.....+ ..+ .+..++..... .....+..-.+.++.......+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 46799999999999999998877633222 122 34555543311 122222222333332222222334444444433
Q ss_pred CCCcEEEEEecc
Q 043083 257 EGKKFFLVLDDV 268 (468)
Q Consensus 257 ~~k~~LlVlDdv 268 (468)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 32 346777753
No 227
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.82 E-value=0.0058 Score=58.39 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcc---c-ccCceEEEEeCCCcCHHHHHHHHHHhhccCCC------------C
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVK---R-NFENVIWVCVSDTFEEIRVAKAIIEGLDESAS------------S 241 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~ 241 (468)
....++.|+|.+|+|||+|+..++...... . .-..++|++....++..++ .++++.++.... .
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 356789999999999999998876422211 1 1124799998887777764 334444433211 1
Q ss_pred hhhHHHHHHHHHHHhC-CCcEEEEEeccC
Q 043083 242 LSEFQSLMSHIHRSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 242 ~~~~~~l~~~l~~~l~-~k~~LlVlDdv~ 269 (468)
......+...+...+. .+--|||+|.+-
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 1112223333333343 455689999873
No 228
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.78 E-value=0.0037 Score=60.21 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=72.8
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|+...++++.+.+..... ...-|.|+|..|+||+++|+.++... ...-...+.+++... +...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 589999999888887765442 23468899999999999999888521 111112344555542 22222222221
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
.-......... .....+ .....=.|+||++..........|...+..+. ...+||.||...
T Consensus 80 ~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11000000000 000111 11223357899998766666666777664321 135888887654
No 229
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.78 E-value=0.0063 Score=58.56 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcc---c-ccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---------ChhhH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVK---R-NFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---------SLSEF 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 245 (468)
...++-|+|.+|+|||+|+..++-..... . .-..++|++....|++.++. +|++.++.... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 46788899999999999997766422211 1 11258999999998887764 45555543321 01122
Q ss_pred HHH---HHHHHHHh-CCCcEEEEEeccC
Q 043083 246 QSL---MSHIHRSI-EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~l---~~~l~~~l-~~k~~LlVlDdv~ 269 (468)
+.+ ...+...+ ..+.-|||+|.+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 232 33332333 3455689999883
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.77 E-value=0.004 Score=59.69 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC-----CChhhHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA-----SSLSEFQSLMSHI 252 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 252 (468)
+.-+++-|+|++|+||||||.+++.. ....-..++|+.....++.. .++.++... ....+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35678999999999999999887753 22333458899888777653 233333221 1122345555555
Q ss_pred HHHhC-CCcEEEEEeccC
Q 043083 253 HRSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 253 ~~~l~-~k~~LlVlDdv~ 269 (468)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456699999984
No 231
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.013 Score=59.48 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++-|.++|++|+|||++|+.+.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh
Confidence 45778999999999999999999983
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.01 Score=51.43 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=61.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhcc--CCC----C--------hhhH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDE--SAS----S--------LSEF 245 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~----~--------~~~~ 245 (468)
-.+++|+|+.|+|||||.+.+.... ....+.+++.-....+.. ..+...+.. +.. . .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999988742 122333333211000000 000011100 000 0 1112
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChhHHhh
Q 043083 246 QSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNESVAHM 304 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 304 (468)
+...-.+...+-.++-++++|+.-.. +......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22233466667778889999987442 222333444444321 236678888888765543
No 233
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.74 E-value=0.0071 Score=52.51 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=59.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC--CcCHHHHHHHHHHhhccCCCC----------hhhHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD--TFEEIRVAKAIIEGLDESASS----------LSEFQS 247 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~----------~~~~~~ 247 (468)
-.+++|+|+.|+|||||.+.+.... ....+.+++.-.. ..........+. .+ .+... .+.-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~-~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YL-PQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EE-CCCCccccCcHHHHCcCHHHH
Confidence 3489999999999999999988632 1223333322110 001111111100 00 00000 111222
Q ss_pred HHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC-CCCCcEEEEecCChhHHh
Q 043083 248 LMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN-GLHGSKILVTTRNESVAH 303 (468)
Q Consensus 248 l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 303 (468)
..-.+.+.+-.++-+++||+.... +......+...+.. ...|..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333455556667778999987542 22223334444432 123667888888876654
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.72 E-value=0.0065 Score=64.89 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=74.1
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|+...++.+.+.+..... ....|.|+|..|+|||++|+.+++... +.. ...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccCC-hhHhhhhhc
Confidence 3689999988888776654332 334689999999999999999987421 111 124444444321 111111111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
........... ......+ -....=.|+||++..........|...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111000000 0001111 11233468999998766655666777664321 345888888654
No 235
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.71 E-value=0.0082 Score=53.20 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=44.0
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccC---ceEEEEeCCCcCHHHHHHHHHHhh----ccCCCChhhHHHHHHHHHH
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFE---NVIWVCVSDTFEEIRVAKAIIEGL----DESASSLSEFQSLMSHIHR 254 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~l~~~l~~ 254 (468)
+|+|.|++|+||||+|+.+...... .... ....++............. -... .-..+..-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6899999999999999988873211 1222 1333333332222222221 1111 1112345667777888877
Q ss_pred HhCCCcEEE
Q 043083 255 SIEGKKFFL 263 (468)
Q Consensus 255 ~l~~k~~Ll 263 (468)
+..++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767776544
No 236
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.69 E-value=0.01 Score=60.49 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=42.3
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC 217 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (468)
+++--.+-++++..||..... +....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 455556678888888875432 2234679999999999999999998874 2455556654
No 237
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.68 E-value=0.00099 Score=67.15 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=39.5
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+++|.++.++++++.|..........-+++.++|++|+|||+||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998433222233557999999999999999998886
No 238
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.68 E-value=0.049 Score=45.47 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHhhhchhhhh
Q 043083 2 VDAIVSSLLEQLISVAADEVKQQVRLLTGVREEVKKLTSNLQAIRAVLEDAEQRQMQQDKAVTFWLDQLKDASYDMEDML 81 (468)
Q Consensus 2 a~~~vs~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~~yd~eD~l 81 (468)
|+.+.+++++.+++.+...+.+..+.....+.-+++|...++.|..++++.+.....-+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 56677778888888887778777777888888999999999999999999988655445444667889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccccchhHHHHHHHHHHHHHHHH
Q 043083 82 EEWTTARLKLQIEGVDDDNALALAPHKKKIREINGKLDDIA 122 (468)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~ 122 (468)
+.|..-. ++ |.+...+.+++|+++.+.+....
T Consensus 83 ~k~sk~~-r~--------n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 83 EKCSKVR-RW--------NLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHhcccc-HH--------HHHhhHhHHHHHHHHHHHHHHHh
Confidence 8874211 11 11111155666666666655443
No 239
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.68 E-value=0.0019 Score=55.62 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=42.5
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC---hhhHHHHHHHHHHHhCCC
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS---LSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~l~~~l~~k 259 (468)
+.|.|.+|+|||++|.++... ....++++.-...++. ++...|.......... ......+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999888752 2234667766665544 2333333322112111 11122333333221 2 3
Q ss_pred cEEEEEecc
Q 043083 260 KFFLVLDDV 268 (468)
Q Consensus 260 ~~LlVlDdv 268 (468)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 240
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.66 E-value=0.014 Score=53.58 Aligned_cols=142 Identities=19% Similarity=0.248 Sum_probs=70.6
Q ss_pred EEEEeecCCcchhHHHHHHhcChhccccc---------C-ceEEEEeCCCcC-HHHHHHHHHHhhccCC-----------
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNF---------E-NVIWVCVSDTFE-EIRVAKAIIEGLDESA----------- 239 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---------~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~----------- 239 (468)
+..|+|++|+|||+|+..++-.......| . .+++++...+.+ ..+-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56799999999999998776531111111 1 255666555332 3333344444332100
Q ss_pred -CC----h---hhHHHHHHHHHHHh-CCCcEEEEEeccCC------CCccChhhhHhhhcC--CCCCcEEEEecCChhHH
Q 043083 240 -SS----L---SEFQSLMSHIHRSI-EGKKFFLVLDDVWD------GDYNKWEPFFLYLKN--GLHGSKILVTTRNESVA 302 (468)
Q Consensus 240 -~~----~---~~~~~l~~~l~~~l-~~k~~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~ 302 (468)
.. . .........+.+.+ ..+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 0 00112222333322 45677999996632 122233444444432 23467788887764221
Q ss_pred h--------h------h-CCCCeeeCCCCChHHHHH
Q 043083 303 H--------M------M-GSTNIIFIEQLAEEECCS 323 (468)
Q Consensus 303 ~--------~------~-~~~~~~~l~~L~~~e~~~ 323 (468)
. . . .....+.+.+++++++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 0 113456777888887766
No 241
>PHA02244 ATPase-like protein
Probab=96.65 E-value=0.0066 Score=58.30 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-|.|+|++|+|||+||+.++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999987
No 242
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.65 E-value=0.046 Score=51.90 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=39.3
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 227 (468)
.++=..+....++.++.. .+.|.|.|++|+||||+|+.++. ..... .+.|+++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 344444556667777743 23599999999999999999987 33322 335555555554444
No 243
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.64 E-value=0.0023 Score=56.82 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=53.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh---
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI--- 256 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l--- 256 (468)
-+++.|.|++|+||||++..+...... . ...+.+......-...+... .+.. ..++..+.......-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNKAAKELREK----TGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHHHHHHHHHh----hCcc---hhhHHHHHhcCCcccccc
Confidence 357889999999999999888763222 2 12333333332222222222 2111 111111100000000
Q ss_pred ---CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH
Q 043083 257 ---EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV 301 (468)
Q Consensus 257 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 301 (468)
..+.-+||+|+..-.+...+..+....+. .|+++|+.--..+.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12345999999976655555555555544 47788887765544
No 244
>PTZ00035 Rad51 protein; Provisional
Probab=96.63 E-value=0.016 Score=55.91 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcc---c-ccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---------Chhh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVK---R-NFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---------SLSE 244 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 244 (468)
....++.|+|.+|+|||+|+..++-..... . .=..++|++....+++.++ .++++.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 356789999999999999998876432211 1 1124679988877777664 344444433211 1112
Q ss_pred HHHHHH---HHHHHh-CCCcEEEEEeccC
Q 043083 245 FQSLMS---HIHRSI-EGKKFFLVLDDVW 269 (468)
Q Consensus 245 ~~~l~~---~l~~~l-~~k~~LlVlDdv~ 269 (468)
.+++.. .+...+ ..+--|||+|.+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 223222 233333 3455699999884
No 245
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.63 E-value=0.016 Score=52.93 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC--CCCCcEEEEecCChhHHhhhCC
Q 043083 246 QSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN--GLHGSKILVTTRNESVAHMMGS 307 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~ 307 (468)
+.-.-.+...|..+.=+|+||.--+. |...--.+...+.. ...|..||+++.+.+.|...+.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 33444567777788888999976331 11111223333331 2347779999999988766544
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.63 E-value=0.0064 Score=53.39 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=26.1
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD 220 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 220 (468)
+.|.|++|+|||+|+.++..... + .=..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC
Confidence 67899999999999988766322 1 123477887765
No 247
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.63 E-value=0.0041 Score=55.93 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999988774
No 248
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.011 Score=57.95 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...++.++|++|+||||++..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988875
No 249
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.015 Score=53.96 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=59.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH---hhccC-CCChhhHHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE---GLDES-ASSLSEFQSLMSHIH 253 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~---~l~~~-~~~~~~~~~l~~~l~ 253 (468)
+.-+++=|+|+.|+||||+|.+++-. .+..-..++|++.-+.+++..+..--.. .+... .........+...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45678889999999999999776652 3333347899999998988776433222 22222 223334444555555
Q ss_pred HHhCCCcEEEEEeccC
Q 043083 254 RSIEGKKFFLVLDDVW 269 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~ 269 (468)
.....+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 5554556799999984
No 250
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0075 Score=54.86 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=67.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChh-----cc------ccc---CceEEEEeCC----C--cCH---------------
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDE-----VK------RNF---ENVIWVCVSD----T--FEE--------------- 224 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~~~----~--~~~--------------- 224 (468)
..+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||+=.. . .++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999987211 00 001 2355554211 1 111
Q ss_pred -------HHHHHHHHHhhccCCC------ChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC-CCCC
Q 043083 225 -------IRVAKAIIEGLDESAS------SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN-GLHG 289 (468)
Q Consensus 225 -------~~~~~~i~~~l~~~~~------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~g 289 (468)
.+...+.++.++...- ..+.-+.-.-.|.+.|..++=|++||.--.. |...-..+...+.. ...|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 1333344444443211 1222233334567788899999999975331 11222233333331 1128
Q ss_pred cEEEEecCChhHHh
Q 043083 290 SKILVTTRNESVAH 303 (468)
Q Consensus 290 s~ilvTtR~~~v~~ 303 (468)
+.||++|.+-....
T Consensus 190 ~tIl~vtHDL~~v~ 203 (254)
T COG1121 190 KTVLMVTHDLGLVM 203 (254)
T ss_pred CEEEEEeCCcHHhH
Confidence 88999999865544
No 251
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.021 Score=57.53 Aligned_cols=132 Identities=16% Similarity=0.250 Sum_probs=76.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
.+.=|.++|++|+|||-||++|+|. ..-+| +++..+ +++..- ++ .+...+....++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkY---VG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKY---VG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcC
Confidence 3556889999999999999999994 44444 333332 111110 01 1112233333344356
Q ss_pred CcEEEEEeccCCC-----CccCh------hhhHhhhcC--CCCCcEEEEecCChhHHhh--hCC---CCeeeCCCCChHH
Q 043083 259 KKFFLVLDDVWDG-----DYNKW------EPFFLYLKN--GLHGSKILVTTRNESVAHM--MGS---TNIIFIEQLAEEE 320 (468)
Q Consensus 259 k~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~ilvTtR~~~v~~~--~~~---~~~~~l~~L~~~e 320 (468)
-+|+|.||.++.. +...| ++|+.-+.. ...|.-||-.|..+++... +.+ ...+-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998541 11122 223333321 2346667777766655321 222 4566777778888
Q ss_pred HHHHHHHhhc
Q 043083 321 CCSLLERLAF 330 (468)
Q Consensus 321 ~~~Lf~~~a~ 330 (468)
-.++++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8999988764
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.0064 Score=58.99 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=48.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
..++.++|+.|+||||++..+......+.....+..++... .....+.+....+.++.......+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 46899999999999999988876322221123355555332 2233444444455554432222222233333333 334
Q ss_pred CcEEEEEeccCC
Q 043083 259 KKFFLVLDDVWD 270 (468)
Q Consensus 259 k~~LlVlDdv~~ 270 (468)
+ -++++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 5566898843
No 253
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.019 Score=51.38 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=34.1
Q ss_pred HHHHHHhCCCcEEEEEeccCCCC-ccChhhhHhhhc--CCCCCcEEEEecCChhHHhhhCC
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDGD-YNKWEPFFLYLK--NGLHGSKILVTTRNESVAHMMGS 307 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~ 307 (468)
=.|.+.|.-++-+||+|..-..- ...-..+...|. ....+-.+|+.|.+-.+...++.
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 35667778888899999874321 111122333332 22345668888888777655543
No 254
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.05 Score=53.10 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=78.3
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHh--CC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSI--EG 258 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l--~~ 258 (468)
|=-.++||+|.|||+++.++++.. .|+ ++=+.++...+-.+ |+++| ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd-IydLeLt~v~~n~d-------------------------Lr~LL~~t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD-IYDLELTEVKLDSD-------------------------LRHLLLATP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc-eEEeeeccccCcHH-------------------------HHHHHHhCC
Confidence 446799999999999999999842 232 12122222111111 22333 24
Q ss_pred CcEEEEEeccCCC------------------CccChhhhHhhhcC--CCC-CcE-EEEecCChhHHh--hhCC---CCee
Q 043083 259 KKFFLVLDDVWDG------------------DYNKWEPFFLYLKN--GLH-GSK-ILVTTRNESVAH--MMGS---TNII 311 (468)
Q Consensus 259 k~~LlVlDdv~~~------------------~~~~~~~l~~~l~~--~~~-gs~-ilvTtR~~~v~~--~~~~---~~~~ 311 (468)
.+-+||+.|++.. ....+..|+.++.. +.. +-| |+.||...+-.. .+.+ ...+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 5677888887431 01223345555531 222 224 455665543321 1222 3456
Q ss_pred eCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 312 FIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 312 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.+.-=+.+....|+..+..... ...++.+|.+...|.-+.=..++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 7888888888999988864322 12344555555555444434444433
No 255
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.56 E-value=0.0081 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|.|.+|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 256
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.56 E-value=0.014 Score=61.45 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=69.8
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
+-|.|+|++|+|||++|+.+... ....| +.++.+. +.. + ... .....+...+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~~-~---~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FVE-M---FVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hHH-h---hhc-----ccHHHHHHHHHHHHhcCC
Confidence 34899999999999999999873 22222 2222221 110 0 000 011122223333334578
Q ss_pred EEEEEeccCCCC----------ccChhhhHhh----hcC--CCCCcEEEEecCChhHHhh--h---CCCCeeeCCCCChH
Q 043083 261 FFLVLDDVWDGD----------YNKWEPFFLY----LKN--GLHGSKILVTTRNESVAHM--M---GSTNIIFIEQLAEE 319 (468)
Q Consensus 261 ~LlVlDdv~~~~----------~~~~~~l~~~----l~~--~~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~ 319 (468)
++|+||+++.-. .......... +.. ...+.-+|.||...+.... . .....+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986521 0112222222 221 2234556667776554221 1 12467788888888
Q ss_pred HHHHHHHHhhc
Q 043083 320 ECCSLLERLAF 330 (468)
Q Consensus 320 e~~~Lf~~~a~ 330 (468)
+-.++++.+..
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888887763
No 257
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.54 E-value=0.007 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999998886
No 258
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.54 E-value=0.014 Score=56.15 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=55.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccc----cCceEEEEeCCCcCHHHHHHHHHHhhccCCC------------Ch
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIWVCVSDTFEEIRVAKAIIEGLDESAS------------SL 242 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 242 (468)
...++-|+|++|+|||+|+.+++........ =..++|++....+++.++.+. ++.++.... ..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhhhccEEEEeCCCH
Confidence 4678899999999999999877753222111 136899999988887776543 343332111 11
Q ss_pred hhHHHHHHHHHHHhCC--CcEEEEEeccC
Q 043083 243 SEFQSLMSHIHRSIEG--KKFFLVLDDVW 269 (468)
Q Consensus 243 ~~~~~l~~~l~~~l~~--k~~LlVlDdv~ 269 (468)
.....+...+...+.. +--|||+|.+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 1122334455555543 34489999873
No 259
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.035 Score=58.09 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=99.4
Q ss_pred ceeeccc---hHHHHHHHhhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHH
Q 043083 154 EVCGRVD---EKNELLSKLLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 154 ~~vGR~~---e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 227 (468)
++.|-++ |++++++.|..+... +-.-++=+.++|++|+|||-||++++-... +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH------
Confidence 4667654 556667777544311 123467789999999999999999998432 334455442
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc---------------cChhhhHhhhcCC--CCCc
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY---------------NKWEPFFLYLKNG--LHGS 290 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~--~~gs 290 (468)
+.++.+.... ... +.+.....=...++++.+|+++.... ..++++..-+... ..+-
T Consensus 379 --EFvE~~~g~~--asr---vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVGVG--ASR---VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhcccc--hHH---HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 1112221111 111 11112222245688999998854211 1122333323222 2233
Q ss_pred EEEEecCChhHHhh--hC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 291 KILVTTRNESVAHM--MG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 291 ~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
-+|-+|...++... +. ....+.+..-+.....++|.-++-... ...+..++.+ |+..+-|++=|..
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHHH
Confidence 34445555544321 12 256788888888889999998874322 2234445555 8888888775543
No 260
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0057 Score=54.17 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=44.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHh--hccCCCChhhHHHHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEG--LDESASSLSEFQSLMSHIHRS 255 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~l~~~ 255 (468)
..+.+|+|.|.+|+||||+|+.++. .....+ +.-++...-+. ..-....... ..-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999987 333332 12222111111 0000001111 111233456677778888888
Q ss_pred hCCCc
Q 043083 256 IEGKK 260 (468)
Q Consensus 256 l~~k~ 260 (468)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 261
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.51 E-value=0.014 Score=55.82 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=39.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc----ccCceEEEEeCCCcCHHHHHHHHHHhh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR----NFENVIWVCVSDTFEEIRVAKAIIEGL 235 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l 235 (468)
...++-|+|++|+|||+|+.+++....... .=..++|++....|+..++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 467889999999999999988765322211 012689999988888776543 34433
No 262
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.50 E-value=0.0084 Score=61.59 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=75.9
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 45689999999998888866542 345789999999999999999987421 1111244555554322 1111111
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
.-........... .....+. ....=.|+||++..........|...+..+. ...+||.||...
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111100000000 0000010 1122346899998776666667777765432 245888888654
No 263
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.49 E-value=0.013 Score=54.98 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhccccc-C-ceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF-E-NVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS 255 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 255 (468)
..+.+|+|.|..|+||||+|+.+.. ...... . .+..++...-..........--.-....+..-+...+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4678999999999999999987654 121111 1 24444443322222222211000001123445566666666666
Q ss_pred hCCC
Q 043083 256 IEGK 259 (468)
Q Consensus 256 l~~k 259 (468)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 264
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0055 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999988876
No 265
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.028 Score=57.62 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+.+.++|++|.|||.||+.+++ ....+|- .+... .+ +... -......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~----~l----~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS----EL----LSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH----HH----hccc-----cchHHHHHHHHHHHHHc
Confidence 3566899999999999999999998 3333332 22211 11 1100 01122233334444446
Q ss_pred CCcEEEEEeccCCC-----Cc------cChhhhHhhhcCC--CCCcEEEEecCChhHHhh--h---CCCCeeeCCCCChH
Q 043083 258 GKKFFLVLDDVWDG-----DY------NKWEPFFLYLKNG--LHGSKILVTTRNESVAHM--M---GSTNIIFIEQLAEE 319 (468)
Q Consensus 258 ~k~~LlVlDdv~~~-----~~------~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~ 319 (468)
..++.|.+|+++.- .. .....+...+... ..+..||-||..+..... . .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999998541 10 1223344444322 233345555555433221 1 22567889999999
Q ss_pred HHHHHHHHhhc
Q 043083 320 ECCSLLERLAF 330 (468)
Q Consensus 320 e~~~Lf~~~a~ 330 (468)
+..+.|+.+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 266
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.021 Score=56.95 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=45.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
.+++.++|++|+||||++..+.........-..+..++....- .....+....+.++.......+..++...+... .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4589999999999999997766532201222235556543311 111222222333332222222334444444432 2
Q ss_pred CcEEEEEeccCC
Q 043083 259 KKFFLVLDDVWD 270 (468)
Q Consensus 259 k~~LlVlDdv~~ 270 (468)
..=+|++|..-.
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 345788897643
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.02 Score=56.06 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=50.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc--ccCceEEEEeCCC-cCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR--NFENVIWVCVSDT-FEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 255 (468)
.++++.++|+.|+||||.+..++....... +-..+..+++... ......+....+.++.......+...+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999987775322211 1123444554431 1222334455555554322233444555445443
Q ss_pred hCCCcEEEEEeccCCC
Q 043083 256 IEGKKFFLVLDDVWDG 271 (468)
Q Consensus 256 l~~k~~LlVlDdv~~~ 271 (468)
.+.-++++|-....
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568889988543
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=96.44 E-value=0.028 Score=54.02 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=46.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHHHhhccCCC---ChhhHHH-HHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAIIEGLDESAS---SLSEFQS-LMSHI 252 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~-l~~~l 252 (468)
.+.++.++|++|+||||++..++.... ...+. ++.+. .+.+ .....+......++.... ...+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 478999999999999998877775321 22232 33343 2222 223344455555553211 1112222 22333
Q ss_pred HHHhCCCcEEEEEeccCCC
Q 043083 253 HRSIEGKKFFLVLDDVWDG 271 (468)
Q Consensus 253 ~~~l~~k~~LlVlDdv~~~ 271 (468)
........-++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3222222238889987543
No 269
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.44 E-value=0.019 Score=56.95 Aligned_cols=24 Identities=38% Similarity=0.322 Sum_probs=20.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.++.++|.+|+||||++..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999866654
No 270
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.44 E-value=0.025 Score=49.77 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=69.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeC-------------------CCc-----------------
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVS-------------------DTF----------------- 222 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-------------------~~~----------------- 222 (468)
.-.+++|+|++|+|||||.+.+..-+. .=.+.+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 345899999999999999998875322 22334444321 111
Q ss_pred --------CHHHHHHHHHHhhccCC------CChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhc-CC
Q 043083 223 --------EEIRVAKAIIEGLDESA------SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLK-NG 286 (468)
Q Consensus 223 --------~~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~ 286 (468)
...+...++++.++... ...+.-++-.-.|.+.|.=++=++.||..-+. +++-...+...+. -.
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 11222223333333221 12233344455677888888889999998543 2222233333332 12
Q ss_pred CCCcEEEEecCChhHHhhhC
Q 043083 287 LHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 287 ~~gs~ilvTtR~~~v~~~~~ 306 (468)
..|...|+.|..-..|..+.
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 34667777777766666544
No 271
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0072 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.43 E-value=0.021 Score=49.46 Aligned_cols=21 Identities=52% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 273
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.013 Score=51.06 Aligned_cols=117 Identities=19% Similarity=0.112 Sum_probs=59.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe---CCCc-CHHHHHHHHHHhhcc--CCC----C--------
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV---SDTF-EEIRVAKAIIEGLDE--SAS----S-------- 241 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~~-~~~~~~~~i~~~l~~--~~~----~-------- 241 (468)
-.+++|+|+.|+|||||++.+.... ....+.+.+.- +... ...... ..+.. +.+ .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~----~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLR----RRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHh----hcEEEEecCCccCCCCCHHHhee
Confidence 4589999999999999999988631 12223333211 1100 001110 11100 000 0
Q ss_pred --hhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-C-CCcEEEEecCChhHHh
Q 043083 242 --LSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-L-HGSKILVTTRNESVAH 303 (468)
Q Consensus 242 --~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~ilvTtR~~~v~~ 303 (468)
.+.-+...-.+...+-.++-++++|+--.. +......+...+... . .|..||++|.+.....
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 111122233455666677788999987432 223334444444321 1 2567888888876554
No 274
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.41 E-value=0.0021 Score=55.51 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHhCC
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSL---SEFQSLMSHIHRSIEG 258 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~ 258 (468)
++.|.|.+|+|||++|..+... ... .++++.-...+ ..+....|..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999888753 111 23344433333 3344444433332222111 1111233344443332
Q ss_pred CcEEEEEecc
Q 043083 259 KKFFLVLDDV 268 (468)
Q Consensus 259 k~~LlVlDdv 268 (468)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 275
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0023 Score=53.85 Aligned_cols=36 Identities=33% Similarity=0.293 Sum_probs=26.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC 217 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (468)
..+|-|+|.+|+||||||+.+.. +....-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999988 3433333455553
No 276
>PRK07667 uridine kinase; Provisional
Probab=96.39 E-value=0.0043 Score=54.95 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665443 34589999999999999999988873
No 277
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.026 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998874
No 278
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.011 Score=50.40 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEG 258 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 258 (468)
.+++|+|..|.|||||.+.+.... ......+++...... ...... ..+.... +.+.-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 589999999999999999998732 233444444322111 111111 1111110 012222333345555666
Q ss_pred CcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChhHHhhh
Q 043083 259 KKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNESVAHMM 305 (468)
Q Consensus 259 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 305 (468)
.+-++++|+.-.. +......+...+... ..+..++++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 7788999988532 222333444444321 1256788888887665543
No 279
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.39 E-value=0.026 Score=51.38 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=31.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
...++.|.|++|+|||||+.+++.. ..+.. ..+++++... +..++...+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3459999999999999998665543 21222 3456676443 445555554
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.38 E-value=0.022 Score=51.60 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcCh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
+.+.+|.++||+|+||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 457788999999999999999988753
No 281
>PRK05439 pantothenate kinase; Provisional
Probab=96.38 E-value=0.02 Score=54.21 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=43.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccc--cCceEEEEeCCCcCHHHHHHHHHHhhc-cCCCChhhHHHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRN--FENVIWVCVSDTFEEIRVAKAIIEGLD-ESASSLSEFQSLMSHIHR 254 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~l~~ 254 (468)
..+.+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+..- ..+. ...+..-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 5678999999999999999988776 22221 1223344444322222222110 0000 112334556667777766
Q ss_pred HhCCCc
Q 043083 255 SIEGKK 260 (468)
Q Consensus 255 ~l~~k~ 260 (468)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666654
No 282
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.37 E-value=0.025 Score=51.51 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred eeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcCh---hc-ccccCceEEEEeCCC---------
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNND---EV-KRNFENVIWVCVSDT--------- 221 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~-~~~F~~~~wv~~~~~--------- 221 (468)
+.++++...++..... .+..+.+.++|++|.||-|.+..+.++. .+ +-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 4555555555555443 2346789999999999999886555431 01 112223344433221
Q ss_pred ------------cCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC-CCcE-EEEEeccCCCCccChhhhHhhhcCCC
Q 043083 222 ------------FEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE-GKKF-FLVLDDVWDGDYNKWEPFFLYLKNGL 287 (468)
Q Consensus 222 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 287 (468)
....-+.++++........- ... .+.| ++|+-.++.-..+.-..|+.-+..-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 11223344444443322110 011 2334 56666664433333334444444334
Q ss_pred CCcEEEEecCChh-HHhhh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHH
Q 043083 288 HGSKILVTTRNES-VAHMM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNL 365 (468)
Q Consensus 288 ~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 365 (468)
..+|+|+...+.. +-..+ +..-.+.++..+++|....+...+-..+ .....+++.+|+++++|+-.-...+...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~----l~lp~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG----LQLPKELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc----ccCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4677777544321 11111 1234678999999999999988764322 2223688999999999976555555444
Q ss_pred hcC
Q 043083 366 LRS 368 (468)
Q Consensus 366 L~~ 368 (468)
++-
T Consensus 232 ~~~ 234 (351)
T KOG2035|consen 232 VRV 234 (351)
T ss_pred HHh
Confidence 443
No 283
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.24 Score=46.87 Aligned_cols=128 Identities=11% Similarity=0.095 Sum_probs=78.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcCh---h---cc--cccCceEEEEe-CCCcCHHHHHHHHHHhhccCCCChhhHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNND---E---VK--RNFENVIWVCV-SDTFEEIRVAKAIIEGLDESASSLSEFQSLM 249 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~ 249 (468)
-..+..++|..|.||+++|..+.+.. . .. .|-+...++.. +.... .+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~Ir 75 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSEFL 75 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHHHH
Confidence 45677799999999999998877631 0 01 11112222221 11111 22222
Q ss_pred HHHHHH---h--CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC-hhHHh-hhCCCCeeeCCCCChHHHH
Q 043083 250 SHIHRS---I--EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN-ESVAH-MMGSTNIIFIEQLAEEECC 322 (468)
Q Consensus 250 ~~l~~~---l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~ 322 (468)
+.+... - .+++-++|+|++...+....+.|...+...+.++.+|++|.+ ..+.. ..+....+++.+++.++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222211 1 157778999999877766778888888877777777765544 33332 2333678999999999988
Q ss_pred HHHHH
Q 043083 323 SLLER 327 (468)
Q Consensus 323 ~Lf~~ 327 (468)
..+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77765
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.36 E-value=0.02 Score=52.46 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=33.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
....++.|.|.+|+|||+||.++.... . ..-..++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 356799999999999999998766521 1 2234588888765 44444444
No 285
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.36 E-value=0.011 Score=52.70 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=59.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---Ch----hhHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---SL----SEFQSLMSHI 252 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~l~~~l 252 (468)
..++.|.|+.|.||||+.+.+....-.. + .-.+++... ..-.+...|...++.... .. .+..++. .+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHH-HH
Confidence 4789999999999999998876431111 0 011111111 001222233333322211 11 1112221 11
Q ss_pred HHHhCCCcEEEEEeccCCCCcc-C----hhhhHhhhcCCCCCcEEEEecCChhHHhhhCC
Q 043083 253 HRSIEGKKFFLVLDDVWDGDYN-K----WEPFFLYLKNGLHGSKILVTTRNESVAHMMGS 307 (468)
Q Consensus 253 ~~~l~~k~~LlVlDdv~~~~~~-~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~ 307 (468)
.. +..++-|+++|........ + ...+...+... |+.+|++|....++..+..
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhhc
Confidence 12 2356789999998543211 1 11233333332 7789999999888776543
No 286
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.35 E-value=0.028 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 287
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0025 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988873
No 288
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.039 Score=54.75 Aligned_cols=52 Identities=27% Similarity=0.218 Sum_probs=37.3
Q ss_pred ceeecc---chHHHHHHHhhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChh
Q 043083 154 EVCGRV---DEKNELLSKLLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDE 205 (468)
Q Consensus 154 ~~vGR~---~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~ 205 (468)
++-|-+ .|++++++.|.++..- +..-++=|.++|++|.|||-||++++-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 455654 4667788888655421 123367789999999999999999998543
No 289
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.34 E-value=0.026 Score=50.54 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC-CCCCcEEEEecCChhHHhhhCCCCeeeCCC
Q 043083 251 HIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN-GLHGSKILVTTRNESVAHMMGSTNIIFIEQ 315 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~ 315 (468)
.+...+-.++-+++||+--.. +......+...+.. ...|..||++|.+...... .+.+.++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 345555667789999987432 22233445455542 2236678888888765443 45666655
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0034 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|.|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999873
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.32 E-value=0.043 Score=47.06 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=63.8
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCce--EEEEeCCCcCHHHHHHHHHHhhccC----------CCCh---hhH
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENV--IWVCVSDTFEEIRVAKAIIEGLDES----------ASSL---SEF 245 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~---~~~ 245 (468)
..|-|++..|.||||.|--..-. .....+.+. =|+--.........+..+ .+... .+.. ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 57888888999999999554432 222233321 133222222333343332 11100 0111 112
Q ss_pred HHHHHHHHHHhCCCcE-EEEEeccCC---CCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 246 QSLMSHIHRSIEGKKF-FLVLDDVWD---GDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
.+.....++.+...+| |+|||.+-. ...-..+.+...+.....+.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2334444555544444 999999832 222345677777877777889999999863
No 292
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.31 E-value=0.055 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|..|+|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.015 Score=58.52 Aligned_cols=89 Identities=18% Similarity=0.118 Sum_probs=44.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+++|+|++|+||||++..+............+..++... .......+......++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 357999999999999999987775321111122344444322 11122222222233332211222333444444333 2
Q ss_pred CCcEEEEEeccC
Q 043083 258 GKKFFLVLDDVW 269 (468)
Q Consensus 258 ~k~~LlVlDdv~ 269 (468)
..-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34578888774
No 294
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.30 E-value=0.0032 Score=56.58 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....+|+|.|.+|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988873
No 295
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.29 E-value=0.0033 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998885
No 296
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.29 E-value=0.019 Score=57.11 Aligned_cols=25 Identities=40% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+.+|.++|.+|+||||++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999888763
No 297
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.29 E-value=0.0058 Score=57.07 Aligned_cols=95 Identities=27% Similarity=0.303 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhh-ccCCCC
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGL-DESASS 241 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~ 241 (468)
..+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.+...+...+ +.+++.- ......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 4566666542 34679999999999999998876321 1111 1334555554444333 3333221 111100
Q ss_pred hhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChh
Q 043083 242 LSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWE 277 (468)
Q Consensus 242 ~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~ 277 (468)
. -.--.+|++++.+||+--...+.|.
T Consensus 93 ~----------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 V----------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp E----------EEEESSSEEEEEEETTT-S---TTS
T ss_pred C----------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0001478899999999665544443
No 298
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.29 E-value=0.019 Score=51.08 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=61.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcCh--h-ccc--ccC--------------c-eEEEEeCCCcCHHHHHHHHHHhhccCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNND--E-VKR--NFE--------------N-VIWVCVSDTFEEIRVAKAIIEGLDESA 239 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~--~-~~~--~F~--------------~-~~wv~~~~~~~~~~~~~~i~~~l~~~~ 239 (468)
..+++|+|..|.|||||.+.+.... . ... .|+ . +.++.-....-......+++... .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---~ 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---N 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---c
Confidence 4589999999999999999888741 1 110 010 0 11221111000000111111111 1
Q ss_pred CChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChhHHh
Q 043083 240 SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNESVAH 303 (468)
Q Consensus 240 ~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 303 (468)
...+.-+...-.+.+.+-.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 12222233334456666677789999987432 222334444444321 23667888888877655
No 299
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.28 E-value=0.0064 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.26 E-value=0.053 Score=51.74 Aligned_cols=49 Identities=31% Similarity=0.236 Sum_probs=34.2
Q ss_pred eeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 043083 310 IIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAA 359 (468)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 359 (468)
++++++++.+|+..++..+.-.+-- ......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987643221 111333455667777779999644
No 301
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.26 E-value=0.053 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||.+.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 302
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.24 E-value=0.047 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988763
No 303
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.23 E-value=0.015 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988873
No 304
>PRK08233 hypothetical protein; Provisional
Probab=96.22 E-value=0.0036 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988864
No 305
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.21 E-value=0.0039 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998863
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=96.21 E-value=0.019 Score=56.99 Aligned_cols=24 Identities=42% Similarity=0.403 Sum_probs=20.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.+|.++|++|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997765554
No 307
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0098 Score=49.58 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=31.9
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES 238 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 238 (468)
+|.|-|++|+||||+|+.+.++.-.. . .+.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCCC
Confidence 68999999999999999998742211 1 13346778888776654
No 308
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.18 E-value=0.0033 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
++.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988873
No 309
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.16 E-value=0.011 Score=55.92 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=49.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-+++-|+|+.|+||||||.++... .+..-..++|+...+.+++... +.++...+ .+...++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHH
Confidence 4578999999999999999887763 3333345899998887766433 33333211 1223345555555
Q ss_pred HHhC-CCcEEEEEeccC
Q 043083 254 RSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 254 ~~l~-~k~~LlVlDdv~ 269 (468)
.+++ +.--++|+|.|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 5554 334589999883
No 310
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.022 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999885
No 311
>PRK06762 hypothetical protein; Provisional
Probab=96.15 E-value=0.0038 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988863
No 312
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.13 E-value=0.021 Score=51.09 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=50.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-cCHHHHHHHHHHhhccC-------CCChhhHHH-----
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-FEEIRVAKAIIEGLDES-------ASSLSEFQS----- 247 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 247 (468)
..++|.|.+|+|||+|+..+.+.. .-+.++++.+++. .+..++..++...-... ..+.....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468999999999999999888742 2233477777764 45556666654431111 111111111
Q ss_pred HHHHHHHHh--CCCcEEEEEecc
Q 043083 248 LMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 248 l~~~l~~~l--~~k~~LlVlDdv 268 (468)
..-.+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111222333 699999999999
No 313
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.03 Score=59.77 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=69.5
Q ss_pred eeeccchHHHHHHHhhcCCCCCC--CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 155 VCGRVDEKNELLSKLLCESSEQQ--QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 155 ~vGR~~e~~~l~~~L~~~~~~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
++|-++.+..|.+.+.....+.. .....+.+.|+.|+|||-||+.+.. -+-+..+..+-++.+. ... .
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e--v 633 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE--V 633 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--h
Confidence 56666666667666654442211 2577888999999999999998876 2323333444444443 111 2
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcE-EEEEeccCCCCccChhhhHhhhcC
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKF-FLVLDDVWDGDYNKWEPFFLYLKN 285 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~ 285 (468)
..+...++.... .+....|.+.++.++| +|.|||+...+......+...+..
T Consensus 634 skligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 333223221111 1112356666666655 788999988776556655566543
No 314
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.12 E-value=0.053 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998864
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.12 E-value=0.05 Score=50.95 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=35.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEG 234 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 234 (468)
...++.|.|.+|+|||+++.+++.... ..+=..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345888999999999999988776422 22123488888766 344555555443
No 316
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.019 Score=51.06 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+...+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998887
No 317
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.10 E-value=0.01 Score=52.41 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=27.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhccccc--------CceEEEEeCCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNF--------ENVIWVCVSDT 221 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 221 (468)
.++.|.|++|+|||+++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 378999999999999997777643322222 24888887765
No 318
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.10 E-value=0.038 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 319
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.10 E-value=0.045 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.++.-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 320
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.10 E-value=0.06 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-.+++|+|+.|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998863
No 321
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.068 Score=48.65 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
-.|.+.+-.++-+++||+-... +......+...+.....|..||++|.+.....
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 3455556677789999987542 22233344444443223667888888876654
No 322
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.09 E-value=0.031 Score=52.04 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=65.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE---eCCCcCHHHHHHHH--HHhh
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC---VSDTFEEIRVAKAI--IEGL 235 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i--~~~l 235 (468)
..+.++..|... ....-++|+|+.|+|||||.+.+..... .....+++. +.......++...+ +.+.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHhcccccc
Confidence 345555666532 2356899999999999999999987321 222333332 11100112222111 0000
Q ss_pred --ccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 236 --DESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 236 --~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
+...+-..+..... .+...+ ...+-++++|.+-.. ..+..+...+. .|..+|+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHH-HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00000011111111 122222 257889999998432 33444444443 4778999999876643
No 323
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.08 E-value=0.072 Score=48.93 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=28.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD 220 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 220 (468)
.-.++.|.|.+|+|||+++.+++.+...... ..++|++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC
Confidence 3468999999999999999887654222212 2467777555
No 324
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.07 E-value=0.068 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-..++|+|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 34899999999999999998875
No 325
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.06 E-value=0.025 Score=56.12 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=48.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhcc-------CCCChhh----HHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDE-------SASSLSE----FQS 247 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~----~~~ 247 (468)
.-..++|+|..|+|||||++.+.... .....+++..-....+...+....+..... +.+...- ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34579999999999999999887632 222345555433334454444433332210 1111100 111
Q ss_pred HHHHHHHHh--CCCcEEEEEecc
Q 043083 248 LMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 248 l~~~l~~~l--~~k~~LlVlDdv 268 (468)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122334444 589999999999
No 326
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.04 E-value=0.04 Score=48.97 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 327
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.04 E-value=0.059 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 328
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.03 E-value=0.072 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||.+.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 329
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.063 Score=49.12 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
-.|...|-.++-+++||+.... +......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3455666677889999987542 222334455555432226678888888766543
No 330
>PRK06547 hypothetical protein; Provisional
Probab=96.02 E-value=0.0054 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998863
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.059 Score=52.16 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=51.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-cCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-FEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
..+++.|+|+.|+||||++..+......+ . ..+.+++.... ......+....+.++.......+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999998877532111 2 23556665432 122344555555554332222344555555544321
Q ss_pred -CCcEEEEEeccCC
Q 043083 258 -GKKFFLVLDDVWD 270 (468)
Q Consensus 258 -~k~~LlVlDdv~~ 270 (468)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3445788887743
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.02 E-value=0.0095 Score=54.03 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=37.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
+..++++.+.... .+..+|+|+|+||.|||||...+......+.+=-.++-|.-|.+++--.++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4566777776433 3578999999999999999988776433332322355565566665544443
No 333
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.01 E-value=0.064 Score=48.62 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChhHHhh
Q 043083 251 HIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNESVAHM 304 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 304 (468)
.+...+-.++-+++||+.-.. +......+...+... ..|..||++|.+......
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 345555667788999987442 222334444444321 236678999988776543
No 334
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.038 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+++|+|+.|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999886
No 335
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.00 E-value=0.038 Score=56.59 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++|....++++.+.+..... ...-|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999988888887754332 2346899999999999999999864
No 336
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.074 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 458999999999999999988864
No 337
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.96 E-value=0.061 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988863
No 338
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.11 Score=47.33 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
-.+...+-.++-+++||+.-.. +......+...+.....+..||++|.+......
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3455555566778999987442 222334455555432236678888888766543
No 339
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.95 E-value=0.026 Score=58.02 Aligned_cols=134 Identities=10% Similarity=0.098 Sum_probs=70.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH-HH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK-AI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~-~i 231 (468)
..++|....+.++++.+..... .-..|.|+|..|+||+++|+.++... ...-...+.+++..-. ...+. .+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~--~~~~e~el 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP--DDVVESEL 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC--HHHHHHHh
Confidence 3689998888888777643321 22348899999999999999977531 1111223445555432 12222 22
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
.-........... .....+. ....=.|+||+++.........|...+..+. ...+||.||...
T Consensus 276 FG~~~~~~~~~~~--~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALE--GKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCccc--CCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1100000000000 0000000 1223347899998776655566777665431 134788877654
No 340
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.031 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+...
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998864
No 341
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.95 E-value=0.05 Score=47.42 Aligned_cols=119 Identities=15% Similarity=0.018 Sum_probs=64.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe---CCCcCHHHHHHHH--HHhh--ccC-----CCCh---hh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV---SDTFEEIRVAKAI--IEGL--DES-----ASSL---SE 244 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~i--~~~l--~~~-----~~~~---~~ 244 (468)
...|.|+|..|-||||.|.-..-. .....+. +..+.. .........+..+ +.-. +.. .+.. ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR-AVGHGKK-VGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH-HHHCCCe-EEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468999999999999999554432 1222222 222221 2122333333321 0000 000 0111 11
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEeccCC---CCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 245 FQSLMSHIHRSIEGKK-FFLVLDDVWD---GDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 245 ~~~l~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
..+..+..++.+...+ =|+|||.+-. ......+.+...+.....+.-||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233444555555444 4999999832 223356677888877777889999999863
No 342
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.95 E-value=0.042 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999886
No 343
>PRK03839 putative kinase; Provisional
Probab=95.95 E-value=0.005 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.0
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 344
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.94 E-value=0.027 Score=54.76 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=55.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhc----ccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEV----KRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHR 254 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 254 (468)
.++=+-|+|..|.|||.|...+|+...+ +-||. ....++-+.+......... ...+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHHH
Confidence 4677899999999999999999986433 22332 2223332222221111122 223344
Q ss_pred HhCCCcEEEEEeccCCCCccChhhhHhhhcC-CCCCcEEEEecCCh
Q 043083 255 SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 255 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
.+.++..||.||.+.-.+..+---+...|.. ...|. +||+|.|.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 5566777999999865544332222223321 23466 55555443
No 345
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.94 E-value=0.048 Score=50.95 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVS 219 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 219 (468)
...+++.++|++|+||||++..++... ...-..+..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC
Confidence 346899999999999999997777532 2221235555543
No 346
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.079 Score=49.58 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHH-hhhCCCCeeeCCCC
Q 043083 257 EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVA-HMMGSTNIIFIEQL 316 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~~~~~~~~~l~~L 316 (468)
.++.-++|+|+++..+...++.|...+..-..++.+|++|.+. .+. +..+....+.+.++
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 3556689999999988888999999998766677766666663 333 22222345555544
No 347
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.92 E-value=0.011 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988863
No 348
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.91 E-value=0.006 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998885
No 349
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.91 E-value=0.031 Score=54.62 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=49.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC-----hhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS-----LSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~ 253 (468)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ..++. .-+..++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4568999999999999999888763 2222235778876543 23322 223344432221 223444444442
Q ss_pred HHhCCCcEEEEEeccCC
Q 043083 254 RSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~ 270 (468)
..+.-+||+|.+..
T Consensus 156 ---~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ---ELKPDLVIIDSIQT 169 (372)
T ss_pred ---hcCCcEEEEcchHH
Confidence 34667899999854
No 350
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.90 E-value=0.047 Score=50.72 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=50.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC-
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE- 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~- 257 (468)
..+++++|.+|+||||++..+.... ...=..+.+++..... .....+....+.++.......+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 4689999999999999998776532 1111234555543221 12222223333333221112233444444433222
Q ss_pred CCcEEEEEeccCCC--CccChhhhHhhhc
Q 043083 258 GKKFFLVLDDVWDG--DYNKWEPFFLYLK 284 (468)
Q Consensus 258 ~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 284 (468)
.+.=++++|..-.. +....+.+...+.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 24468888987543 1223444444443
No 351
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.89 E-value=0.017 Score=53.85 Aligned_cols=50 Identities=26% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
+.-+++.|+|.+|+|||+++.++.. ........++||+.... ...+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 4567999999999999999988887 34445777999998874 33444333
No 352
>PRK04040 adenylate kinase; Provisional
Probab=95.88 E-value=0.0063 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999998887
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.2 Score=43.83 Aligned_cols=126 Identities=19% Similarity=0.247 Sum_probs=62.5
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-------CHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-------EEIRVAKAIIEGLDESASSLSEFQSLMSHIH 253 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-------~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 253 (468)
+.|.+.|.+|+||||+|+++... .++.-..++- ++.+. ....+..+..+... .+.....|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~--L~~~i~~vi~--l~kdy~~~i~~DEslpi~ke~yres~--------~ks~~rlld 69 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE--LRQEIWRVIH--LEKDYLRGILWDESLPILKEVYRESF--------LKSVERLLD 69 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH--HHHhhhhccc--cchhhhhheecccccchHHHHHHHHH--------HHHHHHHHH
Confidence 46788999999999999988873 2221111111 11100 00011111111110 111112233
Q ss_pred HHhCCCcEEEEEeccCCCCccChhhhHhhhc----CCCCCcEEEEecCChhHHhhhCCCCeeeCCCCChHHHHHHHHHh
Q 043083 254 RSIEGKKFFLVLDDVWDGDYNKWEPFFLYLK----NGLHGSKILVTTRNESVAHMMGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~----~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
..+ +++++|.||. .-+..+...|. .-.....||-+--..+++..... -.-+|.+++-..+|..++
T Consensus 70 Sal--kn~~VIvDdt-----NYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~---ergepip~Evl~qly~Rf 138 (261)
T COG4088 70 SAL--KNYLVIVDDT-----NYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR---ERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred HHh--cceEEEEecc-----cHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc---cCCCCCCHHHHHHHHHhh
Confidence 333 4899999998 23334443332 12223457766666666654332 234666777667776664
No 354
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.87 E-value=0.061 Score=49.55 Aligned_cols=125 Identities=15% Similarity=0.045 Sum_probs=63.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcc-c--ccCc--eEEEEeC----CCcCHHHHH--------------HHHHHhhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVK-R--NFEN--VIWVCVS----DTFEEIRVA--------------KAIIEGLD 236 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~--~~wv~~~----~~~~~~~~~--------------~~i~~~l~ 236 (468)
-.+++|+|+.|+|||||++.+....... . .++. +.++.-. ...+..+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4589999999999999999998742111 1 1111 2222111 011222222 12233222
Q ss_pred cCC------CChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC--CCCcEEEEecCChhHHhh
Q 043083 237 ESA------SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG--LHGSKILVTTRNESVAHM 304 (468)
Q Consensus 237 ~~~------~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 304 (468)
... ...+.-+...-.|...|-.++-+++||+.-.. +...-..+...+... ..|..||++|.+......
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 211 01122222233455666778889999987432 222223333334321 235678888888766554
No 355
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.025 Score=54.47 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=52.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC-----hhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS-----LSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~ 253 (468)
.-.++.|-|.+|+|||||.-++... ....- .+++|+-.+... ++ +--++.++..... ..+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3568999999999999999888873 33222 688887665432 22 2223445533322 244555544444
Q ss_pred HHhCCCcEEEEEeccCC
Q 043083 254 RSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~ 270 (468)
+ .++-|+|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6888999999854
No 356
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.85 E-value=0.083 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 357
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.84 E-value=0.044 Score=58.03 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998875
No 358
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.84 E-value=0.028 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.245 Sum_probs=18.0
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999988873
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.84 E-value=0.021 Score=55.39 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=60.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|.|+.|+||||+.+.+.+. +..+....++. +.++.... .... ..+-.+.....+.......++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 357999999999999999988762 33334444443 33322111 0000 000000000111123455677778888
Q ss_pred cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH
Q 043083 260 KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA 302 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 302 (468)
+=.|++|.+.+. +.+... +.....|..++.|....+..
T Consensus 196 pd~i~vgEird~--~~~~~~---l~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELA---LTAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHH---HHHHHcCCcEEEEEcCCCHH
Confidence 899999999533 333332 22233466677777665443
No 360
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.83 E-value=0.11 Score=47.50 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 251 HIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
.+.+.+-.++-+++||+.... +......+...+.....|..||++|.+.....
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 344555566779999987542 22233344444443223667888888877664
No 361
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.83 E-value=0.011 Score=54.35 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
.+++..+.... ++..+|+|+|.||+|||||...+.....-+.+--.++=|.-|++++--.++-+=
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 45666665433 577899999999999999998777654334443446666667777655555443
No 362
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.043 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999987765
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.81 E-value=0.009 Score=52.49 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998874
No 364
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=1.6 Score=40.53 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred ceeeccchHHHHHHHhhcCC------CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCES------SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 227 (468)
++-|-+...+.|.+...-+- .+.....+-|.++|++|.||+.||+.|+.... .. |.++|..- +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehHH----H
Confidence 35566666666665543221 01223467899999999999999999998432 22 23444421 1
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCC-------CccChhhhHh----hhc---CCCCCcEE
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDG-------DYNKWEPFFL----YLK---NGLHGSKI 292 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~-------~~~~~~~l~~----~l~---~~~~gs~i 292 (468)
....- .+.+.++..|-+.. ++++.+|.+|.++.. ..+.-..+.. .+. +...|.-|
T Consensus 203 ----vSKWm------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 ----VSKWM------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ----HHHHh------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 11111 11234444454444 478899999998541 1111122222 222 22335555
Q ss_pred EEecCChhHHhhh---CCCCeeeCCCCChHHHH-HHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 293 LVTTRNESVAHMM---GSTNIIFIEQLAEEECC-SLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 293 lvTtR~~~v~~~~---~~~~~~~l~~L~~~e~~-~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
|-.|..+=+.... .....+-+ ||++..|. .+|+-+.. .. .+...++-.+++.+++.|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG-~t---p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLG-DT---PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccC-CC---ccccchhhHHHHHhhcCCC
Confidence 5566655333211 11223333 45666655 44544432 21 1222233456677777764
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.80 E-value=0.038 Score=51.35 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD 220 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 220 (468)
..+++.|.|++|+|||+|+.+++... .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 46789999999999999998876532 12 223577888764
No 366
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.80 E-value=0.075 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998863
No 367
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.79 E-value=0.0086 Score=48.26 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccC
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFE 211 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 211 (468)
|.|.|.+|+|||++|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 4555664
No 368
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.78 E-value=0.045 Score=48.42 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=58.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE---------------eCCCc---CHHHHHHHHHHhhccCCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC---------------VSDTF---EEIRVAKAIIEGLDESASS 241 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~~~~~---~~~~~~~~i~~~l~~~~~~ 241 (468)
-.+++|.|+.|+|||||.+.+..-.. .....+.+++. +.+.. ....+...+.-.... ..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RG 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--cc
Confidence 45899999999999999999886320 01111211110 11111 001122221110000 01
Q ss_pred hhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC-CCCcEEEEecCChh
Q 043083 242 LSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG-LHGSKILVTTRNES 300 (468)
Q Consensus 242 ~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 300 (468)
.+.-+...-.+.+.+-.++-++++|+.-.. +......+...+... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 222223333455666667778999987442 222334444444421 23667888888764
No 369
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.78 E-value=0.0087 Score=56.88 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=43.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..|+|.++.++++++.+.......+..-+++.++|+.|.|||||+..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999776655566789999999999999999988876
No 370
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.77 E-value=0.09 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++|+|..|+|||||.+.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999998874
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.77 E-value=0.011 Score=48.51 Aligned_cols=39 Identities=23% Similarity=0.077 Sum_probs=28.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+..++-+.|...- ....+|.+.|.-|+|||||++.++..
T Consensus 7 ~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555554322 23458999999999999999999874
No 372
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.76 E-value=0.041 Score=54.40 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=48.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC-------CCChhhHHH-----
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES-------ASSLSEFQS----- 247 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 247 (468)
-..++|+|..|+|||||++.+..... ....++...-...-+..++....+..-+.. ..+.....+
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999998887422 222233332233334555555444332111 111111111
Q ss_pred HHHHHHHHh--CCCcEEEEEeccC
Q 043083 248 LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 248 l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
..-.+.+++ +++++||++||+-
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 122344444 5889999999993
No 373
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.75 E-value=0.09 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 374
>PRK04328 hypothetical protein; Provisional
Probab=95.74 E-value=0.037 Score=51.09 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=30.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT 221 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 221 (468)
.-.++.|.|.+|+|||+|+.++... .. ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 4678999999999999999877653 12 22345788887663
No 375
>PLN02348 phosphoribulokinase
Probab=95.74 E-value=0.06 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+.+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998887
No 376
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.74 E-value=0.029 Score=55.98 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=54.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhH-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEF----- 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 245 (468)
.-..++|.|.+|+|||||+..+.+.... .+-+.++++-++... +..++...+...-... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3457899999999999999888764322 245677777777643 4555666555432111 1111111
Q ss_pred HHHHHHHHHHh---CCCcEEEEEecc
Q 043083 246 QSLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 246 ~~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
....-.+.+++ +++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12223455555 389999999999
No 377
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.051 Score=58.17 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=78.0
Q ss_pred chHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC
Q 043083 160 DEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA 239 (468)
Q Consensus 160 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 239 (468)
..+.+|++.+. ...++.|.|+.|+||||-.-+++.+.-. .....+-+.=........+...+.+.++...
T Consensus 53 ~~~~~i~~ai~--------~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIE--------QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHH--------hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 45777888774 4569999999999999999666653221 2233555554555566777788888887642
Q ss_pred CC-------------------hhhHHHHHHHHH-HHhCCCcEEEEEeccCCCCccChhhhHhh----hcCCCCCcEEEEe
Q 043083 240 SS-------------------LSEFQSLMSHIH-RSIEGKKFFLVLDDVWDGDYNKWEPFFLY----LKNGLHGSKILVT 295 (468)
Q Consensus 240 ~~-------------------~~~~~~l~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~----l~~~~~gs~ilvT 295 (468)
.+ ..+...+...+. +.+=.+=-.||+|.++..+. +-+-+... +..-.+.-||||+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEEE
Confidence 21 122233333333 22223334899999987542 22222222 3333335899999
Q ss_pred cCChhH
Q 043083 296 TRNESV 301 (468)
Q Consensus 296 tR~~~v 301 (468)
|=.-+.
T Consensus 202 SATld~ 207 (845)
T COG1643 202 SATLDA 207 (845)
T ss_pred ecccCH
Confidence 976443
No 378
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.099 Score=44.99 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccCCCCc-cChhhhHhhhc-CCCCCcEEEEecCChhH
Q 043083 246 QSLMSHIHRSIEGKKFFLVLDDVWDGDY-NKWEPFFLYLK-NGLHGSKILVTTRNESV 301 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~-~~~~gs~ilvTtR~~~v 301 (468)
++-.-.+.+..-.++-|-+||.....-+ ..-..+...+. ....|..||.||..+..
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 3344456666778889999998854321 22223333333 44567789999987643
No 379
>PRK05973 replicative DNA helicase; Provisional
Probab=95.71 E-value=0.052 Score=49.32 Aligned_cols=49 Identities=20% Similarity=0.100 Sum_probs=32.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
.-.++.|.|.+|+|||+++.++..... +. =..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 455899999999999999988765322 22 234677776653 34444443
No 380
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.70 E-value=0.0075 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988763
No 381
>PRK00625 shikimate kinase; Provisional
Probab=95.70 E-value=0.0069 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|+|++|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 382
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.70 E-value=0.026 Score=59.80 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=72.3
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+++... ..-...+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhc
Confidence 4588998888888777755432 223478999999999999999987321 111123344444432 222222332
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
.......... .....-....=.|+||++..........|...+..+. ...+||.||...
T Consensus 398 g~~~~~~~~~--------~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 398 GSDRTDSENG--------RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCCcCccCC--------CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 2111100000 0000001223458999998776666666777765331 134677777653
No 383
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.69 E-value=0.17 Score=45.07 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhh-hc-CCCCCcEEEEecCChhHHhh
Q 043083 247 SLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLY-LK-NGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 247 ~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~-l~-~~~~gs~ilvTtR~~~v~~~ 304 (468)
...-.+.+.+-.++-++++|+--.. +......+... +. ....|..||++|.+......
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3344566667778889999987442 22223344442 32 22336678888887766553
No 384
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.69 E-value=0.043 Score=54.24 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHH-----
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQ----- 246 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 246 (468)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+++.. +..++...++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999888631 22455556666644 3455555554332111 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeccC
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
...-.+.+++ +++++||++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122244444 6899999999993
No 385
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.47 Score=44.56 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=47.8
Q ss_pred CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHh-hhCCCCeeeCCCCChHHHHHHHHH
Q 043083 257 EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAH-MMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
.+++-++|+|+++..+....+.|...+..-..++.+|++|.+. .+.. ..+....+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4566799999999988888999999998766667777766654 3332 222245667766 66666666643
No 386
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.67 E-value=0.047 Score=49.73 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=29.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT 221 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 221 (468)
.-..+.|.|.+|+|||+|+.++.... .. .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 46789999999999999998766432 12 2345788877543
No 387
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.12 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|..|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.66 E-value=0.0064 Score=54.08 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 389
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.66 E-value=0.0078 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|.|+|++|+||||+|+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999873
No 390
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.64 E-value=0.0065 Score=48.03 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 391
>PRK05922 type III secretion system ATPase; Validated
Probab=95.64 E-value=0.064 Score=53.12 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=48.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccCC-------CChhh-----HH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDESA-------SSLSE-----FQ 246 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~-----~~ 246 (468)
-..++|+|..|+|||||.+.+.... ..+....+.++. ..+....+.+......... .+... ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4468999999999999999988742 223333333333 2334455544443322211 11111 11
Q ss_pred HHHHHHHHHh--CCCcEEEEEeccC
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
...-.+.+++ +++++|+++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222344454 5899999999993
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.62 E-value=0.034 Score=56.75 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEeecCCcchhHHHHHHhc--------------------Chhccccc---CceEEEEeCCCcCHHHHHHHHHHhhccCC
Q 043083 183 ISLVGLGGIGKTILAQLAYN--------------------NDEVKRNF---ENVIWVCVSDTFEEIRVAKAIIEGLDESA 239 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~--------------------~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 239 (468)
|+|+|+.|+|||||.+.+.. +.....-+ ...-|+.-........-.+..+..++...
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred C-------ChhhHHHHHHHHHHHhCCCcEEEEEeccCC-CCccChhhhHhhhcCCCCCcEEEEecCChhHHhhhCCCCee
Q 043083 240 S-------SLSEFQSLMSHIHRSIEGKKFFLVLDDVWD-GDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMGSTNII 311 (468)
Q Consensus 240 ~-------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~ 311 (468)
+ ..+.-+...-.|...+-.++=+||||.--| -+....+.|...|.... |+ ||+.|.++.....+. ..++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va-~~i~ 507 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVA-TRIW 507 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhc-ceEE
Q ss_pred eCCC
Q 043083 312 FIEQ 315 (468)
Q Consensus 312 ~l~~ 315 (468)
.+.+
T Consensus 508 ~~~~ 511 (530)
T COG0488 508 LVED 511 (530)
T ss_pred EEcC
No 393
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.1 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcCh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
--+-+|.|+.|+|||||+..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999988765
No 394
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.60 E-value=0.0069 Score=53.07 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 395
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.60 E-value=0.064 Score=49.59 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhc--ccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHHH--
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEV--KRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQS-- 247 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 247 (468)
-..++|.|-.|+|||+|+..+.+.... +.+-+.++++-+++.. +..++..++...-... ..+.....+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 446899999999999999888875331 1224568888887754 4556666555432111 111111111
Q ss_pred ---HHHHHHHHh--C-CCcEEEEEeccC
Q 043083 248 ---LMSHIHRSI--E-GKKFFLVLDDVW 269 (468)
Q Consensus 248 ---l~~~l~~~l--~-~k~~LlVlDdv~ 269 (468)
..-.+.+++ + ++++|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 122344555 3 789999999993
No 396
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.58 E-value=0.17 Score=42.90 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhccCCC------ChhhHHHHHHHHHHHhCCCcEEEEEecc----CCCCccChhhhHhhhcCCCCCcEE
Q 043083 223 EEIRVAKAIIEGLDESAS------SLSEFQSLMSHIHRSIEGKKFFLVLDDV----WDGDYNKWEPFFLYLKNGLHGSKI 292 (468)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~------~~~~~~~l~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~l~~~~~gs~i 292 (468)
+.....+..+.+++.... ..+.-++-.-.|.+.+...+-+++-|.- +...-....++.-.+ +...|+.+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 444556666776655421 2333445555677888888888888854 222112233333333 33568889
Q ss_pred EEecCChhHHhhhCC
Q 043083 293 LVTTRNESVAHMMGS 307 (468)
Q Consensus 293 lvTtR~~~v~~~~~~ 307 (468)
++.|.++.++..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999887653
No 397
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.58 E-value=0.019 Score=52.19 Aligned_cols=86 Identities=24% Similarity=0.284 Sum_probs=50.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC---------------CCC--
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES---------------ASS-- 241 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~-- 241 (468)
...++.|.|.+|+|||+|+.++... ..+..=..++|++...+ ...+...+- .++.. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4578999999999999999876642 11221234788887663 344444332 22210 000
Q ss_pred ---hhhHHHHHHHHHHHhCC-CcEEEEEecc
Q 043083 242 ---LSEFQSLMSHIHRSIEG-KKFFLVLDDV 268 (468)
Q Consensus 242 ---~~~~~~l~~~l~~~l~~-k~~LlVlDdv 268 (468)
..+...+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566666777666643 4478999987
No 398
>PRK08149 ATP synthase SpaL; Validated
Probab=95.58 E-value=0.06 Score=53.23 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=49.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccC-------CCChhhH-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDES-------ASSLSEF----- 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 245 (468)
.-..++|+|..|+|||||.+.++.... -+.++...+.. ..+..++....+...... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345789999999999999998887321 12333333433 234555555555532211 1111111
Q ss_pred HHHHHHHHHHh--CCCcEEEEEeccC
Q 043083 246 QSLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
......+.+++ +++++||++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11222334444 5899999999993
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.081 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++.++|+.|+||||++..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999999877763
No 400
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.57 E-value=0.036 Score=51.70 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC-----CC--ChhhHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES-----AS--SLSEFQSLMS 250 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~--~~~~~~~l~~ 250 (468)
.+..++.|+|.+|+|||||+..+.+. ...... ++.+ ..+..+..+ ...+...+.. .. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 56899999999999999999988873 333332 2222 222122221 1223332221 10 1123344555
Q ss_pred HHHHHhCCCcEEEEEeccCC
Q 043083 251 HIHRSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~ 270 (468)
.+..+.....-+||++++-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444456889999854
No 401
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.57 E-value=0.012 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999988864
No 402
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.56 E-value=0.014 Score=48.56 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=27.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD 220 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 220 (468)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999842 234555555666555
No 403
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.15 Score=53.13 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC------hhhHHHHHHHHHHHh
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS------LSEFQSLMSHIHRSI 256 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l~~~l~~~l 256 (468)
|.++|++|.|||-||++|+. ...-.| +..+.+. ..+.+.+.+...+.-
T Consensus 708 ILLYGPPGTGKTLlAKAVAT--EcsL~F------------------------lSVKGPELLNMYVGqSE~NVR~VFerAR 761 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVAT--ECSLNF------------------------LSVKGPELLNMYVGQSEENVREVFERAR 761 (953)
T ss_pred eEEECCCCCchHHHHHHHHh--hceeeE------------------------EeecCHHHHHHHhcchHHHHHHHHHHhh
Q ss_pred CCCcEEEEEeccCC---------CCccChhhhHhhh--------cCCCCCcEEEEecCChhHHhhh-----CCCCeeeCC
Q 043083 257 EGKKFFLVLDDVWD---------GDYNKWEPFFLYL--------KNGLHGSKILVTTRNESVAHMM-----GSTNIIFIE 314 (468)
Q Consensus 257 ~~k~~LlVlDdv~~---------~~~~~~~~l~~~l--------~~~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~ 314 (468)
...+|+|.||.++. ++-...+.+.+.+ .....+--||-.|..+++.+.. ...+.+.+.
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEec
Q ss_pred CCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHc
Q 043083 315 QLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKC 352 (468)
Q Consensus 315 ~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~ 352 (468)
+=+.+++..=.....-..-.....-++. +|+++|
T Consensus 842 ~~~d~esk~~vL~AlTrkFkLdedVdL~----eiAk~c 875 (953)
T KOG0736|consen 842 PNEDAESKLRVLEALTRKFKLDEDVDLV----EIAKKC 875 (953)
T ss_pred CCccHHHHHHHHHHHHHHccCCCCcCHH----HHHhhC
No 404
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.55 E-value=0.012 Score=51.65 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=27.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEE
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVC 217 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (468)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999999987 4445564444444
No 405
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.55 E-value=0.096 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999988863
No 406
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.12 Score=53.66 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=32.1
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM 304 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 304 (468)
-.|...|-.++-+++||.-.+. +...-..+...+.. .|..||++|.+......
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~ 217 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNS 217 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHh
Confidence 3455556667789999987542 22223334455543 35568888888766543
No 407
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.53 E-value=0.072 Score=50.81 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=47.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccC-------CCChhhH-----H
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDES-------ASSLSEF-----Q 246 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 246 (468)
...++|+|..|+|||||.+.+..... -+..+..-+.. ..+..++....+..-... ..+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999998887422 12233333433 334555555554432211 1111111 1
Q ss_pred HHHHHHHHHh--CCCcEEEEEecc
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv 268 (468)
...-.+.+++ +++.+||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222233444 589999999998
No 408
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.53 E-value=0.056 Score=53.58 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=50.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhH-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEF----- 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 245 (468)
.-..++|+|..|+|||||++.+.+... .+.++++-++... +..++....+..-+.. ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999998887422 2344556666544 3445554444332111 1111111
Q ss_pred HHHHHHHHHHh--CCCcEEEEEeccC
Q 043083 246 QSLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
....-.+.+++ +++++|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11222344444 5899999999993
No 409
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.52 E-value=0.081 Score=51.23 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=33.4
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC--CCCcEEEEecCChhHHhhhC
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG--LHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~ 306 (468)
-.|.+.|..++-+|++|+.-.. +...-..+...+..- ..|..||++|.+..+...++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~ 208 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3456666777889999987442 122222344444321 23667888888877765433
No 410
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.0091 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999884
No 411
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.50 E-value=0.13 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++|+|+.|+|||||++.+...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999998874
No 412
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.50 E-value=0.063 Score=53.18 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=50.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccC-------CCChhhHHHH--
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDES-------ASSLSEFQSL-- 248 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~l-- 248 (468)
.-..++|+|..|+|||||.+.+.+.. +.+..+++.++. .....+++.+....-... ..+......+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999888732 233455555554 344445555543211000 1111111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEeccC
Q 043083 249 ---MSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 249 ---~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
.-.+.+++ +++++||++||+-
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 22244444 5889999999993
No 413
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.50 E-value=0.065 Score=54.52 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|......++...+.... .....+.|.|..|+||+++|+.+..... ......+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 57888777777776665432 1234578999999999999999886321 11122333444332 223332222
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCChhHH
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNESVA 302 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~~v~ 302 (468)
++.......... ............-.|+||++..........|...+..+. .+.+||+||......
T Consensus 206 -fg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 282 (463)
T TIGR01818 206 -FGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA 282 (463)
T ss_pred -cCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH
Confidence 111100000000 000000111223458899998776666666776665331 245888888654211
Q ss_pred ------------hhhCCCCeeeCCCCC--hHHHHHHHHH
Q 043083 303 ------------HMMGSTNIIFIEQLA--EEECCSLLER 327 (468)
Q Consensus 303 ------------~~~~~~~~~~l~~L~--~~e~~~Lf~~ 327 (468)
..+ ....+.+++|. .++.-.|+..
T Consensus 283 ~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 283 LVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred HHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHH
Confidence 111 12367778877 5555555443
No 414
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.50 E-value=0.035 Score=56.22 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=52.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-ccCc-eEEEEeCCCcC-HHHHHHHHHHhhccCCC
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-NFEN-VIWVCVSDTFE-EIRVAKAIIEGLDESAS 240 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~~~ 240 (468)
++++.|..- ..-....|+|++|+|||||++.+.+. +.. +-++ ++.+-+..... +..+...+-..+-....
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC
Confidence 455555432 23456899999999999999999883 322 2233 23455555432 33333322111111111
Q ss_pred C-h----hhHHHHHHHHHHHh--CCCcEEEEEecc
Q 043083 241 S-L----SEFQSLMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 241 ~-~----~~~~~l~~~l~~~l--~~k~~LlVlDdv 268 (468)
+ . .....+.-.+.+++ .++.+||++|++
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1 1 11122223344444 689999999999
No 415
>PF13479 AAA_24: AAA domain
Probab=95.48 E-value=0.036 Score=49.83 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=17.9
Q ss_pred EEEEEeecCCcchhHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLA 200 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v 200 (468)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999876
No 416
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.09 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 417
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.48 E-value=0.036 Score=54.25 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceeeccchHHHHHHHhhcC--------CCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCE--------SSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++|.++.++.+...+... .-.....++.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35788888887776555431 0001123467999999999999999999873
No 418
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.48 E-value=0.059 Score=53.60 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=50.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC-------CCChhhHH-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES-------ASSLSEFQ----- 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 246 (468)
.-..++|.|..|+|||||++.+...... -..+++..-....+..++...+...-... ..+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4458899999999999999999864221 12344444334445555555554432111 11111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEecc
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv 268 (468)
...-.+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344444 588999999999
No 419
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.47 E-value=0.021 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=29.5
Q ss_pred chHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 160 DEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 160 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.+++|.++|. + ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45778888883 3 68999999999999999999875
No 420
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.47 E-value=0.13 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 421
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.47 E-value=0.01 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999987
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.47 E-value=0.0096 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999988863
No 423
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.46 E-value=0.025 Score=52.13 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred ceeeccchHHHHHHHhhcCCC-CCCCCeEEEEEeecCCcchhHHHHHHhcChhc-ccccCceEEEEeCCCcCHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS-EQQQGLYVISLVGLGGIGKTILAQLAYNNDEV-KRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
.++|-.-..+.++..+.+-.. +...++-+++.+|.+|+||.-.++.++++..- ..+-+.+- ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~---------------~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH---------------HF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH---------------Hh
Confidence 356655555555555533221 12467889999999999999999888874211 11111111 00
Q ss_pred HHhhccCCCChhhHHHHHHHHHHH----h-CCCcEEEEEeccCCCCccChhhhHhhhc
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRS----I-EGKKFFLVLDDVWDGDYNKWEPFFLYLK 284 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~----l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 284 (468)
...+. -+....++.-...|+++ + .-++.|+|||+++.....-.+.|...+.
T Consensus 148 vat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 148 VATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111 11122222223333333 3 2478999999998876655566655554
No 424
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.46 E-value=0.075 Score=46.98 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 425
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.46 E-value=0.009 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999988873
No 426
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.42 E-value=0.048 Score=57.82 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=54.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
..+++-|.|++|+|||||+.+++... ...=..++|+.....++.. .+++++.... ...+.++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 56788999999999999997765522 2222447899887777643 4555554321 1223345555566
Q ss_pred HHhC-CCcEEEEEeccC
Q 043083 254 RSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 254 ~~l~-~k~~LlVlDdv~ 269 (468)
..++ ++.-|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6554 456699999984
No 427
>PRK06217 hypothetical protein; Validated
Probab=95.42 E-value=0.0097 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.|.|.|.+|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 428
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.41 E-value=0.03 Score=54.15 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=66.3
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|+++....+...+... +.+.+.|++|+|||+||+.+... .. -..+++.+.......+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3888888888887777643 35889999999999999999873 32 23566777777776666543322
Q ss_pred hhccCCCChhhHHHHHHHHHHHh-----CCCcEEEEEeccCCCCccChhhhHhhhc
Q 043083 234 GLDESASSLSEFQSLMSHIHRSI-----EGKKFFLVLDDVWDGDYNKWEPFFLYLK 284 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 284 (468)
........ -..+. ..-+.++.+|.++......-..|...+.
T Consensus 92 ~~~~~~~~----------~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLEPG----------EFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhccCC----------eEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 21100000 00000 1111589999998876555555555553
No 429
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.40 E-value=0.021 Score=50.97 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999998883
No 430
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.40 E-value=0.12 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 431
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.38 E-value=0.015 Score=52.72 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=57.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---ChhhHHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---SLSEFQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~~ 255 (468)
..+++.|+|+.|.||||+.+.+....-. +..-.+|++... .......++..++.... ..+....-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4578999999999999999876642100 000112222110 00111222222222111 111222222223333
Q ss_pred h--CCCcEEEEEeccCCC---C-c--cChhhhHhhhcCCCCCcEEEEecCChhHHhhh
Q 043083 256 I--EGKKFFLVLDDVWDG---D-Y--NKWEPFFLYLKNGLHGSKILVTTRNESVAHMM 305 (468)
Q Consensus 256 l--~~k~~LlVlDdv~~~---~-~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 305 (468)
+ -.++-|++||..-.. . . ..|. +...+.. ..|+.+|+||....+...+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHh
Confidence 3 357889999999321 1 1 1122 2233332 2467899999987666543
No 432
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.37 E-value=0.0093 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988873
No 433
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.37 E-value=0.26 Score=45.61 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=68.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
+.+.++|+.|+|||+-++.+++. .+..+.+..+..++...+...+.......... ........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 38899999999999999998873 23344456677777777777777666554432 23445556666678888
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCC
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNG 286 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~ 286 (468)
-+++.|+........++.+.......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 89999998776666666666554443
No 434
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.37 E-value=0.054 Score=53.96 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=53.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHH----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQ---- 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 246 (468)
.-..++|.|.+|+|||||+..+...... ++=+.++++-++... +..++...+...-... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3457899999999999999887653221 111346677776643 4566666665432111 11111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEecc
Q 043083 247 -SLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 247 -~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
...-.+.+++ +++++||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1222345555 679999999999
No 435
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.37 E-value=0.012 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEeecCCcchhHHHHHHhcCh
Q 043083 183 ISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~ 204 (468)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999988753
No 436
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.36 E-value=0.17 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999998863
No 437
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.36 E-value=0.04 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
+++.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988864
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.34 E-value=0.018 Score=61.81 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+..++.|+|+.|.|||||.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347899999999999999988865
No 439
>PRK15453 phosphoribulokinase; Provisional
Probab=95.33 E-value=0.094 Score=48.61 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=42.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHH--Hhh--ccCC--CChhhHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAII--EGL--DESA--SSLSEFQSLMS 250 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~--~~l--~~~~--~~~~~~~~l~~ 250 (468)
...+|+|.|.+|+||||+++.+.+. ....=.....++...-. +-...-..+. +.- +-.. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4679999999999999999988752 21110113334333211 2222222111 111 1122 45667777777
Q ss_pred HHHHHhCC
Q 043083 251 HIHRSIEG 258 (468)
Q Consensus 251 ~l~~~l~~ 258 (468)
.++.+.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 78777653
No 440
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.15 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|..|+|||||++.++..
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998753
No 441
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.039 Score=49.40 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=34.9
Q ss_pred ceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 154 EVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
++=|-+-.++++.+...-+-.. +-..++-|.++|++|+|||.||+.|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4556666667666655332211 1234677899999999999999999985
No 442
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.31 E-value=0.072 Score=52.78 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=51.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHHH---
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQS--- 247 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 247 (468)
.-..++|.|..|+|||||.+.+++... -+.++++-+++.. +..++....+..-+.. ..+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 345789999999999999999997422 2456777777654 3444444433221111 111111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEeccC
Q 043083 248 --LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 248 --l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
..-.+.+++ +++++|+++||+-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112234444 5899999999993
No 443
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.31 E-value=0.079 Score=53.30 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=49.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++....+ ..+... ++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 456899999999999999988876422 222347888765533 333222 344433211 1133444444443
Q ss_pred HHhCCCcEEEEEeccCC
Q 043083 254 RSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l~~k~~LlVlDdv~~ 270 (468)
+.+.-++|+|.+..
T Consensus 154 ---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 ---EEKPDLVVIDSIQT 167 (446)
T ss_pred ---hhCCCEEEEechhh
Confidence 23566899999853
No 444
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.14 Score=48.07 Aligned_cols=62 Identities=19% Similarity=0.089 Sum_probs=35.0
Q ss_pred HHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhhhCCCCeeeC
Q 043083 251 HIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMGSTNIIFI 313 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 313 (468)
.|.+.+-.++=+|+||+.-.. +......+...+.....+..||++|.+......+.. +.+.+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d-~i~~l 233 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD-WTAFF 233 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-EEEEE
Confidence 455555667789999987442 222333444444422234668888888766554332 34444
No 445
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.31 E-value=0.059 Score=49.81 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=48.6
Q ss_pred eEEEEEeecCCcchhHHH-HHHhcChhcccccCce-EEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHHH--
Q 043083 180 LYVISLVGLGGIGKTILA-QLAYNNDEVKRNFENV-IWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQS-- 247 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 247 (468)
-..++|.|.+|+|||+|| ..+.+. ..-+.+ +++-+++.. +..++...+...-... ..+.....+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 456899999999999996 556552 123343 666676654 4555665555432111 111111111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeccC
Q 043083 248 ---LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 248 ---l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
..-.+.+++ +++.+|+++||+-
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112233333 5899999999993
No 446
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.29 E-value=0.072 Score=52.01 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=30.0
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT 221 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 221 (468)
.++.|.|.+|.|||.||-.++....-.......++++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 47899999999999999888874311344555677766663
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.29 E-value=0.036 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEEeecCCcchhHHHHHHh
Q 043083 181 YVISLVGLGGIGKTILAQLAY 201 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~ 201 (468)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999877
No 448
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.28 E-value=0.15 Score=46.05 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=57.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC---CCh----hhHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA---SSL----SEFQSLMSH 251 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~----~~~~~l~~~ 251 (468)
..+++.|.|+.|.||||+.+.+....-.. +--+..|-. . .. ...+.+|+..++... ... .+..++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la-~~G~~v~a~--~-~~-~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMA-QIGSFVPAS--S-AT-LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH-hCCCEEEcC--c-eE-EeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998877521110 000111110 0 00 000111111111110 011 122233333
Q ss_pred HHHHhCCCcEEEEEeccCCCCc--c--C-hhhhHhhhcCCCCCcEEEEecCChhHHhhh
Q 043083 252 IHRSIEGKKFFLVLDDVWDGDY--N--K-WEPFFLYLKNGLHGSKILVTTRNESVAHMM 305 (468)
Q Consensus 252 l~~~l~~k~~LlVlDdv~~~~~--~--~-~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 305 (468)
+.. .+++.|++||....... + . ...+...+... .++.+|++|....++...
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 322 25789999999844321 1 1 11233333332 478899999998886544
No 449
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.28 E-value=0.12 Score=43.44 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999988875
No 450
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.28 E-value=0.013 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999763
No 451
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.27 E-value=0.079 Score=54.07 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC---------------CCh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA---------------SSL 242 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~~ 242 (468)
..-.++.|.|++|+|||||+.++.... ..+=..+++++..+ +..++.... +.++... +..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 356799999999999999998887632 22223467777665 444444443 3333211 111
Q ss_pred hhHHHHHHHHHHHhC-CCcEEEEEeccC
Q 043083 243 SEFQSLMSHIHRSIE-GKKFFLVLDDVW 269 (468)
Q Consensus 243 ~~~~~l~~~l~~~l~-~k~~LlVlDdv~ 269 (468)
...+.....+.+.+. .+.-++|+|.+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 223455555555553 345678889874
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.013 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+++|+|++|+|||||++.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999873
No 453
>PRK13947 shikimate kinase; Provisional
Probab=95.27 E-value=0.012 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999887
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.017 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999998875
No 455
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.26 E-value=0.016 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999873
No 456
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.25 E-value=0.016 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=19.7
Q ss_pred eEEEEEeecCCcchhHHHHHHh
Q 043083 180 LYVISLVGLGGIGKTILAQLAY 201 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~ 201 (468)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999876
No 457
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.25 E-value=0.15 Score=50.46 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.+|.++|+.|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977764
No 458
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.25 E-value=0.02 Score=55.02 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=67.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcc--ccc---CceEEEE-------eC----CCcCHHHHHHHHHH----------
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVK--RNF---ENVIWVC-------VS----DTFEEIRVAKAIIE---------- 233 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~F---~~~~wv~-------~~----~~~~~~~~~~~i~~---------- 233 (468)
.-++.|+|.+|+||||+.+.+....... +.| .+.+=+. +. ..++...++.++.+
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 3588999999999999999887632111 111 1121111 11 11222233333322
Q ss_pred ---hhccCCC--------ChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC--CCCCcEEEEecCCh
Q 043083 234 ---GLDESAS--------SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN--GLHGSKILVTTRNE 299 (468)
Q Consensus 234 ---~l~~~~~--------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 299 (468)
..+.... ..++-+.-..+|...+.++.-+++.|..... +...--.+...+.. ...|+.+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 2222110 1222333455778888888889999987431 11111112222322 12477788888888
Q ss_pred hHHhhhCCC
Q 043083 300 SVAHMMGST 308 (468)
Q Consensus 300 ~v~~~~~~~ 308 (468)
++.+.+.+.
T Consensus 569 Ev~~AL~PD 577 (593)
T COG2401 569 EVGNALRPD 577 (593)
T ss_pred HHHhccCCc
Confidence 887776554
No 459
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.25 E-value=0.1 Score=52.36 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred eEEEEEeecCCcchhHHH-HHHhcChhcc-----cccCceEEEEeCCCcCHHHHHHHHHHhhcc-CC-------CChhhH
Q 043083 180 LYVISLVGLGGIGKTILA-QLAYNNDEVK-----RNFENVIWVCVSDTFEEIRVAKAIIEGLDE-SA-------SSLSEF 245 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~~ 245 (468)
-..++|.|..|+|||+|| ..+.+...+. +.-..++++-+++..+.-.-+...++.-+. .. .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 446899999999999997 6666643221 233467888888865443334444443331 10 011111
Q ss_pred HH-----HHHHHHHHh--CCCcEEEEEeccC
Q 043083 246 QS-----LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 246 ~~-----l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
.+ ..-.+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11 112233333 5899999999994
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.25 E-value=0.07 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 469999999999999999888863
No 461
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.25 E-value=0.21 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.++++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 462
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.24 E-value=0.012 Score=50.60 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
|.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999988874
No 463
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.12 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+..-
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCC
Confidence 348999999999999999999863
No 464
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.22 E-value=0.14 Score=44.83 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...++.|.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988863
No 465
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.20 E-value=0.012 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998886
No 466
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.19 E-value=0.27 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999985
No 467
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=95.17 E-value=0.15 Score=46.00 Aligned_cols=48 Identities=25% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhhh
Q 043083 258 GKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMM 305 (468)
Q Consensus 258 ~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 305 (468)
+..-++||||+... +......+...+......+.+||||..+.+....
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44568999999653 2334555666666555678899999998887654
No 468
>PRK13949 shikimate kinase; Provisional
Probab=95.16 E-value=0.013 Score=50.51 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988873
No 469
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.16 E-value=0.024 Score=59.10 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|.++.++.|...+.. .+.+.|+|++|+||||+|+.+.+.. ...+++..+|...+. .+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHH
Confidence 4688988888877776642 1368899999999999999988731 223457788876644 36666666666
Q ss_pred Hhhc
Q 043083 233 EGLD 236 (468)
Q Consensus 233 ~~l~ 236 (468)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 5554
No 470
>PLN02924 thymidylate kinase
Probab=95.16 E-value=0.12 Score=46.69 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=23.2
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcCh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
.....|+|-|..|+||||+++.+.+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998743
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.16 E-value=0.083 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-..++|.|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4567999999999999999988863
No 472
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.018 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987776
No 473
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.15 E-value=0.1 Score=48.60 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhcc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDE 237 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 237 (468)
-.++.|-|.+|+|||++|..++.+...... ..++|++... +..++...++.....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm--~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLEM--SEEELAARLLARLSG 73 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS---HHHHHHHHHHHHHT
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCCC--CHHHHHHHHHHHhhc
Confidence 358889999999999999888875433322 4577777655 556677776666543
No 474
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.15 E-value=0.11 Score=51.52 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-cCHHHHHHHHHHhhccC-------CCChhhH-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-FEEIRVAKAIIEGLDES-------ASSLSEF----- 245 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 245 (468)
.-..++|+|..|+|||||.+.+.+... .+..+...++.. .+..++.......-... ..+....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999998886321 123334455543 33444544444331111 1111111
Q ss_pred HHHHHHHHHHh--CCCcEEEEEecc
Q 043083 246 QSLMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 246 ~~l~~~l~~~l--~~k~~LlVlDdv 268 (468)
....-.+.+++ +++++||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 11122334444 589999999999
No 475
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.14 E-value=0.035 Score=44.65 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.8
Q ss_pred ceeeccchHHHHH----HHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 154 EVCGRVDEKNELL----SKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 154 ~~vGR~~e~~~l~----~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|-.-..+.++ ..+... ...++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4566554444444 444333 3467889999999999999999877764
No 476
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.1 Score=52.14 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=47.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHh------hc-cCCCChhh-----HH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEG------LD-ESASSLSE-----FQ 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~------l~-~~~~~~~~-----~~ 246 (468)
....++|+|..|+|||||++.+..... .-..++++.--...+..++....+.. +. ....+... ..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 456899999999999999998886322 12234444333333444443332211 11 00111111 11
Q ss_pred HHHHHHHHHh--CCCcEEEEEecc
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv 268 (468)
...-.+.+++ +++++||++||+
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCh
Confidence 1222344444 589999999999
No 477
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.14 E-value=0.19 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|.|||||.+.+..-
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998873
No 478
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.13 E-value=0.06 Score=54.90 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++|+...+.++...+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 358998888888777664333 23345889999999999999998874
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.13 E-value=0.11 Score=47.22 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=29.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT 221 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 221 (468)
...++.|.|.+|+|||+++.+++... .+. =..++|++...+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-LKN-GEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhC-CCeEEEEECCCC
Confidence 46789999999999999998777531 122 234778877663
No 480
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.13 E-value=0.022 Score=62.00 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=91.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccc---cCceEEEEeCCC-----cCHH-HHHHHHHHhhccCCCChhhHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRN---FENVIWVCVSDT-----FEEI-RVAKAIIEGLDESASSLSEFQSLMS 250 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~wv~~~~~-----~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~ 250 (468)
..-+.|+|.+|+||||+.+.+.-.. ..+. =+..+++.+... +... .+...+...+...... .+...
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~----~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA----KQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc----chhhH
Confidence 3478999999999999998776431 1122 233445544311 1111 2222233333222221 11222
Q ss_pred HHHHHhCCCcEEEEEeccCCCCccCh----hhhHhhhcCCCCCcEEEEecCChhHHhhhCCCCeeeCCCCChHHHHHHHH
Q 043083 251 HIHRSIEGKKFFLVLDDVWDGDYNKW----EPFFLYLKNGLHGSKILVTTRNESVAHMMGSTNIIFIEQLAEEECCSLLE 326 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~~~~~~----~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 326 (468)
....+++..++|+.+|.++......- ..+...+ ..-+.+.+|+|+|....-........+++..+.++.......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 22567889999999999865322211 1122222 233578899999886554433334455666666665553333
Q ss_pred Hhh-----cCCCCCCCcc---chHHH---HHHHHHHcCCchHHHHHHHHHhc
Q 043083 327 RLA-----FFGRSFEDRE---KLEPM---GRKIAHKCKGLPVAAKVIGNLLR 367 (468)
Q Consensus 327 ~~a-----~~~~~~~~~~---~~~~~---~~~I~~~~~G~Plai~~~~~~L~ 367 (468)
... .......... ....+ ...-.+.....|+.+.+.+..-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 211 1110001111 11111 12233444888999988875444
No 481
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.12 E-value=0.014 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 482
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.11 E-value=0.097 Score=54.62 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=60.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhc-ccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC---hhhHHHHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEV-KRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS---LSEFQSLMSHIHRS 255 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~l~~~ 255 (468)
-++..|.|.+|.||||++..+...... ...-...+.+......-..++...+...+...... ......-..-+.++
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 358899999999999999887763111 11112356666665544455554443322111000 00000001122222
Q ss_pred hC------------CCc---EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH
Q 043083 256 IE------------GKK---FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA 302 (468)
Q Consensus 256 l~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 302 (468)
|. +.+ -++|+|...--+......+...+ .+++|+|+---..+..
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRDQLA 305 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchhhcC
Confidence 21 111 28999998443332333344443 4578888877665543
No 483
>PF13245 AAA_19: Part of AAA domain
Probab=95.10 E-value=0.035 Score=40.65 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=17.0
Q ss_pred eEEEEEeecCCcchhHHH-HHHhc
Q 043083 180 LYVISLVGLGGIGKTILA-QLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa-~~v~~ 202 (468)
.+++.|.|++|.|||+++ +.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999555 44444
No 484
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.09 E-value=0.051 Score=49.90 Aligned_cols=77 Identities=21% Similarity=0.114 Sum_probs=42.0
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc--CHHHHHHHHHHh----hccCC--CChhhHHHHHHHHH
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF--EEIRVAKAIIEG----LDESA--SSLSEFQSLMSHIH 253 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~--~~~~~~~~l~~~l~ 253 (468)
+|+|.|.+|+||||+++.+.... ...=..+..++...-. +-...-..+... ..-.. ++.-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999877632 1111113334332211 111222122221 12223 45667777888888
Q ss_pred HHhCCCc
Q 043083 254 RSIEGKK 260 (468)
Q Consensus 254 ~~l~~k~ 260 (468)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776554
No 485
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.43 Score=49.41 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=90.3
Q ss_pred ceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
++=|..+.++-+.+.+.-+... +-....-|.++|++|+|||-||..+..... .-++++..+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 3445555555555555444321 112234588999999999999998886311 224555443 2
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC-------c----cChhhhHhhhc--CCCCCcEEE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD-------Y----NKWEPFFLYLK--NGLHGSKIL 293 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-------~----~~~~~l~~~l~--~~~~gs~il 293 (468)
++..- ++. +.+.+.....+.-.-++|.|.||.++.-. . ...+++...+. .+-.|.-|+
T Consensus 737 lL~Ky---IGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSKY---IGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHH---hcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 22221 111 12333333444445799999999986511 1 12334444443 233465555
Q ss_pred E-ecCChhHHhh-hCC---CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH
Q 043083 294 V-TTRNESVAHM-MGS---TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV 357 (468)
Q Consensus 294 v-TtR~~~v~~~-~~~---~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 357 (468)
. |||..-+-.. +.+ .+.+.-+.-++.+-.++|+...-.- ......+ .+.++.++.|.--
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~vd----l~~~a~~T~g~tg 871 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDVD----LECLAQKTDGFTG 871 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCccccc----hHHHhhhcCCCch
Confidence 5 4454322111 111 2333344455666777777654211 1112222 3467777877643
No 486
>PLN02200 adenylate kinase family protein
Probab=95.08 E-value=0.018 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 487
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.07 E-value=0.089 Score=52.32 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=48.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-cCHHHHHHHHHHhhccC-------CCChhhH-----H
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-FEEIRVAKAIIEGLDES-------ASSLSEF-----Q 246 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 246 (468)
-..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-... ..+.... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999888632 1233333334433 24445544444332111 1111111 1
Q ss_pred HHHHHHHHHh--CCCcEEEEEeccC
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
...-.+.+++ +++++||++||+-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122344444 6899999999993
No 488
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.07 E-value=0.017 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
--+|+|+|++|+|||||.+.+.-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 489
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.07 E-value=0.06 Score=53.50 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=54.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC-------CCChhhHH----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES-------ASSLSEFQ---- 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 246 (468)
.-..++|.|.+|+|||+|+..+..... +.+-+.++++-++... +..++...+...-... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 345689999999999999988876422 2234677888887754 4455666555431111 11111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeccC
Q 043083 247 -SLMSHIHRSI---EGKKFFLVLDDVW 269 (468)
Q Consensus 247 -~l~~~l~~~l---~~k~~LlVlDdv~ 269 (468)
...-.+.+++ +++++||++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1223344555 4689999999993
No 490
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.05 E-value=0.1 Score=51.73 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=51.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCC-------CChh-----hHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESA-------SSLS-----EFQ 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~-----~~~ 246 (468)
.-..++|.|..|+|||||++.++.... ....++...-....+..+++...+..-+... .+.. ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 345789999999999999998887432 1222343322334566666665554422111 1111 112
Q ss_pred HHHHHHHHHh--CCCcEEEEEeccCC
Q 043083 247 SLMSHIHRSI--EGKKFFLVLDDVWD 270 (468)
Q Consensus 247 ~l~~~l~~~l--~~k~~LlVlDdv~~ 270 (468)
.....+.+++ ++++.||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 2223344444 58899999999944
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.04 E-value=0.19 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-..++|+|+.|+|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998763
No 492
>PRK14530 adenylate kinase; Provisional
Probab=95.04 E-value=0.015 Score=52.42 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 493
>PRK13409 putative ATPase RIL; Provisional
Probab=95.04 E-value=0.14 Score=53.50 Aligned_cols=134 Identities=18% Similarity=0.116 Sum_probs=67.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhc-cc--ccCc-eEEEEeC----CCcCHHHHH-------------HHHHHhhccC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEV-KR--NFEN-VIWVCVS----DTFEEIRVA-------------KAIIEGLDES 238 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-~~wv~~~----~~~~~~~~~-------------~~i~~~l~~~ 238 (468)
-.+++|+|+.|+|||||++.++..... .+ .++. +.++.-. ...++.+.+ .++++.++..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 458999999999999999999864211 11 1111 1111100 011222221 2233333221
Q ss_pred C------CChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC--CCCcEEEEecCChhHHhhhCCCC
Q 043083 239 A------SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG--LHGSKILVTTRNESVAHMMGSTN 309 (468)
Q Consensus 239 ~------~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~~ 309 (468)
. ...+.-+...-.+...|..++-+++||+--+. +...-..+...+... ..|..||++|.+...+..+.. +
T Consensus 445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD-r 523 (590)
T PRK13409 445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD-R 523 (590)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-E
Confidence 1 11222233334466667778889999986432 222223344444321 235568888888776654432 3
Q ss_pred eeeCC
Q 043083 310 IIFIE 314 (468)
Q Consensus 310 ~~~l~ 314 (468)
.+.+.
T Consensus 524 vivl~ 528 (590)
T PRK13409 524 LMVFE 528 (590)
T ss_pred EEEEc
Confidence 44443
No 494
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.25 Score=52.35 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+...
T Consensus 27 Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 495
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.02 E-value=0.017 Score=62.07 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++.|+|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999988764
No 496
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.31 Score=50.03 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=92.2
Q ss_pred CCceeeccchHH---HHHHHhhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 152 EGEVCGRVDEKN---ELLSKLLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 152 ~~~~vGR~~e~~---~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
-.+.-|.++.++ ++++.|..+..- +..-++=+.++|++|.|||.||+.+.....+- | .+.|.. +..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS-~FV 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS-DFV 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch-hhh
Confidence 346778776554 556666544321 12346778999999999999999999864432 2 111211 000
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC----------CccChhhhHhhh----cCCC--CC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG----------DYNKWEPFFLYL----KNGL--HG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~l----~~~~--~g 289 (468)
++.-.++ .....+...+..++-+++|++|.++.- ...++++....+ .... .|
T Consensus 221 ----emfVGvG--------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 221 ----EMFVGVG--------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ----hhhcCCC--------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 0000000 112233344444566899999988541 122344433333 2222 23
Q ss_pred cEEEEecCChhHHhh--h---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHH
Q 043083 290 SKILVTTRNESVAHM--M---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVA 358 (468)
Q Consensus 290 s~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 358 (468)
-.|+..|..++|... + .....+.++.-+-..-.+.++-++....- ...-++ ..|++.+-|.-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCH----HHHhhhCCCcccc
Confidence 334444444444321 1 12455666666656667777755532211 111222 2378888776443
No 497
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.99 E-value=0.013 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.4
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999988863
No 498
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.98 E-value=0.22 Score=50.99 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=63.0
Q ss_pred CeEEEEEeecCCcchhHH-HHHHhcChhccccc--CceEEEEeCCCcCHHHHHHHHHHhhccCCCC--------------
Q 043083 179 GLYVISLVGLGGIGKTIL-AQLAYNNDEVKRNF--ENVIWVCVSDTFEEIRVAKAIIEGLDESASS-------------- 241 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtL-a~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 241 (468)
...||.|+|..|+||||- ++.+|.+ .| .+.+=++-........+...+.+.++.....
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 356999999999999985 4666664 22 2233222222333445556666666433110
Q ss_pred ------hhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhc---CCCCCcEEEEecCChhH
Q 043083 242 ------LSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLK---NGLHGSKILVTTRNESV 301 (468)
Q Consensus 242 ------~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v 301 (468)
..+---+.+.|....-.|=..||+|..+.... +-+.+...+. .....-++||||-..+.
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 01111223333333334556899999976542 2233333332 23347799999987543
No 499
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.96 E-value=0.069 Score=47.46 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC---ChhhHHHHHHHHHH
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS---SLSEFQSLMSHIHR 254 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~ 254 (468)
..+.++.|.|.+|+||||++..+... .. ....+.++...--....-...+... ..... .......+...+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999988762 11 2345555433211110111111111 11111 01223445555566
Q ss_pred HhCCCcEEEEEeccCCCCccChhhhHhhhcC
Q 043083 255 SIEGKKFFLVLDDVWDGDYNKWEPFFLYLKN 285 (468)
Q Consensus 255 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 285 (468)
..-.+++=+|+|..-.. ......+...+..
T Consensus 88 ~a~~~~~nii~E~tl~~-~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSN-PSKLRKLIREAKA 117 (199)
T ss_dssp HHHHCT--EEEE--TTS-SHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEecCCCC-hhHHHHHHHHHHc
Confidence 65567777888887432 1223335555554
No 500
>PRK15115 response regulator GlrR; Provisional
Probab=94.96 E-value=0.081 Score=53.52 Aligned_cols=133 Identities=16% Similarity=0.112 Sum_probs=67.9
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH-HH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA-II 232 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~ 232 (468)
.++|....+.++.+....... ....|.|.|.+|+|||++|+.+.+...- .-...+.+++..- +. ..+.. +.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~-~~-~~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGAL-PE-QLLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCC-CH-HHHHHHhc
Confidence 467777777776665543221 2335779999999999999988874211 1112333333332 22 22222 11
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecCCh
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTRNE 299 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 299 (468)
....+....... . ...+ ......-.|+||++..........|...+..+. ...+||.||...
T Consensus 207 g~~~~~~~~~~~--~-~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 207 GHARGAFTGAVS--N-REGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCCcCCCCCCcc--C-CCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 110000000000 0 0000 001223478999998766656666777665332 145888888754
Done!