Query 043083
Match_columns 468
No_of_seqs 371 out of 2745
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-48 4.3E-53 401.9 20.8 283 156-462 131-449 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.4E-40 8.4E-45 346.0 16.9 268 154-459 129-420 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.9E-38 1.7E-42 354.4 22.0 280 149-460 120-428 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-34 3.7E-39 302.1 22.8 276 151-460 122-428 (591)
5 1w5s_A Origin recognition comp 99.7 1.9E-17 6.4E-22 164.3 16.3 302 152-460 21-372 (412)
6 2qen_A Walker-type ATPase; unk 99.7 4.7E-17 1.6E-21 157.6 15.5 276 151-459 10-333 (350)
7 3qfl_A MLA10; coiled-coil, (CC 99.7 2E-17 6.9E-22 131.5 8.3 80 5-89 2-83 (115)
8 2fna_A Conserved hypothetical 99.7 4.3E-16 1.5E-20 151.2 17.7 273 151-459 11-341 (357)
9 1fnn_A CDC6P, cell division co 99.5 9.7E-14 3.3E-18 136.3 17.5 298 153-461 17-353 (389)
10 2v1u_A Cell division control p 99.5 3.5E-13 1.2E-17 132.1 16.8 297 152-460 18-352 (387)
11 1njg_A DNA polymerase III subu 99.5 1.5E-12 5.1E-17 118.8 17.4 202 153-366 23-231 (250)
12 2qby_B CDC6 homolog 3, cell di 99.4 1.3E-12 4.3E-17 128.1 15.5 295 153-461 20-341 (384)
13 2qby_A CDC6 homolog 1, cell di 99.4 6.5E-13 2.2E-17 130.1 12.5 296 152-460 19-349 (386)
14 2chg_A Replication factor C sm 99.4 1.3E-11 4.5E-16 110.9 17.1 186 153-364 17-205 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.3 6.3E-12 2.2E-16 120.1 9.8 271 153-458 12-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.2 1.2E-10 4E-15 111.1 13.7 187 153-365 21-212 (323)
17 1iqp_A RFCS; clamp loader, ext 99.1 1E-09 3.6E-14 104.7 13.4 185 153-366 25-215 (327)
18 3te6_A Regulatory protein SIR3 99.0 3E-09 1E-13 99.9 13.8 172 154-330 21-212 (318)
19 1jr3_A DNA polymerase III subu 99.0 1.2E-08 4.1E-13 99.2 15.7 196 153-364 16-222 (373)
20 2chq_A Replication factor C sm 98.9 1.2E-08 4.2E-13 96.8 13.1 183 153-364 17-205 (319)
21 1jbk_A CLPB protein; beta barr 98.9 1.9E-08 6.6E-13 87.6 11.8 151 153-325 22-194 (195)
22 3pfi_A Holliday junction ATP-d 98.8 6.8E-08 2.3E-12 92.6 13.7 179 153-364 29-228 (338)
23 1sxj_D Activator 1 41 kDa subu 98.8 1.2E-07 4E-12 91.4 14.9 195 153-363 37-235 (353)
24 3bos_A Putative DNA replicatio 98.7 2.7E-08 9.2E-13 90.2 8.4 175 153-364 28-218 (242)
25 3pvs_A Replication-associated 98.7 2.9E-07 9.8E-12 91.2 16.1 179 153-363 26-215 (447)
26 2z4s_A Chromosomal replication 98.6 3.5E-07 1.2E-11 90.7 13.7 162 180-362 130-305 (440)
27 3h4m_A Proteasome-activating n 98.6 5.1E-07 1.7E-11 84.2 13.9 187 152-363 16-231 (285)
28 1a5t_A Delta prime, HOLB; zinc 98.6 1.1E-06 3.6E-11 84.0 16.4 96 258-362 107-204 (334)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.6E-06 5.6E-11 79.5 17.0 189 153-364 6-223 (262)
30 3uk6_A RUVB-like 2; hexameric 98.6 1.2E-06 4.1E-11 84.9 16.1 200 153-364 44-304 (368)
31 1sxj_E Activator 1 40 kDa subu 98.5 3E-07 1E-11 88.6 9.9 197 153-364 14-238 (354)
32 3u61_B DNA polymerase accessor 98.5 1E-06 3.5E-11 83.7 12.9 184 153-366 26-219 (324)
33 2p65_A Hypothetical protein PF 98.5 5.2E-07 1.8E-11 78.0 9.5 45 153-203 22-66 (187)
34 1sxj_A Activator 1 95 kDa subu 98.5 1.3E-06 4.6E-11 88.4 13.7 197 153-363 39-253 (516)
35 1l8q_A Chromosomal replication 98.4 3.5E-06 1.2E-10 80.1 15.2 157 180-360 37-205 (324)
36 3syl_A Protein CBBX; photosynt 98.4 2.4E-06 8.1E-11 80.6 13.4 161 154-330 32-218 (309)
37 1d2n_A N-ethylmaleimide-sensit 98.4 2.4E-06 8.2E-11 79.0 12.9 171 153-354 33-228 (272)
38 1sxj_C Activator 1 40 kDa subu 98.4 4.2E-06 1.4E-10 80.1 14.0 179 153-360 25-209 (340)
39 3n70_A Transport activator; si 98.3 5.3E-07 1.8E-11 74.9 6.1 115 154-299 2-116 (145)
40 3eie_A Vacuolar protein sortin 98.3 9.3E-06 3.2E-10 77.0 15.3 186 153-363 18-228 (322)
41 2qp9_X Vacuolar protein sortin 98.3 1.1E-05 3.7E-10 77.6 15.2 187 153-363 51-261 (355)
42 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.4E-05 8.1E-10 74.1 17.3 189 153-364 12-224 (322)
43 3ec2_A DNA replication protein 98.3 1.6E-06 5.3E-11 74.9 7.6 103 180-299 38-143 (180)
44 3d8b_A Fidgetin-like protein 1 98.3 1.9E-05 6.4E-10 76.0 15.9 188 153-364 84-296 (357)
45 2gno_A DNA polymerase III, gam 98.2 6.4E-06 2.2E-10 77.2 11.4 147 159-329 3-152 (305)
46 1qvr_A CLPB protein; coiled co 98.2 2.4E-06 8.4E-11 91.9 8.9 155 153-328 170-344 (854)
47 3b9p_A CG5977-PA, isoform A; A 98.2 3.6E-05 1.2E-09 72.0 15.5 186 153-364 21-234 (297)
48 2w58_A DNAI, primosome compone 98.2 1.5E-06 5.1E-11 76.5 5.6 119 161-299 37-159 (202)
49 3pxg_A Negative regulator of g 98.2 6.8E-06 2.3E-10 82.1 10.4 145 153-329 180-338 (468)
50 2zan_A Vacuolar protein sortin 98.1 9.1E-05 3.1E-09 73.3 18.0 188 153-363 134-345 (444)
51 3hu3_A Transitional endoplasmi 98.1 1.2E-05 4.2E-10 80.3 11.3 185 153-362 204-414 (489)
52 3cf0_A Transitional endoplasmi 98.1 4.4E-05 1.5E-09 71.6 14.4 181 153-358 15-223 (301)
53 3co5_A Putative two-component 98.1 1.7E-06 5.7E-11 71.6 4.0 110 154-298 5-115 (143)
54 3vfd_A Spastin; ATPase, microt 98.1 7E-05 2.4E-09 72.9 15.8 188 153-364 115-327 (389)
55 4fcw_A Chaperone protein CLPB; 98.1 1.1E-05 3.8E-10 76.0 9.8 136 154-298 18-169 (311)
56 2bjv_A PSP operon transcriptio 98.1 7.9E-06 2.7E-10 75.1 8.2 160 153-326 6-191 (265)
57 1in4_A RUVB, holliday junction 98.1 2.9E-05 9.9E-10 74.0 12.3 179 153-364 25-224 (334)
58 1ofh_A ATP-dependent HSL prote 98.0 8.4E-05 2.9E-09 69.7 14.2 153 153-327 15-213 (310)
59 4b4t_J 26S protease regulatory 98.0 0.00016 5.4E-09 69.6 16.0 179 153-356 148-354 (405)
60 1ojl_A Transcriptional regulat 98.0 7.7E-06 2.6E-10 76.8 6.6 160 153-327 2-188 (304)
61 4b4t_K 26S protease regulatory 98.0 5.9E-05 2E-09 73.6 12.8 178 153-355 172-378 (428)
62 4b4t_L 26S protease subunit RP 98.0 0.00013 4.3E-09 71.4 15.0 179 153-356 181-387 (437)
63 3pxi_A Negative regulator of g 97.9 3.7E-05 1.2E-09 81.7 10.1 149 153-329 180-338 (758)
64 1r6b_X CLPA protein; AAA+, N-t 97.9 8.6E-05 2.9E-09 78.9 12.5 157 153-329 186-362 (758)
65 2c9o_A RUVB-like 1; hexameric 97.9 8.2E-05 2.8E-09 74.0 11.6 100 261-364 297-411 (456)
66 2kjq_A DNAA-related protein; s 97.8 1.1E-05 3.6E-10 67.2 4.3 87 180-298 36-124 (149)
67 2ce7_A Cell division protein F 97.8 0.00017 5.9E-09 71.5 13.7 179 153-356 16-221 (476)
68 1lv7_A FTSH; alpha/beta domain 97.8 0.00023 8E-09 64.8 13.6 185 153-362 12-224 (257)
69 4b4t_M 26S protease regulatory 97.8 9.6E-05 3.3E-09 72.1 11.2 178 153-355 181-386 (434)
70 4b4t_H 26S protease regulatory 97.8 0.00055 1.9E-08 66.8 16.3 178 154-356 210-415 (467)
71 4b4t_I 26S protease regulatory 97.8 0.00047 1.6E-08 66.6 14.6 177 154-355 183-387 (437)
72 3pxi_A Negative regulator of g 97.7 3.8E-05 1.3E-09 81.6 7.2 156 153-329 491-675 (758)
73 2r62_A Cell division protease 97.7 2.9E-05 1E-09 71.4 4.7 158 153-330 11-197 (268)
74 3cf2_A TER ATPase, transitiona 97.7 0.00021 7.1E-09 75.1 11.6 179 153-356 204-407 (806)
75 3t15_A Ribulose bisphosphate c 97.6 0.0007 2.4E-08 63.0 12.7 26 178-203 34-59 (293)
76 2r44_A Uncharacterized protein 97.5 0.00019 6.6E-09 68.1 8.3 151 154-330 28-199 (331)
77 3m6a_A ATP-dependent protease 97.5 0.00021 7.1E-09 72.6 8.9 161 154-329 82-266 (543)
78 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00018 6.3E-09 76.4 8.7 164 153-329 458-666 (758)
79 1qvr_A CLPB protein; coiled co 97.5 0.00025 8.5E-09 76.3 9.5 135 154-298 559-710 (854)
80 2qgz_A Helicase loader, putati 97.4 0.0001 3.5E-09 69.1 4.0 40 161-203 136-175 (308)
81 2cvh_A DNA repair and recombin 97.4 0.00098 3.4E-08 58.9 10.3 86 179-270 19-116 (220)
82 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00011 3.8E-09 68.3 3.5 69 180-270 123-193 (331)
83 1n0w_A DNA repair protein RAD5 97.3 0.00088 3E-08 60.2 9.3 90 180-270 24-130 (243)
84 2x8a_A Nuclear valosin-contain 97.3 0.005 1.7E-07 56.5 14.3 126 183-329 47-191 (274)
85 1ypw_A Transitional endoplasmi 97.3 0.0011 3.8E-08 70.5 11.1 157 153-329 204-385 (806)
86 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.0022 7.7E-08 64.0 12.5 42 154-203 23-64 (500)
87 1g8p_A Magnesium-chelatase 38 97.2 0.0028 9.7E-08 60.3 11.9 44 153-202 24-67 (350)
88 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0089 3E-07 59.6 15.7 175 153-356 31-236 (499)
89 1ixz_A ATP-dependent metallopr 97.1 0.0023 7.8E-08 58.0 9.9 149 183-356 52-221 (254)
90 2b8t_A Thymidine kinase; deoxy 97.1 0.00046 1.6E-08 61.1 4.9 114 179-300 11-127 (223)
91 1jr3_D DNA polymerase III, del 97.1 0.011 3.9E-07 56.0 14.8 158 179-362 17-184 (343)
92 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0015 5.1E-08 58.2 8.0 115 180-299 23-168 (235)
93 1ye8_A Protein THEP1, hypothet 97.0 0.0031 1E-07 53.8 9.5 22 182-203 2-23 (178)
94 1um8_A ATP-dependent CLP prote 97.0 0.0034 1.2E-07 60.6 10.9 23 180-202 72-94 (376)
95 1g5t_A COB(I)alamin adenosyltr 97.0 0.0016 5.3E-08 56.1 7.4 116 181-300 29-164 (196)
96 3hr8_A Protein RECA; alpha and 97.0 0.0019 6.6E-08 61.4 8.5 85 179-270 60-150 (356)
97 1iy2_A ATP-dependent metallopr 97.0 0.0043 1.5E-07 57.1 10.8 179 153-356 40-245 (278)
98 1xp8_A RECA protein, recombina 96.8 0.0033 1.1E-07 60.2 8.7 84 180-270 74-163 (366)
99 2i1q_A DNA repair and recombin 96.8 0.004 1.4E-07 58.6 9.3 90 179-269 97-214 (322)
100 3io5_A Recombination and repai 96.8 0.004 1.4E-07 57.7 8.8 82 182-270 30-122 (333)
101 1v5w_A DMC1, meiotic recombina 96.8 0.005 1.7E-07 58.5 9.9 90 179-269 121-229 (343)
102 2z43_A DNA repair and recombin 96.8 0.0048 1.7E-07 58.2 9.6 89 180-269 107-213 (324)
103 2zr9_A Protein RECA, recombina 96.7 0.0041 1.4E-07 59.2 8.6 85 179-270 60-150 (349)
104 1rz3_A Hypothetical protein rb 96.6 0.0016 5.6E-08 56.7 4.9 42 158-202 3-44 (201)
105 1u94_A RECA protein, recombina 96.5 0.0057 1.9E-07 58.3 7.8 85 179-270 62-152 (356)
106 1cr0_A DNA primase/helicase; R 96.4 0.0074 2.5E-07 56.0 8.1 39 180-219 35-73 (296)
107 2pze_A Cystic fibrosis transme 96.4 0.027 9.1E-07 50.1 11.1 24 180-203 34-57 (229)
108 2cbz_A Multidrug resistance-as 96.4 0.015 5E-07 52.1 9.4 24 180-203 31-54 (237)
109 2px0_A Flagellar biosynthesis 96.3 0.008 2.8E-07 55.7 7.7 86 179-267 104-190 (296)
110 3lda_A DNA repair protein RAD5 96.3 0.015 5.2E-07 56.2 9.7 91 179-270 177-284 (400)
111 1mv5_A LMRA, multidrug resista 96.3 0.018 6.2E-07 51.7 9.5 23 180-202 28-50 (243)
112 4a74_A DNA repair and recombin 96.2 0.026 8.9E-07 49.8 10.4 46 179-224 24-73 (231)
113 1pzn_A RAD51, DNA repair and r 96.2 0.019 6.5E-07 54.6 9.7 91 179-270 130-242 (349)
114 3ice_A Transcription terminati 96.2 0.0052 1.8E-07 58.4 5.3 52 164-222 163-216 (422)
115 3tqc_A Pantothenate kinase; bi 96.2 0.011 3.6E-07 55.4 7.5 45 156-202 70-114 (321)
116 3c8u_A Fructokinase; YP_612366 96.1 0.0041 1.4E-07 54.5 4.4 37 162-202 8-44 (208)
117 3bh0_A DNAB-like replicative h 96.1 0.018 6.3E-07 53.9 9.0 50 179-232 67-116 (315)
118 1zp6_A Hypothetical protein AT 96.0 0.0035 1.2E-07 53.9 3.4 25 179-203 8-32 (191)
119 1qhx_A CPT, protein (chloramph 96.0 0.0028 9.4E-08 53.9 2.5 22 181-202 4-25 (178)
120 3kb2_A SPBC2 prophage-derived 96.0 0.0028 9.7E-08 53.4 2.6 22 181-202 2-23 (173)
121 3lw7_A Adenylate kinase relate 96.0 0.0031 1.1E-07 53.2 2.8 20 181-200 2-21 (179)
122 1gvn_B Zeta; postsegregational 96.0 0.0063 2.1E-07 56.3 5.0 40 162-202 16-55 (287)
123 1ly1_A Polynucleotide kinase; 96.0 0.0034 1.2E-07 53.4 3.0 22 181-202 3-24 (181)
124 3cf2_A TER ATPase, transitiona 95.9 0.025 8.7E-07 59.5 9.8 157 153-329 477-661 (806)
125 3tui_C Methionine import ATP-b 95.9 0.022 7.6E-07 54.1 8.6 61 246-306 168-231 (366)
126 3vaa_A Shikimate kinase, SK; s 95.9 0.0036 1.2E-07 54.4 2.7 23 180-202 25-47 (199)
127 3uie_A Adenylyl-sulfate kinase 95.9 0.0049 1.7E-07 53.6 3.6 25 179-203 24-48 (200)
128 1odf_A YGR205W, hypothetical 3 95.9 0.005 1.7E-07 56.9 3.8 26 178-203 29-54 (290)
129 4a1f_A DNAB helicase, replicat 95.8 0.023 7.9E-07 53.5 8.2 49 180-232 46-94 (338)
130 2rhm_A Putative kinase; P-loop 95.8 0.0055 1.9E-07 52.7 3.6 24 179-202 4-27 (193)
131 1sky_E F1-ATPase, F1-ATP synth 95.8 0.022 7.6E-07 55.8 8.1 88 182-270 153-256 (473)
132 2orw_A Thymidine kinase; TMTK, 95.8 0.00066 2.3E-08 58.4 -2.4 40 257-299 74-113 (184)
133 1kgd_A CASK, peripheral plasma 95.8 0.0046 1.6E-07 52.8 3.0 23 180-202 5-27 (180)
134 2p5t_B PEZT; postsegregational 95.8 0.0079 2.7E-07 54.4 4.7 39 163-202 16-54 (253)
135 1vma_A Cell division protein F 95.7 0.042 1.5E-06 51.0 9.6 26 178-203 102-127 (306)
136 3jvv_A Twitching mobility prot 95.7 0.004 1.4E-07 59.4 2.6 111 181-303 124-235 (356)
137 1ex7_A Guanylate kinase; subst 95.7 0.004 1.4E-07 53.3 2.3 22 181-202 2-23 (186)
138 1kag_A SKI, shikimate kinase I 95.7 0.0041 1.4E-07 52.5 2.4 22 181-202 5-26 (173)
139 1knq_A Gluconate kinase; ALFA/ 95.7 0.0064 2.2E-07 51.5 3.6 24 179-202 7-30 (175)
140 3trf_A Shikimate kinase, SK; a 95.7 0.0046 1.6E-07 52.9 2.5 23 180-202 5-27 (185)
141 3asz_A Uridine kinase; cytidin 95.7 0.0061 2.1E-07 53.4 3.4 24 179-202 5-28 (211)
142 4gp7_A Metallophosphoesterase; 95.6 0.0051 1.8E-07 52.0 2.7 24 179-202 8-31 (171)
143 1nks_A Adenylate kinase; therm 95.6 0.0058 2E-07 52.5 3.1 22 181-202 2-23 (194)
144 4eun_A Thermoresistant glucoki 95.6 0.0057 1.9E-07 53.2 2.9 24 179-202 28-51 (200)
145 3tr0_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 53.0 3.0 23 180-202 7-29 (205)
146 3tau_A Guanylate kinase, GMP k 95.5 0.0063 2.1E-07 53.3 3.0 25 179-203 7-31 (208)
147 3t61_A Gluconokinase; PSI-biol 95.5 0.0046 1.6E-07 53.8 2.1 23 180-202 18-40 (202)
148 1uf9_A TT1252 protein; P-loop, 95.5 0.0075 2.6E-07 52.3 3.3 25 178-202 6-30 (203)
149 3a00_A Guanylate kinase, GMP k 95.5 0.0052 1.8E-07 52.7 2.2 22 181-202 2-23 (186)
150 3upu_A ATP-dependent DNA helic 95.5 0.01 3.6E-07 58.8 4.7 22 182-203 47-68 (459)
151 2qt1_A Nicotinamide riboside k 95.5 0.0087 3E-07 52.2 3.6 24 179-202 20-43 (207)
152 1ukz_A Uridylate kinase; trans 95.5 0.0082 2.8E-07 52.2 3.4 25 178-202 13-37 (203)
153 3dm5_A SRP54, signal recogniti 95.5 0.13 4.5E-06 50.1 12.2 24 179-202 99-122 (443)
154 2bdt_A BH3686; alpha-beta prot 95.4 0.0078 2.7E-07 51.7 3.2 22 181-202 3-24 (189)
155 1tev_A UMP-CMP kinase; ploop, 95.4 0.0072 2.5E-07 52.0 3.0 23 180-202 3-25 (196)
156 3kl4_A SRP54, signal recogniti 95.4 0.083 2.8E-06 51.4 10.7 24 179-202 96-119 (433)
157 1kht_A Adenylate kinase; phosp 95.4 0.0069 2.4E-07 51.9 2.8 22 181-202 4-25 (192)
158 2j41_A Guanylate kinase; GMP, 95.4 0.0074 2.5E-07 52.5 3.0 24 180-203 6-29 (207)
159 1y63_A LMAJ004144AAA protein; 95.4 0.0077 2.6E-07 51.6 3.0 24 179-202 9-32 (184)
160 2qor_A Guanylate kinase; phosp 95.4 0.0059 2E-07 53.3 2.2 24 179-202 11-34 (204)
161 2c95_A Adenylate kinase 1; tra 95.4 0.0075 2.6E-07 52.0 2.8 24 179-202 8-31 (196)
162 3iij_A Coilin-interacting nucl 95.4 0.0059 2E-07 52.0 2.1 23 180-202 11-33 (180)
163 3hws_A ATP-dependent CLP prote 95.4 0.0086 2.9E-07 57.4 3.5 49 154-202 16-73 (363)
164 3cm0_A Adenylate kinase; ATP-b 95.4 0.009 3.1E-07 51.0 3.3 23 180-202 4-26 (186)
165 1jjv_A Dephospho-COA kinase; P 95.3 0.0092 3.1E-07 52.0 3.3 22 181-202 3-24 (206)
166 2ze6_A Isopentenyl transferase 95.3 0.0082 2.8E-07 54.4 3.0 22 181-202 2-23 (253)
167 1zuh_A Shikimate kinase; alpha 95.3 0.0073 2.5E-07 50.7 2.5 24 179-202 6-29 (168)
168 3umf_A Adenylate kinase; rossm 95.3 0.0094 3.2E-07 52.4 3.2 25 178-202 27-51 (217)
169 1qf9_A UMP/CMP kinase, protein 95.3 0.011 3.6E-07 50.8 3.6 24 179-202 5-28 (194)
170 2jaq_A Deoxyguanosine kinase; 95.3 0.0081 2.8E-07 52.1 2.8 21 182-202 2-22 (205)
171 2if2_A Dephospho-COA kinase; a 95.3 0.0085 2.9E-07 52.1 2.9 21 182-202 3-23 (204)
172 1lvg_A Guanylate kinase, GMP k 95.3 0.0067 2.3E-07 52.7 2.2 23 180-202 4-26 (198)
173 2cdn_A Adenylate kinase; phosp 95.2 0.0093 3.2E-07 51.8 3.0 24 179-202 19-42 (201)
174 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.0092 3.1E-07 54.3 3.1 23 180-202 4-26 (260)
175 2yvu_A Probable adenylyl-sulfa 95.2 0.011 3.8E-07 50.6 3.5 25 179-203 12-36 (186)
176 1cke_A CK, MSSA, protein (cyti 95.2 0.0083 2.8E-07 53.1 2.7 22 181-202 6-27 (227)
177 2r2a_A Uncharacterized protein 95.2 0.019 6.3E-07 49.8 4.8 21 180-200 5-25 (199)
178 2bbw_A Adenylate kinase 4, AK4 95.2 0.0088 3E-07 53.8 2.9 23 180-202 27-49 (246)
179 2yhs_A FTSY, cell division pro 95.2 0.058 2E-06 53.2 8.8 42 179-223 292-333 (503)
180 2vli_A Antibiotic resistance p 95.2 0.0068 2.3E-07 51.6 1.9 23 180-202 5-27 (183)
181 2plr_A DTMP kinase, probable t 95.2 0.01 3.5E-07 51.8 3.1 23 180-202 4-26 (213)
182 2bwj_A Adenylate kinase 5; pho 95.2 0.0088 3E-07 51.7 2.6 23 180-202 12-34 (199)
183 1uj2_A Uridine-cytidine kinase 95.1 0.01 3.5E-07 53.7 3.1 25 178-202 20-44 (252)
184 1via_A Shikimate kinase; struc 95.1 0.009 3.1E-07 50.6 2.5 21 182-202 6-26 (175)
185 2iyv_A Shikimate kinase, SK; t 95.1 0.0069 2.3E-07 51.7 1.7 21 182-202 4-24 (184)
186 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.6E-07 51.7 2.9 23 180-202 20-42 (207)
187 3e70_C DPA, signal recognition 95.1 0.075 2.6E-06 49.9 8.9 24 179-202 128-151 (328)
188 3aez_A Pantothenate kinase; tr 95.1 0.012 4.1E-07 55.0 3.4 25 178-202 88-112 (312)
189 3ney_A 55 kDa erythrocyte memb 95.1 0.011 3.8E-07 51.1 2.9 24 179-202 18-41 (197)
190 2pez_A Bifunctional 3'-phospho 95.0 0.012 4.2E-07 49.9 3.1 24 179-202 4-27 (179)
191 1htw_A HI0065; nucleotide-bind 95.0 0.015 5E-07 48.4 3.5 24 179-202 32-55 (158)
192 1e6c_A Shikimate kinase; phosp 95.0 0.0081 2.8E-07 50.6 1.9 22 181-202 3-24 (173)
193 2jeo_A Uridine-cytidine kinase 95.0 0.013 4.4E-07 52.7 3.4 24 179-202 24-47 (245)
194 2r6a_A DNAB helicase, replicat 95.0 0.075 2.6E-06 52.5 9.2 50 179-231 202-251 (454)
195 3hjn_A DTMP kinase, thymidylat 95.0 0.067 2.3E-06 46.2 7.8 49 182-232 2-50 (197)
196 2wwf_A Thymidilate kinase, put 95.0 0.012 4.2E-07 51.3 3.1 24 179-202 9-32 (212)
197 2xxa_A Signal recognition part 95.0 0.12 4E-06 50.6 10.3 25 178-202 98-122 (433)
198 1xjc_A MOBB protein homolog; s 95.0 0.012 4E-07 49.5 2.7 24 179-202 3-26 (169)
199 1nn5_A Similar to deoxythymidy 95.0 0.012 4E-07 51.6 2.9 23 180-202 9-31 (215)
200 2pt5_A Shikimate kinase, SK; a 95.0 0.012 3.9E-07 49.4 2.7 21 182-202 2-22 (168)
201 2grj_A Dephospho-COA kinase; T 95.0 0.015 5E-07 50.2 3.4 25 178-202 10-34 (192)
202 1aky_A Adenylate kinase; ATP:A 94.9 0.011 3.8E-07 52.1 2.7 23 180-202 4-26 (220)
203 1q57_A DNA primase/helicase; d 94.9 0.1 3.5E-06 52.3 10.1 51 179-232 241-291 (503)
204 2pbr_A DTMP kinase, thymidylat 94.9 0.012 4.1E-07 50.5 2.8 21 182-202 2-22 (195)
205 2ga8_A Hypothetical 39.9 kDa p 94.9 0.02 6.7E-07 54.1 4.3 41 160-202 6-46 (359)
206 2z0h_A DTMP kinase, thymidylat 94.9 0.035 1.2E-06 47.7 5.7 21 182-202 2-22 (197)
207 1z6g_A Guanylate kinase; struc 94.9 0.01 3.5E-07 52.3 2.3 23 180-202 23-45 (218)
208 1gtv_A TMK, thymidylate kinase 94.9 0.0085 2.9E-07 52.5 1.7 22 182-203 2-23 (214)
209 2f6r_A COA synthase, bifunctio 94.9 0.016 5.6E-07 53.2 3.7 24 178-201 73-96 (281)
210 1s96_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 51.7 2.9 24 179-202 15-38 (219)
211 1zd8_A GTP:AMP phosphotransfer 94.8 0.012 4.2E-07 52.1 2.7 23 180-202 7-29 (227)
212 2q6t_A DNAB replication FORK h 94.8 0.077 2.6E-06 52.2 8.7 52 179-233 199-250 (444)
213 1rj9_A FTSY, signal recognitio 94.8 0.014 4.7E-07 54.4 3.0 24 179-202 101-124 (304)
214 3cmu_A Protein RECA, recombina 94.8 0.043 1.5E-06 63.0 7.5 84 179-269 1426-1515(2050)
215 1sq5_A Pantothenate kinase; P- 94.8 0.028 9.5E-07 52.4 5.1 24 179-202 79-102 (308)
216 4e22_A Cytidylate kinase; P-lo 94.8 0.014 4.8E-07 52.8 2.9 23 180-202 27-49 (252)
217 1fx0_B ATP synthase beta chain 94.8 0.087 3E-06 51.8 8.6 99 164-268 154-275 (498)
218 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.039 1.3E-06 52.0 6.0 106 181-301 172-277 (330)
219 2f1r_A Molybdopterin-guanine d 94.7 0.011 3.9E-07 49.8 2.0 22 181-202 3-24 (171)
220 3be4_A Adenylate kinase; malar 94.7 0.014 4.7E-07 51.4 2.7 23 180-202 5-27 (217)
221 3llm_A ATP-dependent RNA helic 94.7 0.099 3.4E-06 46.4 8.4 89 181-270 77-187 (235)
222 1zak_A Adenylate kinase; ATP:A 94.7 0.012 4.2E-07 51.9 2.3 23 180-202 5-27 (222)
223 2zts_A Putative uncharacterize 94.7 0.062 2.1E-06 48.0 7.1 49 180-231 30-78 (251)
224 3tlx_A Adenylate kinase 2; str 94.7 0.017 5.8E-07 51.9 3.2 24 179-202 28-51 (243)
225 1m7g_A Adenylylsulfate kinase; 94.7 0.018 6E-07 50.5 3.3 24 179-202 24-47 (211)
226 2ffh_A Protein (FFH); SRP54, s 94.7 0.11 3.9E-06 50.4 9.2 23 180-202 98-120 (425)
227 2v54_A DTMP kinase, thymidylat 94.7 0.014 4.9E-07 50.5 2.7 24 180-203 4-27 (204)
228 3fwy_A Light-independent proto 94.7 0.017 5.8E-07 54.0 3.3 25 178-202 46-70 (314)
229 3fb4_A Adenylate kinase; psych 94.7 0.015 5.1E-07 51.0 2.7 21 182-202 2-22 (216)
230 3b5x_A Lipid A export ATP-bind 94.6 0.13 4.5E-06 52.5 10.1 23 180-202 369-391 (582)
231 1vht_A Dephospho-COA kinase; s 94.6 0.018 6.3E-07 50.6 3.2 23 180-202 4-26 (218)
232 2j37_W Signal recognition part 94.6 0.23 7.7E-06 49.5 11.2 25 178-202 99-123 (504)
233 3tif_A Uncharacterized ABC tra 94.5 0.017 5.7E-07 51.6 2.8 23 180-202 31-53 (235)
234 2pcj_A ABC transporter, lipopr 94.5 0.018 6E-07 51.1 2.9 22 181-202 31-52 (224)
235 3dl0_A Adenylate kinase; phosp 94.5 0.017 5.7E-07 50.7 2.7 21 182-202 2-22 (216)
236 2ehv_A Hypothetical protein PH 94.5 0.018 6E-07 51.7 2.9 23 180-202 30-52 (251)
237 2ged_A SR-beta, signal recogni 94.5 0.026 8.8E-07 48.3 3.8 25 179-203 47-71 (193)
238 1zu4_A FTSY; GTPase, signal re 94.5 0.13 4.3E-06 48.2 8.8 24 179-202 104-127 (320)
239 3b85_A Phosphate starvation-in 94.5 0.017 5.9E-07 50.4 2.7 22 181-202 23-44 (208)
240 4edh_A DTMP kinase, thymidylat 94.5 0.16 5.4E-06 44.4 8.9 24 180-203 6-29 (213)
241 1j8m_F SRP54, signal recogniti 94.4 0.13 4.6E-06 47.4 8.8 23 180-202 98-120 (297)
242 1tf7_A KAIC; homohexamer, hexa 94.4 0.029 9.9E-07 56.6 4.5 25 179-203 280-304 (525)
243 2onk_A Molybdate/tungstate ABC 94.4 0.019 6.5E-07 51.4 2.8 22 181-202 25-46 (240)
244 3b9q_A Chloroplast SRP recepto 94.4 0.023 7.8E-07 52.8 3.5 24 179-202 99-122 (302)
245 2ck3_D ATP synthase subunit be 94.4 0.16 5.3E-06 49.8 9.3 65 164-234 142-207 (482)
246 2i3b_A HCR-ntpase, human cance 94.4 0.017 5.8E-07 49.6 2.4 22 182-203 3-24 (189)
247 3l0o_A Transcription terminati 94.4 0.022 7.5E-07 54.1 3.2 53 163-221 163-216 (427)
248 3lnc_A Guanylate kinase, GMP k 94.3 0.014 4.8E-07 51.9 1.8 23 180-202 27-50 (231)
249 2hf9_A Probable hydrogenase ni 94.3 0.024 8.1E-07 50.0 3.3 25 179-203 37-61 (226)
250 2qe7_A ATP synthase subunit al 94.3 0.098 3.3E-06 51.5 7.8 96 164-268 151-263 (502)
251 3gfo_A Cobalt import ATP-bindi 94.2 0.021 7.2E-07 52.2 2.8 22 181-202 35-56 (275)
252 1b0u_A Histidine permease; ABC 94.2 0.022 7.4E-07 51.8 2.8 23 180-202 32-54 (262)
253 3nwj_A ATSK2; P loop, shikimat 94.2 0.017 5.7E-07 52.1 2.0 22 181-202 49-70 (250)
254 1tue_A Replication protein E1; 94.2 0.034 1.2E-06 48.0 3.7 24 180-203 58-81 (212)
255 2r9v_A ATP synthase subunit al 94.1 0.083 2.8E-06 52.0 6.9 96 164-268 164-276 (515)
256 2vp4_A Deoxynucleoside kinase; 94.1 0.025 8.7E-07 50.2 3.0 25 178-202 18-42 (230)
257 3ake_A Cytidylate kinase; CMP 94.1 0.023 8E-07 49.3 2.7 21 182-202 4-24 (208)
258 1e4v_A Adenylate kinase; trans 94.1 0.025 8.4E-07 49.6 2.9 21 182-202 2-22 (214)
259 1np6_A Molybdopterin-guanine d 94.1 0.023 7.8E-07 48.1 2.6 25 179-203 5-29 (174)
260 1ji0_A ABC transporter; ATP bi 94.1 0.024 8.1E-07 50.8 2.8 22 181-202 33-54 (240)
261 4g1u_C Hemin import ATP-bindin 94.1 0.024 8.1E-07 51.7 2.8 23 180-202 37-59 (266)
262 1g6h_A High-affinity branched- 94.1 0.024 8.2E-07 51.4 2.8 23 180-202 33-55 (257)
263 4akg_A Glutathione S-transfera 94.1 0.29 9.8E-06 58.3 12.3 138 181-329 1268-1431(2695)
264 2xb4_A Adenylate kinase; ATP-b 94.0 0.024 8.3E-07 50.1 2.8 21 182-202 2-22 (223)
265 3sr0_A Adenylate kinase; phosp 94.0 0.025 8.5E-07 49.3 2.7 21 182-202 2-22 (206)
266 3e1s_A Exodeoxyribonuclease V, 94.0 0.067 2.3E-06 54.4 6.3 23 181-203 205-227 (574)
267 2olj_A Amino acid ABC transpor 94.0 0.025 8.5E-07 51.4 2.8 23 180-202 50-72 (263)
268 2d2e_A SUFC protein; ABC-ATPas 94.0 0.027 9.1E-07 50.8 2.9 22 181-202 30-51 (250)
269 1sgw_A Putative ABC transporte 94.0 0.021 7.3E-07 50.1 2.2 23 181-203 36-58 (214)
270 2fz4_A DNA repair protein RAD2 94.0 0.18 6E-06 44.9 8.4 104 183-297 111-227 (237)
271 3r20_A Cytidylate kinase; stru 94.0 0.028 9.4E-07 50.0 2.9 23 180-202 9-31 (233)
272 1ak2_A Adenylate kinase isoenz 94.0 0.026 8.7E-07 50.3 2.8 23 180-202 16-38 (233)
273 2ff7_A Alpha-hemolysin translo 94.0 0.026 8.8E-07 50.8 2.8 22 181-202 36-57 (247)
274 2wsm_A Hydrogenase expression/ 94.0 0.03 1E-06 49.1 3.2 25 179-203 29-53 (221)
275 2wji_A Ferrous iron transport 93.9 0.037 1.2E-06 46.1 3.5 23 181-203 4-26 (165)
276 1ny5_A Transcriptional regulat 93.9 0.48 1.6E-05 45.5 11.9 45 154-202 138-182 (387)
277 3cmu_A Protein RECA, recombina 93.9 0.088 3E-06 60.6 7.5 85 179-270 382-472 (2050)
278 1oix_A RAS-related protein RAB 93.9 0.036 1.2E-06 47.5 3.6 24 180-203 29-52 (191)
279 2og2_A Putative signal recogni 93.9 0.032 1.1E-06 53.0 3.4 24 179-202 156-179 (359)
280 2zu0_C Probable ATP-dependent 93.9 0.028 9.7E-07 51.2 2.9 24 180-203 46-69 (267)
281 4hlc_A DTMP kinase, thymidylat 93.9 0.15 5.1E-06 44.3 7.5 23 181-203 3-25 (205)
282 1vpl_A ABC transporter, ATP-bi 93.9 0.027 9.3E-07 50.9 2.8 23 180-202 41-63 (256)
283 1a7j_A Phosphoribulokinase; tr 93.9 0.017 5.8E-07 53.4 1.4 24 179-202 4-27 (290)
284 2zej_A Dardarin, leucine-rich 93.9 0.026 9E-07 48.0 2.6 22 182-203 4-25 (184)
285 1ltq_A Polynucleotide kinase; 93.9 0.028 9.6E-07 52.1 3.0 22 181-202 3-24 (301)
286 3a8t_A Adenylate isopentenyltr 93.9 0.034 1.2E-06 52.1 3.5 25 179-203 39-63 (339)
287 3cmw_A Protein RECA, recombina 93.9 0.079 2.7E-06 60.1 6.9 85 179-270 382-472 (1706)
288 3p32_A Probable GTPase RV1496/ 93.9 0.047 1.6E-06 52.0 4.5 37 162-202 65-101 (355)
289 4eaq_A DTMP kinase, thymidylat 93.9 0.061 2.1E-06 47.7 5.0 25 179-203 25-49 (229)
290 3zvl_A Bifunctional polynucleo 93.8 0.028 9.7E-07 54.8 3.0 25 178-202 256-280 (416)
291 3d3q_A TRNA delta(2)-isopenten 93.8 0.03 1E-06 52.6 3.0 22 181-202 8-29 (340)
292 2ixe_A Antigen peptide transpo 93.8 0.028 9.6E-07 51.3 2.8 54 250-303 165-221 (271)
293 2ghi_A Transport protein; mult 93.8 0.029 9.8E-07 50.9 2.8 23 180-202 46-68 (260)
294 2qi9_C Vitamin B12 import ATP- 93.8 0.029 1E-06 50.5 2.8 23 181-203 27-49 (249)
295 2dr3_A UPF0273 protein PH0284; 93.7 0.051 1.7E-06 48.5 4.4 39 180-220 23-61 (247)
296 2iw3_A Elongation factor 3A; a 93.7 0.32 1.1E-05 52.2 11.0 122 181-306 462-612 (986)
297 2nq2_C Hypothetical ABC transp 93.7 0.031 1.1E-06 50.4 2.8 23 181-203 32-54 (253)
298 3crm_A TRNA delta(2)-isopenten 93.7 0.032 1.1E-06 52.0 3.0 23 180-202 5-27 (323)
299 2eyu_A Twitching motility prot 93.7 0.037 1.3E-06 50.2 3.4 110 179-302 24-136 (261)
300 2yz2_A Putative ABC transporte 93.7 0.031 1E-06 50.9 2.8 23 180-202 33-55 (266)
301 2ihy_A ABC transporter, ATP-bi 93.7 0.031 1.1E-06 51.2 2.8 23 180-202 47-69 (279)
302 3vr4_D V-type sodium ATPase su 93.6 0.067 2.3E-06 52.0 5.1 100 164-268 140-257 (465)
303 1yrb_A ATP(GTP)binding protein 93.6 0.044 1.5E-06 49.5 3.7 25 178-202 12-36 (262)
304 3exa_A TRNA delta(2)-isopenten 93.6 0.036 1.2E-06 51.3 3.1 23 180-202 3-25 (322)
305 3foz_A TRNA delta(2)-isopenten 93.6 0.039 1.3E-06 50.9 3.3 24 179-202 9-32 (316)
306 2dyk_A GTP-binding protein; GT 93.6 0.039 1.3E-06 45.4 3.1 23 181-203 2-24 (161)
307 2v9p_A Replication protein E1; 93.6 0.035 1.2E-06 51.4 3.0 24 179-202 125-148 (305)
308 3v9p_A DTMP kinase, thymidylat 93.6 0.1 3.4E-06 46.1 5.8 24 180-203 25-48 (227)
309 2wjg_A FEOB, ferrous iron tran 93.6 0.053 1.8E-06 46.0 4.0 25 179-203 6-30 (188)
310 3dzd_A Transcriptional regulat 93.5 0.044 1.5E-06 52.5 3.7 47 153-203 129-175 (368)
311 3gqb_B V-type ATP synthase bet 93.5 0.067 2.3E-06 52.0 4.8 100 164-268 136-260 (464)
312 4tmk_A Protein (thymidylate ki 93.5 0.27 9.3E-06 42.9 8.4 52 181-233 4-55 (213)
313 1fx0_A ATP synthase alpha chai 93.5 0.084 2.9E-06 52.0 5.5 83 180-268 163-264 (507)
314 2f9l_A RAB11B, member RAS onco 93.4 0.035 1.2E-06 47.8 2.7 24 180-203 5-28 (199)
315 1g41_A Heat shock protein HSLU 93.4 0.055 1.9E-06 52.9 4.2 50 153-202 15-72 (444)
316 3sop_A Neuronal-specific septi 93.4 0.041 1.4E-06 50.2 3.1 21 182-202 4-24 (270)
317 2c61_A A-type ATP synthase non 93.4 0.075 2.6E-06 52.0 5.0 100 164-268 141-258 (469)
318 3bgw_A DNAB-like replicative h 93.4 0.23 7.9E-06 48.7 8.6 50 179-232 196-245 (444)
319 1nlf_A Regulatory protein REPA 93.4 0.041 1.4E-06 50.4 3.1 120 180-301 30-183 (279)
320 2qmh_A HPR kinase/phosphorylas 93.3 0.047 1.6E-06 46.9 3.1 23 181-203 35-57 (205)
321 2v3c_C SRP54, signal recogniti 93.3 0.058 2E-06 52.7 4.2 25 179-203 98-122 (432)
322 1nij_A Hypothetical protein YJ 93.3 0.048 1.6E-06 51.1 3.4 25 179-203 3-27 (318)
323 1q3t_A Cytidylate kinase; nucl 93.3 0.041 1.4E-06 49.0 2.8 25 178-202 14-38 (236)
324 2pjz_A Hypothetical protein ST 93.2 0.041 1.4E-06 50.0 2.8 22 181-202 31-52 (263)
325 3nh6_A ATP-binding cassette SU 93.2 0.036 1.2E-06 51.5 2.4 23 180-202 80-102 (306)
326 2lkc_A Translation initiation 93.2 0.058 2E-06 45.2 3.6 25 179-203 7-31 (178)
327 2ce2_X GTPase HRAS; signaling 93.2 0.044 1.5E-06 45.1 2.8 22 182-203 5-26 (166)
328 3fvq_A Fe(3+) IONS import ATP- 93.2 0.045 1.5E-06 51.9 3.1 22 181-202 31-52 (359)
329 2ocp_A DGK, deoxyguanosine kin 93.2 0.049 1.7E-06 48.6 3.2 23 180-202 2-24 (241)
330 3ld9_A DTMP kinase, thymidylat 93.1 0.12 4.1E-06 45.4 5.6 26 178-203 19-44 (223)
331 3k1j_A LON protease, ATP-depen 93.1 0.046 1.6E-06 56.2 3.3 43 153-203 41-83 (604)
332 3oaa_A ATP synthase subunit al 93.1 0.19 6.6E-06 49.3 7.4 97 164-269 151-264 (513)
333 2xau_A PRE-mRNA-splicing facto 93.1 0.58 2E-05 49.4 11.7 90 181-270 110-219 (773)
334 2ck3_A ATP synthase subunit al 93.0 0.18 6.3E-06 49.6 7.2 101 164-269 151-272 (510)
335 1svi_A GTP-binding protein YSX 93.0 0.063 2.2E-06 45.8 3.6 25 179-203 22-46 (195)
336 2bbs_A Cystic fibrosis transme 93.0 0.048 1.6E-06 50.3 2.9 24 180-203 64-87 (290)
337 3kta_A Chromosome segregation 93.0 0.055 1.9E-06 45.9 3.1 21 182-202 28-48 (182)
338 3vkw_A Replicase large subunit 93.0 0.28 9.5E-06 47.7 8.3 26 177-202 158-183 (446)
339 1svm_A Large T antigen; AAA+ f 92.9 0.049 1.7E-06 52.2 3.0 24 179-202 168-191 (377)
340 1z2a_A RAS-related protein RAB 92.9 0.06 2.1E-06 44.5 3.2 24 180-203 5-28 (168)
341 3lv8_A DTMP kinase, thymidylat 92.9 0.12 4.1E-06 45.9 5.3 38 180-218 27-64 (236)
342 3qf4_A ABC transporter, ATP-bi 92.9 0.21 7.2E-06 51.0 7.8 23 180-202 369-391 (587)
343 3q72_A GTP-binding protein RAD 92.9 0.048 1.6E-06 45.1 2.6 22 182-203 4-25 (166)
344 2nzj_A GTP-binding protein REM 92.9 0.07 2.4E-06 44.5 3.6 24 180-203 4-27 (175)
345 2j9r_A Thymidine kinase; TK1, 92.9 0.12 4.1E-06 45.0 5.1 111 179-300 27-139 (214)
346 3q85_A GTP-binding protein REM 92.8 0.07 2.4E-06 44.2 3.5 22 181-202 3-24 (169)
347 1fzq_A ADP-ribosylation factor 92.8 0.072 2.5E-06 45.0 3.6 25 179-203 15-39 (181)
348 2fn4_A P23, RAS-related protei 92.8 0.085 2.9E-06 44.2 4.0 25 179-203 8-32 (181)
349 2gj8_A MNME, tRNA modification 92.8 0.069 2.4E-06 44.8 3.4 23 181-203 5-27 (172)
350 2aka_B Dynamin-1; fusion prote 92.7 0.12 4E-06 47.7 5.3 41 163-203 9-49 (299)
351 2erx_A GTP-binding protein DI- 92.7 0.055 1.9E-06 44.9 2.8 23 181-203 4-26 (172)
352 1z47_A CYSA, putative ABC-tran 92.7 0.055 1.9E-06 51.3 2.9 22 181-202 42-63 (355)
353 1ls1_A Signal recognition part 92.7 0.062 2.1E-06 49.7 3.3 24 180-203 98-121 (295)
354 1u8z_A RAS-related protein RAL 92.6 0.056 1.9E-06 44.6 2.6 24 180-203 4-27 (168)
355 3rlf_A Maltose/maltodextrin im 92.6 0.057 2E-06 51.6 2.9 23 180-202 29-51 (381)
356 3pqc_A Probable GTP-binding pr 92.6 0.072 2.5E-06 45.3 3.4 25 179-203 22-46 (195)
357 3con_A GTPase NRAS; structural 92.6 0.053 1.8E-06 46.1 2.5 23 181-203 22-44 (190)
358 1z08_A RAS-related protein RAB 92.6 0.081 2.8E-06 43.8 3.6 25 179-203 5-29 (170)
359 2cxx_A Probable GTP-binding pr 92.6 0.063 2.2E-06 45.5 3.0 22 182-203 3-24 (190)
360 3mfy_A V-type ATP synthase alp 92.6 0.36 1.2E-05 48.0 8.5 59 164-231 216-275 (588)
361 3thx_A DNA mismatch repair pro 92.5 0.17 5.7E-06 54.4 6.7 22 179-200 661-682 (934)
362 2yyz_A Sugar ABC transporter, 92.5 0.06 2E-06 51.2 2.9 23 180-202 29-51 (359)
363 1c1y_A RAS-related protein RAP 92.5 0.056 1.9E-06 44.6 2.5 23 181-203 4-26 (167)
364 1kao_A RAP2A; GTP-binding prot 92.5 0.057 1.9E-06 44.5 2.5 23 181-203 4-26 (167)
365 2hxs_A RAB-26, RAS-related pro 92.5 0.096 3.3E-06 43.8 4.0 25 179-203 5-29 (178)
366 1ek0_A Protein (GTP-binding pr 92.5 0.06 2E-06 44.6 2.6 22 182-203 5-26 (170)
367 2it1_A 362AA long hypothetical 92.5 0.061 2.1E-06 51.2 2.9 23 180-202 29-51 (362)
368 1ky3_A GTP-binding protein YPT 92.5 0.079 2.7E-06 44.4 3.4 25 179-203 7-31 (182)
369 1nrj_B SR-beta, signal recogni 92.5 0.064 2.2E-06 46.8 2.9 25 179-203 11-35 (218)
370 1z0j_A RAB-22, RAS-related pro 92.4 0.061 2.1E-06 44.6 2.6 24 180-203 6-29 (170)
371 2yv5_A YJEQ protein; hydrolase 92.4 0.082 2.8E-06 49.0 3.7 31 162-201 156-186 (302)
372 3ihw_A Centg3; RAS, centaurin, 92.4 0.061 2.1E-06 45.7 2.7 24 180-203 20-43 (184)
373 3d31_A Sulfate/molybdate ABC t 92.4 0.055 1.9E-06 51.2 2.5 125 181-305 27-194 (348)
374 1p5z_B DCK, deoxycytidine kina 92.4 0.044 1.5E-06 49.7 1.8 24 179-202 23-46 (263)
375 1g16_A RAS-related protein SEC 92.4 0.066 2.3E-06 44.3 2.8 23 181-203 4-26 (170)
376 1m7b_A RND3/RHOE small GTP-bin 92.4 0.086 2.9E-06 44.6 3.5 25 179-203 6-30 (184)
377 1g29_1 MALK, maltose transport 92.4 0.064 2.2E-06 51.3 2.9 22 181-202 30-51 (372)
378 4bas_A ADP-ribosylation factor 92.4 0.08 2.7E-06 45.3 3.3 26 178-203 15-40 (199)
379 1r8s_A ADP-ribosylation factor 92.3 0.061 2.1E-06 44.3 2.5 20 183-202 3-22 (164)
380 2www_A Methylmalonic aciduria 92.3 0.076 2.6E-06 50.4 3.4 24 179-202 73-96 (349)
381 1v43_A Sugar-binding transport 92.3 0.065 2.2E-06 51.2 2.9 23 180-202 37-59 (372)
382 3end_A Light-independent proto 92.3 0.075 2.6E-06 49.4 3.3 25 178-202 39-63 (307)
383 1lw7_A Transcriptional regulat 92.2 0.07 2.4E-06 51.0 3.1 23 180-202 170-192 (365)
384 1f6b_A SAR1; gtpases, N-termin 92.2 0.084 2.9E-06 45.4 3.3 23 181-203 26-48 (198)
385 3vr4_A V-type sodium ATPase ca 92.2 0.47 1.6E-05 47.4 8.9 59 164-231 221-280 (600)
386 2iwr_A Centaurin gamma 1; ANK 92.2 0.057 1.9E-06 45.3 2.2 24 180-203 7-30 (178)
387 1pui_A ENGB, probable GTP-bind 92.2 0.047 1.6E-06 47.4 1.7 25 179-203 25-49 (210)
388 3cmw_A Protein RECA, recombina 92.2 0.19 6.7E-06 57.0 6.9 83 179-268 1430-1518(1706)
389 3eph_A TRNA isopentenyltransfe 92.2 0.075 2.6E-06 51.0 3.2 22 181-202 3-24 (409)
390 3iev_A GTP-binding protein ERA 92.2 0.087 3E-06 49.0 3.6 27 177-203 7-33 (308)
391 1oxx_K GLCV, glucose, ABC tran 92.2 0.052 1.8E-06 51.5 2.1 23 180-202 31-53 (353)
392 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.083 2.8E-06 44.2 3.2 25 179-203 6-30 (177)
393 3tw8_B RAS-related protein RAB 92.2 0.099 3.4E-06 43.8 3.7 25 179-203 8-32 (181)
394 3c5c_A RAS-like protein 12; GD 92.2 0.068 2.3E-06 45.5 2.6 24 180-203 21-44 (187)
395 2qm8_A GTPase/ATPase; G protei 92.2 0.08 2.7E-06 50.0 3.4 24 179-202 54-77 (337)
396 1m2o_B GTP-binding protein SAR 92.1 0.069 2.3E-06 45.6 2.6 23 181-203 24-46 (190)
397 2ew1_A RAS-related protein RAB 92.1 0.094 3.2E-06 45.3 3.5 25 179-203 25-49 (201)
398 2bme_A RAB4A, RAS-related prot 92.0 0.076 2.6E-06 44.9 2.8 25 179-203 9-33 (186)
399 1r2q_A RAS-related protein RAB 92.0 0.07 2.4E-06 44.2 2.5 24 180-203 6-29 (170)
400 2y8e_A RAB-protein 6, GH09086P 92.0 0.077 2.6E-06 44.4 2.8 23 181-203 15-37 (179)
401 2cjw_A GTP-binding protein GEM 92.0 0.074 2.5E-06 45.5 2.7 23 180-202 6-28 (192)
402 2axn_A 6-phosphofructo-2-kinas 92.0 0.078 2.7E-06 53.2 3.2 24 179-202 34-57 (520)
403 3gd7_A Fusion complex of cysti 92.0 0.078 2.7E-06 51.0 3.1 23 180-202 47-69 (390)
404 3t5g_A GTP-binding protein RHE 92.0 0.094 3.2E-06 44.1 3.3 25 179-203 5-29 (181)
405 3llu_A RAS-related GTP-binding 91.9 0.083 2.8E-06 45.3 2.9 24 180-203 20-43 (196)
406 3t1o_A Gliding protein MGLA; G 91.9 0.071 2.4E-06 45.4 2.5 24 179-202 13-36 (198)
407 4dsu_A GTPase KRAS, isoform 2B 91.9 0.076 2.6E-06 44.9 2.6 24 180-203 4-27 (189)
408 1xx6_A Thymidine kinase; NESG, 91.9 0.04 1.4E-06 47.3 0.8 110 180-300 8-119 (191)
409 3k53_A Ferrous iron transport 91.9 0.11 3.6E-06 47.4 3.7 24 180-203 3-26 (271)
410 1z0f_A RAB14, member RAS oncog 91.9 0.1 3.4E-06 43.6 3.3 25 179-203 14-38 (179)
411 2qnr_A Septin-2, protein NEDD5 91.8 0.077 2.6E-06 49.2 2.7 21 182-202 20-40 (301)
412 3cbq_A GTP-binding protein REM 91.8 0.084 2.9E-06 45.3 2.8 24 179-202 22-45 (195)
413 1upt_A ARL1, ADP-ribosylation 91.8 0.1 3.4E-06 43.3 3.3 25 179-203 6-30 (171)
414 2ewv_A Twitching motility prot 91.8 0.091 3.1E-06 50.3 3.3 107 179-302 135-247 (372)
415 3bc1_A RAS-related protein RAB 91.8 0.11 3.6E-06 44.1 3.4 25 179-203 10-34 (195)
416 3kkq_A RAS-related protein M-R 91.8 0.12 4.2E-06 43.4 3.8 25 179-203 17-41 (183)
417 1u0j_A DNA replication protein 91.7 0.15 5.1E-06 46.0 4.4 34 165-202 93-126 (267)
418 2oil_A CATX-8, RAS-related pro 91.7 0.11 3.7E-06 44.3 3.4 25 179-203 24-48 (193)
419 1mh1_A RAC1; GTP-binding, GTPa 91.7 0.082 2.8E-06 44.5 2.6 24 180-203 5-28 (186)
420 1u0l_A Probable GTPase ENGC; p 91.7 0.11 3.7E-06 48.2 3.6 33 162-203 160-192 (301)
421 1g8f_A Sulfate adenylyltransfe 91.7 0.091 3.1E-06 52.3 3.2 26 178-203 393-418 (511)
422 2afh_E Nitrogenase iron protei 91.7 0.1 3.5E-06 48.0 3.4 23 180-202 2-24 (289)
423 2qu8_A Putative nucleolar GTP- 91.7 0.1 3.6E-06 45.9 3.4 25 179-203 28-52 (228)
424 1gwn_A RHO-related GTP-binding 91.7 0.087 3E-06 45.7 2.8 25 179-203 27-51 (205)
425 1ega_A Protein (GTP-binding pr 91.7 0.098 3.4E-06 48.5 3.3 25 179-203 7-31 (301)
426 2a9k_A RAS-related protein RAL 91.6 0.085 2.9E-06 44.5 2.6 24 180-203 18-41 (187)
427 1m8p_A Sulfate adenylyltransfe 91.6 0.16 5.4E-06 51.6 5.0 25 178-202 394-418 (573)
428 2efe_B Small GTP-binding prote 91.6 0.085 2.9E-06 44.3 2.6 25 179-203 11-35 (181)
429 3bwd_D RAC-like GTP-binding pr 91.6 0.086 2.9E-06 44.3 2.6 23 181-203 9-31 (182)
430 2r8r_A Sensor protein; KDPD, P 91.6 0.26 8.9E-06 43.2 5.7 105 181-299 7-127 (228)
431 2bov_A RAla, RAS-related prote 91.6 0.12 4.1E-06 44.4 3.6 25 179-203 13-37 (206)
432 3lxx_A GTPase IMAP family memb 91.6 0.11 3.8E-06 46.2 3.5 25 179-203 28-52 (239)
433 2h92_A Cytidylate kinase; ross 91.6 0.071 2.4E-06 46.7 2.2 22 181-202 4-25 (219)
434 3cr8_A Sulfate adenylyltranfer 91.6 0.086 3E-06 53.2 3.0 24 179-202 368-391 (552)
435 2atv_A RERG, RAS-like estrogen 91.5 0.087 3E-06 45.1 2.6 24 180-203 28-51 (196)
436 2fg5_A RAB-22B, RAS-related pr 91.5 0.091 3.1E-06 44.8 2.8 24 180-203 23-46 (192)
437 1w36_D RECD, exodeoxyribonucle 91.5 0.2 7E-06 51.3 5.8 42 181-222 165-207 (608)
438 1zbd_A Rabphilin-3A; G protein 91.5 0.093 3.2E-06 45.1 2.8 25 179-203 7-31 (203)
439 1moz_A ARL1, ADP-ribosylation 91.5 0.098 3.3E-06 44.0 2.9 25 179-203 17-41 (183)
440 4dkx_A RAS-related protein RAB 91.5 0.089 3E-06 46.1 2.6 22 182-203 15-36 (216)
441 3dz8_A RAS-related protein RAB 91.5 0.09 3.1E-06 44.8 2.6 24 180-203 23-46 (191)
442 3oes_A GTPase rhebl1; small GT 91.5 0.089 3E-06 45.3 2.6 25 179-203 23-47 (201)
443 2g6b_A RAS-related protein RAB 91.5 0.087 3E-06 44.2 2.5 25 179-203 9-33 (180)
444 1ksh_A ARF-like protein 2; sma 91.5 0.094 3.2E-06 44.3 2.7 26 179-204 17-42 (186)
445 2h17_A ADP-ribosylation factor 91.5 0.098 3.3E-06 44.1 2.8 24 180-203 21-44 (181)
446 2o52_A RAS-related protein RAB 91.4 0.1 3.4E-06 45.0 2.9 25 179-203 24-48 (200)
447 2gza_A Type IV secretion syste 91.4 0.086 2.9E-06 50.3 2.6 22 181-202 176-197 (361)
448 4f4c_A Multidrug resistance pr 91.4 0.66 2.3E-05 52.1 10.1 24 180-203 444-467 (1321)
449 1cp2_A CP2, nitrogenase iron p 91.4 0.11 3.8E-06 47.1 3.3 22 181-202 2-23 (269)
450 2p67_A LAO/AO transport system 91.4 0.12 4E-06 49.0 3.5 25 178-202 54-78 (341)
451 3tkl_A RAS-related protein RAB 91.4 0.15 5E-06 43.4 3.9 25 179-203 15-39 (196)
452 3iby_A Ferrous iron transport 91.4 0.11 3.7E-06 46.9 3.2 23 181-203 2-24 (256)
453 1vg8_A RAS-related protein RAB 91.3 0.12 4.2E-06 44.5 3.4 25 179-203 7-31 (207)
454 3gmt_A Adenylate kinase; ssgci 91.3 0.091 3.1E-06 46.4 2.5 23 180-202 8-30 (230)
455 2q3h_A RAS homolog gene family 91.3 0.099 3.4E-06 44.9 2.8 24 180-203 20-43 (201)
456 2fh5_B SR-beta, signal recogni 91.3 0.095 3.3E-06 45.5 2.6 25 179-203 6-30 (214)
457 1zd9_A ADP-ribosylation factor 91.3 0.093 3.2E-06 44.6 2.5 24 180-203 22-45 (188)
458 3b1v_A Ferrous iron uptake tra 91.3 0.14 4.7E-06 46.7 3.8 24 180-203 3-26 (272)
459 2j1l_A RHO-related GTP-binding 91.3 0.11 3.6E-06 45.4 2.9 25 179-203 33-57 (214)
460 2gf9_A RAS-related protein RAB 91.3 0.098 3.3E-06 44.4 2.6 24 180-203 22-45 (189)
461 2gf0_A GTP-binding protein DI- 91.2 0.13 4.5E-06 43.9 3.5 25 179-203 7-31 (199)
462 3reg_A RHO-like small GTPase; 91.2 0.099 3.4E-06 44.6 2.6 25 179-203 22-46 (194)
463 1jwy_B Dynamin A GTPase domain 91.2 0.21 7.1E-06 46.4 5.1 26 178-203 22-47 (315)
464 1zj6_A ADP-ribosylation factor 91.2 0.15 5.1E-06 43.1 3.8 25 179-203 15-39 (187)
465 3fdi_A Uncharacterized protein 91.2 0.11 3.9E-06 44.9 3.0 23 180-202 6-28 (201)
466 2g3y_A GTP-binding protein GEM 91.2 0.14 4.9E-06 44.6 3.6 24 179-202 36-59 (211)
467 3a1s_A Iron(II) transport prot 91.1 0.14 4.6E-06 46.3 3.5 25 179-203 4-28 (258)
468 2b6h_A ADP-ribosylation factor 91.1 0.14 4.7E-06 43.8 3.4 24 180-203 29-52 (192)
469 3f9v_A Minichromosome maintena 91.1 0.058 2E-06 55.2 1.1 22 182-203 329-350 (595)
470 2obl_A ESCN; ATPase, hydrolase 91.1 0.11 3.6E-06 49.3 2.9 24 180-203 71-94 (347)
471 2il1_A RAB12; G-protein, GDP, 91.1 0.098 3.4E-06 44.7 2.5 24 180-203 26-49 (192)
472 1tq4_A IIGP1, interferon-induc 91.1 0.13 4.4E-06 49.8 3.5 24 179-202 68-91 (413)
473 1bif_A 6-phosphofructo-2-kinas 91.0 0.11 3.7E-06 51.5 3.1 25 179-203 38-62 (469)
474 2rcn_A Probable GTPase ENGC; Y 91.0 0.11 3.8E-06 49.2 2.9 23 181-203 216-238 (358)
475 2bcg_Y Protein YP2, GTP-bindin 91.0 0.11 3.7E-06 44.8 2.8 25 179-203 7-31 (206)
476 4gzl_A RAS-related C3 botulinu 91.0 0.13 4.5E-06 44.4 3.3 24 180-203 30-53 (204)
477 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.14 4.7E-06 42.0 3.2 22 181-202 24-45 (149)
478 1z06_A RAS-related protein RAB 91.0 0.13 4.6E-06 43.5 3.2 25 179-203 19-43 (189)
479 1x3s_A RAS-related protein RAB 90.9 0.11 3.8E-06 44.2 2.6 24 180-203 15-38 (195)
480 3clv_A RAB5 protein, putative; 90.9 0.15 5.1E-06 43.6 3.5 24 180-203 7-30 (208)
481 3ch4_B Pmkase, phosphomevalona 90.9 0.15 5.1E-06 43.9 3.4 24 179-202 10-33 (202)
482 2qag_B Septin-6, protein NEDD5 90.9 0.11 3.7E-06 50.5 2.7 22 182-203 44-65 (427)
483 2a5j_A RAS-related protein RAB 90.8 0.15 5.3E-06 43.3 3.5 24 180-203 21-44 (191)
484 2atx_A Small GTP binding prote 90.8 0.12 4.1E-06 44.0 2.8 24 180-203 18-41 (194)
485 2h57_A ADP-ribosylation factor 90.8 0.095 3.3E-06 44.6 2.1 25 180-204 21-45 (190)
486 2hup_A RAS-related protein RAB 90.8 0.12 4.2E-06 44.5 2.8 25 179-203 28-52 (201)
487 3tqf_A HPR(Ser) kinase; transf 90.7 0.15 5.3E-06 42.5 3.2 22 181-202 17-38 (181)
488 1x6v_B Bifunctional 3'-phospho 90.7 0.14 4.7E-06 52.3 3.5 24 179-202 51-74 (630)
489 4dhe_A Probable GTP-binding pr 90.7 0.1 3.5E-06 45.6 2.3 26 179-204 28-53 (223)
490 2fv8_A H6, RHO-related GTP-bin 90.7 0.12 4E-06 44.8 2.6 24 180-203 25-48 (207)
491 2j0v_A RAC-like GTP-binding pr 90.6 0.13 4.3E-06 44.7 2.8 25 179-203 8-32 (212)
492 1ypw_A Transitional endoplasmi 90.6 0.11 3.9E-06 55.1 2.9 51 153-203 477-534 (806)
493 2p5s_A RAS and EF-hand domain 90.6 0.14 4.8E-06 43.9 3.0 25 179-203 27-51 (199)
494 2gco_A H9, RHO-related GTP-bin 90.6 0.13 4.4E-06 44.3 2.8 24 180-203 25-48 (201)
495 2xtp_A GTPase IMAP family memb 90.6 0.16 5.4E-06 45.8 3.5 25 179-203 21-45 (260)
496 2npi_A Protein CLP1; CLP1-PCF1 90.6 0.1 3.5E-06 51.4 2.3 24 180-203 138-161 (460)
497 2fu5_C RAS-related protein RAB 90.5 0.079 2.7E-06 44.7 1.3 25 179-203 7-31 (183)
498 1c9k_A COBU, adenosylcobinamid 90.5 0.14 4.7E-06 43.3 2.7 21 183-203 2-22 (180)
499 3cph_A RAS-related protein SEC 90.4 0.13 4.3E-06 44.6 2.6 24 180-203 20-43 (213)
500 1wf3_A GTP-binding protein; GT 90.4 0.18 6.1E-06 46.7 3.7 25 179-203 6-30 (301)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-48 Score=401.91 Aligned_cols=283 Identities=19% Similarity=0.277 Sum_probs=234.0
Q ss_pred eeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc--ChhcccccCceEEEEeCCCc--CHHHHHHHH
Q 043083 156 CGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN--NDEVKRNFENVIWVCVSDTF--EEIRVAKAI 231 (468)
Q Consensus 156 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 231 (468)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 24689999999999999999999998 67899999999999999975 889999999
Q ss_pred HHhhccCCC-------ChhhHHHHHHHHHHHhCCC-cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 232 IEGLDESAS-------SLSEFQSLMSHIHRSIEGK-KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 232 ~~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
+.+++.... ...+...+...+.+.|.++ |+||||||+|+.+...|.. .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986522 1234567888999999996 9999999999853222221 16999999999999998
Q ss_pred hhCC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCcccccc------
Q 043083 304 MMGS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMWKV------ 376 (468)
Q Consensus 304 ~~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~------ 376 (468)
.++. ...|+|++|+.+++|+||.+.++... ..+.+.+++.+|+++|+|+||||+++|+.|+.+. |+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~~~l~~ 353 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKMAQLNN 353 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHHHHhHH
Confidence 7763 46799999999999999999987542 2467788999999999999999999999998763 432
Q ss_pred ---cccCCCchhhHhhccccCCChhhhhHHHh-----------hhcCCCCCCccCHHHHHHHHHHc--CCCCCCC-CCCH
Q 043083 377 ---QEIGQGLLTPLLLSYNDLPSNSMVKRCFS-----------YCTVFPKDCNMDKEELINLWMAQ--DYLNAEE-DEEM 439 (468)
Q Consensus 377 ---~~~~~~~~~~l~~sy~~L~~~~~~k~cf~-----------~ls~fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~ 439 (468)
.....++..+|.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.++
T Consensus 354 ~l~~~~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESRGLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHHCSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred HhhcccHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 11356788999999999998 9999999 999999999999 8999999 9998866 6778
Q ss_pred HHHHHHHHHHHHHCCCccccccC
Q 043083 440 EMIGEEYFNILAARSFFQEFKKD 462 (468)
Q Consensus 440 e~~~~~~~~~Lv~r~l~q~~~~~ 462 (468)
+++++ ||++|+++||+|+...+
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~ 449 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM 449 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS
T ss_pred HHHHH-HHHHHHHcCCeeEecCC
Confidence 88888 99999999999987654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-40 Score=346.02 Aligned_cols=268 Identities=21% Similarity=0.227 Sum_probs=214.5
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~ 232 (468)
..+||+.++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 3689999999999999999999987788899987 99999999999888888877
Q ss_pred HhhccCC-------C----ChhhHHHHHHHHHHHh---CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC
Q 043083 233 EGLDESA-------S----SLSEFQSLMSHIHRSI---EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 233 ~~l~~~~-------~----~~~~~~~l~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
..++... . ...+.+.+...+++.| .++|+||||||+|+. ..|+. ++ +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccC
Confidence 7543211 0 1234556677777766 789999999999973 33443 32 69999999999
Q ss_pred hhHHhhhCCCCeeeCC------CCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC--
Q 043083 299 ESVAHMMGSTNIIFIE------QLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR-- 370 (468)
Q Consensus 299 ~~v~~~~~~~~~~~l~------~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~-- 370 (468)
+.++..+.....+.++ +|+.+||++||.+.. ... . .++..+ .|+|+||||+++|+.|+.+.
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCC
Confidence 9988644433355666 999999999999984 221 1 122333 39999999999999999873
Q ss_pred cccccccccCCCchhhHhhccccCCChhhh-hHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH
Q 043083 371 SEMWKVQEIGQGLLTPLLLSYNDLPSNSMV-KRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEEYFNI 449 (468)
Q Consensus 371 ~~~w~~~~~~~~~~~~l~~sy~~L~~~~~~-k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~~~~ 449 (468)
...|... ....+..+|.+||+.||+ +. |+||+|||+||+++.|+++.++.+|+++| ++.++.+|++
T Consensus 344 ~eeW~~~-~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~e 410 (1221)
T 1vt4_I 344 WDNWKHV-NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNK 410 (1221)
T ss_dssp HHHHHHC-SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHH
T ss_pred HHHHhcC-ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHH
Confidence 5567653 345688999999999999 78 99999999999999999999999998887 1358899999
Q ss_pred HHHCCCcccc
Q 043083 450 LAARSFFQEF 459 (468)
Q Consensus 450 Lv~r~l~q~~ 459 (468)
|+++|||+..
T Consensus 411 LvdRSLLq~d 420 (1221)
T 1vt4_I 411 LHKYSLVEKQ 420 (1221)
T ss_dssp HHTSSSSSBC
T ss_pred HHhhCCEEEe
Confidence 9999999984
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.9e-38 Score=354.42 Aligned_cols=280 Identities=22% Similarity=0.311 Sum_probs=222.9
Q ss_pred CCcCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc-cccc-CceEEEEeCCCcC--H
Q 043083 149 LIDEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV-KRNF-ENVIWVCVSDTFE--E 224 (468)
Q Consensus 149 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~ 224 (468)
+..++.|+||++++++|.++|.... ...++|+|+||||+||||||++++++... ..+| +.++|++++...+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHH
Confidence 3445679999999999999997543 46899999999999999999999997544 4555 5688999998543 3
Q ss_pred HHHHHHHHHhhccCC----CChhhHHHHHHHHHHHhCCC--cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCC
Q 043083 225 IRVAKAIIEGLDESA----SSLSEFQSLMSHIHRSIEGK--KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~----~~~~~~~~l~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
...+..++..+.... ....+.+.+...++..+.++ |+||||||+|+.. .|.. ..+||+||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCC
Confidence 445666777765542 22456788889999999877 9999999998642 2322 2579999999999
Q ss_pred hhHHhh-hCCCCeeeCCC-CChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCcccccc
Q 043083 299 ESVAHM-MGSTNIIFIEQ-LAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMWKV 376 (468)
Q Consensus 299 ~~v~~~-~~~~~~~~l~~-L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~ 376 (468)
+.++.. .+....+.+.+ |+.+++++||...++.. .+...+.+.+|+++|+|+||||+.+|+.|+.++ ..|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHH
Confidence 999854 45567889996 99999999999988432 234456789999999999999999999999876 23321
Q ss_pred -----c------------ccCCCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCH
Q 043083 377 -----Q------------EIGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEM 439 (468)
Q Consensus 377 -----~------------~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 439 (468)
. ...+.+..+|.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 0 0112477899999999999 899999999999999999999999999554
Q ss_pred HHHHHHHHHHHHHCCCccccc
Q 043083 440 EMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 440 e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
++.++++|++|+++||++...
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHhccceEEec
Confidence 357899999999999999754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=302.13 Aligned_cols=276 Identities=21% Similarity=0.299 Sum_probs=210.8
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc-ccccC-ceEEEEeCCCcCHHHHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV-KRNFE-NVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~ 228 (468)
.++.||||+.++++|.++|.... ...++|+|+||||+||||||.+++++..+ ..+|+ .++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34579999999999999997532 35789999999999999999999997666 78895 7999999875 333333
Q ss_pred HH---HHHhhccC----CCChhhHHHHHHHHHHHhCC--CcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh
Q 043083 229 KA---IIEGLDES----ASSLSEFQSLMSHIHRSIEG--KKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 229 ~~---i~~~l~~~----~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
.. ++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+ ..+ .+|++||+|||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l-~~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VL-KAF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HH-HTT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HH-HHh---cCCCeEEEECCCc
Confidence 33 33444421 12334566777788888765 79999999998632 22 222 5689999999999
Q ss_pred hHHhhhCCCCeeeC---CCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCCcccccc
Q 043083 300 SVAHMMGSTNIIFI---EQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMWKV 376 (468)
Q Consensus 300 ~v~~~~~~~~~~~l---~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~ 376 (468)
.++..+. ...+++ .+|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.|+.++ ..|..
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 8876543 233444 5899999999999987531 222345678999999999999999999998875 24541
Q ss_pred -----c------------ccCCCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCH
Q 043083 377 -----Q------------EIGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEM 439 (468)
Q Consensus 377 -----~------------~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 439 (468)
. .....+..++..||+.||+ +.|.||++||+||+++.|+.+.+..+|.++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 0 0112567889999999999 899999999999999999999999999442
Q ss_pred HHHHHHHHHHHHHCCCccccc
Q 043083 440 EMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 440 e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
.+.++.++++|+++||++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHhCcCeEEec
Confidence 235788999999999998644
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=1.9e-17 Score=164.26 Aligned_cols=302 Identities=12% Similarity=0.020 Sum_probs=180.9
Q ss_pred CCceeeccchHHHHHHHh-hcCCCCCCCCeEEEEE--eecCCcchhHHHHHHhcChhcc---cccC-ceEEEEeCCCcCH
Q 043083 152 EGEVCGRVDEKNELLSKL-LCESSEQQQGLYVISL--VGLGGIGKTILAQLAYNNDEVK---RNFE-NVIWVCVSDTFEE 224 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 224 (468)
+..++||+.+++++..+| .....+.......+.| +|++|+|||+|++.+++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999888 4321100013456666 9999999999999999742211 0123 2678887777788
Q ss_pred HHHHHHHHHhhccCCCC-hhhHHHHHHHHHHHhC--CCcEEEEEeccCCCCc------cChhhhHhhhcCC---C--CCc
Q 043083 225 IRVAKAIIEGLDESASS-LSEFQSLMSHIHRSIE--GKKFFLVLDDVWDGDY------NKWEPFFLYLKNG---L--HGS 290 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~gs 290 (468)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||+|.... ..+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988654332 2234455556666653 6799999999977432 2233233333221 2 345
Q ss_pred EEEEecCChhHHhhh--------CC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcC------Cc
Q 043083 291 KILVTTRNESVAHMM--------GS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCK------GL 355 (468)
Q Consensus 291 ~ilvTtR~~~v~~~~--------~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~------G~ 355 (468)
.+|+||+...+...+ .. ...+.+.+|+.++++++|...+..... ......+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc
Confidence 688888765432111 11 223999999999999999865421110 11122466788999999 99
Q ss_pred hHHHHHHHHHhc---C-CCcccccccc----cCCCc-hhhHhhccccCCChhhhhHHHhhhcCCC--CCCccCHHHHHHH
Q 043083 356 PVAAKVIGNLLR---S-KRSEMWKVQE----IGQGL-LTPLLLSYNDLPSNSMVKRCFSYCTVFP--KDCNMDKEELINL 424 (468)
Q Consensus 356 Plai~~~~~~L~---~-~~~~~w~~~~----~~~~~-~~~l~~sy~~L~~~~~~k~cf~~ls~fp--~~~~i~~~~Li~~ 424 (468)
|..+..+..... . .....+.... ..... ...+..++..||. +.+.++..++.+. .+..++...+...
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~--~~~~~l~aia~l~~~~~~~~~~~~~~~~ 336 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSI--HELIILRLIAEATLGGMEWINAGLLRQR 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCH--HHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 976665543221 1 1111111000 00011 2345567788998 8899998888754 3345666666555
Q ss_pred HH--H-cCCCCCCCCCCHHHHHHHHHHHHHHCCCccccc
Q 043083 425 WM--A-QDYLNAEEDEEMEMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 425 W~--a-eg~i~~~~~~~~e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
+. + .-+ . ....+ ......++++|++.+|+....
T Consensus 337 ~~~~~~~~~-~-~~~~~-~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 337 YEDASLTMY-N-VKPRG-YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHS-C-CCCCC-HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhhc-C-CCCCC-HHHHHHHHHHHHhCCCEEeec
Confidence 52 2 111 0 01112 234567999999999998764
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.72 E-value=4.7e-17 Score=157.58 Aligned_cols=276 Identities=12% Similarity=0.093 Sum_probs=170.4
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc------CH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF------EE 224 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 224 (468)
.+..|+||+.++++|.+++.. + +++.|+|++|+|||||++++++. . . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 445799999999999998853 1 58999999999999999999873 2 1 6778765432 55
Q ss_pred HHHHHHHHHhhcc-----------------CCC-ChhhHHHHHHHHHHHhCC-CcEEEEEeccCCCCc-------cChhh
Q 043083 225 IRVAKAIIEGLDE-----------------SAS-SLSEFQSLMSHIHRSIEG-KKFFLVLDDVWDGDY-------NKWEP 278 (468)
Q Consensus 225 ~~~~~~i~~~l~~-----------------~~~-~~~~~~~l~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~~ 278 (468)
..++..+...+.. ..+ ...+..++...+...... ++++|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 123455666666665543 389999999977432 11222
Q ss_pred hHhhhcCCCCCcEEEEecCChhHHhhh-----------CC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHH
Q 043083 279 FFLYLKNGLHGSKILVTTRNESVAHMM-----------GS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGR 346 (468)
Q Consensus 279 l~~~l~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~ 346 (468)
+...+.. .++.++|+|++.......+ +. ...+.+.+|+.+++.+++.......+. . ...+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHH
Confidence 3222222 2477899998876532111 11 247899999999999999875422111 1 1245678
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCcccccc-cccCCCchhhHhhccccC---CChhhhhHHHhhhcCCCCCCccCHHHHH
Q 043083 347 KIAHKCKGLPVAAKVIGNLLRSKRSEMWKV-QEIGQGLLTPLLLSYNDL---PSNSMVKRCFSYCTVFPKDCNMDKEELI 422 (468)
Q Consensus 347 ~I~~~~~G~Plai~~~~~~L~~~~~~~w~~-~~~~~~~~~~l~~sy~~L---~~~~~~k~cf~~ls~fp~~~~i~~~~Li 422 (468)
.|+..|+|+|+++..++..+.... ..|.. ....+.+...+.-.+..+ ++ ..+..+..+|. + .++...+.
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~l~~la~---g-~~~~~~l~ 302 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNG-DFGRAMKRTLEVAKGLIMGELEELRRRSP--RYVDILRAIAL---G-YNRWSLIR 302 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHT---T-CCSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhccc-cHhHHHHHHHHHHHHHHHHHHHHHHhCCh--hHHHHHHHHHh---C-CCCHHHHH
Confidence 899999999999999887543211 11111 001111111222223333 55 78999999987 2 24555655
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHHHCCCcccc
Q 043083 423 NLWMAQDYLNAEEDEEMEMIGEEYFNILAARSFFQEF 459 (468)
Q Consensus 423 ~~W~aeg~i~~~~~~~~e~~~~~~~~~Lv~r~l~q~~ 459 (468)
....+. . ++.+. .....+++.|++.+|+...
T Consensus 303 ~~~~~~-~----~~~~~-~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 303 DYLAVK-G----TKIPE-PRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHT-T----CCCCH-HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-h----CCCCH-HHHHHHHHHHHhCCCEEec
Confidence 544221 1 01222 3457899999999999764
No 7
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.71 E-value=2e-17 Score=131.48 Aligned_cols=80 Identities=21% Similarity=0.460 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh--hhcCchHHHHHHHHHHHhhhchhhhhH
Q 043083 5 IVSSLLEQLISVAADEVKQQVRLLTGVREEVKKLTSNLQAIRAVLEDAEQR--QMQQDKAVTFWLDQLKDASYDMEDMLE 82 (468)
Q Consensus 5 ~vs~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~~Wl~~lr~~~yd~eD~ld 82 (468)
++++++++|.+. +.+|+.++.||++++++|+++|++|++||.+|+.+ +. .++.++.|+++||+++||+|||||
T Consensus 2 ~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~-~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 2 AISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQ-LDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777666 67899999999999999999999999999999987 44 789999999999999999999999
Q ss_pred HHHHHHH
Q 043083 83 EWTTARL 89 (468)
Q Consensus 83 ~~~~~~~ 89 (468)
+|.+...
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998754
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=4.3e-16 Score=151.15 Aligned_cols=273 Identities=12% Similarity=0.117 Sum_probs=163.4
Q ss_pred cCCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC-----cCHH
Q 043083 151 DEGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT-----FEEI 225 (468)
Q Consensus 151 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 225 (468)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++.+. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34579999999999999 731 58999999999999999999874 222 2578887642 3444
Q ss_pred HHHHHHHHhhcc-------------C-----CC-----------ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc---
Q 043083 226 RVAKAIIEGLDE-------------S-----AS-----------SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY--- 273 (468)
Q Consensus 226 ~~~~~i~~~l~~-------------~-----~~-----------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--- 273 (468)
.++..+...+.. . .+ .......+...+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 454444443311 0 00 11234555555554433 499999999977432
Q ss_pred cChhhhHhhhcCCCCCcEEEEecCChhHHhh----------h-CC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccch
Q 043083 274 NKWEPFFLYLKNGLHGSKILVTTRNESVAHM----------M-GS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKL 341 (468)
Q Consensus 274 ~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~ 341 (468)
..|..+...+.....+.++|+|++....... + +. ...+.+.+|+.+++.+++...+...+ ......
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD--IDFKDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT--CCCCCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC--CCCCcH
Confidence 2333333333222246789999998653221 1 11 25789999999999999987542111 111111
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCcccccc-cccCCCchhhH----h-hcc--ccCCChhhhhHHHhhhcCCCCC
Q 043083 342 EPMGRKIAHKCKGLPVAAKVIGNLLRSKRSEMWKV-QEIGQGLLTPL----L-LSY--NDLPSNSMVKRCFSYCTVFPKD 413 (468)
Q Consensus 342 ~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~-~~~~~~~~~~l----~-~sy--~~L~~~~~~k~cf~~ls~fp~~ 413 (468)
..|++.|+|+|+++..++..+.... ..|.. ....+.+...+ . +.+ ..||+ ..+..+..+|. +
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~--~~~~~l~~la~---g 302 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNK-NLDFAINQTLEYAKKLILKEFENFLHGREIARK--RYLNIMRTLSK---C 302 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHH--HHHHHHHHHTT---C
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHHHhhccccccH--HHHHHHHHHHc---C
Confidence 6899999999999999987764321 11211 01001111112 1 111 15777 78999999998 2
Q ss_pred CccCHHHHHHHHH-HcCCCCCCCCCCHHHHHHHHHHHHHHCCCcccc
Q 043083 414 CNMDKEELINLWM-AQDYLNAEEDEEMEMIGEEYFNILAARSFFQEF 459 (468)
Q Consensus 414 ~~i~~~~Li~~W~-aeg~i~~~~~~~~e~~~~~~~~~Lv~r~l~q~~ 459 (468)
. +...|....- ..|. ..+ ......+++.|++.+|+...
T Consensus 303 ~--~~~~l~~~~~~~~g~-----~~~-~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI-----EIS-DSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp B--CHHHHHHHHHHHHCS-----CCC-HHHHHHHHHHHHHTTSEEES
T ss_pred C--CHHHHHHHHHHhcCC-----CCC-HHHHHHHHHHHHhCCCEEec
Confidence 1 4445443221 1121 012 23457799999999999764
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=9.7e-14 Score=136.28 Aligned_cols=298 Identities=13% Similarity=0.038 Sum_probs=183.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc-CceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF-ENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 231 (468)
..++||+.+++++..++.....+..+..+.+.|+|++|+|||||++.+++. ..... ..++|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886531111123348999999999999999999873 32221 236788888878888999999
Q ss_pred HHhhccCCCC-hhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCccChhhhHhhhcCCC----CCcEEEEecCChhHHhh
Q 043083 232 IEGLDESASS-LSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL----HGSKILVTTRNESVAHM 304 (468)
Q Consensus 232 ~~~l~~~~~~-~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~~ 304 (468)
+..++...+. ..+...+...+...+ .+++.+||||+++..+......|...+.... .+..+|++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 8888654321 223445555555555 3668999999998765444555555553211 36678888877644322
Q ss_pred hC-------CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHc---------CCchHHHHHHHHHhcC
Q 043083 305 MG-------STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKC---------KGLPVAAKVIGNLLRS 368 (468)
Q Consensus 305 ~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~---------~G~Plai~~~~~~L~~ 368 (468)
+. ....+.+.+++.++..+++...+..... ...-..+....|++.+ +|.|..+..+......
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 1236999999999999999887532110 1122346678899999 7987665544332211
Q ss_pred ------CCccccc-ccc-cCCCchhhHhhccccCCChhhhhHHHhhhcCCC---CCCccCHHHHHHHHHH----cCCCCC
Q 043083 369 ------KRSEMWK-VQE-IGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFP---KDCNMDKEELINLWMA----QDYLNA 433 (468)
Q Consensus 369 ------~~~~~w~-~~~-~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp---~~~~i~~~~Li~~W~a----eg~i~~ 433 (468)
...-.++ ... ........+.-.+..||. +.+.++..++.+. .+-.+....+...+-. .|..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 328 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-- 328 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC--
Confidence 1100000 000 000001122334567887 7787777777654 2225666666665533 2311
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCcccccc
Q 043083 434 EEDEEMEMIGEEYFNILAARSFFQEFKK 461 (468)
Q Consensus 434 ~~~~~~e~~~~~~~~~Lv~r~l~q~~~~ 461 (468)
..+. ....+++++|...|++.....
T Consensus 329 --~~~~-~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 329 --PRVH-SQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp --CCCH-HHHHHHHHHHHHTTSSEEEEC
T ss_pred --CCCH-HHHHHHHHHHHhCCCeEEeee
Confidence 1122 345679999999999998654
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.50 E-value=3.5e-13 Score=132.09 Aligned_cols=297 Identities=14% Similarity=0.029 Sum_probs=173.5
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc---c-cCceEEEEeCCCcCHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR---N-FENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~~~~~~~~~~ 227 (468)
+..++||+.+++++..++..... ....+.+.|+|++|+|||+||+.+++...... . -...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854321 13456899999999999999999987421110 1 123678888888888999
Q ss_pred HHHHHHhhccCCCC-hhhHHHHHHHHHHHh--CCCcEEEEEeccCCCCcc--ChhhhHhhhc---CC--CCCcEEEEecC
Q 043083 228 AKAIIEGLDESASS-LSEFQSLMSHIHRSI--EGKKFFLVLDDVWDGDYN--KWEPFFLYLK---NG--LHGSKILVTTR 297 (468)
Q Consensus 228 ~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~---~~--~~gs~ilvTtR 297 (468)
+..++..++...+. ..+...+...+...+ .+++.+||||+++..... ..+.+...+. .. ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999988654332 223455566666666 356899999999764322 1223333332 11 34567888887
Q ss_pred ChhHHh-----hhCC--CCeeeCCCCChHHHHHHHHHhhcCC-CCCCCccchHHHHHHHHHHcC---CchHHHH-HHHHH
Q 043083 298 NESVAH-----MMGS--TNIIFIEQLAEEECCSLLERLAFFG-RSFEDREKLEPMGRKIAHKCK---GLPVAAK-VIGNL 365 (468)
Q Consensus 298 ~~~v~~-----~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~~~---G~Plai~-~~~~~ 365 (468)
...... .... ...+.+++++.++..+++...+... ...... .+....|++.++ |.|..+. .+..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 653211 1111 2478999999999999999875310 111111 234567888887 9994433 33222
Q ss_pred hc--C-CCccccccccc----CCCchhhHhhccccCCChhhhhHHHhhhc-CCCCCCccCHHHHHHHHH----HcCCCCC
Q 043083 366 LR--S-KRSEMWKVQEI----GQGLLTPLLLSYNDLPSNSMVKRCFSYCT-VFPKDCNMDKEELINLWM----AQDYLNA 433 (468)
Q Consensus 366 L~--~-~~~~~w~~~~~----~~~~~~~l~~sy~~L~~~~~~k~cf~~ls-~fp~~~~i~~~~Li~~W~----aeg~i~~ 433 (468)
.. . ........... .......+.-++..||. +.+..+..++ ++...-.+....+.+... ..| +.+
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~--~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPL--HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH 329 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCH--HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC
Confidence 21 0 01000000000 00011234556678887 5666555555 443222455554444322 223 111
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCccccc
Q 043083 434 EEDEEMEMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 434 ~~~~~~e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
. ....+..+++.|...|++....
T Consensus 330 ---~-~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 330 ---V-TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp ---C-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred ---C-CHHHHHHHHHHHHhCCCeEEEe
Confidence 1 2345678999999999999854
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=1.5e-12 Score=118.82 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=122.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++||+.+++.+..++.... ..+.+.|+|++|+||||||+.+++.......+.. ..+....+...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCSHHHHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcccHHHHHHhccCC
Confidence 468999999999999986432 2358899999999999999999874221111100 00000000000000000
Q ss_pred Hh-hccCCCChhhHHHHHHHHHHH----hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH-h-hh
Q 043083 233 EG-LDESASSLSEFQSLMSHIHRS----IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA-H-MM 305 (468)
Q Consensus 233 ~~-l~~~~~~~~~~~~l~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~~ 305 (468)
.. +............+...+... ..+++.+|||||++..+...++.+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 00 000001111112222222111 13567999999998766666777877777666678888888765321 1 12
Q ss_pred CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 306 GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 306 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.....+++++++.++..+++...+...+ ..-..+....|++.|+|+|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEH----IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2346799999999999999998764322 11224567889999999999998876544
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.3e-12 Score=128.11 Aligned_cols=295 Identities=12% Similarity=0.008 Sum_probs=172.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc----cc--cCceEEEEeCCCc-CHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK----RN--FENVIWVCVSDTF-EEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~~~~~-~~~ 225 (468)
..++||+++++++..++..... ....+.+.|+|++|+|||+||+.+++...-. .. ...++|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999888754221 1245689999999999999999999742111 11 2346788877766 888
Q ss_pred HHHHHHHHhhccCCC--ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhh-HhhhcCCCCCcEEEEecCChhHH
Q 043083 226 RVAKAIIEGLDESAS--SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPF-FLYLKNGLHGSKILVTTRNESVA 302 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTtR~~~v~ 302 (468)
.++..++..+..... ...+...+...+...+..++.+|||||++......+..+ ...+.....+..+|+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888888743221 122235566677777777666999999976433222222 33333222677899999875321
Q ss_pred h----hh--CCCCeeeCCCCChHHHHHHHHHhhcC-CCCCCCccchHHHHHHHHHHcC---CchHH-HHHHHHHh--cCC
Q 043083 303 H----MM--GSTNIIFIEQLAEEECCSLLERLAFF-GRSFEDREKLEPMGRKIAHKCK---GLPVA-AKVIGNLL--RSK 369 (468)
Q Consensus 303 ~----~~--~~~~~~~l~~L~~~e~~~Lf~~~a~~-~~~~~~~~~~~~~~~~I~~~~~---G~Pla-i~~~~~~L--~~~ 369 (468)
. .+ .....+.+++++.++..++|...+.. ..... -..+....|++.|+ |.|.. +..+-.+. ...
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1 11 11238999999999999999987531 11111 12345667888887 98874 44433332 111
Q ss_pred --C--cccccccccCCCchhhHhhccccCCChhhhhHHHhhhcCCCCCCccCHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 043083 370 --R--SEMWKVQEIGQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPKDCNMDKEELINLWMAQDYLNAEEDEEMEMIGEE 445 (468)
Q Consensus 370 --~--~~~w~~~~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~ 445 (468)
. .+.+.. .........+..++..|++ +.+..+..++....+-.+. +.....--..| +. ..+ .....+
T Consensus 255 ~~~i~~~~v~~-~~~~~~~~~~~~~~~~l~~--~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---~~~-~~~~~~ 325 (384)
T 2qby_B 255 GGIIRKEHVDK-AIVDYEQERLIEAVKALPF--HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---PLS-YRRFSD 325 (384)
T ss_dssp SSCCCHHHHHH-HHHHHHHHHHHHHHHSSCH--HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC---CCC-HHHHHH
T ss_pred CCccCHHHHHH-HHHHHhcchHHHHHHcCCH--HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC---CCC-HHHHHH
Confidence 0 000000 0000011345566778887 6777666666511100111 11111111222 11 122 234577
Q ss_pred HHHHHHHCCCcccccc
Q 043083 446 YFNILAARSFFQEFKK 461 (468)
Q Consensus 446 ~~~~Lv~r~l~q~~~~ 461 (468)
+++.|+.+|++.....
T Consensus 326 ~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 326 IISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHTTSEEEEEE
T ss_pred HHHHHHhCCCEEEEec
Confidence 9999999999988654
No 13
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6.5e-13 Score=130.10 Aligned_cols=296 Identities=13% Similarity=0.082 Sum_probs=170.2
Q ss_pred CCceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc---CceEEEEeCCCcCHHHHH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---ENVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~ 228 (468)
+..++||+.+++.+.+++..... ......+.|+|++|+|||||++.+++. ....+ ..++|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864311 134568999999999999999999873 33332 236788877766777888
Q ss_pred HHHHHhhccCCCC-hhhHHHHHHHHHHHhC--CCcEEEEEeccCCCC----ccChhhhHhhhcC-CCCCcEEEEecCChh
Q 043083 229 KAIIEGLDESASS-LSEFQSLMSHIHRSIE--GKKFFLVLDDVWDGD----YNKWEPFFLYLKN-GLHGSKILVTTRNES 300 (468)
Q Consensus 229 ~~i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~ 300 (468)
..++..++...+. ..+...+...+...+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888777543221 1234455555555553 458999999997632 2223333333322 233556788887664
Q ss_pred HHhhhCC-------CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcC---CchHHHHHHHH-Hhc--
Q 043083 301 VAHMMGS-------TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCK---GLPVAAKVIGN-LLR-- 367 (468)
Q Consensus 301 v~~~~~~-------~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~---G~Plai~~~~~-~L~-- 367 (468)
....+.. ...+.+++++.++..+++...+.... ....-..+....|++.++ |.|..+..+.. +..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3222211 24799999999999999998653111 111223455677888887 99985444332 211
Q ss_pred C-CCccccccccc----CCCchhhHhhccccCCChhhhhHHHhhhcCCCC-C-CccCHHHHHHHHH--H--cCCCCCCCC
Q 043083 368 S-KRSEMWKVQEI----GQGLLTPLLLSYNDLPSNSMVKRCFSYCTVFPK-D-CNMDKEELINLWM--A--QDYLNAEED 436 (468)
Q Consensus 368 ~-~~~~~w~~~~~----~~~~~~~l~~sy~~L~~~~~~k~cf~~ls~fp~-~-~~i~~~~Li~~W~--a--eg~i~~~~~ 436 (468)
. ........... .......+.-++..||. ..+..+..++.+.+ + ..+....+.+... + .|. .+
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~--- 326 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPF--HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA--- 326 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC---
T ss_pred HhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCH--HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC---
Confidence 0 01000110000 00011245556677887 66666665653221 1 1233433322221 1 121 11
Q ss_pred CCHHHHHHHHHHHHHHCCCccccc
Q 043083 437 EEMEMIGEEYFNILAARSFFQEFK 460 (468)
Q Consensus 437 ~~~e~~~~~~~~~Lv~r~l~q~~~ 460 (468)
.+ ......+++.|...|++....
T Consensus 327 ~~-~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 327 VT-QRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp CC-HHHHHHHHHHHHHHTSEEEEE
T ss_pred CC-HHHHHHHHHHHHhCCCEEEEe
Confidence 11 234567999999999998753
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=1.3e-11 Score=110.86 Aligned_cols=186 Identities=14% Similarity=-0.013 Sum_probs=118.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 231 (468)
..++|++..++.+..++.... .+.+.|+|++|+|||+||+.+++... ...+. ..+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 468999999999999986432 23389999999999999999987321 12222 23344444333322221111
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH--hhhCCCC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA--HMMGSTN 309 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~--~~~~~~~ 309 (468)
....... ....+++.+|||||++.......+.+...+.....++.+|+||+..... .......
T Consensus 90 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1110000 0013578999999998765555666777776656677888888765321 1122234
Q ss_pred eeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 310 IIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
.+.+.+++.++..+++...+...+. .-..+....|++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999987642111 12245667899999999996655443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.29 E-value=6.3e-12 Score=120.15 Aligned_cols=271 Identities=15% Similarity=0.106 Sum_probs=150.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++. ... ..++++.+.......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHH-----
Confidence 4699999998888877753210 0123356889999999999999999873 221 1344444332222111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC------------------CCcEEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL------------------HGSKILV 294 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilv 294 (468)
...+...+ .++.+|+||+++.........+...+.... ++..+|.
T Consensus 81 ----------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 ----------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 11111111 356789999997765444444555443211 2345666
Q ss_pred ecCChh-HHhhh-CC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHhcCCC-
Q 043083 295 TTRNES-VAHMM-GS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLLRSKR- 370 (468)
Q Consensus 295 TtR~~~-v~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~- 370 (468)
||.... +...+ .. ...+.+.+++.++...++...+...+. .-..+....|++.|+|.|..+..+...+....
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 11111 11 257899999999999999887643221 12346678899999999998887766543221
Q ss_pred ---cccccccccCCCchhhHhhccccCCChhhhhHHHhhhc-CCCCC----------CccCHHHHHH----HHHHcCCCC
Q 043083 371 ---SEMWKVQEIGQGLLTPLLLSYNDLPSNSMVKRCFSYCT-VFPKD----------CNMDKEELIN----LWMAQDYLN 432 (468)
Q Consensus 371 ---~~~w~~~~~~~~~~~~l~~sy~~L~~~~~~k~cf~~ls-~fp~~----------~~i~~~~Li~----~W~aeg~i~ 432 (468)
........ ...+...+..++..|+. ..+..+..+. .|..+ ..+++..|.+ +-+..|||.
T Consensus 220 ~~~~~~i~~~~-~~~~~~~~~~~~~~l~~--~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~ 296 (324)
T 1hqc_A 220 VAGEEVITRER-ALEALAALGLDELGLEK--RDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLK 296 (324)
T ss_dssp TTSCSCCCHHH-HHHHHHHHTCCTTCCCH--HHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEE
T ss_pred HhcCCCCCHHH-HHHHHHHhcccccCCCH--HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchh
Confidence 00000000 00111122233344544 4444444332 23222 1255555544 345689986
Q ss_pred C-CCCCCHHHHHHHHHH-HHHHCCCccc
Q 043083 433 A-EEDEEMEMIGEEYFN-ILAARSFFQE 458 (468)
Q Consensus 433 ~-~~~~~~e~~~~~~~~-~Lv~r~l~q~ 458 (468)
. ..+....+.|.+||+ ++++|+|+||
T Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 297 RTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp EETTEEEECHHHHHHTTCCCCC------
T ss_pred cCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5 345667789999998 9999999997
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.2e-10 Score=111.13 Aligned_cols=187 Identities=12% Similarity=0.109 Sum_probs=117.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 231 (468)
..++|++..++.+..++.... .+.+.|+|++|+|||++|+.+++... ...+. ..++++.+....... ...+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 468999999999999986432 22389999999999999999987321 11121 234444433222211 1112
Q ss_pred HHhhccCCCChhhHHHHHHHHHHHh-CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH-H-hhhCCC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRSI-EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV-A-HMMGST 308 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~-~~~~~~ 308 (468)
+..+.... ..+ .+++.++|+||++......++.|...+.....++.+|+||+...- . ......
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 21111000 011 356889999999876655666677777665567788888876432 1 112234
Q ss_pred CeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHH-HHHHHHH
Q 043083 309 NIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVA-AKVIGNL 365 (468)
Q Consensus 309 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pla-i~~~~~~ 365 (468)
..+.+.+++.++..+++...+...+. .-..+....|++.|+|.|.. +..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 58999999999999999887632111 11245677899999999954 4444433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=1e-09 Score=104.67 Aligned_cols=185 Identities=15% Similarity=0.063 Sum_probs=117.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 231 (468)
..++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....... ....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HHHH
Confidence 46899999999999888643 233489999999999999999987321 11111 133343332111110 0011
Q ss_pred HHhhccCCCChhhHHHHHHHHHHH--h-CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH-Hh-hhC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRS--I-EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV-AH-MMG 306 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~-~~~ 306 (468)
....... + .+++.++|+||++......++.|...+.....++++|+||..... .. ...
T Consensus 97 -----------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 97 -----------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp -----------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred -----------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 1111111 1 256889999999877656667777777665667888888876432 11 111
Q ss_pred CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 307 STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
....+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..+...+
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2347899999999999999887643221 1234567789999999999766554443
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3e-09 Score=99.86 Aligned_cols=172 Identities=7% Similarity=-0.025 Sum_probs=107.7
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc---cc-C-ceEEEEeCCCcCHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR---NF-E-NVIWVCVSDTFEEIRVA 228 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~~~~~~~~~~~~ 228 (468)
.+.||++|++++...|...- .......+.|+|++|+|||++++.+++...... .. . ..+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 37899999999988886543 124567889999999999999999998532111 11 1 25677777778889999
Q ss_pred HHHHHhhccCCCC-hhhHHHHHHHHHHH--hCCCcEEEEEeccCCCCccChhhhHhhhc---CCCCCcEEEEecCChhH-
Q 043083 229 KAIIEGLDESASS-LSEFQSLMSHIHRS--IEGKKFFLVLDDVWDGDYNKWEPFFLYLK---NGLHGSKILVTTRNESV- 301 (468)
Q Consensus 229 ~~i~~~l~~~~~~-~~~~~~l~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v- 301 (468)
..|++++.+.... ....+.+...+... -.+++++++||+++... .-+.|...+. .......||.++...+.
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654221 11223333333332 24668999999997653 2333444442 11112234444443211
Q ss_pred ----H----hhhCCCCeeeCCCCChHHHHHHHHHhhc
Q 043083 302 ----A----HMMGSTNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 302 ----~----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
. ..++ ...+.+.+++.++..+++.+++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1111 24689999999999999998764
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.95 E-value=1.2e-08 Score=99.24 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=116.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.......+.. ..+....+ ...+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~~----~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDN----CREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSHH----HHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccHH----HHHHh
Confidence 358999999999999886432 2347889999999999999988863211111100 00000000 00111
Q ss_pred Hh-------hccC-CCChhhHHHHHHHHHHH-hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-H-
Q 043083 233 EG-------LDES-ASSLSEFQSLMSHIHRS-IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-V- 301 (468)
Q Consensus 233 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v- 301 (468)
.. +... .....+...+...+... ..+++.++|+||++..+...++.+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01112222322222111 135678999999987766667777777776556777777776543 1
Q ss_pred HhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 302 AHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
.........+++.+++.++...++...+...+. .-..+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112223467899999999999999876532111 11245567899999999998876543
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.89 E-value=1.2e-08 Score=96.77 Aligned_cols=183 Identities=14% Similarity=0.034 Sum_probs=114.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccC-ceEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFE-NVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 231 (468)
.+++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 35899999999988887542 223389999999999999999887311 11111 1333444332110
Q ss_pred HHhhccCCCChhhHHHHHHHHHHH--h-CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HH-hhhC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRS--I-EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VA-HMMG 306 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~ 306 (468)
.........+... + .+++.++|+|+++.......+.|...+.....++.+|+||.... +. ....
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111111111 1 25688999999977655556667777766556778888876643 11 1122
Q ss_pred CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 307 STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
....+.+.+++.++...++...+...+. .-..+....|++.++|.|..+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3457999999999999999887643221 12245667899999999987655443
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=1.9e-08 Score=87.62 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc---c--ccCceEEEEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK---R--NFENVIWVCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~--~F~~~~wv~~~~~~~~~~~ 227 (468)
..++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++..... . .....++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998642 34567899999999999999988742110 0 011234443221 1
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHH-Hh-CCCcEEEEEeccCCCC--------ccChhhhHhhhcCCCCCcEEEEecC
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHR-SI-EGKKFFLVLDDVWDGD--------YNKWEPFFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l-~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR 297 (468)
. . ..............+.. .. .+++.+|+|||++... ......+...+.. .+..+|+||.
T Consensus 90 ~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------A-GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H-------T-TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h-------c-cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 0 00111111111112222 21 4668899999997642 1123334333333 2445677766
Q ss_pred ChhHHh-------hhCCCCeeeCCCCChHHHHHHH
Q 043083 298 NESVAH-------MMGSTNIIFIEQLAEEECCSLL 325 (468)
Q Consensus 298 ~~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf 325 (468)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554221 1122335788888888876553
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.77 E-value=6.8e-08 Score=92.56 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=108.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++. .... .+.++.+.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch--------
Confidence 4689999999999888864311 0123456899999999999999999763 2222 233333221111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC------------------CCcEEEE
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL------------------HGSKILV 294 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ilv 294 (468)
..+...+.. ..+..+|+||+++.........+...+.... ++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111111 2466799999997765444555555554321 1245666
Q ss_pred ecCChhH-Hh-hhCC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 295 TTRNESV-AH-MMGS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 295 TtR~~~v-~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
+|..... .. .... ...+.+.+++.++...++...+.... ..-..+....|++.+.|.|-.+..+..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6655322 11 1112 36799999999999999988764221 122345677889999999966655443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=1.2e-07 Score=91.42 Aligned_cols=195 Identities=11% Similarity=-0.002 Sum_probs=114.6
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 231 (468)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+.......+.. ++.++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 468999999999999886432 223899999999999999999874211111221 333444332222222 111
Q ss_pred HHhhccC-CCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HHhh-hCCC
Q 043083 232 IEGLDES-ASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VAHM-MGST 308 (468)
Q Consensus 232 ~~~l~~~-~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 308 (468)
+...... ....... .....-.++.-+|++|+++.........+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 1111111 0000000 00011124567999999977655555667777765555667777775432 1111 1113
Q ss_pred CeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 309 NIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 309 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
..+.+.+++.++....+...+...+. .-..+....|++.++|.|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999887643221 1224567889999999998755443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.71 E-value=2.7e-08 Score=90.23 Aligned_cols=175 Identities=14% Similarity=0.060 Sum_probs=101.1
Q ss_pred Cceeecc---chHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRV---DEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|+. ..++.+..++.. ...+.+.|+|++|+|||+||+.+++. .......+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 3567633 334444444432 13467899999999999999999873 3222334667766542110
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC--hhhhHhhhcCC-CCC-cEEEEecCChh-----
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK--WEPFFLYLKNG-LHG-SKILVTTRNES----- 300 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~----- 300 (468)
+. . .+ +.+ .++.+|||||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~------~-------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST------A-------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG------G-------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH------H-------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 001 356799999997654332 33344443211 112 24777776432
Q ss_pred ----HHhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 301 ----VAHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 301 ----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
+...+.....+.+.+++.++..+++...+...+ ..-..+....|++.++|.+..+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG----LQLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT----CCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111111126789999999999999998764221 112346677899999999887765543
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.70 E-value=2.9e-07 Score=91.20 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=104.9
Q ss_pred CceeeccchH---HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEK---NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|.+..+ ..+...+... ....+.|+|++|+||||||+.+++. ....| .-++... .....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~--- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE--- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH---
Confidence 4688988777 5666666432 3467999999999999999999873 32222 1222211 11111
Q ss_pred HHHHhhccCCCChhhHHHHHHHHH-HHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEE-ecCChhH---Hhh
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIH-RSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILV-TTRNESV---AHM 304 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v---~~~ 304 (468)
...+..... ....+++.+|+||+++.......+.|...+..+ ...+|. ||.+... ...
T Consensus 91 ---------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 91 ---------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp ---------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred ---------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111111111 112467889999999887666666677777653 233443 5555421 122
Q ss_pred hCCCCeeeCCCCChHHHHHHHHHhhcCCCCC---CCccchHHHHHHHHHHcCCchHHHHHHH
Q 043083 305 MGSTNIIFIEQLAEEECCSLLERLAFFGRSF---EDREKLEPMGRKIAHKCKGLPVAAKVIG 363 (468)
Q Consensus 305 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~---~~~~~~~~~~~~I~~~~~G~Plai~~~~ 363 (468)
......+.+.+++.++...++.+.+...... ....-..+....|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2334578899999999999999876431110 1122334567788888999887666443
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.61 E-value=3.5e-07 Score=90.67 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=98.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCc--eEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN--VIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+.|+|++|+||||||+.+++ .....++. +++++.. .+...+...+.... ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc---------HHHHHHHhc
Confidence 56789999999999999999998 33333322 4555433 33344444433211 112333344
Q ss_pred CCcEEEEEeccCCCCc--cChhhhHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHH
Q 043083 258 GKKFFLVLDDVWDGDY--NKWEPFFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLL 325 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf 325 (468)
.+..+|+|||++.... ...+.+...+.. ...|..||+||.... +...+.....+.+.+++.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4677999999976432 122334444431 234677888887632 2222333457899999999999999
Q ss_pred HHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 326 ERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 326 ~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
...+...+. .-+ .++...|++.+.|.+--+..+
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 887642111 111 234667889999998766544
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=5.1e-07 Score=84.18 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=103.7
Q ss_pred CCceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCH
Q 043083 152 EGEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEE 224 (468)
Q Consensus 152 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 224 (468)
-..++|.+..+++|.+.+...... +-.....+.|+|++|+|||+||+.+++. .... .+.++.+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH--
Confidence 356899999999988877432000 0023456899999999999999999873 2222 2233322211
Q ss_pred HHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-----------CccChhhhHhhh---c--CCCC
Q 043083 225 IRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-----------DYNKWEPFFLYL---K--NGLH 288 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~--~~~~ 288 (468)
... .......+...+......++.+|+||+++.. +......+...+ . ....
T Consensus 89 ------------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 0111122222233333456789999999542 111112222222 2 2234
Q ss_pred CcEEEEecCChhHHh--hh---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHH
Q 043083 289 GSKILVTTRNESVAH--MM---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVI 362 (468)
Q Consensus 289 gs~ilvTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~ 362 (468)
+..||.||....... .. .....+.+...+.++..++|...+..... ..... ...+++.+.| .|-.+..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 567888887653221 11 11346899999999999999987643221 11222 3567888877 56555544
Q ss_pred H
Q 043083 363 G 363 (468)
Q Consensus 363 ~ 363 (468)
.
T Consensus 231 ~ 231 (285)
T 3h4m_A 231 C 231 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.60 E-value=1.1e-06 Score=83.99 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCC
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSF 335 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 335 (468)
+++-++|+|+++..+....+.|...+.....++.+|++|.+.. +. ...+....+.+.+++.++..+.+.....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT----- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----
Confidence 5678999999988766666778888876666777777776643 22 2223346799999999999999987640
Q ss_pred CCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 336 EDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 336 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
. ..+.+..+++.++|.|..+..+
T Consensus 182 ~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1345577999999999866543
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.60 E-value=1.6e-06 Score=79.52 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=100.2
Q ss_pred CceeeccchHHHHHHHhh---cCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLL---CESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~---~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++.+.+.+. ....- +....+.+.|+|++|+|||+||+.+++. .... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 468888877776655442 21100 0123456889999999999999999873 2222 33444443211
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC------------ccCh---hhhHhhhcC--CCCC
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD------------YNKW---EPFFLYLKN--GLHG 289 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~------------~~~~---~~l~~~l~~--~~~g 289 (468)
.. .......+...+.......+.+|+||+++... .... ..+...+.. ...+
T Consensus 78 -----------~~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 -----------VI-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -----------SS-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -----------hc-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00 01111222223333334567899999997531 1111 223332322 2235
Q ss_pred cEEEEecCChhHHh--hhC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHH
Q 043083 290 SKILVTTRNESVAH--MMG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIG 363 (468)
Q Consensus 290 s~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 363 (468)
..||.||....... ... ....+.+...+.++..+++...+.... ...........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---LTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---CCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---CCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 56777776543211 111 135678999999999999988764322 111122234678888988754 555444
Q ss_pred H
Q 043083 364 N 364 (468)
Q Consensus 364 ~ 364 (468)
.
T Consensus 223 ~ 223 (262)
T 2qz4_A 223 N 223 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.57 E-value=1.2e-06 Score=84.85 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=109.1
Q ss_pred CceeeccchHHH---HHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe----CCCcCHH
Q 043083 153 GEVCGRVDEKNE---LLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV----SDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~----~~~~~~~ 225 (468)
..++|++..++. +...+.... ...+.+.|+|++|+|||+||+.+.+. .....+ .+.++. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 469999988766 444444322 12368999999999999999999873 222111 112221 1122333
Q ss_pred HHHHHHHHhhccC---------------------C-------CC-----hhhHHHHHHHHHHH-h-CCC----cEEEEEe
Q 043083 226 RVAKAIIEGLDES---------------------A-------SS-----LSEFQSLMSHIHRS-I-EGK----KFFLVLD 266 (468)
Q Consensus 226 ~~~~~i~~~l~~~---------------------~-------~~-----~~~~~~l~~~l~~~-l-~~k----~~LlVlD 266 (468)
..+...+...... . .. .............. . .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3443333321110 0 00 11122222222111 1 233 4599999
Q ss_pred ccCCCCccChhhhHhhhcCCCCCcEEEEecC-C-----------h-hH-HhhhCCCCeeeCCCCChHHHHHHHHHhhcCC
Q 043083 267 DVWDGDYNKWEPFFLYLKNGLHGSKILVTTR-N-----------E-SV-AHMMGSTNIIFIEQLAEEECCSLLERLAFFG 332 (468)
Q Consensus 267 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~-----------~-~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 332 (468)
+++..+....+.+...+....... ++++|. . . .+ .........+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 998776656666666665444333 443332 1 0 11 1112223457999999999999999876432
Q ss_pred CCCCCccchHHHHHHHHHHcC-CchHHHHHHHH
Q 043083 333 RSFEDREKLEPMGRKIAHKCK-GLPVAAKVIGN 364 (468)
Q Consensus 333 ~~~~~~~~~~~~~~~I~~~~~-G~Plai~~~~~ 364 (468)
. ..-..+....|++.+. |.|..+..+..
T Consensus 276 ~----~~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 276 D----VEMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp T----CCBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2 1223456778999997 88876655443
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=3e-07 Score=88.58 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=107.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcCh---hccc-ccCc----------------
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNND---EVKR-NFEN---------------- 212 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~-~F~~---------------- 212 (468)
..++|.+..++.+..++.... .... +.|+|++|+||||+++.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458898888888877772221 1233 8999999999999998877621 1000 0000
Q ss_pred ----eEEEEeCCCc-CHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC
Q 043083 213 ----VIWVCVSDTF-EEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL 287 (468)
Q Consensus 213 ----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 287 (468)
.+.+..+... ......++++..+.....- .... .+.. +.+++-++|||++...+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 0000112222221111000 0000 0000 23466799999998766555666777776544
Q ss_pred CCcEEEEecCChh-HH-hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccch-HHHHHHHHHHcCCchHHHHHHHH
Q 043083 288 HGSKILVTTRNES-VA-HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKL-EPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 288 ~gs~ilvTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~-~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
.++.+|++|.... +. ........+++.+++.++....+...+...+. .-. .+....|++.++|.+..+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677777776532 21 11223467899999999999999887632211 111 24567899999999987765543
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.49 E-value=1e-06 Score=83.74 Aligned_cols=184 Identities=14% Similarity=0.074 Sum_probs=106.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++. .. ..++.++.+.. ... .+..++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHH
Confidence 568999999999999987432 3467888999999999999999873 22 12445554432 111 111111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC-ccChhhhHhhhcCCCCCcEEEEecCChhH-Hh-hhCCCC
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD-YNKWEPFFLYLKNGLHGSKILVTTRNESV-AH-MMGSTN 309 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~-~~~~~~ 309 (468)
....... ...+++.+|+|||++... ....+.|...+.....++.+|+||....- .. ......
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1110000 012477899999997765 44455566666544446678888876431 10 001134
Q ss_pred eeeCCCCChHHHHHHHH-------HhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHHh
Q 043083 310 IIFIEQLAEEECCSLLE-------RLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGNLL 366 (468)
Q Consensus 310 ~~~l~~L~~~e~~~Lf~-------~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 366 (468)
.+.+.+++.++-.+++. ..+...+. .-. ..+....|++.++|.+..+......+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~--~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIA--DMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBS--CHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78999999888433322 22211110 111 12567789999998877554443333
No 33
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.47 E-value=5.2e-07 Score=78.01 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=37.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 2346789999999999999988873
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.3e-06 Score=88.43 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=108.6
Q ss_pred CceeeccchHHHHHHHhhcCCC-----------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCC
Q 043083 153 GEVCGRVDEKNELLSKLLCESS-----------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDT 221 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 221 (468)
.+++|++..++++..++..... ......+.+.|+|++|+|||++|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 4689999999999999864110 00113568999999999999999999873 2 12 1344555554
Q ss_pred cCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC---hhhhHhhhcCCCCCcEEEEecCC
Q 043083 222 FEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK---WEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
.... +....+........-..-...... .....+++.+|+||+++...... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 3332 222222211111000000000000 00123578899999997643322 24455555432 2335555443
Q ss_pred hh---HHhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch-HHHHHHH
Q 043083 299 ES---VAHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP-VAAKVIG 363 (468)
Q Consensus 299 ~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~ 363 (468)
.. +.........+.+.+++.++..+++...+...+.... .+....|++.++|.+ -++..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 2222222457899999999999998876643221111 234668899999955 4455443
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.44 E-value=3.5e-06 Score=80.06 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=89.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|++|+||||||+.+++. ....-..+++++.. .+...+...+... .... +...+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 456899999999999999999874 21111124555432 3333333333211 1111 12222 23
Q ss_pred cEEEEEeccCCCCc--cChhhhHhhhcC-CCCCcEEEEecCChh---------HHhhhCCCCeeeCCCCChHHHHHHHHH
Q 043083 260 KFFLVLDDVWDGDY--NKWEPFFLYLKN-GLHGSKILVTTRNES---------VAHMMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 260 ~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
..+|+|||++.... .....+...+.. ...+..||+||.... +...+.....+++++ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999976432 112334444321 123556788776432 222223335689999 99999999998
Q ss_pred hhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 328 LAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
.+..... .-..+....|++.+ |.+-.+.
T Consensus 178 ~~~~~~~----~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 178 KLKEFNL----ELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHC-SSHHHHH
T ss_pred HHHhcCC----CCCHHHHHHHHHhC-CCHHHHH
Confidence 7642221 12245667888888 7765443
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.42 E-value=2.4e-06 Score=80.59 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=90.4
Q ss_pred ceeeccchHHHHHHHhhcCC---------CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCH
Q 043083 154 EVCGRVDEKNELLSKLLCES---------SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEE 224 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 224 (468)
.++|.+..++.+.+.+.... -........+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888877776553210 001234557899999999999999988774222112111123333211
Q ss_pred HHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC---------CccChhhhHhhhcCCCCCcEEEEe
Q 043083 225 IRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG---------DYNKWEPFFLYLKNGLHGSKILVT 295 (468)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvT 295 (468)
.+...... .....+...+... +..+|+||+++.. .......|...+.....+..+|+|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11111000 1112222222222 3469999999743 223345566666655566778888
Q ss_pred cCChhHHhh--hC------CCCeeeCCCCChHHHHHHHHHhhc
Q 043083 296 TRNESVAHM--MG------STNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 296 tR~~~v~~~--~~------~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
|........ +. ....+.+++++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865422110 01 136789999999999999988764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.41 E-value=2.4e-06 Score=79.01 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=92.7
Q ss_pred CceeeccchHHHHHHH-------hhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSK-------LLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~-------L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
..++|.....++++.. +... .......+.|+|++|+|||+||+.+++. .. ++ .+.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH----
Confidence 3577887776666652 3211 1245678999999999999999999873 22 11 222332221
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC------CccC----hhhhHhhhcC---CCCCcEE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG------DYNK----WEPFFLYLKN---GLHGSKI 292 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~------~~~~----~~~l~~~l~~---~~~gs~i 292 (468)
+.. .........+...+......+..+|+||+++.. .... ...|...+.. ......|
T Consensus 101 ---------~~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 000111122233333444567899999998542 1111 1223332322 2223456
Q ss_pred EEecCChhHHhh---hCC-CCeeeCCCCCh-HHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC
Q 043083 293 LVTTRNESVAHM---MGS-TNIIFIEQLAE-EECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG 354 (468)
Q Consensus 293 lvTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G 354 (468)
|.||........ .+. ...+.+++++. ++...++.... . . ..+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-F----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-S----CHHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-C----CHHHHHHHHHHhcC
Confidence 777777654332 122 45688999988 66666665531 1 1 13456778888877
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=4.2e-06 Score=80.08 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=105.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCCcCHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 231 (468)
..++|.+..++.|...+... ....+.++|++|+||||+|+.+++... ...+.. +.-++.+.......+ +.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 35788887888887777532 223389999999999999999887311 111111 222322221121111 111
Q ss_pred HHhhccCCCChhhHHHHHHHHHHH---hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh-HH-hhhC
Q 043083 232 IEGLDESASSLSEFQSLMSHIHRS---IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES-VA-HMMG 306 (468)
Q Consensus 232 ~~~l~~~~~~~~~~~~l~~~l~~~---l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~-~~~~ 306 (468)
...+.+. +.+.+-++|+|+++.......+.|...+......+.+|++|.... +. ...+
T Consensus 97 -----------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 97 -----------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp -----------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -----------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111110 123467899999977655556667666665555667777765432 11 1112
Q ss_pred CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 043083 307 STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAK 360 (468)
Q Consensus 307 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 360 (468)
....+.+.+++.++..+.+...+.... ..-.......|++.++|.+--+.
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~----~~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEK----LKLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTT----CCBCHHHHHHHHHHHTTCHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 234788999999999988887653211 11123556789999999887543
No 39
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.35 E-value=5.3e-07 Score=74.89 Aligned_cols=115 Identities=14% Similarity=0.023 Sum_probs=69.9
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+++.... ...+ .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 478999999999887754331 2234789999999999999999874211 1122 23 655543221
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
.... ..+.. .+.-.|+||+++.........+...+.......++|.||...
T Consensus 66 ---------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0001 11111 133578999998766555566777775555566787777653
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.34 E-value=9.3e-06 Score=77.01 Aligned_cols=186 Identities=16% Similarity=0.095 Sum_probs=104.3
Q ss_pred CceeeccchHHHHHHHhhcCC------CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCES------SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++.|...+..+. .......+-+.|+|++|+|||+||+.+++. .... .+.++.+ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------H
Confidence 468999999988887773110 001123467899999999999999999873 2222 2233221 1
Q ss_pred HHHHHHHhhccCCCChhhHHHHH-HHHHHHhCCCcEEEEEeccCCCCcc-------C----hhhhHhhhc---CCCCCcE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLM-SHIHRSIEGKKFFLVLDDVWDGDYN-------K----WEPFFLYLK---NGLHGSK 291 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~-~~l~~~l~~k~~LlVlDdv~~~~~~-------~----~~~l~~~l~---~~~~gs~ 291 (468)
+. ... ....+... ..+...-..++.+|+||+++..... . ...+...+. ....+..
T Consensus 87 l~----~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 LV----SKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HH----TTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred Hh----hcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11 100 01112222 2222223456789999999653211 0 233333332 2334556
Q ss_pred EEEecCChhHHh-h--hCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHHH
Q 043083 292 ILVTTRNESVAH-M--MGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVIG 363 (468)
Q Consensus 292 ilvTtR~~~v~~-~--~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~ 363 (468)
||.||....... . -.....+.+...+.++-.++|+.++..... .........|++.+.| .+-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776543211 0 012356788999999999999987743211 1123456788899987 455565554
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.31 E-value=1.1e-05 Score=77.58 Aligned_cols=187 Identities=16% Similarity=0.055 Sum_probs=101.8
Q ss_pred CceeeccchHHHHHHHhhcCC------CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCES------SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++.|...+..+. .......+-|.|+|++|+|||+||+.+++. .... .+.++.+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------H
Confidence 468999999988887763210 001122345889999999999999999983 2222 2223222 1
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc-----------ChhhhHhhhc---CCCCCcEE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN-----------KWEPFFLYLK---NGLHGSKI 292 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~i 292 (468)
+. ..... .....+...+...-..++.+|+||+++..... ....+...+. ....+..|
T Consensus 120 l~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 11000 01111122222222457899999999753211 0223333332 12335566
Q ss_pred EEecCChhHH---hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHHH
Q 043083 293 LVTTRNESVA---HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVIG 363 (468)
Q Consensus 293 lvTtR~~~v~---~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~ 363 (468)
|.||...... -.-.....+.+...+.++-.+++..++..... .........|++.+.| .|-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6677654211 11123456789999999999999887642211 1123456789999988 455555543
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.31 E-value=2.4e-05 Score=74.11 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=101.8
Q ss_pred CceeeccchHHHHHHHhhcC---C---CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCE---S---SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~---~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++.|.+.+..+ . .......+-+.|+|++|+|||+||+.+++... ... .+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 46888888888777665311 0 00112346789999999999999999997320 111 23333332110
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc------C-----hhhhHhhhcC---CCCCcEE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN------K-----WEPFFLYLKN---GLHGSKI 292 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~------~-----~~~l~~~l~~---~~~gs~i 292 (468)
.... .....+...+...-..++.+|+||+++..... . ...+...+.. ...+..|
T Consensus 85 -----------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0000 11111222222222457889999999653110 1 1122223322 2334556
Q ss_pred EEecCChhHH-h--hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHHH
Q 043083 293 LVTTRNESVA-H--MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL-PVAAKVIGN 364 (468)
Q Consensus 293 lvTtR~~~v~-~--~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 364 (468)
|.||...... . .-.....+.+...+.++..++++.++..... .........|++.+.|+ +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666543211 1 0122456788999999999999887632211 11234567899999887 555655543
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1.6e-06 Score=74.86 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=57.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|++|+|||||++.+++.......+. ++++ +..++...+.......... .....+ .+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT-----KFLKTV-----LN 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS-----HHHHHH-----HT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH-----HHHHHh-----cC
Confidence 56899999999999999999987432122222 3344 3444444444433322211 111121 24
Q ss_pred cEEEEEeccCCCCccChh--hhHhhhcC-CCCCcEEEEecCCh
Q 043083 260 KFFLVLDDVWDGDYNKWE--PFFLYLKN-GLHGSKILVTTRNE 299 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 299 (468)
.-+|||||++......|. .+...+.. ...|..+|+||...
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 568999999743333343 23333332 12467788888754
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.27 E-value=1.9e-05 Score=76.04 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=104.5
Q ss_pred CceeeccchHHHHHHHhhcC----CC--CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCE----SS--EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
..++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999998888777421 00 00123567899999999999999999873 2211 34444432111
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc-----------cChhhhHhhhcC----CCCCcE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY-----------NKWEPFFLYLKN----GLHGSK 291 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~gs~ 291 (468)
.... .....+...+...-..++.+|+||+++.... .....+...+.. ...+..
T Consensus 156 -----------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 -----------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -----------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -----------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0000 0111111122222235678999999953211 012233333332 123445
Q ss_pred EEEecCChh-HHhh-h-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHHHH
Q 043083 292 ILVTTRNES-VAHM-M-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVIGN 364 (468)
Q Consensus 292 ilvTtR~~~-v~~~-~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~~ 364 (468)
||.||.... +... . .....+.+...+.++..+++...+.... ..-.......|++.+.| .+-.|..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~----~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ----CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC----BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC----CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665532 1111 1 1234678899999999999987763221 11123556789999998 5666766654
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=6.4e-06 Score=77.20 Aligned_cols=147 Identities=12% Similarity=-0.007 Sum_probs=92.4
Q ss_pred cchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChh-cccccCceEEEEeCC-CcCHHHHHHHHHHhhc
Q 043083 159 VDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDE-VKRNFENVIWVCVSD-TFEEIRVAKAIIEGLD 236 (468)
Q Consensus 159 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~ 236 (468)
++.++.|...+... ..+...++|++|+|||++|..+.+... ....+....+++.+. ...... .+++++.+.
T Consensus 3 ~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 3 KDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp -CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHh
Confidence 44455666666422 256889999999999999998876311 111122344554332 222222 222333322
Q ss_pred cCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh-hHHhhhCCCCeeeCCC
Q 043083 237 ESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE-SVAHMMGSTNIIFIEQ 315 (468)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l~~ 315 (468)
..+ ..+++-++|+|+++..+....+.|...+....+.+.+|++|.++ .+...+... .+++.+
T Consensus 76 ~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 76 YSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp SCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 111 12567799999998877777788888887766677777776554 333333334 899999
Q ss_pred CChHHHHHHHHHhh
Q 043083 316 LAEEECCSLLERLA 329 (468)
Q Consensus 316 L~~~e~~~Lf~~~a 329 (468)
++.++....+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998775
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.21 E-value=2.4e-06 Score=91.90 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc---ccc-C-ceEEEEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK---RNF-E-NVIWVCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~F-~-~~~wv~~~~~~~~~~~ 227 (468)
..++||+.++.+++..|.... ...+.|+|++|+|||+||+.+++...-. ... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999986532 2346899999999999999988732110 011 1 133443322110
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHHHhC-CCcEEEEEeccCCCC--------ccChhhhHhhhcCCCCCcEEEEecCC
Q 043083 228 AKAIIEGLDESASSLSEFQSLMSHIHRSIE-GKKFFLVLDDVWDGD--------YNKWEPFFLYLKNGLHGSKILVTTRN 298 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~ 298 (468)
...........+...+...-. +++.+|+||+++... ....+.+...+..+ +..+|.+|..
T Consensus 240 ---------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~~ 308 (854)
T 1qvr_A 240 ---------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEECH
T ss_pred ---------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecCc
Confidence 000000111122222222222 468999999997532 11122344444332 3345555554
Q ss_pred hhHH-----hh-hCCCCeeeCCCCChHHHHHHHHHh
Q 043083 299 ESVA-----HM-MGSTNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 299 ~~v~-----~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
.... .. ......+.+.+++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3321 11 112346889999999999999754
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.19 E-value=3.6e-05 Score=71.99 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=101.5
Q ss_pred CceeeccchHHHHHHHhhcCCC------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
..++|.+..++.+.+.+..+.. ......+.+.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999888877643110 00123457899999999999999999873 2222 23344433111
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC-----------hhhhHhhhcC---C--CCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK-----------WEPFFLYLKN---G--LHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~-----------~~~l~~~l~~---~--~~gs 290 (468)
.... .........+......++.+|+||++....... ...+...+.. . ..+.
T Consensus 93 -----------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 0000 111111122222234567899999996532110 1112222221 1 1245
Q ss_pred EEEEecCChh-----HHhhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 043083 291 KILVTTRNES-----VAHMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGN 364 (468)
Q Consensus 291 ~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 364 (468)
.||.||.... +... ....+.+...+.++...++...+..... .-.......|++.+.|.+- .+..+..
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666776542 2222 2356778888888888888876532211 1123456789999999876 5555443
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.18 E-value=1.5e-06 Score=76.47 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=61.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS 240 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 240 (468)
.++.+..++..... ......+.|+|++|+|||+||+.+++. .......++|++++ .+...+.......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc--
Confidence 33445555543321 112267899999999999999999974 32333345666543 3444443332211
Q ss_pred ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhh--hHh-hhcCC-CCCcEEEEecCCh
Q 043083 241 SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEP--FFL-YLKNG-LHGSKILVTTRNE 299 (468)
Q Consensus 241 ~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~~ 299 (468)
........+. +.-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 105 ---~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ---TMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---hHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1122222222 12399999997644334332 332 23211 2345688888753
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.16 E-value=6.8e-06 Score=82.07 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=79.1
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc-----Cc--eEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF-----EN--VIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~--~~wv~~~~~~~~~ 225 (468)
..++||+.+++.++..|.... ..-+.|+|++|+|||+||+.+++. +...+ .. ++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----
Confidence 358999999999999996532 234679999999999999998873 21111 11 22222220
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh--
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH-- 303 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-- 303 (468)
...+. .......+ +...-..++.+|++| ......+.|...+..+ ..++|.+|.......
T Consensus 247 --------~~~g~--~e~~~~~~---~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRGE--FEDRLKKV---MDEIRQAGNIILFID----AAIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHH---HHHHHTCCCCEEEEC----C--------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred --------cccch--HHHHHHHH---HHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 00000 00111222 222224567889999 1112223343333322 346666666544211
Q ss_pred -----hhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 304 -----MMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 304 -----~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.......+.+.+.+.++...++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123468999999999999998765
No 50
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.14 E-value=9.1e-05 Score=73.35 Aligned_cols=188 Identities=17% Similarity=0.156 Sum_probs=100.5
Q ss_pred CceeeccchHHHHHHHhhcC----C--CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCE----S--SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++.|...+..+ . .......+-+.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 46899998888888776311 0 001123467899999999999999999973 2 112233333221
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc-------cCh----hhhHhhhcC---CCCCcEE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY-------NKW----EPFFLYLKN---GLHGSKI 292 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~i 292 (468)
+.... .+.. ......+.. ..-..++.+|+||+++.... ... ..+...+.. ...+..|
T Consensus 204 l~~~~---~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSKW---LGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp -----------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhhh---cchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11000 1111 111222221 22235678999999975311 011 122222221 2345667
Q ss_pred EEecCChhHHh--hh-CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHHH
Q 043083 293 LVTTRNESVAH--MM-GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVIG 363 (468)
Q Consensus 293 lvTtR~~~v~~--~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~ 363 (468)
|.||....... .. .....+.+...+.++...+|..++.... ..........|++.+.| .+-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ----NSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----EECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 76776543211 11 2235678888888888899988763221 11123456789999988 454555544
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.12 E-value=1.2e-05 Score=80.33 Aligned_cols=185 Identities=10% Similarity=0.057 Sum_probs=103.6
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
..++|.+..+++|.+++...... +.....-|.|+|++|+|||+||+.+++. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 35899999999988877532000 0123456899999999999999999873 2222 23333221
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc-----------cChhhhHhhhcC--CCCCcEE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY-----------NKWEPFFLYLKN--GLHGSKI 292 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 292 (468)
+. ..+ .......+...+.....+++.+|+||+++.... .....|...+.. ...+..|
T Consensus 274 -l~----~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -IM----SKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -HH----TSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -hh----hhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 111 011222333344444456788999999943211 112234444432 2334566
Q ss_pred EEecCChhH-Hhhh----CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 043083 293 LVTTRNESV-AHMM----GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL-PVAAKVI 362 (468)
Q Consensus 293 lvTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 362 (468)
|.||..... ...+ .....+.+...+.++-.++|+.++.... ...... ...+++.+.|+ +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchhh----HHHHHHHccCCcHHHHHHH
Confidence 667765532 1111 2234688999999999999998763221 112222 24577778774 5555544
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=4.4e-05 Score=71.57 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=99.4
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.+++|.+..+++|.+++...... .-...+.+.|+|++|+|||+||+.+++. .... .+.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~---~i~v------~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN---FISI------KGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE---EEEE------CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC---EEEE------EhH
Confidence 45889888888887766431000 0123457899999999999999999973 2222 2222 222
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc--------------cChhhhHhhhcC--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY--------------NKWEPFFLYLKN--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 289 (468)
.+.... .+... .. +...+.......+.+|+||+++.... .....+...+.. ...+
T Consensus 84 ~l~~~~----~g~~~--~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW----FGESE--AN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH----HTTCT--TH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh----cCchH--HH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 232221 11111 11 22223333345689999999963110 012334444432 2335
Q ss_pred cEEEEecCChhHH-h-hhC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHH
Q 043083 290 SKILVTTRNESVA-H-MMG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVA 358 (468)
Q Consensus 290 s~ilvTtR~~~v~-~-~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 358 (468)
..||.||...... . ... ....+.+...+.++-.++++..+.... ......+ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchH----HHHHHHcCCCCHH
Confidence 6677777665322 1 122 235788999999999999987763322 1112222 3566677777654
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.11 E-value=1.7e-06 Score=71.64 Aligned_cols=110 Identities=10% Similarity=0.042 Sum_probs=63.0
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+++... ..+.++++. -....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHh------
Confidence 578999988888887754221 123478999999999999999887422 122222221 00111
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-CCCcEEEEecCC
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG-LHGSKILVTTRN 298 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 298 (468)
...+... .+.-.|+||++..........+...+... ..+.++|+||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 22357899999776554455566555533 345678887754
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.09 E-value=7e-05 Score=72.92 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=100.5
Q ss_pred CceeeccchHHHHHHHhhcCCC------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
..++|.+..++.|...+..... ......+.+.|+|++|+|||+||+.+++. .... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 4689999999998887732110 00112467899999999999999999873 2211 233433332110
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc-------cC----hhhhHhhhc---C-CCCCcE
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY-------NK----WEPFFLYLK---N-GLHGSK 291 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~-------~~----~~~l~~~l~---~-~~~gs~ 291 (468)
. .+ .....+...+...-...+.+|+||+++.... .. ...+...+. . ......
T Consensus 188 ~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00 0011111122222234568999999964310 00 112222222 1 122445
Q ss_pred EEEecCChhHH-h-hhCC-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 043083 292 ILVTTRNESVA-H-MMGS-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPV-AAKVIGN 364 (468)
Q Consensus 292 ilvTtR~~~v~-~-~~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 364 (468)
||.||...... . .... ...+.+...+.++..+++...+.... ..-.......|++.+.|..- .|..+..
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG----SPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666553221 1 1112 34688999999999999988764321 11223456789999988554 6655543
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=1.1e-05 Score=75.97 Aligned_cols=136 Identities=14% Similarity=0.218 Sum_probs=73.1
Q ss_pred ceeeccchHHHHHHHhhcCC---CCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCES---SEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 46788888888877775421 101123458999999999999999999873 22111124455554432211 1111
Q ss_pred HHHhhccCCC--ChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEecC
Q 043083 231 IIEGLDESAS--SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTTR 297 (468)
Q Consensus 231 i~~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 297 (468)
+ ++.... .......+...+. .....+|+||++..........|...+.... ..+.+|+||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 111100 0000011222221 2345799999998766555666666664321 2344777776
Q ss_pred C
Q 043083 298 N 298 (468)
Q Consensus 298 ~ 298 (468)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 56
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.07 E-value=7.9e-06 Score=75.14 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=81.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|....+.++.+.+..... ....|.|+|++|+|||+||+.+++...- .. ...+.++++.. ....+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~-~~-~~~~~v~~~~~-~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR-WQ-GPFISLNCAAL-NENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT-TT-SCEEEEEGGGS-CHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc-cC-CCeEEEecCCC-ChhHHHHHhc
Confidence 3578999998888877654321 2245789999999999999999874211 11 12345555543 2211111111
Q ss_pred HhhccCCCChhhH-HHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-----------CCCcEEEEecCChh
Q 043083 233 EGLDESASSLSEF-QSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG-----------LHGSKILVTTRNES 300 (468)
Q Consensus 233 ~~l~~~~~~~~~~-~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~~ 300 (468)
+......... ......+. ....-+|+||++..........|...+..+ ....+||+||....
T Consensus 79 ---g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~ 152 (265)
T 2bjv_A 79 ---GHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (265)
T ss_dssp ---CCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCH
T ss_pred ---CCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCH
Confidence 1100000000 00000111 123458999999876554445555555432 13457888877631
Q ss_pred ------------HHhhhCCCCeeeCCCCCh--HHHHHHHH
Q 043083 301 ------------VAHMMGSTNIIFIEQLAE--EECCSLLE 326 (468)
Q Consensus 301 ------------v~~~~~~~~~~~l~~L~~--~e~~~Lf~ 326 (468)
+...+. ...+.+++|.. ++...++.
T Consensus 153 ~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 153 PAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHH
Confidence 111222 23578888876 55555544
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.06 E-value=2.9e-05 Score=73.96 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=95.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|.+..++.+...+..... .+..+..+.|+|++|+||||||+.+++. ....|. ..+.+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 3578887766666555532100 0123467899999999999999999873 222111 1111111111
Q ss_pred HhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC------------------CCcEEE-
Q 043083 233 EGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL------------------HGSKIL- 293 (468)
Q Consensus 233 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il- 293 (468)
..+...+ ..+ .++.++++|+++.......+.+...+.... +...++
T Consensus 91 -------------~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111111 112 234577889886543322333333222110 011222
Q ss_pred EecCChhHHhhhCC--CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 043083 294 VTTRNESVAHMMGS--TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVIGN 364 (468)
Q Consensus 294 vTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 364 (468)
.|++...+...+.. .....+++.+.++..+++.+.+.... ..-..+.+..|++.+.|.|-.+..+..
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~----~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD----VEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 34444333221111 23578999999999999998763211 112346688999999999986655443
No 58
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.01 E-value=8.4e-05 Score=69.72 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=84.6
Q ss_pred CceeeccchHHHHHHHhhcCCC--C------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcC-
Q 043083 153 GEVCGRVDEKNELLSKLLCESS--E------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFE- 223 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~--~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~- 223 (468)
..++|.+..++.+...+..... . .......+.|+|++|+|||++|+.+.+. ... ..+.++++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 3589999988888877753100 0 0012456889999999999999999873 221 133444433211
Q ss_pred ------HHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccC------------hhhhHhhhcC
Q 043083 224 ------EIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNK------------WEPFFLYLKN 285 (468)
Q Consensus 224 ------~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~------------~~~l~~~l~~ 285 (468)
....+..+..... . .+.. .+++.+|+||+++...... ...|...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAG----G---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTT----T---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhh----H---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 1111222211110 0 0000 1246799999997754333 3445555543
Q ss_pred C----------CCCcEEEEecC----Ch-----hHHhhhCCCCeeeCCCCChHHHHHHHHH
Q 043083 286 G----------LHGSKILVTTR----NE-----SVAHMMGSTNIIFIEQLAEEECCSLLER 327 (468)
Q Consensus 286 ~----------~~gs~ilvTtR----~~-----~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 327 (468)
. ..+..+|.|+. .. .+...+ ...+.+++++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12455666642 21 111211 24689999999999988874
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00016 Score=69.62 Aligned_cols=179 Identities=15% Similarity=0.058 Sum_probs=97.8
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|-++.+++|.+.+.-+-.. +-..++-|.++|++|+|||.||+.+++. .... .+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc--
Confidence 35678888777776655321100 1123566899999999999999999983 3323 23444333111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc--------c------ChhhhHhhhcC--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY--------N------KWEPFFLYLKN--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------~------~~~~l~~~l~~--~~~g 289 (468)
.. .......+...+...-...+++|+||+++.-.. . ....+...+.. ...+
T Consensus 221 ------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 10 011112222222222346789999999964210 0 01223333332 2334
Q ss_pred cEEEEecCChhHH-----hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 290 SKILVTTRNESVA-----HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 290 s~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
..||.||..++.. +.-.....+.++..+.++-.++|+.+..... ....-+ ...|++.+.|+-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 5566677654331 1112356888998898888999987753221 112222 356788887753
No 60
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.99 E-value=7.7e-06 Score=76.82 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=85.2
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++... +... ..+.++++... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSDR-PLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCC--hHHHHH--
Confidence 3588999999998887765332 233578999999999999999987311 1111 13445555432 122221
Q ss_pred HhhccCCCCh-hhH-HHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-----------CCCcEEEEecCCh
Q 043083 233 EGLDESASSL-SEF-QSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG-----------LHGSKILVTTRNE 299 (468)
Q Consensus 233 ~~l~~~~~~~-~~~-~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~ 299 (468)
.+.+..... ... ......+.. ...-.|+||++..........|...+... ....+||.||...
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred -HhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 111111000 000 000001111 12347899999876554445566655432 1246788877754
Q ss_pred h------------HHhhhCCCCeeeCCCCC--hHHHHHHHHH
Q 043083 300 S------------VAHMMGSTNIIFIEQLA--EEECCSLLER 327 (468)
Q Consensus 300 ~------------v~~~~~~~~~~~l~~L~--~~e~~~Lf~~ 327 (468)
. +...+. ...+.+++|. .++...|+.+
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 111112 3357789998 5666666554
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=5.9e-05 Score=73.59 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=92.0
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|-++.+++|.+.+..+-.. +-..++-+.++|++|+|||+||+.+++. ...+ .+.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc--
Confidence 35778888888776655321100 1134567899999999999999999983 3222 23444333111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC--------C--ccC----hhhhHhhhc--CCCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG--------D--YNK----WEPFFLYLK--NGLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~--------~--~~~----~~~l~~~l~--~~~~g 289 (468)
.. .......+...+...-...+++|++|+++.. . ... ...|...+. ....+
T Consensus 245 ------------~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00 0111122222233333467899999998530 0 001 222333333 23345
Q ss_pred cEEEEecCChhHHh--hhC---CCCeeeCCCCChHH-HHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 290 SKILVTTRNESVAH--MMG---STNIIFIEQLAEEE-CCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 290 s~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~e-~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
..||.||....... ... ....+.+..++..+ -..+|+.+.... ......+ ...|++.+.|+
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCC----HHHHHHHTTTC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccC----HHHHHHHCCCC
Confidence 56777776543211 111 13467787676555 455665554321 1112222 34677888775
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00013 Score=71.36 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=97.1
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|-++.+++|.+.+.-+-.. +-..++-|.++|++|+|||+||+.+++. .... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc--
Confidence 35678887777776655321100 1234577999999999999999999983 3222 23344333111
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC------cc--------ChhhhHhhhc--CCCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD------YN--------KWEPFFLYLK--NGLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~------~~--------~~~~l~~~l~--~~~~g 289 (468)
... ......+.......-...+++|++|+++... .. ....+...+. ....+
T Consensus 254 ------------k~~-Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KYI-GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SSS-SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------ccc-hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 100 1111122222222234678999999996421 00 0122333333 22335
Q ss_pred cEEEEecCChhHHhh--hC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 290 SKILVTTRNESVAHM--MG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 290 s~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
..||.||..+..... +. ....+.++..+.++-.++|+.+...... ....+ ...|++.+.|+-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 567777766543221 11 1456788888888888888877643211 11222 346788887753
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=3.7e-05 Score=81.74 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=79.9
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc---ccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV---KRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++||+.++++++..|.... ..-+.|+|++|+|||++|+.+++...- .......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 468999999999999997533 234789999999999999988873110 00001111111111
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHhh-----
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAHM----- 304 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----- 304 (468)
.....+. .... +...+......++.+|++|.- ....+.+...+.. ...++|.||........
T Consensus 245 --g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 0000000 0111 122233333467889999911 1122223333332 24566766665442110
Q ss_pred --hCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 305 --MGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 305 --~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
......+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1113568999999999999998654
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.85 E-value=8.6e-05 Score=78.94 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=84.7
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhc---cc-ccCceEE-EEeCCCcCHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEV---KR-NFENVIW-VCVSDTFEEIRV 227 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~w-v~~~~~~~~~~~ 227 (468)
..++||+.+++++++.|.... ..-+.|+|++|+|||++|+.+++.... .. .....+| +..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 468999999999999986432 335689999999999999988873211 11 1122222 111110
Q ss_pred HHHHHHhhccCCCChhhHHH-HHHHHHHHhCCCcEEEEEeccCCCCc-----cChhhhHhhhcC--CCCCcEEEEecCCh
Q 043083 228 AKAIIEGLDESASSLSEFQS-LMSHIHRSIEGKKFFLVLDDVWDGDY-----NKWEPFFLYLKN--GLHGSKILVTTRNE 299 (468)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~ilvTtR~~ 299 (468)
+... ......+. +...+......++.+|+||+++.... ..-......+.. ...+..+|.+|...
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 0000 01112222 22223333344678999999975310 001111222211 12245666666554
Q ss_pred hHHhhh-------CCCCeeeCCCCChHHHHHHHHHhh
Q 043083 300 SVAHMM-------GSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 300 ~v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
...... .....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 322111 112368899999999988887654
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.85 E-value=8.2e-05 Score=74.04 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=63.1
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEe---------cC----ChhH-HhhhCCCCeeeCCCCChHHHHHHHH
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVT---------TR----NESV-AHMMGSTNIIFIEQLAEEECCSLLE 326 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT---------tR----~~~v-~~~~~~~~~~~l~~L~~~e~~~Lf~ 326 (468)
-++++|+++..+...++.|...+.......-|+.| |. ...+ ....+....+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999887777777787777655444323344 32 1111 1122233457999999999999998
Q ss_pred HhhcCCCCCCCccchHHHHHHHHHHc-CCchHHHHHHHH
Q 043083 327 RLAFFGRSFEDREKLEPMGRKIAHKC-KGLPVAAKVIGN 364 (468)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~I~~~~-~G~Plai~~~~~ 364 (468)
..+.... ..-..+....|++.+ .|.|..+..+..
T Consensus 377 ~~~~~~~----~~~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 377 IRAQTEG----INISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHT----CCBCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHhC----CCCCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 7763111 112245567788888 888886655443
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.85 E-value=1.1e-05 Score=67.19 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=50.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
...+.|+|+.|+|||||++.++..... ..+ .+++++....... . +..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----------------------------~-~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----------------------------D-AAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----------------------------G-GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----------------------------H-HHhC
Confidence 347899999999999999999874322 111 2566665442211 0 1134
Q ss_pred cEEEEEeccCCCCccChhhhHhhhcC-CCCCc-EEEEecCC
Q 043083 260 KFFLVLDDVWDGDYNKWEPFFLYLKN-GLHGS-KILVTTRN 298 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTtR~ 298 (468)
.-+|||||+.......-+.+...+.. ...|. .+|+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 56899999966433222334443331 11233 48888874
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.85 E-value=0.00017 Score=71.47 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=96.8
Q ss_pred CceeeccchHHHHHHHhhcCCCC------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.++.++++.+.+...... +...++-+.|+|++|+|||+||+.+++. .... .+.++.+.-.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 45888887766665543211000 0012334889999999999999999873 2222 233443331110
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc--------------ChhhhHhhhc--CCCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN--------------KWEPFFLYLK--NGLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~--~~~~gs 290 (468)
. .......+...+.......+.+|+||+++..... ....+...+. ....+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0011122333444444567899999999652110 1223333332 122356
Q ss_pred EEEEecCChhHHh--hhC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 291 KILVTTRNESVAH--MMG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 291 ~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
.||.||....... ... ....+.+...+.++-.++++.++.... ...... ...|++.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777664322 112 134778888888888888887663221 111112 345788888877
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=0.00023 Score=64.85 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=94.5
Q ss_pred CceeeccchHHHHHHH---hhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSK---LLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~---L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..++++... +.....- +....+-+.|+|++|+||||||+.+++. .... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 4688888776665543 3221100 0012345889999999999999999873 2222 23333222110
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc--------------ChhhhHhhhcC--CCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN--------------KWEPFFLYLKN--GLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 290 (468)
.. . ......+...+.......+.++++|+++..... ....+...+.. ...+.
T Consensus 84 -------~~----~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF----V-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC----C-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh----h-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 0 011122233333334556789999998432110 11122222221 23345
Q ss_pred EEEEecCChhHH-hh-hC---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCC-chHHHHHH
Q 043083 291 KILVTTRNESVA-HM-MG---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKG-LPVAAKVI 362 (468)
Q Consensus 291 ~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~ 362 (468)
.||.||...... .. .. ....+.+...+.++-.+++..+..... ...... ...++..+.| .+--+..+
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 667777654321 11 11 134677888888888888877653211 111111 2457778888 67665544
No 69
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=9.6e-05 Score=72.15 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=95.0
Q ss_pred CceeeccchHHHHHHHhhcCCC-------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS-------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|-++.+++|.+.+..+-. .+-..++-|.++|++|+|||.||+.+++. ...+ .+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhh---
Confidence 4577888888887765432110 01234677999999999999999999983 3222 2334333211
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-------Ccc---C----hhhhHhhhcC--CCCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-------DYN---K----WEPFFLYLKN--GLHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-------~~~---~----~~~l~~~l~~--~~~g 289 (468)
....+ .....+...+...-...+++|++|+++.- ... . ...+...+.. ...+
T Consensus 253 -----------~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 253 -----------QMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -----------SSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -----------hcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 11101 11111111222222346899999998531 000 0 1223333332 2234
Q ss_pred cEEEEecCChhHHhh-h-C---CCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 290 SKILVTTRNESVAHM-M-G---STNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 290 s~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
..||.||..+..... + . ....+.++..+.++-.++|+.+..... ....-+ ...|++.+.|+
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 456667766543221 1 1 245688888888888888886653221 111122 34678888774
No 70
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00055 Score=66.82 Aligned_cols=178 Identities=14% Similarity=0.031 Sum_probs=95.7
Q ss_pred ceeeccchHHHHHHHhhcCCC-------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS-------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|+|||.||+.+++. .... .+.++.+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~---- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELV---- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGC----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhh----
Confidence 567777777777665421100 01134677899999999999999999983 3322 2334433211
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc------c--------ChhhhHhhhcC--CCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY------N--------KWEPFFLYLKN--GLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~------~--------~~~~l~~~l~~--~~~gs 290 (468)
.... ......+...+...-...+++|++|+++.... . ....++..+.. ...+.
T Consensus 281 ----------sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 281 ----------QKYV-GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ----------CCSS-SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ----------cccC-CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 0100 11112222222233346789999999964210 0 01122223322 23344
Q ss_pred EEEEecCChhHH-----hhhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 291 KILVTTRNESVA-----HMMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 291 ~ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
.||.||...... +.-.....+.+...+.++-.++|+.++.... ....-+ ...|++.|.|+-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 566677554321 1112356788888888888899987763221 112222 346788888753
No 71
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00047 Score=66.63 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=93.4
Q ss_pred ceeeccchHHHHHHHhhcCCC-------CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS-------EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
++-|-++.+++|.+.+.-+-. .+-..++=|.++|++|+|||.||+.+++. .... .+.++.+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~---- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELI---- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGC----
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhh----
Confidence 466777777777665532110 01234567999999999999999999983 3322 2333332211
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc--------c------ChhhhHhhhc--CCCCCc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY--------N------KWEPFFLYLK--NGLHGS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~--------~------~~~~l~~~l~--~~~~gs 290 (468)
.... ......+...+...-...+++|+||+++.... . ....+...+. ....+.
T Consensus 254 ----------sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 254 ----------QKYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp ----------CSSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred ----------hccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 1110 11111122222222245789999999864110 0 0112333332 223355
Q ss_pred EEEEecCChhHHhh--hC--C-CCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCc
Q 043083 291 KILVTTRNESVAHM--MG--S-TNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGL 355 (468)
Q Consensus 291 ~ilvTtR~~~v~~~--~~--~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~ 355 (468)
.||.||...+.... +. . ...+.+..-+.++-.++|+.+..... .....+ ...|++.+.|+
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 66777766543221 11 1 34577888888888888887763221 122222 34677888775
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.73 E-value=3.8e-05 Score=81.64 Aligned_cols=156 Identities=15% Similarity=0.258 Sum_probs=89.4
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4588999988888777754321 11223447999999999999999999873 21111234555554421100
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCC-----------CCCcEEEEecCC
Q 043083 230 AIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNG-----------LHGSKILVTTRN 298 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 298 (468)
.. ....+...++ .....+|+||++..........|...+..+ .....||+||..
T Consensus 565 ----------~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------ST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------cc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 0011111121 133458999999877666666666666432 134578888873
Q ss_pred h-----hH----Hh-----hhCC-CCeeeCCCCChHHHHHHHHHhh
Q 043083 299 E-----SV----AH-----MMGS-TNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 299 ~-----~v----~~-----~~~~-~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
. .+ .. .... ...+.+.+++.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 11 11 1111 3578899999998888877654
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.67 E-value=2.9e-05 Score=71.39 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=81.4
Q ss_pred CceeeccchHHHHHHHhhcCCCC------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
..++|.+..++.+.+.+..-... .....+-+.|+|++|+|||+||+.+++. ....| +.++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH---
Confidence 46899988888777655310000 0011233789999999999999999873 22222 1111111000
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc---------------ChhhhHhhhcCC---CC
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN---------------KWEPFFLYLKNG---LH 288 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~---------------~~~~l~~~l~~~---~~ 288 (468)
....... ..... .+......++.+|+||+++..... ....+...+... ..
T Consensus 83 -------~~~~~~~--~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGLGA--SRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSSCS--SSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcchHH--HHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0000000 00011 111222245689999999653211 123333333221 12
Q ss_pred CcEEEEecCChhHH--hhhC---CCCeeeCCCCChHHHHHHHHHhhc
Q 043083 289 GSKILVTTRNESVA--HMMG---STNIIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 289 gs~ilvTtR~~~v~--~~~~---~~~~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
...||.||...... .... ....+.+...+.++-.++++..+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 24566677655321 1111 235678889999999999987653
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.67 E-value=0.00021 Score=75.13 Aligned_cols=179 Identities=10% Similarity=0.056 Sum_probs=98.5
Q ss_pred CceeeccchHHHHHHHhhc----CCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLC----ESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.++.|-++.+++|.+.+.- +.- -+-..++-|.++|++|+|||+||+.+++. ...+ .+.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 3567888888777665531 110 01234677999999999999999999984 3222 23443221
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCc------cCh-----hhhHhhhcC--CCCCcEE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDY------NKW-----EPFFLYLKN--GLHGSKI 292 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~------~~~-----~~l~~~l~~--~~~gs~i 292 (468)
+ . .. ........+...+.......+++|+||+++.-.. ... ..|...+.. ...+..|
T Consensus 274 -l----~----sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -I----M----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H----H----SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -h----h----cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 1 11 1112223344444444567799999999964210 111 122222221 1223445
Q ss_pred EEecCChhHH-hhh----CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 293 LVTTRNESVA-HMM----GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 293 lvTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
|.||...+.. ..+ .....+++...+.++-.++|+.+..... .....+ ...|++++.|+-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 6666554321 111 1245788888888888888887653211 112222 346888888764
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.58 E-value=0.0007 Score=62.98 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999999983
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.52 E-value=0.00019 Score=68.11 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=85.5
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|++..++.+...+... .-+.++|++|+|||+||+.+.+. .... ...+.++......++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~--- 91 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGT--- 91 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEE---
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCc---
Confidence 5789998888888877642 25889999999999999999872 2222 233444333333332211
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCC--CcEEEEEeccCCCCccChhhhHhhhcCC-----------CCCcEEEEecCChh
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEG--KKFFLVLDDVWDGDYNKWEPFFLYLKNG-----------LHGSKILVTTRNES 300 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~~ 300 (468)
....... ... ....+ ...++++|++...+......+...+... .....|+.|+....
T Consensus 92 -~~~~~~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 92 -MIYNQHK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp -EEEETTT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred -eeecCCC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 0000000 000 00001 1258999999776554455555544321 23455665665322
Q ss_pred ------H-HhhhCCCC-eeeCCCCChHHHHHHHHHhhc
Q 043083 301 ------V-AHMMGSTN-IIFIEQLAEEECCSLLERLAF 330 (468)
Q Consensus 301 ------v-~~~~~~~~-~~~l~~L~~~e~~~Lf~~~a~ 330 (468)
+ ........ .+.+...+.++-.+++.....
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 11112223 588999999999999988764
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.52 E-value=0.00021 Score=72.62 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=77.5
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
.++|-++-...+...+.-..-........+.|+|++|+||||||+.++.. ....| .-++++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHHH
Confidence 46777666665544332111001124568999999999999999999873 22222 22333332221111111111
Q ss_pred hhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc----ChhhhHhhhcCCC---------------CCcEEEE
Q 043083 234 GLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN----KWEPFFLYLKNGL---------------HGSKILV 294 (468)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ilv 294 (468)
.++.. .+.+...+... ....-+++||+++..... ....+...+.... ....||.
T Consensus 157 ~ig~~------~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGAM------PGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred HhccC------chHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 11100 01111122222 223448889999764332 1233444442111 2446777
Q ss_pred ecCChh-----HHhhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 295 TTRNES-----VAHMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 295 TtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
||.... +...+ ..+.+.+++.++-..++..+.
T Consensus 230 ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 766532 22222 468999999999988888764
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.00018 Score=76.40 Aligned_cols=164 Identities=14% Similarity=0.211 Sum_probs=90.1
Q ss_pred CceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAK 229 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 229 (468)
..++|.+..++.+...+..... ..+.....+.++|++|+|||++|+.+.+. .. ...+.++++...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 3578888888877776643211 01223457999999999999999999873 22 1234444443221100
Q ss_pred HHHHhhccCCCChhh---HHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEe
Q 043083 230 AIIEGLDESASSLSE---FQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVT 295 (468)
Q Consensus 230 ~i~~~l~~~~~~~~~---~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 295 (468)
...+-+..+.... ...+...+. +....+|+||++.......++.|...+..+. ..+.||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 0011111111111 111222222 2446799999998766655666666664321 23557777
Q ss_pred cCChh----------------------HHhh-----hCC-CCeeeCCCCChHHHHHHHHHhh
Q 043083 296 TRNES----------------------VAHM-----MGS-TNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 296 tR~~~----------------------v~~~-----~~~-~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
|.... +... ... ...+.+.+++.++...++...+
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 76411 0001 111 2467888899888888777654
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.49 E-value=0.00025 Score=76.28 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=72.3
Q ss_pred ceeeccchHHHHHHHhhcCCC---CCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHH
Q 043083 154 EVCGRVDEKNELLSKLLCESS---EQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKA 230 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 230 (468)
.++|.+..++.+...+..... ..+.....+.|+|++|+|||++|+.+.+. ....-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H---
Confidence 478999888888777754321 11223468999999999999999998873 21111123445444322110 0
Q ss_pred HHHhhccCCCC---hhhHHHHHHHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCC-----------CCcEEEEec
Q 043083 231 IIEGLDESASS---LSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGL-----------HGSKILVTT 296 (468)
Q Consensus 231 i~~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 296 (468)
...+.+..+. ......+...+.. ....+|+||++..........|...+..+. .++.||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0011100000 0001122222222 334699999998776666666777665431 244578887
Q ss_pred CC
Q 043083 297 RN 298 (468)
Q Consensus 297 R~ 298 (468)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 75
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.36 E-value=0.0001 Score=69.15 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=27.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 161 EKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 161 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+..+.+++..... .....+.|+|++|+|||+||+.+++.
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445555543221 12457889999999999999999884
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.36 E-value=0.00098 Score=58.86 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=53.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhc-----------cCC-CChhhHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLD-----------ESA-SSLSEFQ 246 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~ 246 (468)
...++.|+|++|+|||||+..+.. ..-..++|++....++...+.. +....+ ... ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999998876 1123578888776555554433 332221 111 1122233
Q ss_pred HHHHHHHHHhCCCcEEEEEeccCC
Q 043083 247 SLMSHIHRSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 247 ~l~~~l~~~l~~k~~LlVlDdv~~ 270 (468)
+....+...+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 445555555544577999998854
No 82
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.31 E-value=0.00011 Score=68.27 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=44.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe--CCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV--SDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
.+++.|+|++|+|||+||.++... .-..++|++. ....+. .. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~~---~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------YN---TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------CB---CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------hh---cCHHHHHHHHHHHHh
Confidence 456789999999999999998863 1123567777 332110 00 234455555555565
Q ss_pred CCcEEEEEeccCC
Q 043083 258 GKKFFLVLDDVWD 270 (468)
Q Consensus 258 ~k~~LlVlDdv~~ 270 (468)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 455 999999954
No 83
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.29 E-value=0.00088 Score=60.19 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=52.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhccc----ccCceEEEEeCCCcCHHHHHHHHHHhhccCC------------CChh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKR----NFENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SSLS 243 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 243 (468)
-.++.|+|++|+|||||+..+........ .-..++|++....+....+. .++..++... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45899999999999999988876311111 12458888877755554432 2333332211 1112
Q ss_pred hHHHHHHHHHHHhC-CCcEEEEEeccCC
Q 043083 244 EFQSLMSHIHRSIE-GKKFFLVLDDVWD 270 (468)
Q Consensus 244 ~~~~l~~~l~~~l~-~k~~LlVlDdv~~ 270 (468)
+...+...+...+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22233344545553 4677999999854
No 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.005 Score=56.49 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=67.6
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCCcE
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGKKF 261 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~ 261 (468)
+.|+|++|+|||||++.++.. ... ..+++..+.-.+. ...........+.+. -...++
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999873 211 2344443321110 000011111111111 134578
Q ss_pred EEEEeccCCCCc-------cC----hhhhHhhhcCC--CCCcEEEEecCChhHHhh--h---CCCCeeeCCCCChHHHHH
Q 043083 262 FLVLDDVWDGDY-------NK----WEPFFLYLKNG--LHGSKILVTTRNESVAHM--M---GSTNIIFIEQLAEEECCS 323 (468)
Q Consensus 262 LlVlDdv~~~~~-------~~----~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~ 323 (468)
++++|++..... .. ...+...+..+ ....-++.+|..+.+... . .....+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 01 12223333322 223445566666544321 1 225677888889999999
Q ss_pred HHHHhh
Q 043083 324 LLERLA 329 (468)
Q Consensus 324 Lf~~~a 329 (468)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.27 E-value=0.0011 Score=70.52 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=85.8
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
.+++|.+..+++|.+++...... .-.....|.|+|++|+||||||+.+... ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 46899999999988877531000 0123457999999999999999999873 22222 3333211
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCCcc-----------ChhhhHhhhcCC--CCCcEE
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGDYN-----------KWEPFFLYLKNG--LHGSKI 292 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~~--~~gs~i 292 (468)
+ ..... ......+...+.......+.++++|++...... ....+...+... ..+..+
T Consensus 274 -l--------~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 -I--------MSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H--------SSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred -h--------hhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1 00110 111122223333333456789999999542110 012233333321 224456
Q ss_pred EEecCChhHH-hhhC----CCCeeeCCCCChHHHHHHHHHhh
Q 043083 293 LVTTRNESVA-HMMG----STNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 293 lvTtR~~~v~-~~~~----~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
|.||...... ..+. ....+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6666654221 1111 13457788888999989988765
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.26 E-value=0.0022 Score=63.95 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=35.0
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|++..++.+...+... .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789998888888777543 36889999999999999999873
No 87
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.17 E-value=0.0028 Score=60.30 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.5
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458898876555444443221 22389999999999999999987
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.17 E-value=0.0089 Score=59.58 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=90.8
Q ss_pred CceeeccchHHHHHHH---hhcCCCC---CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSK---LLCESSE---QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~---L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..+.++.+. +.....- +-.-.+-+.|+|++|+|||+||+.++.. .. ...+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH---
Confidence 4688988766655544 3221100 0011223899999999999999999873 22 1234444332110
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhC----CCcEEEEEeccCCCCc----------cCh----hhhHhhhcCC--
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIE----GKKFFLVLDDVWDGDY----------NKW----EPFFLYLKNG-- 286 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~----~k~~LlVlDdv~~~~~----------~~~----~~l~~~l~~~-- 286 (468)
... ......+...++ ..+.++++|+++.... ..+ ..+...+..+
T Consensus 103 -----------~~~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------MFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------SCT-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------hhh-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 000 001122333332 2358999999954211 111 2333333322
Q ss_pred CCCcEEEEecCChhHHhh--h---CCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 287 LHGSKILVTTRNESVAHM--M---GSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 287 ~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
..+..++.||..+..... . .....+.+...+.++-.++++.++... ....... ...|++.+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 234456666666654221 1 124578899999998889888765321 1111111 235777787765
No 89
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.0023 Score=58.05 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=76.1
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEE
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFF 262 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~L 262 (468)
+.|+|++|+|||||++.++.. .. ...+.++.. .+ .... .. .....+...+...-...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------DF----VEMF----VG-VGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------HH----HHSC----TT-HHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------HH----HHHH----hh-HHHHHHHHHHHHHHhcCCeE
Confidence 899999999999999999873 22 123333221 11 1100 00 01111222222222345689
Q ss_pred EEEeccCCCC----------ccC----hhhhHhhhcCCC--CCcEEEEecCChhHHhh--h---CCCCeeeCCCCChHHH
Q 043083 263 LVLDDVWDGD----------YNK----WEPFFLYLKNGL--HGSKILVTTRNESVAHM--M---GSTNIIFIEQLAEEEC 321 (468)
Q Consensus 263 lVlDdv~~~~----------~~~----~~~l~~~l~~~~--~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~e~ 321 (468)
+++|+++... ... ...+...+..+. ....++.||..+..... . .....+.+...+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999994310 011 122333333222 22345556655544211 1 1245688888898888
Q ss_pred HHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 322 CSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 322 ~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
.++++..+... ....... ...|++.+.|+-
T Consensus 192 ~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 88888765321 1111112 335777887754
No 90
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.08 E-value=0.00046 Score=61.12 Aligned_cols=114 Identities=12% Similarity=-0.005 Sum_probs=62.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC--hhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS--LSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l 256 (468)
.-.++.|+|..|+||||++..+... ...+-..++.+...... . ....+++.++..... .....++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3468999999999999999777663 22222223444322211 1 112334444332211 122344555555555
Q ss_pred CCCcE-EEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 257 EGKKF-FLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 257 ~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
.+.++ +||+|.+...+....+.+ ..+.+ .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 44444 999999976443333333 33333 2778999998654
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.05 E-value=0.011 Score=56.03 Aligned_cols=158 Identities=9% Similarity=-0.074 Sum_probs=99.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH-HhC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHR-SIE 257 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~ 257 (468)
-.++..++|+.|.||++.+..+..... ...|+....+.+....+.. ++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCc
Confidence 356889999999999999988876321 1234321112222222332 22222221 134
Q ss_pred CCcEEEEEeccCC-CCccChhhhHhhhcCCCCCcEEEEecCC-------hhHHhhhC-CCCeeeCCCCChHHHHHHHHHh
Q 043083 258 GKKFFLVLDDVWD-GDYNKWEPFFLYLKNGLHGSKILVTTRN-------ESVAHMMG-STNIIFIEQLAEEECCSLLERL 328 (468)
Q Consensus 258 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~ 328 (468)
+++-++|+|+++. .+...++.|...+....+++.+|+++.. ..+...+. ....++..+++.++....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677899999977 5556677888888766667777766543 23333332 3467889999999999888877
Q ss_pred hcCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 043083 329 AFFGRSFEDREKLEPMGRKIAHKCKGLPVAAKVI 362 (468)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 362 (468)
+...+ ..-..+.+..+++.++|.+..+...
T Consensus 155 ~~~~g----~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLN----LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTT----CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcC----CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 63222 1122456778999999988877653
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.03 E-value=0.0015 Score=58.20 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=60.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-------------------
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS------------------- 240 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 240 (468)
-.++.|+|++|+|||||++.++.... ..-..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999998885321 1112366666544 3333333322 2221100
Q ss_pred ----ChhhHHHHHHHHHHHhC-CCc--EEEEEeccCCC---CccChhhhHhhhcC--CCCCcEEEEecCCh
Q 043083 241 ----SLSEFQSLMSHIHRSIE-GKK--FFLVLDDVWDG---DYNKWEPFFLYLKN--GLHGSKILVTTRNE 299 (468)
Q Consensus 241 ----~~~~~~~l~~~l~~~l~-~k~--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 299 (468)
...+..++...+...+. .+. .+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555544442 233 49999998632 22223334343332 12477888888765
No 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.03 E-value=0.0031 Score=53.82 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 94
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.02 E-value=0.0034 Score=60.57 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+.|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 95
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.02 E-value=0.0016 Score=56.07 Aligned_cols=116 Identities=19% Similarity=0.114 Sum_probs=63.7
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC---CcCHHHHHHHHHHhhcc---------CCCC----hhh
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD---TFEEIRVAKAIIEGLDE---------SASS----LSE 244 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~l~~---------~~~~----~~~ 244 (468)
..|.|++-.|.||||+|--..-. .....+ .+.++.... ......++..+. +.. .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR-A~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR-AVGHGK-NVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH-HHHTTC-CEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 45677777779999999554431 122222 244443322 223333333320 000 0000 111
Q ss_pred HHHHHHHHHHHhCCCcE-EEEEeccCC---CCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 245 FQSLMSHIHRSIEGKKF-FLVLDDVWD---GDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 245 ~~~l~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
........++.+.+.+| |||||++-. ......+.+...+........||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 23334455566655555 999999832 233456677777877667778999999863
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.98 E-value=0.0019 Score=61.37 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=54.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-.++.|+|++|+|||||+.+++.... ..=..++|++....++.. .++.++.... ...+.+++...+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999988886322 211247888887766654 3334433211 1234555555565
Q ss_pred HHhC-CCcEEEEEeccCC
Q 043083 254 RSIE-GKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l~-~k~~LlVlDdv~~ 270 (468)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4566899998843
No 97
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.0043 Score=57.06 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=87.9
Q ss_pred CceeeccchHHHHHHHhhcCCCC------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR 226 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 226 (468)
.+++|.+..+.++.+........ +-.-.+-+.|+|++|+|||||++.++.. .. ...+.++.. .
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~------~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH------H
Confidence 46788876665554433211000 0001112899999999999999999873 22 123333321 1
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC----------ccCh----hhhHhhhcCCCC--Cc
Q 043083 227 VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD----------YNKW----EPFFLYLKNGLH--GS 290 (468)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~~--gs 290 (468)
+. ... .. .....+...+...-...+.++++|++.... ...+ ..+...+..+.. ..
T Consensus 109 ~~----~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 109 FV----EMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp HH----HST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred HH----HHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 100 00 011112222222223456899999994310 0111 122222332221 23
Q ss_pred EEEEecCChhHHh-----hhCCCCeeeCCCCChHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHcCCch
Q 043083 291 KILVTTRNESVAH-----MMGSTNIIFIEQLAEEECCSLLERLAFFGRSFEDREKLEPMGRKIAHKCKGLP 356 (468)
Q Consensus 291 ~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~~~G~P 356 (468)
.++.||..+.... .......+.+...+.++-.++++.++... ....... ...++..+.|+.
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 4444555543321 11234578899999998888888765321 1111111 345778888865
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.82 E-value=0.0033 Score=60.17 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=54.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIHR 254 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 254 (468)
..++.|.|.+|+||||||.++..... ..-..++|++....++... +..++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 45888999999999999988776322 2223589999888766542 333433211 12345666666666
Q ss_pred HhC-CCcEEEEEeccCC
Q 043083 255 SIE-GKKFFLVLDDVWD 270 (468)
Q Consensus 255 ~l~-~k~~LlVlDdv~~ 270 (468)
..+ .+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 664 3456999999854
No 99
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.82 E-value=0.004 Score=58.65 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=55.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc---------cc-----CceEEEEeCCCcCHHHHHHHHHHhhccCC-----
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR---------NF-----ENVIWVCVSDTFEEIRVAKAIIEGLDESA----- 239 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 239 (468)
.-.++.|+|.+|+|||+||.+++....... .. ..++|++....++..++... +..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 456899999999999999988775321111 11 35889998887777666533 34443221
Q ss_pred -------CChhhHHHHHHHHHHHhC--CCcEEEEEeccC
Q 043083 240 -------SSLSEFQSLMSHIHRSIE--GKKFFLVLDDVW 269 (468)
Q Consensus 240 -------~~~~~~~~l~~~l~~~l~--~k~~LlVlDdv~ 269 (468)
.......++...+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 111222234455555554 456699999884
No 100
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.81 E-value=0.004 Score=57.70 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=53.2
Q ss_pred EEEEeecCCcchhHHHHHHhcChhccccc--CceEEEEeCCCcCHHHHHHHHHHhhccCCCC-----hhhHHHH-HHHHH
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNF--ENVIWVCVSDTFEEIRVAKAIIEGLDESASS-----LSEFQSL-MSHIH 253 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l-~~~l~ 253 (468)
++-|.|++|+|||||+.+++.. ....+ ..++|++....++... +++++...+. ..+.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999877653 22222 3488999888777642 5556544221 2344554 33333
Q ss_pred HH--h-CCCcEEEEEeccCC
Q 043083 254 RS--I-EGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~--l-~~k~~LlVlDdv~~ 270 (468)
.. + .++.-|||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45678999999854
No 101
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.005 Score=58.51 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc----ccCceEEEEeCCCcCHHHHHHHHHHhhccCC------------CCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR----NFENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SSL 242 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 242 (468)
...++.|+|++|+|||+||.+++....... .-..++|++....++..++.. ++..++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999988776322211 123588999888777666543 333333211 112
Q ss_pred hhHHHHHHHHHHHhC---CCcEEEEEeccC
Q 043083 243 SEFQSLMSHIHRSIE---GKKFFLVLDDVW 269 (468)
Q Consensus 243 ~~~~~l~~~l~~~l~---~k~~LlVlDdv~ 269 (468)
....++...+...+. .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 223334444445443 456699999884
No 102
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.79 E-value=0.0048 Score=58.15 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=55.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccc----cCceEEEEeCCCcCHHHHHHHHHHhhccCC------------CChh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRN----FENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SSLS 243 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 243 (468)
..++.|+|++|+|||+||.+++........ -..++|++....++..++.. ++..++... ....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 458999999999999999887753211111 23588999888777666543 334443221 1112
Q ss_pred hHHHHHHHHHHHhC--CCcEEEEEeccC
Q 043083 244 EFQSLMSHIHRSIE--GKKFFLVLDDVW 269 (468)
Q Consensus 244 ~~~~l~~~l~~~l~--~k~~LlVlDdv~ 269 (468)
...++...+...++ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22234455555553 456799999884
No 103
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.72 E-value=0.0041 Score=59.19 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=54.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-.++.|+|++|+||||||.++..... ..=..++|++....++.. .++.++.... ...+.+++...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999988875322 222348899988776653 2334432211 1224555555555
Q ss_pred HHhC-CCcEEEEEeccCC
Q 043083 254 RSIE-GKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l~-~k~~LlVlDdv~~ 270 (468)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5553 4566999999854
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0016 Score=56.73 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=32.7
Q ss_pred ccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 158 RVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 158 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
|++.++.+.+.+.... .....+|+|+|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777887776542 13567999999999999999998876
No 105
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.50 E-value=0.0057 Score=58.29 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=52.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
..+++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 345899999999999999988776322 2223588999887776442 333432211 1123445555554
Q ss_pred HHh-CCCcEEEEEeccCC
Q 043083 254 RSI-EGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l-~~k~~LlVlDdv~~ 270 (468)
... ..+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 443 24556999999843
No 106
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.42 E-value=0.0074 Score=56.03 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=26.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVS 219 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 219 (468)
-.+++|+|++|+|||||+..++........ ..++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 458999999999999999888763222111 135566543
No 107
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.38 E-value=0.027 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999863
No 108
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.37 E-value=0.015 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999864
No 109
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.34 E-value=0.008 Score=55.74 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=43.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 257 (468)
...+++|+|++|+||||++..+.......... .+..+.... .....+.+.......+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 35699999999999999998877532211111 244444332 1223333333333332221111222334444443 3
Q ss_pred CCcEEEEEec
Q 043083 258 GKKFFLVLDD 267 (468)
Q Consensus 258 ~k~~LlVlDd 267 (468)
.+.=++++|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3445788893
No 110
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.30 E-value=0.015 Score=56.19 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=51.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccc----ccCceEEEEeCCCcCHHHHHHHHHHhhccCC------------CCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKR----NFENVIWVCVSDTFEEIRVAKAIIEGLDESA------------SSL 242 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 242 (468)
.-.++.|+|++|+|||||+..++-...... .-..++|++....+....+. .+++.++... ...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 345899999999999999987652111111 22348888877766655443 2444443211 111
Q ss_pred hhHHHHHHHHHHHh-CCCcEEEEEeccCC
Q 043083 243 SEFQSLMSHIHRSI-EGKKFFLVLDDVWD 270 (468)
Q Consensus 243 ~~~~~l~~~l~~~l-~~k~~LlVlDdv~~ 270 (468)
.........+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12222333333333 34677999998744
No 111
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.29 E-value=0.018 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.25 E-value=0.026 Score=49.84 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=30.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhc---cc-ccCceEEEEeCCCcCH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEV---KR-NFENVIWVCVSDTFEE 224 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~~~~~~ 224 (468)
.-.+++|+|++|+|||||++.++..... .. .-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4569999999999999999988752111 11 1234778876554443
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.21 E-value=0.019 Score=54.60 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=52.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhccccc---Cc-eEEEEeCCCcCHHHHHHHHHHhhccC------------CCCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNF---EN-VIWVCVSDTFEEIRVAKAIIEGLDES------------ASSL 242 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~ 242 (468)
.-.++.|+|++|+|||||+..++......... .. ++|++....+....+ ..+.+..+.. ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46799999999999999998887632111111 23 588887665543333 2333333211 0111
Q ss_pred hhHHHHHHHHHHHhC------CCcEEEEEeccCC
Q 043083 243 SEFQSLMSHIHRSIE------GKKFFLVLDDVWD 270 (468)
Q Consensus 243 ~~~~~l~~~l~~~l~------~k~~LlVlDdv~~ 270 (468)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 223344445555553 4677999998843
No 114
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.16 E-value=0.0052 Score=58.45 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccc-ccCc-eEEEEeCCCc
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKR-NFEN-VIWVCVSDTF 222 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~~ 222 (468)
+.++.+..-. .-..++|+|.+|+|||||++.+.+. +.. +-+. ++++-+++..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCCh
Confidence 5566665433 3457999999999999999988763 222 2222 4456677644
No 115
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.16 E-value=0.011 Score=55.44 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=31.5
Q ss_pred eeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 156 CGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 156 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|....+..+...+.... ....+.+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555555554432 234678999999999999999988765
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.14 E-value=0.0041 Score=54.46 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555432 13567999999999999999998876
No 117
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.12 E-value=0.018 Score=53.86 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=33.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.-.++.|.|.+|+||||||..++.+...+. ..++|++... +..++...++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 345899999999999999988775432222 4578887664 4444444444
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.04 E-value=0.0035 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 119
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.01 E-value=0.0028 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 120
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.01 E-value=0.0028 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=20.0
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998876
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.00 E-value=0.0031 Score=53.24 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=18.5
Q ss_pred EEEEEeecCCcchhHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLA 200 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v 200 (468)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.99 E-value=0.0063 Score=56.25 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 234567899999999999999998876
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.98 E-value=0.0034 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999998886
No 124
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.93 E-value=0.025 Score=59.46 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=75.6
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHH
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEI 225 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 225 (468)
..+.|-++.+++|.+.+.-+... +....+-+.++|++|+|||.||+.+++. .... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc----c
Confidence 35667776676666555432110 1123456789999999999999999984 2222 222221 1
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCcEEEEEeccCCCC----------ccC----hhhhHhhhcCC--CCC
Q 043083 226 RVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDGD----------YNK----WEPFFLYLKNG--LHG 289 (468)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~~g 289 (468)
+ ++....+ .....+...+...-+..+++|+||+++.-- ... ...|+..+... ..+
T Consensus 546 ~----l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 546 E----LLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp H----HHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred h----hhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 1111111 112223333333335678999999985411 001 22333334322 223
Q ss_pred cEEEEecCChhH-----HhhhCCCCeeeCCCCChHHHHHHHHHhh
Q 043083 290 SKILVTTRNESV-----AHMMGSTNIIFIEQLAEEECCSLLERLA 329 (468)
Q Consensus 290 s~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 329 (468)
.-||.||..+.. .+.-.....+.+..-+.++-.++|+.+.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 334445544322 1111225677777666666677776654
No 125
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.92 E-value=0.022 Score=54.10 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC--CCCCcEEEEecCChhHHhhhC
Q 043083 246 QSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN--GLHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 246 ~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 306 (468)
+.-.-.|.+.|-.++-+|++|.--.. +...-..+...+.. ...|..||++|.+...+..++
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 33344567777888889999987432 11122233333432 123677889998877765443
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.86 E-value=0.0036 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
No 127
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.86 E-value=0.0049 Score=53.57 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|+|+|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.86 E-value=0.005 Score=56.91 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887763
No 129
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.82 E-value=0.023 Score=53.52 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=32.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
-.++.|.|.+|+||||||..++.+... .=..++|++... +..++...++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHH
Confidence 458999999999999999888764322 112467776644 4445555443
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.80 E-value=0.0055 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 131
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.79 E-value=0.022 Score=55.78 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=49.5
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhc--------cCCCChhhHHH----H
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLD--------ESASSLSEFQS----L 248 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~----l 248 (468)
.++|+|.+|+|||||++.+...... ..-..++++-+++.. +..+++.++...-. ....+...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 5889999999999999988874222 122445667777654 34455554543210 01111111111 1
Q ss_pred HHHHHHHh---CCCcEEEEEeccCC
Q 043083 249 MSHIHRSI---EGKKFFLVLDDVWD 270 (468)
Q Consensus 249 ~~~l~~~l---~~k~~LlVlDdv~~ 270 (468)
.-.+.+++ ++++.||++||+..
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11233333 58899999999943
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.78 E-value=0.00066 Score=58.37 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=25.4
Q ss_pred CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCCh
Q 043083 257 EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
.++.-+|++|.+...+. .|......+.+. |..|++|.+..
T Consensus 74 ~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp CTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred cCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 34556999999977543 355444433332 67799888754
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.78 E-value=0.0046 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 134
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.77 E-value=0.0079 Score=54.43 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+.++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 16 ARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444544332 334568999999999999999998876
No 135
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.74 E-value=0.042 Score=51.02 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....++.|+|++|+||||++..++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 35679999999999999999888763
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.004 Score=59.36 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=59.0
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHH-HHHHHHHhhccCCCChhhHHHHHHHHHHHhCCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIR-VAKAIIEGLDESASSLSEFQSLMSHIHRSIEGK 259 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 259 (468)
.+++|+|+.|+|||||.+.+... ........+ +.+.++..... -...++.+.... ... ......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~~-~~~---~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREVH-RDT---LGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEBT-TTB---SCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeeec-ccc---CCHHHHHHHHhhhC
Confidence 48999999999999999988762 211111222 12222111000 000000000000 011 12344788888888
Q ss_pred cEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHHh
Q 043083 260 KFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVAH 303 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 303 (468)
+=+|++|...+ .+.+..+.... ..|..||+||...+...
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 89999999953 33344433332 23666899988776543
No 137
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.72 E-value=0.004 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 138
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.72 E-value=0.0041 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998886
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.71 E-value=0.0064 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.68 E-value=0.0046 Score=52.91 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.68 E-value=0.0061 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 142
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.65 E-value=0.0051 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999996553
No 143
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.64 E-value=0.0058 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.59 E-value=0.0057 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.57 E-value=0.0061 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 146
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.55 E-value=0.0063 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999998863
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0046 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 148
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0075 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999886
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.48 E-value=0.0052 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 150
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.47 E-value=0.01 Score=58.78 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888763
No 151
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.47 E-value=0.0087 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|+|++|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998886
No 152
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.46 E-value=0.0082 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|.|++|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
No 153
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.46 E-value=0.13 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999977765
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.44 E-value=0.0078 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999874
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.44 E-value=0.0072 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 156
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.42 E-value=0.083 Score=51.45 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987775
No 157
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.41 E-value=0.0069 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.41 E-value=0.0074 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998763
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.40 E-value=0.0077 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.38 E-value=0.0059 Score=53.27 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 161
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.37 E-value=0.0075 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|.|++|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 162
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.36 E-value=0.0059 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999998886
No 163
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.35 E-value=0.0086 Score=57.39 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=34.5
Q ss_pred ceeeccchHHHHHHHhhcC-------C--CCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 154 EVCGRVDEKNELLSKLLCE-------S--SEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|.+..++.+...+... . .........+.|+|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3688888888877766200 0 00111345789999999999999999987
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.35 E-value=0.009 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 165
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.32 E-value=0.0092 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 166
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.31 E-value=0.0082 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999998876
No 167
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.30 E-value=0.0073 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|.|++|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.30 E-value=0.0094 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998886
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.29 E-value=0.011 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.27 E-value=0.0081 Score=52.11 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998886
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.27 E-value=0.0085 Score=52.11 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999998875
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.26 E-value=0.0067 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999998875
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.23 E-value=0.0093 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999998876
No 174
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.23 E-value=0.0092 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 175
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.23 E-value=0.011 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998873
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.23 E-value=0.0083 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 177
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.20 E-value=0.019 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.7
Q ss_pred eEEEEEeecCCcchhHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLA 200 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v 200 (468)
..+..|+|.+|+|||++|...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHH
Confidence 347789999999999999664
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.20 E-value=0.0088 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+.+++|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999884
No 179
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.18 E-value=0.058 Score=53.22 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=29.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFE 223 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 223 (468)
...+++|+|..|+|||||++.+... .. ...+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 4679999999999999999988763 22 123455554444443
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.18 E-value=0.0068 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=16.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.01 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.16 E-value=0.0088 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 183
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.01 Score=53.68 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998876
No 184
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.12 E-value=0.009 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 185
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.10 E-value=0.0069 Score=51.74 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 186
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.09 E-value=0.011 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998875
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.08 E-value=0.075 Score=49.86 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988876
No 188
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.07 E-value=0.012 Score=54.97 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+++|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999998876
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.011 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 190
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.02 E-value=0.012 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999998876
No 191
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.02 E-value=0.015 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.-.+++|+|+.|+|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 192
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.02 E-value=0.0081 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 193
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.02 E-value=0.013 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.075 Score=52.48 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=32.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
.-.++.|.|.+|+|||||+..++....... =..++|++... +..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 345899999999999999988876432211 12477777654 334444443
No 195
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.00 E-value=0.067 Score=46.19 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=30.1
Q ss_pred EEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 182 VISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.|+|=|..|+||||.++.+.+. ....-..++...-+......+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 4788899999999999998873 333222344444443334444444444
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.99 E-value=0.012 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|.|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 197
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.99 E-value=0.12 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|.|+|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999977775
No 198
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.98 E-value=0.012 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998886
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.97 E-value=0.012 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|+.|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 200
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.95 E-value=0.012 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 201
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.95 E-value=0.015 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998876
No 202
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.94 E-value=0.011 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 203
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.94 E-value=0.1 Score=52.27 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=34.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
.-.++.|.|.+|+||||||.+++.+...+ +=..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 34588999999999999998877642222 112477887655 3455555544
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.90 E-value=0.012 Score=50.52 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.90 E-value=0.02 Score=54.05 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=28.0
Q ss_pred chHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 160 DEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 160 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.-.+++++.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 6 ~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 334555555532221 23456789999999999999998876
No 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.89 E-value=0.035 Score=47.69 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.88 E-value=0.01 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998876
No 208
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.88 E-value=0.0085 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 209
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.86 E-value=0.016 Score=53.25 Aligned_cols=24 Identities=46% Similarity=0.760 Sum_probs=21.5
Q ss_pred CCeEEEEEeecCCcchhHHHHHHh
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAY 201 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~ 201 (468)
..+.+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999887
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.85 E-value=0.013 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998876
No 211
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.84 E-value=0.012 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.83 E-value=0.077 Score=52.22 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=34.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
...++.|.|.+|+|||+||..++.+..... =..++|++... +..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHH
Confidence 345899999999999999988876432211 12477877654 44556555543
No 213
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.82 E-value=0.014 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999988875
No 214
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.80 E-value=0.043 Score=63.03 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
..+.+.|+|++|+|||+||.++..... .+=..++|+++.+.++... ++.++.... ...+.++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456899999999999999988876322 2222477888887766655 333431110 1122345555555
Q ss_pred HHh-CCCcEEEEEeccC
Q 043083 254 RSI-EGKKFFLVLDDVW 269 (468)
Q Consensus 254 ~~l-~~k~~LlVlDdv~ 269 (468)
... ..+..+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 554 3567899999994
No 215
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.79 E-value=0.028 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 216
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.78 E-value=0.014 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 217
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.78 E-value=0.087 Score=51.76 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHhhccC----
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEGLDES---- 238 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 238 (468)
+.++.|..-. .-..++|.|.+|+|||+|+..+.+.. .+.+-+.++++-++... +..++..++...-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 5666665433 33468999999999999998887631 12344677888888765 4566777766531111
Q ss_pred ----------CCChhh-----HHHHHHHHHHHh---CCCcEEEEEecc
Q 043083 239 ----------ASSLSE-----FQSLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 239 ----------~~~~~~-----~~~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
..+... .....-.+.+++ +++.+||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 001010 112223344555 368999999998
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.76 E-value=0.039 Score=51.97 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHhCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRSIEGKK 260 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 260 (468)
.+++|+|+.|+|||||++.+..- . ..-...+.+.-......... -..+..-.. .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~----~~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH----KNYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC----SSEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc----hhEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 47999999999999999988863 1 11234454442221110000 000000000 11223445667777788
Q ss_pred EEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhH
Q 043083 261 FFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESV 301 (468)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 301 (468)
-+|++|+.-.. ..++ +...+..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~~--e~~~-~l~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYD-FYNVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHH-HHHHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHH-HHHHHhcC--CCEEEEEEcccHH
Confidence 89999998542 2233 23333332 2236666665443
No 219
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.011 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 220
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.72 E-value=0.014 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.099 Score=46.43 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=46.8
Q ss_pred EEEEEeecCCcchhHHHHHHhcC-hhcccccC-ceEEEEeCCCcCHHHHHHHHHHhhccCC----------------CC-
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN-DEVKRNFE-NVIWVCVSDTFEEIRVAKAIIEGLDESA----------------SS- 241 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------~~- 241 (468)
+.+.|+|+.|+||||+.....-+ ........ ..+.+..........+...+...++... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999877544322 11112222 2333333433333444444544433211 00
Q ss_pred ---hhhHHHHHHHHHHHhCCCcEEEEEeccCC
Q 043083 242 ---LSEFQSLMSHIHRSIEGKKFFLVLDDVWD 270 (468)
Q Consensus 242 ---~~~~~~l~~~l~~~l~~k~~LlVlDdv~~ 270 (468)
..+.+.+...+...+.+ --+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 12355666666554433 34789999975
No 222
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.70 E-value=0.012 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998886
No 223
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.062 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=31.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHH
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAI 231 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 231 (468)
-.++.|.|.+|+|||+||.+++.+. ....-..+++++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 4589999999999999998765421 122223466766554 344444443
No 224
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.67 E-value=0.017 Score=51.85 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+..|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998875
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.67 E-value=0.018 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.67 E-value=0.11 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.284 Sum_probs=20.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++.|+|++|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987775
No 227
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.67 E-value=0.014 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 228
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.66 E-value=0.017 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.++|+|.|-||+||||.+-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3678999999999999999966554
No 229
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.66 E-value=0.015 Score=51.04 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 230
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.62 E-value=0.13 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.61 E-value=0.018 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.55 E-value=0.23 Score=49.46 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988774
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.54 E-value=0.017 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.54 E-value=0.018 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 235
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.53 E-value=0.017 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.51 E-value=0.018 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.026 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999888764
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.47 E-value=0.13 Score=48.18 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988776
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.47 E-value=0.017 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998875
No 240
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.45 E-value=0.16 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.44 E-value=0.13 Score=47.43 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999988776
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.42 E-value=0.029 Score=56.62 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-.++.|.|++|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988763
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.41 E-value=0.019 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.6
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999876
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.40 E-value=0.023 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 245
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.38 E-value=0.16 Score=49.78 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHHHHh
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAIIEG 234 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~ 234 (468)
+.++.|..-. .-..++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+++.. +..++..++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 6677775332 34568999999999999998887631 12233557777787754 455666666654
No 246
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.38 E-value=0.017 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888763
No 247
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.36 E-value=0.022 Score=54.13 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCc-eEEEEeCCC
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFEN-VIWVCVSDT 221 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~ 221 (468)
-+.++.|..-. .-..++|+|.+|+|||+|++.+.+.... .+-+. ++++-+++.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 46777776433 3446899999999999999988873211 12222 345666654
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.014 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=16.2
Q ss_pred eEEEEEeecCCcchhHHHHHHh-c
Q 043083 180 LYVISLVGLGGIGKTILAQLAY-N 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~-~ 202 (468)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999988 5
No 249
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.34 E-value=0.024 Score=50.02 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999888763
No 250
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.29 E-value=0.098 Score=51.45 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHH-HHHhcChhcccccCc-eEEEEeCCCc-CHHHHHHHHHHhhccC--
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILA-QLAYNNDEVKRNFEN-VIWVCVSDTF-EEIRVAKAIIEGLDES-- 238 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-- 238 (468)
+.++.|..-. .-..++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++.. +..++...+...-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 5677665433 3346889999999999996 5777732 2443 4677777754 4455555555421111
Q ss_pred -----CCChhhHHH-----HHHHHHHHh--CCCcEEEEEecc
Q 043083 239 -----ASSLSEFQS-----LMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 239 -----~~~~~~~~~-----l~~~l~~~l--~~k~~LlVlDdv 268 (468)
..+.....+ ..-.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 112233444 589999999998
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.23 E-value=0.021 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999875
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.20 E-value=0.022 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 253
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.18 E-value=0.017 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998886
No 254
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.16 E-value=0.034 Score=48.02 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+.|+|++|+|||++|..+++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888773
No 255
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.13 E-value=0.083 Score=52.03 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=56.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHH-HHHhcChhcccccCc-eEEEEeCCCc-CHHHHHHHHHHhhccC--
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILA-QLAYNNDEVKRNFEN-VIWVCVSDTF-EEIRVAKAIIEGLDES-- 238 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-- 238 (468)
+.++.|..-. .-..++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++.. +..++...+...-...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 5667665332 2346899999999999996 5777742 2443 5677777754 4555666655421111
Q ss_pred -----CCChhhHHH-----HHHHHHHHh--CCCcEEEEEecc
Q 043083 239 -----ASSLSEFQS-----LMSHIHRSI--EGKKFFLVLDDV 268 (468)
Q Consensus 239 -----~~~~~~~~~-----l~~~l~~~l--~~k~~LlVlDdv 268 (468)
..+.....+ ..-.+.+++ +++.+||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111111111 112333444 589999999999
No 256
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.11 E-value=0.025 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999998876
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.10 E-value=0.023 Score=49.30 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998876
No 258
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.10 E-value=0.025 Score=49.62 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.10 E-value=0.023 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999888863
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.08 E-value=0.024 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.08 E-value=0.024 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999876
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.06 E-value=0.024 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999876
No 263
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.06 E-value=0.29 Score=58.31 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=74.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH-hCCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASSLSEFQSLMSHIHRS-IEGK 259 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~k 259 (468)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+...+-..+......... +-.- -.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 468899999999999997766531 122 245677777666666555544433211000000 0000 0367
Q ss_pred cEEEEEeccCCCCccC------hhhhHhhhcCCC-----C-------CcEEEEecCChh------HH-hhhCCCCeeeCC
Q 043083 260 KFFLVLDDVWDGDYNK------WEPFFLYLKNGL-----H-------GSKILVTTRNES------VA-HMMGSTNIIFIE 314 (468)
Q Consensus 260 ~~LlVlDdv~~~~~~~------~~~l~~~l~~~~-----~-------gs~ilvTtR~~~------v~-~~~~~~~~~~l~ 314 (468)
++++.+||+.-...+. .+.+...+..++ . +..+|.++.... +. ........+.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 8899999974433332 233444443221 1 233444543321 11 111223567888
Q ss_pred CCChHHHHHHHHHhh
Q 043083 315 QLAEEECCSLLERLA 329 (468)
Q Consensus 315 ~L~~~e~~~Lf~~~a 329 (468)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888887654
No 264
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.05 E-value=0.024 Score=50.07 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.|.|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 265
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.04 E-value=0.025 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998886
No 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.03 E-value=0.067 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58899999999999999888763
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.01 E-value=0.025 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999876
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.00 E-value=0.027 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999887
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.99 E-value=0.021 Score=50.08 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 270
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.99 E-value=0.18 Score=44.91 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccC-C----------CC--hhhHHHHH
Q 043083 183 ISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDES-A----------SS--LSEFQSLM 249 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~----------~~--~~~~~~l~ 249 (468)
+.|+|+.|.|||.+|..+... . . ..++++. ....-..++...+.. ++.. . .. ..+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 788999999999999777652 1 1 1244443 221112222222222 2111 0 00 12233333
Q ss_pred HHHHHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecC
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTR 297 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 297 (468)
.... .+.++--+||+|+++......+..+...++ ...++++|..
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333 233445699999998866566666655543 2445665654
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.98 E-value=0.028 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 272
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.97 E-value=0.026 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998886
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.97 E-value=0.026 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 274
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.97 E-value=0.03 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999888763
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.93 E-value=0.037 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998864
No 276
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.93 E-value=0.48 Score=45.52 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=31.6
Q ss_pred ceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 154 EVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 154 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|....++++.+.+..... .... |.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHH
Confidence 356666667777666544332 1233 58999999999999998876
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.93 E-value=0.088 Score=60.58 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=56.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
...++.|.|++|+||||||.+++.... ..=..++|++....++... ++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999988876432 2223588998888776542 444544321 2245566666666
Q ss_pred HHh-CCCcEEEEEeccCC
Q 043083 254 RSI-EGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l-~~k~~LlVlDdv~~ 270 (468)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34566999998854
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.92 E-value=0.036 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999988764
No 279
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.90 E-value=0.032 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999988876
No 280
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.90 E-value=0.028 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998873
No 281
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.89 E-value=0.15 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..|+|-|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999988873
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.88 E-value=0.027 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.88 E-value=0.017 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 284
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.88 E-value=0.026 Score=47.97 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998873
No 285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.88 E-value=0.028 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.87 E-value=0.034 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|+|+|+.|+|||||+..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.87 E-value=0.079 Score=60.11 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=55.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-+++.|.|++|+||||||.+++.... ..=..++|++....++... ++.++.... ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 456899999999999999988876422 2223588998888776542 444443211 1234556666565
Q ss_pred HHh-CCCcEEEEEeccCC
Q 043083 254 RSI-EGKKFFLVLDDVWD 270 (468)
Q Consensus 254 ~~l-~~k~~LlVlDdv~~ 270 (468)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34566999999854
No 288
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.86 E-value=0.047 Score=52.04 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+++..+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 344555554322 3578999999999999999988765
No 289
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.85 E-value=0.061 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998873
No 290
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.83 E-value=0.028 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999886
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.83 E-value=0.03 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 292
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.82 E-value=0.028 Score=51.32 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCC--CCCcEEEEecCChhHHh
Q 043083 250 SHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNG--LHGSKILVTTRNESVAH 303 (468)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 303 (468)
-.|.+.|-.++-+|+||+.-.. +...-..+...+... ..|..||++|.+.....
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 3455666677789999987432 222223344445432 23667888888877654
No 293
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.80 E-value=0.029 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999876
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.78 E-value=0.029 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998763
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.051 Score=48.50 Aligned_cols=39 Identities=33% Similarity=0.322 Sum_probs=27.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD 220 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 220 (468)
-.++.|.|++|+|||||+.+++.... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 45899999999999999977765321 1223477877655
No 296
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.72 E-value=0.32 Score=52.19 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=65.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccC---ceEEEEeCCC-------cCHH-----------HHHHHHHHhhccCC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFE---NVIWVCVSDT-------FEEI-----------RVAKAIIEGLDESA 239 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~-------~~~~-----------~~~~~i~~~l~~~~ 239 (468)
.+++|+|+.|+|||||.+.+..- .+. .++ ..-.+.+.+. .+.. .-..++++.++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 48999999999999999998731 110 111 0001112211 1211 22334455554321
Q ss_pred -------CChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcCCCCCcEEEEecCChhHHhhhC
Q 043083 240 -------SSLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKNGLHGSKILVTTRNESVAHMMG 306 (468)
Q Consensus 240 -------~~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 306 (468)
...+.-+...-.|.+.|-.++-+|+||.--+. +...-..+...+.. .|..||++|.+......+.
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 11222233334455666667789999987442 22233345555555 3667888888876655433
No 297
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.71 E-value=0.031 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 298
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.71 E-value=0.032 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|.|+|+.|+||||||..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998886
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.70 E-value=0.037 Score=50.17 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=54.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCC-CcCHHHHHHHHHH--hhccCCCChhhHHHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSD-TFEEIRVAKAIIE--GLDESASSLSEFQSLMSHIHRS 255 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~l~~~l~~~ 255 (468)
.-.+++|+|+.|+|||||.+.+..- ....+...+++.-.. .+-.... ..++. .++.. . ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~---~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED---T---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT---B---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCC---H---HHHHHHHHHH
Confidence 3468999999999999999988762 211123333322110 0000000 00000 00000 0 1223455566
Q ss_pred hCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH
Q 043083 256 IEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA 302 (468)
Q Consensus 256 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 302 (468)
|..++=+|++|..- +......+.... ..|.-|++||......
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 65567788899985 222222222222 2366688888776543
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.69 E-value=0.031 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999876
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.67 E-value=0.031 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999876
No 302
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.63 E-value=0.067 Score=52.03 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc-cccC-ceEEEEeCCCc-CHHHHHHHHHHhhcc---
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK-RNFE-NVIWVCVSDTF-EEIRVAKAIIEGLDE--- 237 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--- 237 (468)
+.++.|..-. .-..++|.|.+|+|||+|+.++.+..... ++-+ .++++-+++.. +..++..++...-..
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rt 214 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRS 214 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGE
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccce
Confidence 5666665433 22347889999999999999888743321 1111 46666676643 455666665442100
Q ss_pred ----CCCChhhHH-----HHHHHHHHHh---CCCcEEEEEecc
Q 043083 238 ----SASSLSEFQ-----SLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 238 ----~~~~~~~~~-----~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
...+..... ...-.+.+++ .++.+||++||+
T Consensus 215 vvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 215 VMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 011111111 1122344454 378999999999
No 303
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.62 E-value=0.044 Score=49.53 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567889999999999999988874
No 304
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.61 E-value=0.036 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999998886
No 305
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.61 E-value=0.039 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.155 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999998886
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.60 E-value=0.039 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999888764
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.58 E-value=0.035 Score=51.42 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999998875
No 308
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.56 E-value=0.1 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998873
No 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.56 E-value=0.053 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998874
No 310
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.52 E-value=0.044 Score=52.51 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=31.8
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++|....+.++...+..... ....|.|.|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 3577877666666555432221 1223779999999999999988863
No 311
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.49 E-value=0.067 Score=52.03 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcc--------cccC-ceEEEEeCCCc-CHHHHHHHHHH
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVK--------RNFE-NVIWVCVSDTF-EEIRVAKAIIE 233 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~ 233 (468)
+.++.|..-. .-..++|.|.+|+|||+|+.++.+..... ++-+ .++++-+++.. +..++..++..
T Consensus 136 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 5666665433 23357889999999999999888753331 1112 46666676643 45555555544
Q ss_pred hhcc-------CCCChhhHH-----HHHHHHHHHh---CCCcEEEEEecc
Q 043083 234 GLDE-------SASSLSEFQ-----SLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 234 ~l~~-------~~~~~~~~~-----~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
.-.. ...+..... ...-.+.+++ +++.+||++||+
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2100 011111111 1122344444 378999999999
No 312
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.47 E-value=0.27 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=32.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIE 233 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 233 (468)
..|.|.|..|+||||+++.+.+... ...+..+....-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999887422 223433444433333334444555544
No 313
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.46 E-value=0.084 Score=51.99 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=48.4
Q ss_pred eEEEEEeecCCcchhHHH-HHHhcChhcccccCc-eEEEEeCCCc-CHHHHHHHHHHhhcc--------CCCCh------
Q 043083 180 LYVISLVGLGGIGKTILA-QLAYNNDEVKRNFEN-VIWVCVSDTF-EEIRVAKAIIEGLDE--------SASSL------ 242 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~------ 242 (468)
-..++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++.. +..++...+...-.. ..+..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 345789999999999996 5777742 2343 5677777754 344454444332110 01110
Q ss_pred --hhHHHHHHHHHHHhCCCcEEEEEecc
Q 043083 243 --SEFQSLMSHIHRSIEGKKFFLVLDDV 268 (468)
Q Consensus 243 --~~~~~l~~~l~~~l~~k~~LlVlDdv 268 (468)
...-.+.+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 011122333433 589999999998
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.44 E-value=0.035 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988864
No 315
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.43 E-value=0.055 Score=52.85 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=33.9
Q ss_pred CceeeccchHHHHHHHhhcC--------CCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 153 GEVCGRVDEKNELLSKLLCE--------SSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..++|-++.++.+...+... ........+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788777777776555221 000011345689999999999999999887
No 316
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.40 E-value=0.041 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998876
No 317
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.38 E-value=0.075 Score=51.97 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhccccc--CceEEEEeCCCc-CHHHHHHHHHHhhccC--
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNF--ENVIWVCVSDTF-EEIRVAKAIIEGLDES-- 238 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-- 238 (468)
+.++.|..-. .-..++|.|.+|+|||+|+..++++......- +.++++-+++.. +..++..++...-...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 5677665433 23356788999999999999888753332211 245666666643 4556666665431111
Q ss_pred -----CCChhhHH-----HHHHHHHHHh---CCCcEEEEEecc
Q 043083 239 -----ASSLSEFQ-----SLMSHIHRSI---EGKKFFLVLDDV 268 (468)
Q Consensus 239 -----~~~~~~~~-----~l~~~l~~~l---~~k~~LlVlDdv 268 (468)
..+..... ...-.+.+++ +++.+||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111111 1112233444 379999999998
No 318
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.36 E-value=0.23 Score=48.70 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=32.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAII 232 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 232 (468)
...++.|.|.+|+||||||..++.+...+ . ..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999998887643322 1 2477776554 3334444443
No 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.36 E-value=0.041 Score=50.42 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=59.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccc--------cCceEEEEeCCCcCHH-HHHHH------------HHHhhccC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRN--------FENVIWVCVSDTFEEI-RVAKA------------IIEGLDES 238 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~~~~-~~~~~------------i~~~l~~~ 238 (468)
-.++.|+|++|+|||||+..++........ -..+++++........ .-... +++.+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l~ 109 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQ 109 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEEC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceEEe
Confidence 358999999999999999887752221100 1236677766543211 01111 12222221
Q ss_pred CC-----ChhhHHHHHHHHHHHhCCCcEEEEEeccCC--C-CccCh---hhhHhhhcCC--CCCcEEEEecCChhH
Q 043083 239 AS-----SLSEFQSLMSHIHRSIEGKKFFLVLDDVWD--G-DYNKW---EPFFLYLKNG--LHGSKILVTTRNESV 301 (468)
Q Consensus 239 ~~-----~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~--~-~~~~~---~~l~~~l~~~--~~gs~ilvTtR~~~v 301 (468)
.. ...+..+ .+.+...+. +.-+||||.+-. . +.... ..+...|... ..|+.||++|.....
T Consensus 110 ~~~~~~~~~ls~g~-~~~i~~l~~-~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 110 PLIGSLPNIMAPEW-FDGLKRAAE-GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp CCTTSCCCTTSHHH-HHHHHHHHT-TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred ecCCCCcccCCHHH-HHHHHHhcC-CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 11 1111222 334444444 356899999855 1 11111 3344444321 236778888876543
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.32 E-value=0.047 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999988763
No 321
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.32 E-value=0.058 Score=52.72 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+.+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999877763
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.27 E-value=0.048 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998853
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.25 E-value=0.041 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3466899999999999999998875
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.23 E-value=0.041 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.22 E-value=0.036 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999876
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.20 E-value=0.058 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.20 E-value=0.044 Score=45.10 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.5
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988764
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.18 E-value=0.045 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999886
No 329
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.049 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 330
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.14 E-value=0.12 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.....|.|.|..|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998874
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.13 E-value=0.046 Score=56.17 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=34.4
Q ss_pred CceeeccchHHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35789888777777666432 37899999999999999999873
No 332
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.10 E-value=0.19 Score=49.31 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=55.7
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHH-HHHhcChhcccccCc-eEEEEeCCCc-CHHHHHHHHHHhhccC--
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILA-QLAYNNDEVKRNFEN-VIWVCVSDTF-EEIRVAKAIIEGLDES-- 238 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-- 238 (468)
+.++.|..-. .-..++|.|..|+|||+|+ ..+.+. .+-+. ++++-+++.. +..++...+...-...
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 5677775433 2346789999999999996 567663 23333 5788888754 4455555554421111
Q ss_pred -----CCChhhHHH-----HHHHHHHHh--CCCcEEEEEeccC
Q 043083 239 -----ASSLSEFQS-----LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 239 -----~~~~~~~~~-----l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
..+.....+ ..-.+.+++ +++..||++||+-
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 111111111 111233333 6899999999993
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.09 E-value=0.58 Score=49.36 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=45.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC--------------C-----
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS--------------S----- 241 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------~----- 241 (468)
.++.|+|+.|+||||++..+.........-...+.+......-..++...+...++.... .
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 479999999999999765554321111111223444343332233344444444322110 0
Q ss_pred hhhHHHHHHHHHH-HhCCCcEEEEEeccCC
Q 043083 242 LSEFQSLMSHIHR-SIEGKKFFLVLDDVWD 270 (468)
Q Consensus 242 ~~~~~~l~~~l~~-~l~~k~~LlVlDdv~~ 270 (468)
..+.+.+...+.. .+-.+--+||||+++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 1223444443333 2234556999999974
No 334
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.05 E-value=0.18 Score=49.65 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHH-HHHhcChhc----ccccCc-eEEEEeCCCc-CHHHHHHHHHHhhc
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILA-QLAYNNDEV----KRNFEN-VIWVCVSDTF-EEIRVAKAIIEGLD 236 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~----~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~ 236 (468)
+.++.|..-. .-..++|.|.+|+|||+|| ..+.+.... .++-+. ++++-+++.. +..++...+...-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 5677775433 3346789999999999995 567764321 122343 6777787754 45556655554211
Q ss_pred cC-------CCChhhHHH-----HHHHHHHHh--CCCcEEEEEeccC
Q 043083 237 ES-------ASSLSEFQS-----LMSHIHRSI--EGKKFFLVLDDVW 269 (468)
Q Consensus 237 ~~-------~~~~~~~~~-----l~~~l~~~l--~~k~~LlVlDdv~ 269 (468)
.. ..+.....+ ..-.+.+++ +++.+||++||+-
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 10 111111111 112233444 5899999999993
No 335
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.01 E-value=0.063 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988864
No 336
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.01 E-value=0.048 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998863
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.97 E-value=0.055 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+.+|+|+.|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988764
No 338
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.95 E-value=0.28 Score=47.71 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 177 QQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 177 ~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35688999999999999999988875
No 339
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.94 E-value=0.049 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.069 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998886
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.93 E-value=0.06 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999988764
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.91 E-value=0.12 Score=45.91 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=26.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEe
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCV 218 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 218 (468)
..+|.|.|+.|+||||+++.+.+... ...++.+....-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~re 64 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTRE 64 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecC
Confidence 45899999999999999999887422 234553444443
No 342
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.91 E-value=0.21 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998875
No 343
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.90 E-value=0.048 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988753
No 344
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.89 E-value=0.07 Score=44.47 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988764
No 345
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.88 E-value=0.12 Score=44.98 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCCC--hhhHHHHHHHHHHHh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESASS--LSEFQSLMSHIHRSI 256 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l 256 (468)
...+..++|..|.||||.+......... ......+ +.... +...-...+.+.++..... ..+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEE-EECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3468889999999999999665553222 2223333 32111 1111112333333322110 01111 122223
Q ss_pred CCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 257 EGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
.++--+|++|.+...+.+.++.+ ..+.+ .|..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 33334999999976544444333 33222 2678999998654
No 346
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.83 E-value=0.07 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999998864
No 347
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.79 E-value=0.072 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998864
No 348
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.78 E-value=0.085 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888764
No 349
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.75 E-value=0.069 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 350
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.75 E-value=0.12 Score=47.68 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 163 NELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 163 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 44455554332212235668999999999999999998865
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.055 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988764
No 352
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.72 E-value=0.055 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 353
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.71 E-value=0.062 Score=49.70 Aligned_cols=24 Identities=38% Similarity=0.253 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999888763
No 354
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.64 E-value=0.056 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988764
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.62 E-value=0.057 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 34899999999999999999886
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.61 E-value=0.072 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999988875
No 357
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.60 E-value=0.053 Score=46.12 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.58 E-value=0.081 Score=43.84 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999888764
No 359
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.57 E-value=0.063 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988874
No 360
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.56 E-value=0.36 Score=48.00 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=40.7
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcC-HHHHHHHH
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFE-EIRVAKAI 231 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 231 (468)
+.++.|..-. .-..++|.|..|+|||+|++.+.+. .+-+.++++-+++..+ ..++..++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 5677775332 3457899999999999999988762 2234678888887654 44555554
No 361
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.54 E-value=0.17 Score=54.39 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=19.9
Q ss_pred CeEEEEEeecCCcchhHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLA 200 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v 200 (468)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.53 E-value=0.06 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 35899999999999999999886
No 363
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.52 E-value=0.056 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988764
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.50 E-value=0.057 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888754
No 365
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.50 E-value=0.096 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.50 E-value=0.06 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888764
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.48 E-value=0.061 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999876
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.45 E-value=0.079 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888764
No 369
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.45 E-value=0.064 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|.|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 370
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.44 E-value=0.061 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999888764
No 371
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.44 E-value=0.082 Score=49.05 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHh
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAY 201 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~ 201 (468)
+++|.+.+. -.+++|+|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 567777663 2478999999999999999887
No 372
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.43 E-value=0.061 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999877654
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.43 E-value=0.055 Score=51.21 Aligned_cols=125 Identities=17% Similarity=0.154 Sum_probs=64.2
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcc-c--ccC------------ceEEEEeCC----CcCHH---------------H
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVK-R--NFE------------NVIWVCVSD----TFEEI---------------R 226 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~wv~~~~----~~~~~---------------~ 226 (468)
.+++|+|+.|+|||||.+.++.-.... + .|+ .+.+|.-.. ..++. +
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 489999999999999999988632110 0 011 122332110 11221 1
Q ss_pred HHHHHHHhhccCCC------ChhhHHHHHHHHHHHhCCCcEEEEEeccCCC-CccChhhhHhhhcC--CCCCcEEEEecC
Q 043083 227 VAKAIIEGLDESAS------SLSEFQSLMSHIHRSIEGKKFFLVLDDVWDG-DYNKWEPFFLYLKN--GLHGSKILVTTR 297 (468)
Q Consensus 227 ~~~~i~~~l~~~~~------~~~~~~~l~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR 297 (468)
-..++++.++.... ..+.-++-.-.|.+.|-.++-+|+||.--.. |...-..+...+.. ...|..||++|.
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 22334444443211 1222333344566777788889999986432 11112223333322 122566888888
Q ss_pred ChhHHhhh
Q 043083 298 NESVAHMM 305 (468)
Q Consensus 298 ~~~v~~~~ 305 (468)
+...+..+
T Consensus 187 d~~~~~~~ 194 (348)
T 3d31_A 187 DQTEARIM 194 (348)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 86655443
No 374
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.41 E-value=0.044 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....|+|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988776
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.37 E-value=0.066 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999888754
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.37 E-value=0.086 Score=44.61 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.36 E-value=0.064 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999886
No 378
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.36 E-value=0.08 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998875
No 379
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.35 E-value=0.061 Score=44.34 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=18.3
Q ss_pred EEEeecCCcchhHHHHHHhc
Q 043083 183 ISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~ 202 (468)
|+|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999988865
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.34 E-value=0.076 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999998875
No 381
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.33 E-value=0.065 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999876
No 382
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.28 E-value=0.075 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.0
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578899999999999999977765
No 383
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.24 E-value=0.07 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998875
No 384
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.23 E-value=0.084 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988763
No 385
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.22 E-value=0.47 Score=47.39 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCc-CHHHHHHHH
Q 043083 164 ELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTF-EEIRVAKAI 231 (468)
Q Consensus 164 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 231 (468)
+.++.|..-. .-..++|.|..|+|||+|+.++.+. .+-+.++++-+++.. +..+++.++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 6777776433 3457899999999999999988863 123567777777653 444555443
No 386
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.22 E-value=0.057 Score=45.34 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999888764
No 387
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.21 E-value=0.047 Score=47.35 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999887754
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.21 E-value=0.19 Score=57.00 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=57.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC-----ChhhHHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS-----SLSEFQSLMSHIH 253 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 253 (468)
.-++|-|+|+.|+||||||.++.. ..+..=...+|+...+..++.- ++.++...+ .+...++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 357999999999999999988886 3333434588998888777653 555555422 1233355555555
Q ss_pred HHhC-CCcEEEEEecc
Q 043083 254 RSIE-GKKFFLVLDDV 268 (468)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (468)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6664 55669999988
No 389
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.21 E-value=0.075 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999998876
No 390
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.21 E-value=0.087 Score=49.04 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 177 QQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 177 ~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356889999999999999999988764
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.20 E-value=0.052 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.20 E-value=0.083 Score=44.16 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4557899999999999999988754
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.18 E-value=0.099 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.17 E-value=0.068 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888764
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.17 E-value=0.08 Score=49.95 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 396
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.15 E-value=0.069 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988763
No 397
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.094 Score=45.31 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988754
No 398
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.04 E-value=0.076 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999988764
No 399
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.04 E-value=0.07 Score=44.15 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999888753
No 400
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.03 E-value=0.077 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.-|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 401
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.03 E-value=0.074 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=19.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999988763
No 402
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.01 E-value=0.078 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.00 E-value=0.078 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35899999999999999999875
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.96 E-value=0.094 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999888753
No 405
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.93 E-value=0.083 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 446889999999999999877763
No 406
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.92 E-value=0.071 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...-|+|+|.+|+|||||++.+.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999977665
No 407
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.91 E-value=0.076 Score=44.91 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988764
No 408
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.89 E-value=0.04 Score=47.29 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=52.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC--ChhhHHHHHHHHHHHhC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS--SLSEFQSLMSHIHRSIE 257 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l~ 257 (468)
..+..++|..|.||||.+....+... .......++-+.-.. ..-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 46899999999999999966665322 222333332211110 0001112222221100 001111 2333333
Q ss_pred CCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChh
Q 043083 258 GKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNES 300 (468)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 300 (468)
++-=+|++|.+...+...++.+....+ .|..||+|.++.+
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 333499999986644333333333222 2678999988653
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.88 E-value=0.11 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999988764
No 410
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.85 E-value=0.1 Score=43.62 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999988764
No 411
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.83 E-value=0.077 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEeecCCcchhHHHHHHhc
Q 043083 182 VISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~ 202 (468)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999998765
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.80 E-value=0.084 Score=45.32 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998853
No 413
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.80 E-value=0.1 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999988754
No 414
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.77 E-value=0.091 Score=50.34 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcChhcccccCceE-EEEeCCCcCHHHHHHH---HHHh--hccCCCChhhHHHHHHHH
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNNDEVKRNFENVI-WVCVSDTFEEIRVAKA---IIEG--LDESASSLSEFQSLMSHI 252 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~---i~~~--l~~~~~~~~~~~~l~~~l 252 (468)
...+++|+|+.|+|||||++.+... ........+ ++.. +... .... ++.+ ++.. . ..+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~--~~e~--~~~~~~~~v~Q~~~g~~---~---~~~~~~l 202 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED--PIEY--VFKHKKSIVNQREVGED---T---KSFADAL 202 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEES--SCCS--CCCCSSSEEEEEEBTTT---B---SCSHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecc--cHhh--hhccCceEEEeeecCCC---H---HHHHHHH
Confidence 3468999999999999999988762 211112222 2221 1110 0000 0000 0000 0 1223456
Q ss_pred HHHhCCCcEEEEEeccCCCCccChhhhHhhhcCCCCCcEEEEecCChhHH
Q 043083 253 HRSIEGKKFFLVLDDVWDGDYNKWEPFFLYLKNGLHGSKILVTTRNESVA 302 (468)
Q Consensus 253 ~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 302 (468)
...|...+-+|++|.+.+ ......+... ...|..|+.|+...++.
T Consensus 203 ~~~L~~~pd~illdE~~d--~e~~~~~l~~---~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNTAI 247 (372)
T ss_dssp HHHTTSCCSEEEESCCCS--HHHHHHHHHH---HTTTCEEEECCCCCSHH
T ss_pred HHHhhhCcCEEEECCCCC--HHHHHHHHHH---HhcCCEEEEEECcchHH
Confidence 667766777899999953 2222222222 23466688888776543
No 415
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.77 E-value=0.11 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.75 E-value=0.12 Score=43.41 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557899999999999999988864
No 417
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.73 E-value=0.15 Score=46.04 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=25.3
Q ss_pred HHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhc
Q 043083 165 LLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 165 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+..||.... +....+.|+|++|+|||.+|..+.+
T Consensus 93 l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 555554321 2345699999999999999998887
No 418
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.72 E-value=0.11 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3557899999999999999888764
No 419
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.72 E-value=0.082 Score=44.54 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.4
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888754
No 420
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.71 E-value=0.11 Score=48.23 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 162 KNELLSKLLCESSEQQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 162 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
++++...+. -.+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 667777663 237899999999999999998863
No 421
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.69 E-value=0.091 Score=52.32 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+...+|.+.|++|+||||+|+.+...
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 422
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.69 E-value=0.1 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46788899999999999977765
No 423
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.68 E-value=0.1 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988875
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.68 E-value=0.087 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988764
No 425
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.67 E-value=0.098 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999988764
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.65 E-value=0.085 Score=44.47 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999988764
No 427
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.64 E-value=0.16 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+...+|.|.|++|+||||+|+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 4567899999999999999998886
No 428
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.64 E-value=0.085 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999888764
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.63 E-value=0.086 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999888764
No 430
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.62 E-value=0.26 Score=43.22 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=53.9
Q ss_pred EEEEEeecCCcchhHHHHHHhcChhcccccCceEEEEeCCCcCHHHHHHHHHHhhccCCC----------ChhhHHHHHH
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDEVKRNFENVIWVCVSDTFEEIRVAKAIIEGLDESAS----------SLSEFQSLMS 250 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~l~~ 250 (468)
-.|.+.|.||+||||++..+.... ....++ +..+.+...-+... ...+..+..... ...+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 458889999999999987776632 223343 33444443222221 112232322110 01222221
Q ss_pred HHHHHhCCCcEEEEEeccCCCC------ccChhhhHhhhcCCCCCcEEEEecCCh
Q 043083 251 HIHRSIEGKKFFLVLDDVWDGD------YNKWEPFFLYLKNGLHGSKILVTTRNE 299 (468)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~ilvTtR~~ 299 (468)
+..+.=++|+|++-..+ ...|.++...++. |..++.|+...
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 22245699999874321 1245666554443 55688887643
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.62 E-value=0.12 Score=44.44 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888754
No 432
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.61 E-value=0.11 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567999999999999999988874
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.61 E-value=0.071 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 434
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.60 E-value=0.086 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 456899999999999999999887
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.087 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999888764
No 436
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.091 Score=44.82 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 437
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.54 E-value=0.2 Score=51.30 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=26.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcChh-cccccCceEEEEeCCCc
Q 043083 181 YVISLVGLGGIGKTILAQLAYNNDE-VKRNFENVIWVCVSDTF 222 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~ 222 (468)
+++.|.|.+|+||||++..+..... ....-...+.+..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~ 207 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChh
Confidence 5899999999999999877664211 10111235666655543
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.51 E-value=0.093 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3557899999999999999988764
No 439
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.49 E-value=0.098 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999988753
No 440
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.49 E-value=0.089 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|.|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999887754
No 441
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.09 Score=44.79 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 446889999999999999888763
No 442
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.48 E-value=0.089 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3557899999999999999988864
No 443
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.47 E-value=0.087 Score=44.17 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.2
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4556899999999999999888764
No 444
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.47 E-value=0.094 Score=44.35 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988653
No 445
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.45 E-value=0.098 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988864
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.45 E-value=0.1 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 447
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.41 E-value=0.086 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999887
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.41 E-value=0.66 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-..++|+|+.|+|||||++.+...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 458999999999999999998863
No 449
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.40 E-value=0.11 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999977765
No 450
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.39 E-value=0.12 Score=48.97 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhc
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
....+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999988864
No 451
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.37 E-value=0.15 Score=43.43 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999988864
No 452
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.35 E-value=0.11 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.4
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999988865
No 453
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.34 E-value=0.12 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999888764
No 454
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.34 E-value=0.091 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999998876
No 455
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.33 E-value=0.099 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.28 E-value=0.095 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999988764
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.28 E-value=0.093 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999988754
No 458
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.28 E-value=0.14 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999998864
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.27 E-value=0.11 Score=45.38 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=20.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..--|+|+|.+|+|||||+..+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999988764
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.26 E-value=0.098 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999988764
No 461
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.24 E-value=0.13 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999888763
No 462
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.22 E-value=0.099 Score=44.61 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999988864
No 463
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.21 E-value=0.21 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 178 QGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 178 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999988764
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.18 E-value=0.15 Score=43.14 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999988853
No 465
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.17 E-value=0.11 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcchhHHHHHHhc
Q 043083 180 LYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.15 E-value=0.14 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.5
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...-|+|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999988874
No 467
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.10 E-value=0.14 Score=46.34 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3456899999999999999998864
No 468
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.10 E-value=0.14 Score=43.76 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 469
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.07 E-value=0.058 Score=55.19 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5889999999999999988874
No 470
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.07 E-value=0.11 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.06 E-value=0.098 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|..|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988764
No 472
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.06 E-value=0.13 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.05 E-value=0.11 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998863
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.03 E-value=0.11 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEeecCCcchhHHHHHHhcC
Q 043083 181 YVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 37899999999999999998863
No 475
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.03 E-value=0.11 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999988764
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.02 E-value=0.13 Score=44.39 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.01 E-value=0.14 Score=41.95 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
.+.+|+|+.|+|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999987653
No 478
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.98 E-value=0.13 Score=43.55 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999888754
No 479
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.11 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999988764
No 480
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.92 E-value=0.15 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999988875
No 481
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.91 E-value=0.15 Score=43.89 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999987754
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.86 E-value=0.11 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.7
Q ss_pred EEEEeecCCcchhHHHHHHhcC
Q 043083 182 VISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 182 vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-++|+|+.|+|||||.+.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999998763
No 483
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.83 E-value=0.15 Score=43.27 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999888764
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.12 Score=44.03 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988864
No 485
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.78 E-value=0.095 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.1
Q ss_pred eEEEEEeecCCcchhHHHHHHhcCh
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
..-|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999887653
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.76 E-value=0.12 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3557899999999999999888764
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.73 E-value=0.15 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEEeecCCcchhHHHHHHhc
Q 043083 181 YVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 181 ~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
+-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999988775
No 488
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.73 E-value=0.14 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred CeEEEEEeecCCcchhHHHHHHhc
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYN 202 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~ 202 (468)
...+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 489
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.73 E-value=0.1 Score=45.62 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.1
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcCh
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNND 204 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 204 (468)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35578999999999999999988753
No 490
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.73 E-value=0.12 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999888764
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.65 E-value=0.13 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..--|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999888754
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.63 E-value=0.11 Score=55.05 Aligned_cols=51 Identities=25% Similarity=0.245 Sum_probs=36.0
Q ss_pred CceeeccchHHHHHHHhhcCCCC-------CCCCeEEEEEeecCCcchhHHHHHHhcC
Q 043083 153 GEVCGRVDEKNELLSKLLCESSE-------QQQGLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 153 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..+.|.+..++.+.+.+...... .-.....+.++|++|+|||+||+.+++.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 45778888778777766432110 0123456889999999999999999973
No 493
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.62 E-value=0.14 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988754
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.61 E-value=0.13 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999888764
No 495
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.59 E-value=0.16 Score=45.80 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999888764
No 496
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.1 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.2
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
-.+++|+|+.|+|||||++.++.-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999988764
No 497
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.50 E-value=0.079 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=10.9
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
...-|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999887754
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.45 E-value=0.14 Score=43.33 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEeecCCcchhHHHHHHhcC
Q 043083 183 ISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 183 v~I~G~~GiGKTtLa~~v~~~ 203 (468)
+.|+|.+|+|||++|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988863
No 499
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.42 E-value=0.13 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEEeecCCcchhHHHHHHhcC
Q 043083 180 LYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 180 ~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999888754
No 500
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.41 E-value=0.18 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCcchhHHHHHHhcC
Q 043083 179 GLYVISLVGLGGIGKTILAQLAYNN 203 (468)
Q Consensus 179 ~~~vv~I~G~~GiGKTtLa~~v~~~ 203 (468)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988764
Done!