BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043086
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 96 VKTYQRNFNLNPTGHMDLKTVSMMGKPRCGVPDVINGTTRMQGGPAHYHTHYVFY----- 150
+K Q F L TG D +T+ +M +PRCGVPDV +G P TH +
Sbjct: 45 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVL-TEGNPRWEQTHLTYRIENYT 103
Query: 151 PGRPKWPATKQIISCAF------LPGTRTDVQEPDYDAADVKISFQRXXXXXXXXXXXXX 204
P P+ I AF P T T V E AD+ ISF R
Sbjct: 104 PDLPR-ADVDHAIEKAFQLWSNVTPLTFTKVSE---GQADIMISFVRGDHRDNSPFDGPG 159
Query: 205 XYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 160 --GNLAHAFQPGPGIGGDAHFDEDERWTNNF--REYNLHRVAAHELGHSLGLSH 209
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 49/187 (26%)
Query: 96 VKTYQRNFNLNPTGHMDLKTVSMMGKPRCGVPDVINGTTRMQGGPAHYHTHYVFYPGRPK 155
++ Q+ L TG +D T+ +M KPRCGVPDV H+ +PG PK
Sbjct: 47 IREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDV---------------GHFRTFPGIPK 91
Query: 156 WPAT--------------KQIISCAF----------LPGTRTDVQEPDYDAADVKISFQR 191
W T K + A P T + + E + AD+ ISF
Sbjct: 92 WRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGE---ADIMISFAV 148
Query: 192 XXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELR 248
N+LAH++ P +G H+D DE WT ++ VA HE+
Sbjct: 149 REHGDFYPFDGPG--NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 204
Query: 249 HVLGLAH 255
H LGL H
Sbjct: 205 HSLGLFH 211
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 41/164 (25%)
Query: 92 LESAVKTYQRNFNLNPTGHMDLKTVSMMGKPRCGVPDVINGTTRMQGGPAHYHTHYVFYP 151
L+ +K Q+ F L TG +D T+ M KPRCG PDV N Y F+P
Sbjct: 39 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN---------------YNFFP 83
Query: 152 GRPKWPATK--------------QIISCAFLPGTR--TDVQEPDYD-----AADVKISFQ 190
+PKW + + + AF + +DV + AD+ I+F
Sbjct: 84 RKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFG 143
Query: 191 RXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVG 231
R LLAH+F P G H+D DE WT+G
Sbjct: 144 RWEHGDGYPFDGKD--GLLAHAFAPGTGVGGDSHFDDDELWTLG 185
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 41/164 (25%)
Query: 92 LESAVKTYQRNFNLNPTGHMDLKTVSMMGKPRCGVPDVINGTTRMQGGPAHYHTHYVFYP 151
L+ +K Q+ F L TG +D T+ M KPRCG PDV N Y F+P
Sbjct: 41 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN---------------YNFFP 85
Query: 152 GRPKWPATK--------------QIISCAFLPGTR--TDVQEPDYD-----AADVKISFQ 190
+PKW + + + AF + +DV + AD+ I+F
Sbjct: 86 RKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFG 145
Query: 191 RXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVG 231
R LLAH+F P G H+D DE WT+G
Sbjct: 146 RWEHGDGYPFDGKD--GLLAHAFAPGTGVGGDSHFDDDELWTLG 187
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 171 TRTDVQEPDYDAADVKISFQRXXXXXXXXXXXXXXYNLLAHSF--PPTDGRF----HYDG 224
T + +Q + + AD+KI +++ +LAH+F PP G + H+D
Sbjct: 45 TLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT--GILAHAFYPPPAGGNYAGHLHFDD 102
Query: 225 DENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
DENW++ +D+ TVA HE+ H+LG+ H
Sbjct: 103 DENWSING--SGIDLITVAAHEIGHLLGIEH 131
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 171 TRTDVQEPDYDAADVKISFQRXXXXXXXXXXXXXXYNLLAHSF--PPTDGRF----HYDG 224
T + +Q + + AD+KI +++ +LAH+F PP G + H+D
Sbjct: 45 TLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT--GILAHAFYPPPAGGNYAGHLHFDD 102
Query: 225 DENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
DENW++ +D+ TVA HE+ H+LG+ H
Sbjct: 103 DENWSING--SGIDLITVAAHEIGHLLGIEH 131
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 169 PGTRTDVQEPDYDAADVKISFQRXXXXXXXXXXXXXXYNLLAHSFPPT---DGRFHYDGD 225
P T T+V E AD+ I F R +LAH+F P +G H+D D
Sbjct: 46 PLTFTEVHE---GRADIMIDFARYWHGDNLPFDGPG--GILAHAFFPKTHREGDVHFDYD 100
Query: 226 ENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
E WT+G G D+ VA HE HVLGL H
Sbjct: 101 ETWTIGDNQGT-DLLQVAAHEFGHVLGLQH 129
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 209 LAHSFPPTDG---RFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P +G H+D E WT+G ++ TVA HE H LGLAH
Sbjct: 77 LAHAFAPGEGLGGDTHFDNAEKWTMGT--NGFNLFTVAAHEFGHALGLAH 124
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 108 TGHMDLKTVSMMGKPRCGVPDVINGTTRMQGGPAHYHTHYVFYPGRPKWPATKQIISCAF 167
TG +D T+ M PRCGVPD+ T +G +H + ++ + +I AF
Sbjct: 64 TGELDSATLKAMRTPRCGVPDLGRFQT-FEGDLKWHHHNITYWIQNYSEDLPRAVIDDAF 122
Query: 168 L----------PGTRTDVQEPDYDAADVKISFQRXXXXXXXXXXXXXXYNLLAHSFPP-- 215
P T T V D AD+ I F LLAH+FPP
Sbjct: 123 ARAFALWSAVTPLTFTRVYSRD---ADIVIQFGVAEHGDGYPFDGKD--GLLAHAFPPGP 177
Query: 216 -TDGRFHYDGDENWTVG 231
G H+D DE W++G
Sbjct: 178 GIQGDAHFDDDELWSLG 194
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 27/133 (20%)
Query: 147 YVFYPGRPKWPA---TKQIISCAF-LPGTRTD-----------------VQEPDYDAADV 185
Y +P PKW + T +I+S LP D ++ + AD+
Sbjct: 2 YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADI 61
Query: 186 KISFQRXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTV 242
I F R N LAH+F P G H+D DE WT G+ G ++
Sbjct: 62 MIGFARGAHGDSYPFDGPG--NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLYA 118
Query: 243 ALHELRHVLGLAH 255
A HEL H LG+ H
Sbjct: 119 ATHELGHSLGMGH 131
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 27/133 (20%)
Query: 147 YVFYPGRPKWPA---TKQIISCAF-LPGTRTD-----------------VQEPDYDAADV 185
Y +P PKW + T +I+S LP D ++ + AD+
Sbjct: 1 YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADI 60
Query: 186 KISFQRXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTV 242
I F R N LAH+F P G H+D DE WT G+ G ++
Sbjct: 61 MIGFARGAHGDSYPFDGPG--NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLYA 117
Query: 243 ALHELRHVLGLAH 255
A HEL H LG+ H
Sbjct: 118 ATHELGHSLGMGH 130
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 27/133 (20%)
Query: 147 YVFYPGRPKWPA---TKQIISCAF-LPGTRTD-----------------VQEPDYDAADV 185
Y +P PKW + T +I+S LP D ++ + AD+
Sbjct: 1 YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADI 60
Query: 186 KISFQRXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTV 242
I F R N LAH+F P G H+D DE WT G+ G ++
Sbjct: 61 MIGFARGAHGDSYPFDGPG--NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLYA 117
Query: 243 ALHELRHVLGLAH 255
A HEL H LG+ H
Sbjct: 118 ATHELGHSLGMGH 130
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 27/133 (20%)
Query: 147 YVFYPGRPKWPA---TKQIISCAF-LPGTRTD-----------------VQEPDYDAADV 185
Y +P PKW + T +I+S LP D ++ + AD+
Sbjct: 2 YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADI 61
Query: 186 KISFQRXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTV 242
I F R N LAH+F P G H+D DE WT G+ G ++
Sbjct: 62 MIGFARGAHGDSYPFDGPG--NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLG-INFLYA 118
Query: 243 ALHELRHVLGLAH 255
A HEL H LG+ H
Sbjct: 119 ATHELGHSLGMGH 131
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HEL H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFIVAAHELGHSLGLDH 129
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE W++G G + VA HE H LGL H
Sbjct: 81 GLLAHAFPPGPGIQGDAHFDDDELWSLGKGQG-YSLFLVAAHEFGHALGLDH 131
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 209 LAHSFPPTDGRF---HYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH++PP G + H+D DE WT A ++ VA HEL H LGL H
Sbjct: 82 LAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAAHELGHSLGLFH 129
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 209 LAHSFPPTDGRF---HYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH++PP G + H+D DE WT A ++ VA HEL H LGL H
Sbjct: 82 LAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAAHELGHSLGLFH 129
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE W++G G + VA H+ H LGL H
Sbjct: 81 GLLAHAFPPGPGIQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDH 131
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE W++G G + VA H+ H LGL H
Sbjct: 77 GLLAHAFPPGPGIQGDAHFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDH 127
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 84 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 132
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPPT---DGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+FPP G H+D DE WT + ++ VA HE H LGL H
Sbjct: 81 LLAHAFPPGPNYGGDAHFDDDETWTSSS--KGYNLFLVAAHEFGHSLGLDH 129
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 123
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 208 LLAHSF---PPTDGRFHYDGDENWTVGAVP-GAVDMQTVALHELRHVLGLAH 255
LAH++ P G H+D DE WT+G D+ VA+HEL H LGL H
Sbjct: 82 FLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEH 133
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+F P G H+D DE W++G G + VA HE H +GL H
Sbjct: 75 GLLAHAFAPGTGVGGDSHFDDDELWSLGKGVG-YSLFLVAAHEFGHAMGLEH 125
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 70 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 118
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 124
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 123
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 69 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 117
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 77 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 125
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 123
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 82 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 130
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 82 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 130
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 123
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 124
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+HE+ H LGL H
Sbjct: 81 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHEIGHSLGLGH 129
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 75 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 124
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 75 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 124
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 74 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 123
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 80 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 129
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA HE+ H LGL H
Sbjct: 74 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIGHSLGLFH 123
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 76 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 124
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 75 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 123
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 81 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 129
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+F P G H+D DE WT+G G + VA H H +GL H
Sbjct: 80 GLLAHAFAPGTGVGGDSHFDDDELWTLGKGVG-YSLFLVAAHAFGHAMGLEH 130
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 80 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 128
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 81 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 129
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D +E WT ++ VA HE H LGLAH
Sbjct: 79 ILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGHSLGLAH 127
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 34/136 (25%)
Query: 147 YVFYPGRPKWPAT------------------KQIISCAFL------PGTRTDVQEPDYDA 182
+V PG P+W T + I AF P T T V E
Sbjct: 1 FVLTPGNPRWENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE---GQ 57
Query: 183 ADVKISFQRXXXXXXXXXXXXXXYNLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDM 239
AD+ ISF R LAH+F P G H+D DE WT ++
Sbjct: 58 ADIMISFVRGDHRDNSPFDGPG--GNLAHAFQPGPGIGGDAHFDEDERWTKNFR--DYNL 113
Query: 240 QTVALHELRHVLGLAH 255
VA HEL H LGL+H
Sbjct: 114 YRVAAHELGHSLGLSH 129
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 207 NLLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
N+LAH++ P +G H+D DE WT ++ VA H++ H LGL H
Sbjct: 77 NVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHQIGHSLGLFH 126
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+H + H LGL H
Sbjct: 81 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHAIGHSLGLGH 129
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+H + H LGL H
Sbjct: 75 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHAIGHSLGLGH 123
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 80 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 127
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 80 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 127
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 81 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 128
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 82 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 129
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 74 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 121
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 81 LAHAFDPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 128
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA HEL H LGL+H
Sbjct: 76 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHELGHSLGLSH 123
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
+LAH+F P G H+D DE WT + G ++ A+H + H LGL H
Sbjct: 76 ILAHAFGPGSGIGGDAHFDEDEFWTTHS--GGTNLFLTAVHAIGHSLGLGH 124
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 208 LLAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LLAH+F P G H+D DE WT + VA HE H +GL H
Sbjct: 82 LLAHAFAPGTGVGGDSHFDDDELWT--NTSANYSLFLVAAHEFGHAMGLEH 130
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 208 LLAHSF---PPTDGRFHYDGDENWTV-GAVPGAVDMQTVALHELRHVLGLAH 255
LAH++ P G H+D E WTV D+ VA+HEL H LGL H
Sbjct: 85 FLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEH 136
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 208 LLAHSF---PPTDGRFHYDGDENWTV-GAVPGAVDMQTVALHELRHVLGLAH 255
LAH++ P G H+D E WTV D+ VA+HEL H LGL H
Sbjct: 87 FLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEH 138
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 209 LAHSFPP---TDGRFHYDGDENWTVGAVPGAVDMQTVALHELRHVLGLAH 255
LAH+F P G H+D DE WT ++ VA H L H LGL+H
Sbjct: 82 LAHAFQPGPGIGGDAHFDEDERWTNNFR--EYNLHRVAAHALGHSLGLSH 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,391,296
Number of Sequences: 62578
Number of extensions: 287943
Number of successful extensions: 630
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 87
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)