Query 043087
Match_columns 754
No_of_seqs 373 out of 2524
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 7E-138 1E-142 1226.0 78.4 728 3-754 26-773 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 1E-112 3E-117 994.1 51.9 709 4-754 7-743 (769)
3 PRK03562 glutathione-regulated 100.0 3.3E-54 7.2E-59 499.5 44.5 493 18-549 4-516 (621)
4 PRK03659 glutathione-regulated 100.0 4.2E-53 9E-58 489.8 44.8 494 19-549 5-516 (601)
5 PRK10669 putative cation:proto 100.0 4.7E-52 1E-56 480.2 45.7 497 20-552 7-536 (558)
6 COG0475 KefB Kef-type K+ trans 100.0 2.4E-45 5.3E-50 403.8 44.3 378 16-416 3-388 (397)
7 PRK05326 potassium/proton anti 100.0 1.2E-39 2.6E-44 376.6 39.8 381 16-417 3-392 (562)
8 COG4651 RosB Kef-type K+ trans 100.0 3.1E-37 6.6E-42 306.8 30.4 371 21-417 8-392 (408)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 2.8E-39 6.2E-44 358.0 -3.6 372 26-413 3-379 (380)
10 TIGR00932 2a37 transporter, mo 100.0 6.1E-34 1.3E-38 300.7 32.4 265 29-313 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9.8E-26 2.1E-30 257.8 41.0 350 21-383 16-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1E-25 2.2E-30 257.3 39.4 329 25-376 4-364 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1E-21 2.2E-26 218.4 41.5 344 19-379 6-369 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 4.3E-22 9.2E-27 208.3 29.1 378 16-415 4-388 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 2.9E-21 6.2E-26 220.5 38.3 357 37-412 28-416 (559)
16 PRK14853 nhaA pH-dependent sod 99.7 3.5E-15 7.5E-20 161.8 34.0 298 85-414 68-397 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 4.9E-14 1.1E-18 143.3 25.8 342 25-379 20-383 (467)
18 KOG1965 Sodium/hydrogen exchan 99.6 2.3E-14 5E-19 157.8 24.9 381 22-415 38-457 (575)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 2E-11 4.3E-16 130.3 25.2 262 85-379 58-344 (373)
20 PRK14856 nhaA pH-dependent sod 99.1 3.5E-08 7.6E-13 107.3 24.6 290 83-409 72-428 (438)
21 PRK09560 nhaA pH-dependent sod 98.9 2E-07 4.3E-12 100.0 24.0 262 84-379 64-353 (389)
22 PRK09561 nhaA pH-dependent sod 98.9 2.2E-07 4.9E-12 99.4 24.3 261 85-379 65-351 (388)
23 PRK14854 nhaA pH-dependent sod 98.9 2.2E-07 4.8E-12 99.1 24.1 263 85-379 62-348 (383)
24 PRK11175 universal stress prot 98.9 1.2E-08 2.7E-13 109.5 14.6 111 516-636 81-199 (305)
25 PRK14855 nhaA pH-dependent sod 98.9 4.1E-07 8.8E-12 98.7 23.6 284 85-408 69-410 (423)
26 KOG1966 Sodium/hydrogen exchan 98.8 2.1E-09 4.5E-14 118.4 4.1 328 32-375 55-408 (670)
27 COG3004 NhaA Na+/H+ antiporter 98.8 1.5E-06 3.2E-11 89.4 23.5 253 91-379 74-354 (390)
28 PF06965 Na_H_antiport_1: Na+/ 98.7 3.1E-07 6.6E-12 98.4 15.4 265 84-379 60-351 (378)
29 cd01988 Na_H_Antiporter_C The 98.6 1.3E-07 2.7E-12 87.9 9.0 129 436-587 1-131 (132)
30 PRK12460 2-keto-3-deoxyglucona 98.2 0.00047 1E-08 72.3 23.5 255 90-417 53-309 (312)
31 PF05684 DUF819: Protein of un 98.0 0.012 2.6E-07 64.8 32.0 294 42-384 24-350 (378)
32 PF03812 KdgT: 2-keto-3-deoxyg 97.8 0.0025 5.5E-08 66.6 20.7 255 90-416 53-314 (314)
33 cd01989 STK_N The N-terminal d 97.6 0.00016 3.4E-09 68.5 7.5 65 516-587 77-143 (146)
34 cd01987 USP_OKCHK USP domain i 97.5 0.00028 6.1E-09 64.8 7.6 120 436-587 1-123 (124)
35 PF03616 Glt_symporter: Sodium 97.3 0.34 7.3E-06 53.4 29.0 93 265-361 247-342 (368)
36 TIGR00793 kdgT 2-keto-3-deoxyg 97.2 0.016 3.4E-07 60.4 16.7 251 90-415 53-313 (314)
37 PF00582 Usp: Universal stress 97.2 0.00048 1E-08 63.5 5.1 52 530-587 88-139 (140)
38 PRK15005 universal stress prot 97.1 0.001 2.3E-08 62.7 6.7 60 518-587 84-143 (144)
39 COG0786 GltS Na+/glutamate sym 97.0 0.1 2.3E-06 56.3 21.2 126 249-376 226-360 (404)
40 PRK15456 universal stress prot 97.0 0.0016 3.5E-08 61.4 7.0 62 516-587 80-141 (142)
41 COG3180 AbrB Putative ammonia 97.0 0.69 1.5E-05 49.8 31.1 301 20-379 7-318 (352)
42 cd00293 USP_Like Usp: Universa 96.8 0.0045 9.7E-08 56.3 8.0 127 436-586 1-129 (130)
43 TIGR00932 2a37 transporter, mo 96.8 0.064 1.4E-06 56.6 17.2 144 252-403 3-147 (273)
44 PRK03562 glutathione-regulated 96.7 0.064 1.4E-06 63.4 18.4 116 247-367 11-127 (621)
45 cd01988 Na_H_Antiporter_C The 96.6 0.019 4.1E-07 52.9 10.7 36 601-636 3-38 (132)
46 PRK09982 universal stress prot 96.6 0.0035 7.7E-08 59.2 5.6 49 530-587 89-137 (142)
47 PRK05274 2-keto-3-deoxyglucona 96.6 0.07 1.5E-06 57.4 16.0 138 270-418 178-318 (326)
48 cd00293 USP_Like Usp: Universa 96.5 0.017 3.7E-07 52.3 9.4 36 601-636 3-38 (130)
49 COG0385 Predicted Na+-dependen 96.5 1.5 3.3E-05 46.7 24.7 102 85-202 41-150 (319)
50 PF00582 Usp: Universal stress 96.4 0.022 4.7E-07 52.3 9.8 37 601-637 6-42 (140)
51 PRK10669 putative cation:proto 96.4 0.15 3.2E-06 59.8 18.6 135 248-390 13-147 (558)
52 PRK03659 glutathione-regulated 96.3 0.17 3.6E-06 59.7 18.6 114 247-365 11-125 (601)
53 TIGR00210 gltS sodium--glutama 96.2 2.7 5.8E-05 46.8 32.8 109 264-376 244-357 (398)
54 PRK15118 universal stress glob 96.2 0.013 2.9E-07 55.2 7.3 49 530-587 89-137 (144)
55 COG0475 KefB Kef-type K+ trans 96.2 0.22 4.7E-06 55.6 17.8 157 246-409 11-169 (397)
56 PRK11175 universal stress prot 96.2 0.0095 2E-07 63.9 6.8 57 530-592 247-303 (305)
57 PF03601 Cons_hypoth698: Conse 96.1 0.2 4.3E-06 53.6 16.3 160 249-414 6-172 (305)
58 PRK09982 universal stress prot 96.0 0.035 7.5E-07 52.4 8.9 36 601-636 7-42 (142)
59 cd01989 STK_N The N-terminal d 96.0 0.076 1.6E-06 50.0 11.0 36 601-636 3-38 (146)
60 PRK05326 potassium/proton anti 95.9 0.19 4.1E-06 58.9 16.4 117 248-368 13-132 (562)
61 COG2855 Predicted membrane pro 95.8 0.13 2.8E-06 54.7 12.9 115 257-375 29-143 (334)
62 TIGR00698 conserved hypothetic 95.7 0.48 1E-05 51.3 16.9 154 250-411 11-175 (335)
63 TIGR00841 bass bile acid trans 95.5 4.2 9.2E-05 43.2 24.1 44 333-376 203-247 (286)
64 PF05145 AmoA: Putative ammoni 95.4 4.8 0.0001 43.5 30.9 158 246-414 157-316 (318)
65 PF03601 Cons_hypoth698: Conse 95.4 4.7 0.0001 43.2 26.4 82 40-130 23-104 (305)
66 PF03956 DUF340: Membrane prot 95.4 0.17 3.6E-06 50.3 11.3 129 47-199 2-135 (191)
67 cd01987 USP_OKCHK USP domain i 95.4 0.065 1.4E-06 48.9 8.0 36 601-636 3-38 (124)
68 PRK10116 universal stress prot 95.3 0.062 1.4E-06 50.3 7.6 51 529-587 87-137 (142)
69 TIGR00832 acr3 arsenical-resis 95.2 5.8 0.00013 43.1 25.5 48 332-379 253-301 (328)
70 PRK10116 universal stress prot 95.1 0.12 2.6E-06 48.4 9.0 36 601-636 7-42 (142)
71 PRK10537 voltage-gated potassi 95.1 0.62 1.4E-05 51.7 15.9 107 434-552 240-357 (393)
72 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 0.66 1.4E-05 55.3 16.4 71 296-369 74-146 (810)
73 PLN03159 cation/H(+) antiporte 94.9 0.73 1.6E-05 56.4 17.1 70 250-320 52-131 (832)
74 PRK12652 putative monovalent c 94.7 0.19 4.1E-06 54.9 10.4 36 601-636 9-46 (357)
75 PF03390 2HCT: 2-hydroxycarbox 94.6 9.2 0.0002 42.4 29.3 251 97-384 109-393 (414)
76 COG0589 UspA Universal stress 94.5 0.16 3.4E-06 47.7 8.2 49 533-587 102-150 (154)
77 PRK15005 universal stress prot 94.5 0.75 1.6E-05 43.0 12.7 36 601-636 6-43 (144)
78 PF01758 SBF: Sodium Bile acid 94.5 2.3 4.9E-05 42.1 16.7 105 87-202 3-111 (187)
79 TIGR00783 ccs citrate carrier 94.4 5 0.00011 43.4 20.0 118 264-384 203-326 (347)
80 TIGR00698 conserved hypothetic 94.3 9.4 0.0002 41.4 30.1 85 38-130 26-110 (335)
81 PRK15118 universal stress glob 94.3 0.23 4.9E-06 46.7 8.7 34 601-634 7-40 (144)
82 TIGR00831 a_cpa1 Na+/H+ antipo 94.3 0.67 1.4E-05 53.8 14.2 119 248-371 5-124 (525)
83 PF06826 Asp-Al_Ex: Predicted 94.3 2.1 4.7E-05 41.6 15.4 114 39-168 19-136 (169)
84 TIGR03082 Gneg_AbrB_dup membra 93.5 1.5 3.2E-05 42.2 12.7 96 27-136 3-100 (156)
85 PRK15456 universal stress prot 93.4 0.78 1.7E-05 42.9 10.7 35 601-636 6-42 (142)
86 TIGR01625 YidE_YbjL_dupl AspT/ 93.2 1.4 3.1E-05 42.1 11.9 115 41-169 19-138 (154)
87 TIGR03082 Gneg_AbrB_dup membra 93.0 4.4 9.5E-05 38.9 15.2 123 250-379 4-128 (156)
88 PF03616 Glt_symporter: Sodium 92.6 1.5 3.2E-05 48.4 12.8 118 296-416 65-187 (368)
89 TIGR03802 Asp_Ala_antiprt aspa 92.6 0.94 2E-05 52.9 11.8 93 266-361 416-513 (562)
90 PRK03818 putative transporter; 92.6 4.4 9.5E-05 47.3 17.2 105 46-167 33-141 (552)
91 TIGR03802 Asp_Ala_antiprt aspa 90.8 8.3 0.00018 45.1 17.0 115 40-168 412-530 (562)
92 PF13593 DUF4137: SBF-like CPA 90.0 31 0.00067 37.2 25.8 42 338-379 239-281 (313)
93 COG0025 NhaP NhaP-type Na+/H+ 90.0 6.8 0.00015 44.2 14.9 121 247-371 12-136 (429)
94 PRK04972 putative transporter; 89.5 4.9 0.00011 46.9 13.7 103 264-368 409-515 (558)
95 TIGR00946 2a69 he Auxin Efflux 88.3 40 0.00088 36.3 30.0 131 266-408 182-316 (321)
96 COG3329 Predicted permease [Ge 88.3 10 0.00022 39.8 13.2 117 265-391 16-136 (372)
97 COG0786 GltS Na+/glutamate sym 87.8 1.1 2.3E-05 48.8 6.1 121 294-416 65-188 (404)
98 PF03547 Mem_trans: Membrane t 87.5 3.9 8.4E-05 45.3 10.9 104 272-379 13-119 (385)
99 COG3493 CitS Na+/citrate sympo 86.4 55 0.0012 35.7 23.8 84 297-384 326-412 (438)
100 PRK04972 putative transporter; 85.4 12 0.00026 43.7 13.7 114 41-168 408-525 (558)
101 PF05145 AmoA: Putative ammoni 84.8 13 0.00028 40.2 12.7 102 21-136 154-257 (318)
102 TIGR00946 2a69 he Auxin Efflux 84.2 34 0.00073 36.9 15.8 134 41-196 180-314 (321)
103 COG0679 Predicted permeases [G 84.0 66 0.0014 34.6 30.8 135 265-408 167-304 (311)
104 PRK12460 2-keto-3-deoxyglucona 83.5 15 0.00033 39.1 12.0 47 87-133 197-243 (312)
105 TIGR00210 gltS sodium--glutama 83.1 41 0.00088 37.5 15.9 163 23-198 223-393 (398)
106 PRK03818 putative transporter; 82.5 35 0.00076 39.9 15.9 106 46-165 403-513 (552)
107 PF03956 DUF340: Membrane prot 81.9 16 0.00035 36.3 11.1 76 298-373 29-104 (191)
108 COG2985 Predicted permease [Ge 81.7 14 0.0003 41.4 11.2 79 85-172 62-147 (544)
109 PF00999 Na_H_Exchanger: Sodiu 81.6 0.26 5.5E-06 54.6 -2.0 111 253-367 8-123 (380)
110 COG4651 RosB Kef-type K+ trans 79.1 13 0.00028 39.1 9.4 131 247-384 12-142 (408)
111 COG0798 ACR3 Arsenite efflux p 76.6 1.2E+02 0.0025 32.9 26.5 106 85-201 54-163 (342)
112 TIGR00840 b_cpa1 sodium/hydrog 76.5 62 0.0013 37.9 15.4 76 294-372 66-150 (559)
113 COG2431 Predicted membrane pro 76.1 36 0.00079 35.4 11.6 77 45-136 108-189 (297)
114 TIGR03136 malonate_biotin Na+- 76.1 14 0.0003 40.0 8.8 115 295-418 102-217 (399)
115 TIGR00808 malonate_madM malona 74.4 34 0.00075 33.9 10.3 109 21-136 15-132 (254)
116 PF03977 OAD_beta: Na+-transpo 73.9 15 0.00033 39.2 8.5 113 296-418 67-180 (360)
117 COG5505 Predicted integral mem 73.2 1.3E+02 0.0029 31.9 27.9 78 297-379 275-352 (384)
118 PRK03359 putative electron tra 72.7 8.8 0.00019 40.0 6.5 29 607-635 35-64 (256)
119 PRK12342 hypothetical protein; 72.5 7.8 0.00017 40.3 6.0 28 607-635 34-61 (254)
120 PRK09903 putative transporter 72.5 1E+02 0.0022 33.1 15.0 114 41-174 171-285 (314)
121 PF05684 DUF819: Protein of un 72.1 64 0.0014 35.8 13.4 97 292-396 52-152 (378)
122 COG3263 NhaP-type Na+/H+ and K 70.6 56 0.0012 36.4 12.0 109 256-367 22-132 (574)
123 TIGR00832 acr3 arsenical-resis 69.3 1.5E+02 0.0034 32.1 15.5 97 307-411 55-156 (328)
124 PRK04125 murein hydrolase regu 69.1 94 0.002 29.2 11.7 29 17-45 6-34 (141)
125 PRK15475 oxaloacetate decarbox 68.3 14 0.0003 39.9 6.8 127 297-431 133-265 (433)
126 PRK15477 oxaloacetate decarbox 68.2 14 0.00031 39.9 6.8 127 297-431 133-265 (433)
127 TIGR01625 YidE_YbjL_dupl AspT/ 68.2 24 0.00052 33.8 7.9 94 266-361 22-120 (154)
128 PRK15476 oxaloacetate decarbox 68.1 14 0.00031 39.9 6.8 127 297-431 133-265 (433)
129 COG1346 LrgB Putative effector 66.3 1.6E+02 0.0034 30.1 17.2 88 315-411 84-171 (230)
130 COG3180 AbrB Putative ammonia 64.6 1.4E+02 0.003 32.6 13.5 104 16-133 181-287 (352)
131 PRK12652 putative monovalent c 63.3 37 0.0008 37.3 9.2 102 435-553 6-122 (357)
132 PF13593 DUF4137: SBF-like CPA 62.6 1.3E+02 0.0028 32.4 13.2 93 268-363 7-99 (313)
133 COG0385 Predicted Na+-dependen 61.8 1.1E+02 0.0025 32.8 12.1 108 297-411 40-150 (319)
134 COG0679 Predicted permeases [G 59.7 2.5E+02 0.0054 30.1 14.8 104 268-375 12-117 (311)
135 PF02601 Exonuc_VII_L: Exonucl 59.5 19 0.0004 38.9 6.1 53 682-735 29-87 (319)
136 TIGR00783 ccs citrate carrier 58.9 1.1E+02 0.0023 33.4 11.5 107 37-156 197-307 (347)
137 PF01012 ETF: Electron transfe 58.7 28 0.0006 33.4 6.6 28 607-634 14-41 (164)
138 PF13194 DUF4010: Domain of un 58.6 2.1E+02 0.0046 28.9 15.7 66 130-199 10-75 (211)
139 PF01758 SBF: Sodium Bile acid 58.5 1.9E+02 0.0041 28.4 13.2 74 305-378 8-83 (187)
140 PRK10490 sensor protein KdpD; 58.3 29 0.00064 43.2 8.3 121 433-587 249-372 (895)
141 COG2855 Predicted membrane pro 58.1 2.8E+02 0.006 30.1 27.8 85 38-136 32-119 (334)
142 KOG1650 Predicted K+/H+-antipo 58.0 1.6E+02 0.0035 36.0 14.1 86 83-176 311-398 (769)
143 TIGR01109 Na_pump_decarbB sodi 57.8 79 0.0017 33.9 9.9 172 247-431 3-194 (354)
144 PRK09903 putative transporter 57.7 2.7E+02 0.0058 29.9 30.6 114 288-412 195-310 (314)
145 COG0589 UspA Universal stress 57.3 62 0.0014 29.6 8.7 31 606-636 15-45 (154)
146 PF03547 Mem_trans: Membrane t 57.0 3E+02 0.0065 30.2 23.7 88 266-354 244-335 (385)
147 PRK01658 holin-like protein; V 56.2 1.6E+02 0.0035 26.9 11.7 99 18-126 4-106 (122)
148 COG2985 Predicted permease [Ge 56.0 87 0.0019 35.4 10.3 110 43-165 395-507 (544)
149 PF03390 2HCT: 2-hydroxycarbox 55.1 2.7E+02 0.0058 31.2 14.0 106 38-156 266-374 (414)
150 PRK01821 hypothetical protein; 55.0 1.8E+02 0.0039 27.1 11.2 27 18-44 9-35 (133)
151 KOG2310 DNA repair exonuclease 53.9 21 0.00046 40.5 5.3 56 533-591 41-99 (646)
152 PRK10711 hypothetical protein; 52.2 1.5E+02 0.0033 30.4 10.7 82 324-411 88-169 (231)
153 PF03812 KdgT: 2-keto-3-deoxyg 50.2 1.1E+02 0.0024 32.6 9.7 65 49-127 177-242 (314)
154 COG2086 FixA Electron transfer 49.2 57 0.0012 34.1 7.3 29 607-635 36-65 (260)
155 TIGR00793 kdgT 2-keto-3-deoxyg 49.2 1.7E+02 0.0037 31.2 10.7 66 49-128 177-243 (314)
156 cd01984 AANH_like Adenine nucl 49.1 20 0.00043 30.1 3.4 49 531-584 35-83 (86)
157 COG1570 XseA Exonuclease VII, 48.0 31 0.00067 38.6 5.4 52 683-735 151-205 (440)
158 KOG1965 Sodium/hydrogen exchan 45.5 36 0.00078 39.2 5.6 72 295-371 100-180 (575)
159 TIGR00841 bass bile acid trans 45.1 3.1E+02 0.0068 29.0 12.5 74 301-376 14-90 (286)
160 PRK04288 antiholin-like protei 44.0 3.8E+02 0.0082 27.6 18.2 82 324-411 93-174 (232)
161 PRK10490 sensor protein KdpD; 42.5 1.4E+02 0.0031 37.1 10.8 36 601-636 254-289 (895)
162 PF02040 ArsB: Arsenical pump 42.2 5.5E+02 0.012 29.0 21.1 36 159-194 117-152 (423)
163 COG1346 LrgB Putative effector 40.2 4.2E+02 0.0092 27.0 15.7 43 90-132 72-114 (230)
164 PF06826 Asp-Al_Ex: Predicted 39.8 3.6E+02 0.0079 26.2 12.5 90 263-355 21-115 (169)
165 COG1380 Putative effector of m 39.6 3.1E+02 0.0068 25.4 10.8 104 17-133 4-114 (128)
166 PRK04125 murein hydrolase regu 39.1 3.4E+02 0.0073 25.6 11.1 37 301-340 69-107 (141)
167 PF05982 DUF897: Domain of unk 33.4 6.5E+02 0.014 27.2 12.5 162 267-434 1-163 (327)
168 TIGR03136 malonate_biotin Na+- 33.3 6.9E+02 0.015 27.5 23.1 71 246-320 233-303 (399)
169 TIGR00237 xseA exodeoxyribonuc 31.9 38 0.00081 38.3 3.1 52 683-735 145-199 (432)
170 PF03977 OAD_beta: Na+-transpo 30.3 7.4E+02 0.016 26.9 26.3 249 23-320 4-266 (360)
171 PRK06806 fructose-bisphosphate 29.9 3.3E+02 0.0071 28.9 9.6 105 513-628 13-131 (281)
172 PRK14853 nhaA pH-dependent sod 29.5 8.1E+02 0.017 27.6 12.8 24 291-314 61-84 (423)
173 cd01984 AANH_like Adenine nucl 28.4 76 0.0016 26.4 3.8 33 601-634 2-34 (86)
174 PRK00286 xseA exodeoxyribonucl 28.1 94 0.002 35.2 5.5 51 683-735 151-204 (438)
175 PRK05274 2-keto-3-deoxyglucona 28.0 5.9E+02 0.013 27.6 11.2 40 91-130 208-247 (326)
176 PF04172 LrgB: LrgB-like famil 27.9 6.5E+02 0.014 25.5 16.4 81 324-410 77-157 (215)
177 TIGR00930 2a30 K-Cl cotranspor 26.7 1.4E+03 0.03 28.9 27.9 104 432-560 573-683 (953)
178 TIGR02039 CysD sulfate adenyly 26.4 1.8E+02 0.0038 31.1 6.8 33 601-633 23-55 (294)
179 PRK14854 nhaA pH-dependent sod 25.5 2.8E+02 0.006 30.7 8.1 25 291-315 55-79 (383)
180 PF02254 TrkA_N: TrkA-N domain 25.4 15 0.00032 32.8 -1.3 50 437-488 1-52 (116)
181 TIGR02230 ATPase_gene1 F0F1-AT 24.9 2E+02 0.0042 25.5 5.6 36 119-154 52-87 (100)
182 KOG2722 Predicted membrane pro 23.9 1.5E+02 0.0032 32.5 5.5 113 284-404 41-159 (408)
183 TIGR00771 DcuC c4-dicarboxylat 23.5 7.7E+02 0.017 27.4 11.5 36 22-57 258-293 (388)
184 PF02673 BacA: Bacitracin resi 22.9 3.8E+02 0.0081 28.1 8.3 41 336-376 162-202 (259)
185 COG3748 Predicted membrane pro 21.0 7E+02 0.015 26.9 9.6 41 296-338 225-265 (407)
186 PRK10263 DNA translocase FtsK; 20.7 5.4E+02 0.012 33.3 10.2 15 265-279 63-77 (1355)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=6.7e-138 Score=1226.02 Aligned_cols=728 Identities=27% Similarity=0.504 Sum_probs=633.8
Q ss_pred ccccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCccccccccc-ccccccccchHHHH
Q 043087 3 ITQELCSSIHPFN-PLVSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYY 80 (754)
Q Consensus 3 ~~~~~~~~~~~l~-~l~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~ 80 (754)
..+|.|.|+||++ ++|.+++|+++++++++++++++||+|||+++|||++|+++||+++|+++. .+.+||.++ .+.+
T Consensus 26 ~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~-~~~l 104 (832)
T PLN03159 26 TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRS-VMVL 104 (832)
T ss_pred cCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcch-HHHH
Confidence 3568999999999 999999999999999999999999999999999999999999999999876 456888765 4456
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHH
Q 043087 81 RVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASP 160 (754)
Q Consensus 81 ~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~ 160 (754)
+.++++|++++||++|+|+|++.+|+++|+++.+|+.++++|+++|+++++++ +............+++++++|+||+|
T Consensus 105 ~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~p 183 (832)
T PLN03159 105 ETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFP 183 (832)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999999999999999999999999998888766 43221122345578999999999999
Q ss_pred HHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hh--HHHH-HHHHHHHHHHHHHHHHHHHHHHc
Q 043087 161 VVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKN--FA--NAIY-SIILTALLIIINMYLAKWFARWN 235 (754)
Q Consensus 161 vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~--~~--~~~l-~~~~~~~~~~v~r~~~~~l~~~~ 235 (754)
+++++|+|+|+++|+.||+++++++++|+++|++++++.++...+. .. +.++ .+++++++++++|+++.|+.+++
T Consensus 184 Vv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~ 263 (832)
T PLN03159 184 VLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRT 263 (832)
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998877654332 11 1222 23345566778899999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 043087 236 KDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIR 315 (754)
Q Consensus 236 ~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~ 315 (754)
+++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|.++.+.+|++.++.++|+|+||+++||++|+.
T Consensus 264 ~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~ 342 (832)
T PLN03159 264 PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVT 342 (832)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHH
Confidence 988888899999999999999999999999999999999999995 6888999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHH
Q 043087 316 DLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLI 395 (754)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~ 395 (754)
.+.+. ..|..+++++++++++|+++++++++++|+|++|++.+|++|++||+++++++++|++ .|++ +++.|+++++
T Consensus 343 ~l~~~-~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~-~gvi-~~~~f~~lVl 419 (832)
T PLN03159 343 KIQGP-ATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRD-QEVL-DDESFAVMVL 419 (832)
T ss_pred HhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHh-cCcc-CchhhhHHHH
Confidence 88654 4566667777888999999999999999999999999999999999999999999999 9999 9999999999
Q ss_pred HHHHHHHhHHHHHHHHhccccccccccccccccCCCCCceeEEEEeecCCCcccchhh-hcccC---CCCcceeeeeecc
Q 043087 396 VVVLNTLITGPIIASILRRNENYFAHRNTSVESLDPESEFRILSCAYEPRHASGQLVL-SASFG---SSISPYLMHLVEL 471 (754)
Q Consensus 396 ~~vls~~i~~pl~~~l~~~~~~~~~~~~~~i~~~~~~~e~rIlic~~~~~~~~~~i~l-~~~~~---~p~~v~~l~lVel 471 (754)
+++++|.+.+|++.++|+|.||+..|++|++|+.+++.|+|||+|+|++++++++++| +++++ +|+++|++|+||+
T Consensus 420 ~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 420 VAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 9988888999999999999999999999999999999999999999999999999999 99877 9999999999999
Q ss_pred ccccchhhhhhhhccCCC-CCCCCcccCCCchhhHhHHHHhhhcc-CceeEEEeEEeeCCCchHHHHHHHHhccCccEEE
Q 043087 472 PKRRRKAKLLYNQLEDGG-QYSDEEDYGGNDVLEINEAVDSFTAQ-TRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIF 549 (754)
Q Consensus 472 ~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~i~~a~~~~~~~-~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIi 549 (754)
++| +.+..++|+..+.. +..++....+|+++ ++|++|+++ +.|++|++|++||+++||||||+.|+|+++++||
T Consensus 500 ~~r-~~~~l~~h~~~~~~~~~~~~~~~~~~~i~---~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIi 575 (832)
T PLN03159 500 TGR-ASAMLIVHNTRKSGRPALNRTQAQSDHII---NAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLII 575 (832)
T ss_pred cCC-CccceeeeecccccccccccccccccHHH---HHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEE
Confidence 999 55556666544322 11112223478777 999999865 5899999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCCCCCCC------CcE-EEEeccCcchHHHHHHHHHHhh
Q 043087 550 LPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQTGFQL------PVA-AMLFFGGADDREALALSKRIGK 622 (754)
Q Consensus 550 lpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~~~~~~------~~~-~~~f~GG~ddreaL~~a~rma~ 622 (754)
+||||+|+.||++++.++.+|.+|+|||++||||||||||||..+.++ ..+ +++|+|||||||||+||+|||+
T Consensus 576 lpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~ 655 (832)
T PLN03159 576 IPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSE 655 (832)
T ss_pred ECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999653221 112 9999999999999999999999
Q ss_pred CCCEEEEEEEeeecccccccCCCCCCCCCCCCCCCCCCcccchhhhcccccchhhHhhHHHHHHHHHhhccCCCceEEEE
Q 043087 623 NSNINLTVIRFLYAAKKEEESSPSSQSSSASSPMVGEPSRKVRVLRSLSRNHEIEIAKDNVFFEEFRLRYVTSGEVGLIE 702 (754)
Q Consensus 623 ~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~f~~~~~~~~~v~y~e 702 (754)
||++++||+||++.+...++. . +.+ +.+ +++.......++++|+++||++++|||.+++++++|.|+|
T Consensus 656 ~p~v~lTVirf~~~~~~~~~~-~-----~~~--~~~----~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E 723 (832)
T PLN03159 656 HPGITLTVMRFIPGEDAAPTA-S-----QPA--SSP----SDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTE 723 (832)
T ss_pred CCCeEEEEEEEEccccccccc-c-----ccc--ccc----cccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 999999999999753322110 0 000 000 1111222333356899999999999999999999999999
Q ss_pred EEecChHHHHHHHHHhhcCCceeEEEEccCCCCCCcccccCccCCCCCCCCC
Q 043087 703 RYVNNGIETLQVLREIMDSIEFSLFIVGKGSYGGSVMTTGLSDWEECPELGP 754 (754)
Q Consensus 703 ~~v~~~~~~~~~~~~~~~~~~~dL~iVGr~~~~~~~~~~gl~~w~e~pELG~ 754 (754)
|+|+||+||+++||+|+++ |||+||||+|+.+|++|+||+||+|||||||
T Consensus 724 ~~V~~~~e~~~~l~~~~~~--ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~ 773 (832)
T PLN03159 724 KVVSNGEETVAAIRSMDSA--HDLFIVGRGQGMISPLTAGLTDWSECPELGA 773 (832)
T ss_pred EecCCHHHHHHHHHHhhcc--CcEEEEecCCCCCcchhccccccccCCccch
Confidence 9999999999999999998 9999999999888999999999999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-112 Score=994.05 Aligned_cols=709 Identities=30% Similarity=0.494 Sum_probs=628.8
Q ss_pred cccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCccccccccc-ccccccccchHHHHH
Q 043087 4 TQELCSSIHPFN-PLVSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYYR 81 (754)
Q Consensus 4 ~~~~~~~~~~l~-~l~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~~ 81 (754)
-.|.++|+||++ ++|++++|+.+++++++++++++||+|||++++++++||++||+.+|.++. .+.+||.+ .....+
T Consensus 7 ~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~-s~~~l~ 85 (769)
T KOG1650|consen 7 SNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKS-SMIVLE 85 (769)
T ss_pred cCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccc-hHHHHH
Confidence 356677999999 999999999999999999999999999999999999999999999999987 56788844 466778
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc----hHHHHHHHHHHhcc
Q 043087 82 VFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNT----PAFSITITILLANS 157 (754)
Q Consensus 82 ~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~----~~~~l~i~~~ls~T 157 (754)
.++.+|+.+++|+.|+|+|.+.+++.+|++..+|+.++++|++.|.++...+.+......+. .....++..++|.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999888777654332222111 22568888999999
Q ss_pred cHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 158 ASPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKN------FANAIYSIILTALLIIINMYLAKWF 231 (754)
Q Consensus 158 s~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~------~~~~~l~~~~~~~~~~v~r~~~~~l 231 (754)
|||+++++|.|+|++++++||+++++++++|+++|.++++..++..... .+.....+.+.++..++.||.+.|+
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI 245 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHH
Confidence 9999999999999999999999999999999999998888887765432 2222333445666677899999999
Q ss_pred HHHccCCCccchhHHHHHHHHHHHHHHHHHHhC-chHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043087 232 ARWNKDSKYVSNAQVLFLLVLVVSLAFSIEVLG-YNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGF 310 (754)
Q Consensus 232 ~~~~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G-~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~ 310 (754)
.||+|++++.++.++...+..++.++.+++.++ .|+++|||+.|+++|+++|+++.+.||++++..++|+|+||+..|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhH
Q 043087 311 QFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIH 390 (754)
Q Consensus 311 ~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~ 390 (754)
++|+..+.. |......+...+++|++++..++.++|+|++|++.+|++|++||.+++++++.+.+ .+++ +++.|
T Consensus 326 k~di~~i~~----~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~-~~~~-~~~~f 399 (769)
T KOG1650|consen 326 KTDISRINK----WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLD-RKIL-SDEGF 399 (769)
T ss_pred ceeHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhh-cCCc-ccchH
Confidence 999998876 77777888899999999999999999999999999999999999999999999999 9999 99999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccccccccccccccccCCCCCceeEEEEeecCCCcccchhh-hcccC---CCCcceee
Q 043087 391 RMLLIVVVLNTLITGPIIASILRRNENYFAHRNTSVESLDPESEFRILSCAYEPRHASGQLVL-SASFG---SSISPYLM 466 (754)
Q Consensus 391 ~~lv~~~vls~~i~~pl~~~l~~~~~~~~~~~~~~i~~~~~~~e~rIlic~~~~~~~~~~i~l-~~~~~---~p~~v~~l 466 (754)
++++++++++|.++||++..+|+|.+++..|++|++++.+++.++|++.|.|+++|+++++++ |++++ +|++++++
T Consensus 400 ~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~l 479 (769)
T KOG1650|consen 400 TVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYAL 479 (769)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeee
Confidence 999999999999999999999999999999999999999999999999999999999999999 99887 39999999
Q ss_pred eeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhhcc--CceeEEEeEEeeCCCchHHHHHHHHhccC
Q 043087 467 HLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFTAQ--TRIRISQVKIVNTFANMYEDVCNAAEDFR 544 (754)
Q Consensus 467 ~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~~~--~~V~v~~~~~vs~~~~m~edI~~~A~e~~ 544 (754)
|+||+.+|+.+ ..++|+.++... .+.+.+.++++. .+|+.|+.. ..|.++++|+++|+++||||||++|.+++
T Consensus 480 hlveL~~~~~~-~li~h~~~~~~~-~~~~s~~~~~i~---~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~ 554 (769)
T KOG1650|consen 480 HLVELVGRATP-LLISHKLRKNGR-VESRSSSSDQIN---VAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKG 554 (769)
T ss_pred eeeecccccch-hhhhhhhccccc-cccccccchhhH---HHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhC
Confidence 99999999555 566665544321 123334566666 999999873 67999999999999999999999999999
Q ss_pred ccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCCCC--CCCC-----cEEEEeccCcchHHHHHHH
Q 043087 545 VTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQTG--FQLP-----VAAMLFFGGADDREALALS 617 (754)
Q Consensus 545 a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~~~--~~~~-----~~~~~f~GG~ddreaL~~a 617 (754)
+++|++||||+|+.++.+++.++.+|.+|++|+++||||||||||||..+ .... +-+++|+||+||||||+|+
T Consensus 555 ~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~ 634 (769)
T KOG1650|consen 555 VSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALA 634 (769)
T ss_pred CcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHH
Confidence 99999999999996678999999999999999999999999999997211 1111 1199999999999999999
Q ss_pred HHHhhCCCEEEEEEEeeecccccccCCCCCCCCCCCCCCCCCCcccchhhhcccccchhhHhhHHHHHHHH-HhhccCCC
Q 043087 618 KRIGKNSNINLTVIRFLYAAKKEEESSPSSQSSSASSPMVGEPSRKVRVLRSLSRNHEIEIAKDNVFFEEF-RLRYVTSG 696 (754)
Q Consensus 618 ~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~f-~~~~~~~~ 696 (754)
+||++||++++||+||+++++..+.. . .+++++++|++..++| +..+..+.
T Consensus 635 ~rm~~~~~v~lTVirf~~~~~~~~~~-----------------~-----------~~~~~~~l~~~~~~~~~~~~~~~~~ 686 (769)
T KOG1650|consen 635 KRMAENPRVTLTVIRFFPDESKYNRK-----------------V-----------LVEVGKMLDQEGLEDFVKSTRESNL 686 (769)
T ss_pred HHHhhCCceEEEEEEeeccchhhccc-----------------c-----------cchhhhhhhhhHHHHHHHHhhhchh
Confidence 99999999999999999764433110 0 0358999999999999 76666777
Q ss_pred ceEEE-EEEecChHHHHHHHHHhhcCCceeEEEEccCCCCCCcccccCccCCCCCCCCC
Q 043087 697 EVGLI-ERYVNNGIETLQVLREIMDSIEFSLFIVGKGSYGGSVMTTGLSDWEECPELGP 754 (754)
Q Consensus 697 ~v~y~-e~~v~~~~~~~~~~~~~~~~~~~dL~iVGr~~~~~~~~~~gl~~w~e~pELG~ 754 (754)
++.|. ||.|+|+.||.+++|++.++ |||++|||+|+.+++.|+|++||+||||||+
T Consensus 687 ~i~~~~ek~v~~~~et~~~~~~~~~~--ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~ 743 (769)
T KOG1650|consen 687 DIIYAEEKIVLNGAETTALLRSITED--YDLFIVGRSHGMLSEATGGLSEWSECPELGV 743 (769)
T ss_pred hhhhhhHHHHhcchhHHHHHHHhccc--cceEEEecccccccchhcCchhcccCccccc
Confidence 89999 69999999999999999998 9999999999999999999999999999996
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3.3e-54 Score=499.51 Aligned_cols=493 Identities=18% Similarity=0.212 Sum_probs=369.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhh
Q 043087 18 VSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGL 97 (754)
Q Consensus 18 ~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gl 97 (754)
..++.++.+++.++.++..++||+|+|+++|||++|+++||+++|++++ .+....++++|++++||.+|+
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~----------~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD----------VESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC----------HHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999998764 223456999999999999999
Q ss_pred ccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchH
Q 043087 98 EMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELG 177 (754)
Q Consensus 98 e~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g 177 (754)
|+|++++|+.+|+++.+|..++.+|+++++.++++ +++ ++..++.+|.+++.||++++.++|+|+|+++|+.|
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~-~g~------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G 146 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML-LGL------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMG 146 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 99999999999999999999999999888776654 344 44567788888887888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc--h---hHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH
Q 043087 178 RLASTTSLINEVGCIIYYSSFVTVLSS-KN--F---ANAIYS-IILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLL 250 (754)
Q Consensus 178 ~l~ls~a~~~Di~~i~ll~~~~~~~~~-~~--~---~~~~l~-~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl 250 (754)
|.+++++++||+++|++++++..+... .. . +..... +++++++++++|++++++.++..+.+ .+|.++..++
T Consensus 147 ~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~~e~~~~~~l 225 (621)
T PRK03562 147 RSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-LREVFTAVAL 225 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 999999999999999999988766532 11 1 111111 12233334445666666555543322 4688888889
Q ss_pred HHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHH
Q 043087 251 VLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLL 330 (754)
Q Consensus 251 ~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~ 330 (754)
+++++++++++.+|+|+++|||++|+++++ +++.+++.+++ .+++++|+|+||+++||++|+..+..+ |+.++.+
T Consensus 226 ~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i-~pf~~lll~lFFi~vG~~id~~~l~~~---~~~il~~ 300 (621)
T PRK03562 226 FLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDI-EPFKGLLLGLFFIAVGMSIDFGTLLEN---PLRILIL 300 (621)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHH-HHHHHHHHHHHHHHhhhhccHHHHHHH---HHHHHHH
Confidence 999999999999999999999999999995 56655555555 567899999999999999999887664 5555666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 043087 331 LFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIAS 410 (754)
Q Consensus 331 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~ 410 (754)
+++.+++|++++++.++++|+++++++.+|++|+|+|+|+++++..+.+ .|++ +++.|+.+++++++|++++|++..
T Consensus 301 ~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~-~~~i-~~~~~~~lv~~v~lS~~~tP~l~~- 377 (621)
T PRK03562 301 LLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQM-ANVL-EPEWAKLLTLAVALSMAATPLLLV- 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHH-CCCC-CHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6778999999999999999999999999999999999999999999999 9999 999999999999888877665544
Q ss_pred Hhccc-cccccccccccccCCCCCceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccchhhhhhhhccC
Q 043087 411 ILRRN-ENYFAHRNTSVESLDPESEFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRRKAKLLYNQLED 487 (754)
Q Consensus 411 l~~~~-~~~~~~~~~~i~~~~~~~e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~~~~~~~~~~~~ 487 (754)
+|++. .+....++ . ++..++.+.|+++||||+.|+.-.-.|+ .++.|+.+.+.+ .+|..++ .+.+++|||.++
T Consensus 378 ~~~~~~~~~~~~~~-~-~~~~~~~~~~vII~G~Gr~G~~va~~L~-~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~ 453 (621)
T PRK03562 378 LLDRLEQSRTEEAR-E-ADEIDEQQPRVIIAGFGRFGQIVGRLLL-SSGVKMTVLDHDPDHIETLRK-FGMKVFYGDATR 453 (621)
T ss_pred hhhHHHHHHhhhcc-c-ccccccccCcEEEEecChHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHh-cCCeEEEEeCCC
Confidence 44443 21111111 1 1111233579999999999973222221 133666666554 6666665 788899999877
Q ss_pred CCC---CC-CCc------ccCCCchhhHhHHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEE
Q 043087 488 GGQ---YS-DEE------DYGGNDVLEINEAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIF 549 (754)
Q Consensus 488 ~~~---~~-~~~------~~~~~~il~i~~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIi 549 (754)
.+. +. ++. ..+.+....+....|+..++.++.+|+.+..+ ....++.++|.++
T Consensus 454 ~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~---------~~~L~~~Gad~v~ 516 (621)
T PRK03562 454 MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDH---------YIRLRQAGVEKPE 516 (621)
T ss_pred HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHH---------HHHHHHCCCCEEe
Confidence 521 00 000 00112223333666776777777666653321 2334455677654
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=4.2e-53 Score=489.76 Aligned_cols=494 Identities=18% Similarity=0.207 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhc
Q 043087 19 STFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLE 98 (754)
Q Consensus 19 ~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle 98 (754)
.++.++.++++++.++..++||+|+|+++||+++|+++||+++|++++ .+....++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 367789999999999999999999999999999999999999998864 1223569999999999999999
Q ss_pred cChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHH
Q 043087 99 MDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGR 178 (754)
Q Consensus 99 ~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~ 178 (754)
+|++++|+.+|+++.+|..++++|+++++.++++ +++ ++..++.+|++++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~-~g~------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLML-TDF------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 9999999999999999999999998877665543 344 455677788888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc---hhHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHH
Q 043087 179 LASTTSLINEVGCIIYYSSFVTVLSSKN---FANAIY-SIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLLVLVV 254 (754)
Q Consensus 179 l~ls~a~~~Di~~i~ll~~~~~~~~~~~---~~~~~l-~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl~~~l 254 (754)
++++++++||+.++++++++..+...+. .+.... .++.++++++++|++.+++.++..+. +.+|.++..++++++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~l~~vl 226 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-GVREVFTAAALLLVL 226 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 9999999999999999988876653321 111111 12222333445566666666554332 246888888999999
Q ss_pred HHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHH
Q 043087 255 SLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSC 334 (754)
Q Consensus 255 ~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~ 334 (754)
+++++++.+|+|+++|||++|+++++ +++.++..+++ .+++++|+|+||+++||++|+..+.+. |+.++.++++.
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i-~pf~~lll~lFFi~vGm~id~~~l~~~---~~~il~~~~~~ 301 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAI-EPFKGLLLGLFFISVGMALNLGVLYTH---LLWVLISVVVL 301 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHH-HHHHHHHHHHHHHHHhhhccHHHHHHh---HHHHHHHHHHH
Confidence 99999999999999999999999995 56555555555 567899999999999999999988764 66666677788
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcc
Q 043087 335 IASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRR 414 (754)
Q Consensus 335 ~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~ 414 (754)
+++|++++++.++++|+++++++.+|+.|+|+|+|+++++..+.+ .|++ +++.|+.+++++++|+++ +|++..+++|
T Consensus 302 l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~-~g~i-~~~~~~~lv~~v~ls~~~-tP~l~~~~~~ 378 (601)
T PRK03659 302 VAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASS-QRLL-QGDQMALLLVVVTLSMMT-TPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHh-CCCC-CHHHHHHHHHHHHHHHHH-HHHHHHHhHH
Confidence 899999999999999999999999999999999999999999999 9999 999999999999999866 5555555544
Q ss_pred --ccccccccccccccCCCCCceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccchhhhhhhhccCCCC
Q 043087 415 --NENYFAHRNTSVESLDPESEFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRRKAKLLYNQLEDGGQ 490 (754)
Q Consensus 415 --~~~~~~~~~~~i~~~~~~~e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~~~~~~~~~~~~~~~ 490 (754)
.+++.........+...+.+.||++||||+.|+.-.-.|+ .++.|+.+.+.+ .+|..++ .+.+++|||+++.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr~G~~va~~L~-~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~ 456 (601)
T PRK03659 379 WLARRLNGPEEEDEKPWVEDDKPQVIIVGFGRFGQVIGRLLM-ANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLEL 456 (601)
T ss_pred HHHHhhccccccccccccccccCCEEEecCchHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHH
Confidence 2222111110001111234679999999999973222222 234677766555 6666555 778899999877421
Q ss_pred ---CC-CCcc------cCCCchhhHhHHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEE
Q 043087 491 ---YS-DEED------YGGNDVLEINEAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIF 549 (754)
Q Consensus 491 ---~~-~~~~------~~~~~il~i~~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIi 549 (754)
+. ++.+ .+.+....+....|++.++.++.+|+++..+ .+..++.++|-++
T Consensus 457 L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~---------~~~L~~~Ga~~vv 516 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVE---------AHELLQAGVTQFS 516 (601)
T ss_pred HHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHH---------HHHHHhCCCCEEE
Confidence 00 0000 0111122233667777777777777663322 3444555666655
No 5
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=4.7e-52 Score=480.18 Aligned_cols=497 Identities=16% Similarity=0.195 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhcc
Q 043087 20 TFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEM 99 (754)
Q Consensus 20 ~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~ 99 (754)
++..+.++++++.+++.++||+|+|+++|||++|+++||+++|.+++ .+..+.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~----------~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD----------TKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc----------hHHHHHHHHHHHHHHHHHhHhcC
Confidence 45677888889999999999999999999999999999999998653 23456799999999999999999
Q ss_pred ChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHH
Q 043087 100 DTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRL 179 (754)
Q Consensus 100 d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l 179 (754)
|++.+|+.++..+..++.++++|+++++++++++ ++ ++..++.+|+++|+||++++.++|+|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVL-GW------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 9999999888777778888889988887766533 33 5667888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---C--chh---HHH-----HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHH
Q 043087 180 ASTTSLINEVGCIIYYSSFVTVLSS---K--NFA---NAI-----YSIILTALLIIINMYLAKWFARWNKDSKYVSNAQV 246 (754)
Q Consensus 180 ~ls~a~~~Di~~i~ll~~~~~~~~~---~--~~~---~~~-----l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~ 246 (754)
++++++++|+++|+++.++..+... + +.. ... ..++++++.+++.|++.+|+.++.++.+ .+|.++
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 9999999999999998887655421 1 111 111 1122344556788999999999887654 578888
Q ss_pred HHHHHHHHHHHHH-HHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHH
Q 043087 247 LFLLVLVVSLAFS-IEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNIL 325 (754)
Q Consensus 247 ~~vl~~~l~~~~~-a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~ 325 (754)
+.++++++++++. ++.+|+|+++|||++|+++|+ ++..++..++ ..++.++|+|+||+++|+++|+..+.+. +.
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~-~~~~~~~f~plFFv~~G~~~d~~~l~~~---~~ 303 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHD-TLPLRDAFAVLFFVSVGMLFDPMILIQQ---PL 303 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHH-HhhHHHHHHHHHHHHhhhhcCHHHHHHH---HH
Confidence 8888888888875 699999999999999999995 5655554444 4567899999999999999999987664 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHH
Q 043087 326 LVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITG 405 (754)
Q Consensus 326 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~ 405 (754)
.++.++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++ .|++ +++.|+.+++++++|++++|
T Consensus 304 ~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~-~gii-~~~~~~~~v~~~~~t~~~~P 381 (558)
T PRK10669 304 AVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMA-LNLL-PQAGQNLVLAGAILSIMLNP 381 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHh-CCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999999999999999999999999999999999999999999 9999 99999999999999999999
Q ss_pred HHHHHHhccccccccccc----ccccc---CCCCCceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccc
Q 043087 406 PIIASILRRNENYFAHRN----TSVES---LDPESEFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRR 476 (754)
Q Consensus 406 pl~~~l~~~~~~~~~~~~----~~i~~---~~~~~e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~ 476 (754)
++.++..+..++..+.+. +..++ .+++.+.|+++||+|+.|+.-.-.|+ .++.|+.+.+-+ .++..++ .
T Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~-~~g~~vvvId~d~~~~~~~~~-~ 459 (558)
T PRK10669 382 VLFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLL-AAGIPLVVIETSRTRVDELRE-R 459 (558)
T ss_pred HHHHHhhHHHHHhhhccccccccccccccccccccCCCEEEECCChHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHH-C
Confidence 888876554333221111 11111 12244689999999999973222221 123566655544 4444443 5
Q ss_pred hhhhhhhhccCCCC---CC-CCcc------cCCCchhhHhHHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCcc
Q 043087 477 KAKLLYNQLEDGGQ---YS-DEED------YGGNDVLEINEAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVT 546 (754)
Q Consensus 477 ~~~~~~~~~~~~~~---~~-~~~~------~~~~~il~i~~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~ 546 (754)
+...+++|+.+++. +. ++.+ .+.+....+....++..++.++.+|.. +..|++.+ ++.++|
T Consensus 460 g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~------~~~~~~~l---~~~Gad 530 (558)
T PRK10669 460 GIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH------YDDEVAYI---TERGAN 530 (558)
T ss_pred CCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC------CHHHHHHH---HHcCCC
Confidence 66788888876421 11 0000 011111112245555555555555432 22234433 567899
Q ss_pred EEEecC
Q 043087 547 IIFLPF 552 (754)
Q Consensus 547 LIilpf 552 (754)
-++.|-
T Consensus 531 ~vv~p~ 536 (558)
T PRK10669 531 QVVMGE 536 (558)
T ss_pred EEEChH
Confidence 999875
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=403.80 Aligned_cols=378 Identities=24% Similarity=0.394 Sum_probs=314.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 043087 16 PLVSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLI 95 (754)
Q Consensus 16 ~l~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~ 95 (754)
+....+.|+.++++++.+.++++||+|+|+++||+++|+++||.+++.+.+ ..+..+.++++|++++||.+
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~---------~~~~i~~laelGvi~LlF~~ 73 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIE---------SSEIIELLAELGVVFLLFLI 73 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCC---------chHHHHHHHHHhHHHHHHHH
Confidence 345678999999999999999999999999999999999999965554442 24566779999999999999
Q ss_pred hhccChhHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCC
Q 043087 96 GLEMDTAYLRTNMDL-AATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTS 174 (754)
Q Consensus 96 Gle~d~~~l~~~~k~-~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s 174 (754)
|+|+|++++|+++|+ ....+..++..|++++....+..+++ ++..++++|.+++.||+++++++|+|+|.+++
T Consensus 74 GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~ 147 (397)
T COG0475 74 GLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL------SLIAALFLGAALALSSTAIVLKILMELGLLKT 147 (397)
T ss_pred HHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999 77777777777777765443322343 45568999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch----hH-HHHHH-HHHHHHHHHHHHHHHHHHHHccCCCccchhHHHH
Q 043087 175 ELGRLASTTSLINEVGCIIYYSSFVTVLSSKNF----AN-AIYSI-ILTALLIIINMYLAKWFARWNKDSKYVSNAQVLF 248 (754)
Q Consensus 175 ~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~----~~-~~l~~-~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~ 248 (754)
+.|+++++++++||++++++++++..+..+++. +. ....+ .+.++....++++.+|+.|+..+.+ .+|..+..
T Consensus 148 ~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~-~~e~~~~~ 226 (397)
T COG0475 148 REGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTE-SSELFILF 226 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 999999999999999999999999988765431 11 11122 2333444456888888888876543 46888899
Q ss_pred HHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 249 LLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTT-RTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 249 vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~-~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
++.+++++++++|.+|+|+++|||++|+++++ .+.. ++..++++.+-.++|+|+||+++||++|++.+.++ +..+
T Consensus 227 ~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~---~~~~ 302 (397)
T COG0475 227 VLLLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN---LLLI 302 (397)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc---HHHH
Confidence 99999999999999999999999999999995 4455 57777776555559999999999999999999886 5667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHH
Q 043087 328 LLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPI 407 (754)
Q Consensus 328 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl 407 (754)
+.++.+..++|.+++++.++..|.+.+++...|+.+.++|+++++.++.+.+ +.+ +++.++..+.++++++.+.+.+
T Consensus 303 l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~--~~i-~~~~~~~~v~~smi~t~i~~~~ 379 (397)
T COG0475 303 LLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG--SAI-SEALLTAVVILSMITTPILPLL 379 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc--chh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999988776 466 8888888888888888777777
Q ss_pred HHHHhcccc
Q 043087 408 IASILRRNE 416 (754)
Q Consensus 408 ~~~l~~~~~ 416 (754)
.+.++++..
T Consensus 380 ~~~~~~~~~ 388 (397)
T COG0475 380 TPILLKRLL 388 (397)
T ss_pred HHHHHHHhh
Confidence 777776544
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.2e-39 Score=376.57 Aligned_cols=381 Identities=13% Similarity=0.161 Sum_probs=318.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 043087 16 PLVSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLI 95 (754)
Q Consensus 16 ~l~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~ 95 (754)
++..++++++++++++.+++.+++|+|+|.+++|+++|+++||+++|.+.. ++ .+..+.++.++++++||..
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~-------~~-~~~~~~i~~l~L~~iLF~~ 74 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF-------DN-YPLAYLVGNLALAVILFDG 74 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc-------Cc-HHHHHHHHHHHHHHHHHcC
Confidence 455688999999999999999999999999999999999999999997642 11 3455679999999999999
Q ss_pred hhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCc-cCC
Q 043087 96 GLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKF-NTS 174 (754)
Q Consensus 96 Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~-l~s 174 (754)
|+|+|++.+|+.+|+++.++..++++|++++...+++++++ ++..++.+|+++++|+++++.++++|+|+ +++
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~ 148 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKE 148 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcch
Confidence 99999999999999999999999999988866555556555 66778999999999999999999999996 899
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhH-H----HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHH
Q 043087 175 ELGRLASTTSLINEVGCIIYYSSFVTVLSSKN--FAN-A----IYSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVL 247 (754)
Q Consensus 175 ~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~--~~~-~----~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~ 247 (754)
+.++++.+++.+||..+++++.++..+..++. ..+ . ...+++.++++++.++++.|+.++.... .++.+..
T Consensus 149 ~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i 226 (562)
T PRK05326 149 RVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPI 226 (562)
T ss_pred hHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHH
Confidence 99999999999999999988887776654322 111 1 1123344556677888888998887432 2456777
Q ss_pred HHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 248 FLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 248 ~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
+++.++++++++++.+|.|+++|+|++|+++++.++..++..+++.+.+.+++.|+||+++|+.+|+..+.+. .+..+
T Consensus 227 ~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~--~~~~l 304 (562)
T PRK05326 227 LVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI--ALPAL 304 (562)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHH
Confidence 8888999999999999999999999999999976655667788888889999999999999999999887653 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccc-hhhHHHHHHHHHHHHHhHHH
Q 043087 328 LLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWS-PMIHRMLLIVVVLNTLITGP 406 (754)
Q Consensus 328 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~-~~~~~~lv~~~vls~~i~~p 406 (754)
++.+++.+++|++++++..+.+++++||+..+||. ++||+++++++..+.. .|+. + ++.|++..+++++|+++.++
T Consensus 305 ~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~-~~~~-~~~~~~~~~~~vvl~S~~i~g~ 381 (562)
T PRK05326 305 LLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMM-AGLP-NAQLIFNVVFFVVLVSLLLQGT 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHH-cCCC-chhhhhhhhheeeHHHHHHHHh
Confidence 33345677899999999999999999999999994 8999999999999999 8987 5 56778888999999999998
Q ss_pred HHHHHhccccc
Q 043087 407 IIASILRRNEN 417 (754)
Q Consensus 407 l~~~l~~~~~~ 417 (754)
.+..+.++.+-
T Consensus 382 tl~~~a~~l~l 392 (562)
T PRK05326 382 TLPWAARKLGV 392 (562)
T ss_pred hHHHHHHHcCC
Confidence 88887766543
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-37 Score=306.80 Aligned_cols=371 Identities=17% Similarity=0.273 Sum_probs=298.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccC
Q 043087 21 FVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMD 100 (754)
Q Consensus 21 l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d 100 (754)
+..+..-+.++.+++.+..|+|+|+.+||+++|+++||..-|.+.+ +.+...++++|++++||-+|++++
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad----------~~La~~LAelGViLLmFgvGLhfs 77 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD----------QTLAPELAELGVILLMFGVGLHFS 77 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc----------hhHHHHHHHhhHHHHHHhcchhee
Confidence 3344555667889999999999999999999999999987777664 455556999999999999999999
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHH
Q 043087 101 TAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLA 180 (754)
Q Consensus 101 ~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ 180 (754)
++.+...+..++.-++.++.+-...|.++++.+ + |+....+.+|.++|..|+.+..|-|+|+++++++.||++
T Consensus 78 lkdLLavk~iAipgAl~qia~at~lg~gL~~~l-g------ws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 78 LKDLLAVKAIAIPGALAQIALATLLGMGLSSLL-G------WSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHc-C------CCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 999988666665667777776666777766633 4 455557888999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---Cch---------hHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHH
Q 043087 181 STTSLINEVGCIIYYSSFVTVLSS---KNF---------ANAI-YSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVL 247 (754)
Q Consensus 181 ls~a~~~Di~~i~ll~~~~~~~~~---~~~---------~~~~-l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~ 247 (754)
++..+++|++.++.+.+.+++.+- .+. ..+. ....+..+..+++|++.+|+..+..... .+|.+.+
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L 229 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTL 229 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHH
Confidence 999999999999988888877532 111 1111 1233566778899999999999876553 4789999
Q ss_pred HHHHHHHHHHHH-HHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHH
Q 043087 248 FLLVLVVSLAFS-IEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILL 326 (754)
Q Consensus 248 ~vl~~~l~~~~~-a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~ 326 (754)
.++.++++.++. ++.+|+|+.+|||++|++++ ++... +...+-..+.++.|.-+||+++||..|...+.++ ...
T Consensus 230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-esels-hraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~---pl~ 304 (408)
T COG4651 230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELS-HRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQ---PLA 304 (408)
T ss_pred HHHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhh-HHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcc---hHH
Confidence 999999998884 57899999999999999999 44444 3344444689999999999999999999887764 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHH
Q 043087 327 VLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGP 406 (754)
Q Consensus 327 ~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~p 406 (754)
++..+++...+|-+..+...+.+|.|.|.++.++..+.|.|||+++++..+.+ .+++ ++..-..++...++ .++..|
T Consensus 305 vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~-l~ll-p~~gr~Lvlagail-sIl~nP 381 (408)
T COG4651 305 VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIK-LNLL-PEAGRDLVLAGAIL-SILLNP 381 (408)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhh-hccC-cHHHHHHHHHHHHH-HHHHhH
Confidence 66666778889999999999999999999999999999999999999999999 9999 75555555555555 455666
Q ss_pred HHHHHhccccc
Q 043087 407 IIASILRRNEN 417 (754)
Q Consensus 407 l~~~l~~~~~~ 417 (754)
+.....++.++
T Consensus 382 llf~~~dr~~~ 392 (408)
T COG4651 382 LLFALLDRYQR 392 (408)
T ss_pred HHHHHHHHHhh
Confidence 66655555443
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=2.8e-39 Score=358.03 Aligned_cols=372 Identities=26% Similarity=0.454 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 043087 26 LMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLR 105 (754)
Q Consensus 26 lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~ 105 (754)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++ + ....+.++++|+.++||.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455667777899999999999999999999998886554 1 12335588999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHH
Q 043087 106 TNMDLAATIASGGLLVSFVF-GIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTS 184 (754)
Q Consensus 106 ~~~k~~~~i~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a 184 (754)
+++|+.+.+++.++.+|+++ ++.+.++++.. ++++..++.+|.+++.||++++.++++|++..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFIL----GLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccc----hhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999988 66555332111 34667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CccchhHHHHHHHHHHHHHHHH
Q 043087 185 LINEVGCIIYYSSFVTVLSSK---NFANAIYSIILTALLIIINMYLAKWFARWNKDS-KYVSNAQVLFLLVLVVSLAFSI 260 (754)
Q Consensus 185 ~~~Di~~i~ll~~~~~~~~~~---~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~-~~~~~~~~~~vl~~~l~~~~~a 260 (754)
++||+.+++++.+.....+.+ +..+....++..+....+.++...|+.++..+. ++.++.+...+++.++..++++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a 229 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA 229 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc
Confidence 999999999988877765221 122222222222233333333333333333222 1346788889999999999999
Q ss_pred HHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043087 261 EVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMI 340 (754)
Q Consensus 261 ~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~ 340 (754)
|.+|.|+++|+|++|++++ +.+..++..++++.+..+++.|+||+.+|+++|++.+......|...+.+++..+++|++
T Consensus 230 ~~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 308 (380)
T PF00999_consen 230 EILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI 308 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence 9999999999999999999 456666788888777779999999999999999988841114466677777777799999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhc
Q 043087 341 GTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILR 413 (754)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~ 413 (754)
++++.+++.|.++||+..+|+.+++||+++++++..+.+ .|++ +++.+++++.++++|+++.|+.++.+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~-~~~~-~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALN-LGII-SEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp --------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------------
T ss_pred eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHh-cCCC-CHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 9999 9999999999999999998888876644
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=6.1e-34 Score=300.71 Aligned_cols=265 Identities=23% Similarity=0.325 Sum_probs=223.0
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhch
Q 043087 29 VIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNM 108 (754)
Q Consensus 29 ~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~ 108 (754)
+++.+.+.++||+|+|++++|+++|+++||+++|.+++ .+..+.++.+|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45778899999999999999999999999999998764 23456799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHH
Q 043087 109 DLAATIASGGLLVS-FVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLIN 187 (754)
Q Consensus 109 k~~~~i~~~~~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~ 187 (754)
|++..++..++++| +++++.++++ +++ ++..++.+|+++++||++++.++++|+|..+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHL-LGL------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCC------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 6666655543 343 566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCc--h-h--HHHH-HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHH
Q 043087 188 EVGCIIYYSSFVTVLSSKN--F-A--NAIY-SIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLLVLVVSLAFSIE 261 (754)
Q Consensus 188 Di~~i~ll~~~~~~~~~~~--~-~--~~~l-~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl~~~l~~~~~a~ 261 (754)
|+.+++++.+...+.++.+ . . .... ......+.+++.++..+|+.|+.++.++ +|.++..++.+++..+++++
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence 9999999988877654321 1 1 1111 1223445567788899999988776543 57778888899999999999
Q ss_pred HhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 043087 262 VLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFD 313 (754)
Q Consensus 262 ~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~d 313 (754)
.+|.|+++|||++|+++++. +..++..++++.+. ++|.|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999999999964 55777888998877 9999999999999987
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=9.8e-26 Score=257.81 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccC
Q 043087 21 FVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMD 100 (754)
Q Consensus 21 l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d 100 (754)
+.-=+++++.+.+..++.+|+.+|..+-++++|+++||.++|++++.++-. .. ....+ +.++.+++.+|.+|++++
T Consensus 16 ~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~--~d-~i~le-IteIvL~I~LFa~Gl~L~ 91 (810)
T TIGR00844 16 SCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGN--TD-SITLE-ISRILLCLQVFAVSVELP 91 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhccc--ch-HHHHH-HHHHHHHHHHHHHHHhCC
Confidence 333333444555555666699999999999999999999999877522110 01 12223 888999999999999999
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCCchHHHHHHHHHHhcccHHHHHHHHH---hcCccCCch
Q 043087 101 TAYLRTNMDLAATIASGGLLVSFVFGIILTYIS-RFVLDIKDNTPAFSITITILLANSASPVVMRLID---ELKFNTSEL 176 (754)
Q Consensus 101 ~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~---e~~~l~s~~ 176 (754)
.+.+++.++..+.+.+.++.+++++++++++++ .++ ++..++++|+++++|++..+..+++ ..+ ++.++
T Consensus 92 ~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL------~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL 164 (810)
T TIGR00844 92 RKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL------NFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL 164 (810)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence 999999999999999999999999888887766 344 6677999999999999876777765 223 66788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---C-ch--hHH---HH-HHHHHHHHHHHHHHHHHHHHHHccCCCc-cchhH
Q 043087 177 GRLASTTSLINEVGCIIYYSSFVTVLSS---K-NF--ANA---IY-SIILTALLIIINMYLAKWFARWNKDSKY-VSNAQ 245 (754)
Q Consensus 177 g~l~ls~a~~~Di~~i~ll~~~~~~~~~---~-~~--~~~---~l-~~~~~~~~~~v~r~~~~~l~~~~~~~~~-~~~~~ 245 (754)
..++.+++.+||.++++++.+...+... + .. .|. ++ .+++.++++++++++..|+.++..+.+. ..+.+
T Consensus 165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf 244 (810)
T TIGR00844 165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF 244 (810)
T ss_pred HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 8999999999999998877666544421 1 11 111 11 2233444455555555555544332111 23556
Q ss_pred HHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhh---h
Q 043087 246 VLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTT-RTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKH---Y 321 (754)
Q Consensus 246 ~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~-~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~---~ 321 (754)
+.+.++++++++.+++.+|.++++++|++|+++.+..... +.....+......++..++|+++|+.+....+... .
T Consensus 245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~ 324 (810)
T TIGR00844 245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL 324 (810)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence 6677778888888999999999999999999999753322 22234466777789999999999999987766420 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHHHhhhcccc
Q 043087 322 QNILLVLLLLFSCIASRMIGTLFVCHRL--KIPRIKAVLLAFVLNLKGNFELILIDVEAGRSAT 383 (754)
Q Consensus 322 ~~~~~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~i 383 (754)
..|..+++.+++.++.|+.++++...+. ..+++|++++|| .++||..++.++.++++ .+.
T Consensus 325 ~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~-~~~ 386 (810)
T TIGR00844 325 DVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKS-QLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHH-hhh
Confidence 2366666667788888988888764443 468999999999 89999999999999888 554
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=1e-25 Score=257.26 Aligned_cols=329 Identities=18% Similarity=0.169 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 043087 25 SLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYL 104 (754)
Q Consensus 25 ~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l 104 (754)
..+++.+.....+++|+++|.+++++++|+++||..++...+ + + .+ .+..+++.+++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~----~--~--~~---~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP----L--D--RE---IVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC----C--C--HH---HHHHHHHHHHHHHHHhcCCHHHH
Confidence 344555666778999999999999999999999864432111 1 1 12 23446778899999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHH
Q 043087 105 RTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTS 184 (754)
Q Consensus 105 ~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a 184 (754)
|++++....+++.++++|++++....+++.++ ++..++++|+++|+|+++++.+++++.+ ++++..+++.+++
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 99999999999999999988876666655444 6778999999999999999999999976 6788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-C--chhHH----HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHH
Q 043087 185 LINEVGCIIYYSSFVTVLSS-K--NFANA----IYSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLLVLVVSLA 257 (754)
Q Consensus 185 ~~~Di~~i~ll~~~~~~~~~-~--~~~~~----~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl~~~l~~~ 257 (754)
++||..+++++.+...+..+ + +.... ....+..++++++..++..|+.++..+. +.....++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGF 222 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence 99999999999888877643 2 11111 1122334455566667777776554332 3456677888999999
Q ss_pred HHHHHhCchHhHHHHHHHhhccCCCCc------hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhh----HH---
Q 043087 258 FSIEVLGYNSTITGFLLGVFFPRDGKT------TRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQ----NI--- 324 (754)
Q Consensus 258 ~~a~~~G~s~~lGaflaGl~i~~~~~~------~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~----~~--- 324 (754)
+++|.+|.|+++++|++|+++++..+. .+...+.+++.+..++.+++|+++|++++.. +.+.+. .+
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~~~~~ 301 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVAPAAV 301 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhHHH
Confidence 999999999999999999999975432 2344567888888999999999999998742 111100 01
Q ss_pred --HH---HHHHHHHHHHHHHHHHHHHH--h-----hcCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043087 325 --LL---VLLLLFSCIASRMIGTLFVC--H-----RLKIPRIKAVLLAFVLNLKGNFELILIDV 376 (754)
Q Consensus 325 --~~---~~~~~~~~~~~K~~~~~l~~--~-----~~~~~~~~~~~lg~~l~~kG~~~l~l~~~ 376 (754)
.. .+++.......|++.++... + ..++++|+.+.++| .+.||.++++++..
T Consensus 302 ~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~ 364 (525)
T TIGR00831 302 ILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALS 364 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHH
Confidence 00 11112233345554433321 1 12578999999999 69999999988754
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-21 Score=218.35 Aligned_cols=344 Identities=17% Similarity=0.181 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhc
Q 043087 19 STFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLE 98 (754)
Q Consensus 19 ~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle 98 (754)
..+++..+++..+.+...+.+|++.|.+..+++.|++.||.+++...+..+.. .++ +-.+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~-----~el---~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELD-----PEL---FLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCC-----hHH---HHHHHHHHHHHHhHhc
Confidence 45778888888999999999999999999999999999999888777521111 122 3377788899999999
Q ss_pred cChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHH
Q 043087 99 MDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGR 178 (754)
Q Consensus 99 ~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~ 178 (754)
+|.+.+|++++....+++.+++++.+......+++.+ +.++..++.+|+++|+|++..+..++++.+ .+.+..+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999998876666665532 456778999999999999999999988865 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-Cch--hHHHH----HHHHHHHHHHHHHHHHHHHHHHccCCCc-cchhHHHHHH
Q 043087 179 LASTTSLINEVGCIIYYSSFVTVLSS-KNF--ANAIY----SIILTALLIIINMYLAKWFARWNKDSKY-VSNAQVLFLL 250 (754)
Q Consensus 179 l~ls~a~~~Di~~i~ll~~~~~~~~~-~~~--~~~~l----~~~~~~~~~~v~r~~~~~l~~~~~~~~~-~~~~~~~~vl 250 (754)
+..+++++||..+++++.+...+..+ +.. .+... ..+..+.++++..++..|+.++..+.+- .........+
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 99999999999999999988877653 221 22221 1222333444444555555554433210 1345668889
Q ss_pred HHHHHHHHHHHHhCchHhHHHHHHHhhcc-----CCCC-chHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHH
Q 043087 251 VLVVSLAFSIEVLGYNSTITGFLLGVFFP-----RDGK-TTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNI 324 (754)
Q Consensus 251 ~~~l~~~~~a~~~G~s~~lGaflaGl~i~-----~~~~-~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~ 324 (754)
...+..+.++|.+|.|++++.+++|+... +..+ ..+...+.+++....++..+.|+..|++++....... .+
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~--~~ 309 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL--GL 309 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh--hH
Confidence 99999999999999999999999998773 1112 2255666788888999999999999999999887663 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC------CChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 325 LLVLLLLFSCIASRMIGTLFVCHRLK------IPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 325 ~~~~~~~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
..++..++..+++|++.++...+..+ .++++++.++| -++||.++++++.....
T Consensus 310 ~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~ 369 (429)
T COG0025 310 LGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPL 369 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchh
Confidence 66777788899999999999988743 89999999999 69999999998877553
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-22 Score=208.30 Aligned_cols=378 Identities=13% Similarity=0.143 Sum_probs=307.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Q 043087 16 PLVSTFVQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLI 95 (754)
Q Consensus 16 ~l~~~l~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~ 95 (754)
++..+++.-.+++.++.+...++.|+|.|..+-++..|++.|.-++|.++. ++ ..+...++.+.+++++|..
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f-------dN-y~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF-------DN-YPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc-------Cc-cHHHHHHHHHHHHHHhhcC
Confidence 344555555677778899999999999999999999999999999997763 12 3444568888889999999
Q ss_pred hhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCc
Q 043087 96 GLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSE 175 (754)
Q Consensus 96 Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~ 175 (754)
|+..+++.+|...++++.++..|+++|-.+....++|+++. .|...+.+|++..+|+-+.|..+|.+++ +|.+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~er 148 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNER 148 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence 99999999999999999999999999988877778878777 6777899999999999999999998877 7888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--chhHHH-H----HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHH
Q 043087 176 LGRLASTTSLINEVGCIIYYSSFVTVLSSK--NFANAI-Y----SIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLF 248 (754)
Q Consensus 176 ~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~--~~~~~~-l----~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~ 248 (754)
.+.+.-.++--||..++++...++.+...+ +..+.. + ...+.++.++.+.++..|+++|..-. +..+..+
T Consensus 149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil 225 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPIL 225 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHH
Confidence 999999999999999987765555554332 222222 1 23456677888889999999987543 4677788
Q ss_pred HHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHH
Q 043087 249 LLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVL 328 (754)
Q Consensus 249 vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~ 328 (754)
++...++...+++.+|-|+.+..+++|+++.|.+-..++.+-++.+=+.++..-+.|...|+..+.+++... ....++
T Consensus 226 ~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~i--avPail 303 (574)
T COG3263 226 ALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPI--AIPAIL 303 (574)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHh--hHHHHH
Confidence 889999999999999999999999999999987656677777888878889999999999999999988773 344556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHH
Q 043087 329 LLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPII 408 (754)
Q Consensus 329 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~ 408 (754)
+.+...+++|++++|+...-++.+++|.++++| -.-||.++++++....- .|.-..+-.|++..+.+++|..+....+
T Consensus 304 L~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~-aglena~l~FNvAF~VVLvSlliQG~tl 381 (574)
T COG3263 304 LSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMM-AGLENARLFFNVAFFVVLVSLLIQGSTL 381 (574)
T ss_pred HHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHh-cCCccceEEeehhHHHHHHHHHHccCcc
Confidence 666788899999999999999999999999999 69999999999998877 7765234466777777777777766555
Q ss_pred HHHhccc
Q 043087 409 ASILRRN 415 (754)
Q Consensus 409 ~~l~~~~ 415 (754)
.+..++.
T Consensus 382 ~~~a~~l 388 (574)
T COG3263 382 PWAAKKL 388 (574)
T ss_pred hHHHHhc
Confidence 5554443
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=2.9e-21 Score=220.53 Aligned_cols=357 Identities=14% Similarity=0.202 Sum_probs=251.8
Q ss_pred HHhcc-CCChhHHHHHHHHhcCcccccc--cccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHH
Q 043087 37 IFKPL-GQPGPISQMLAGLVLSPSFLSQ--INKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAAT 113 (754)
Q Consensus 37 l~~rl-~lP~ivg~ilaGillGP~~lg~--i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~ 113 (754)
.-|+. ++|..+..++.|+++|+...+. .+. ..|+ . +.+-.+.+..++|..|+++|.+.++++.+..+.
T Consensus 28 ~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~--~~l~----~---~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~ 98 (559)
T TIGR00840 28 THKVIRAVPESVLLIVYGLLVGGIIKASPHIDP--PTLD----S---SYFFLYLLPPIVLDAGYFMPQRNFFENLGSILI 98 (559)
T ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHcCCCCcc--CCcC----H---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444 4999999999999999864332 111 0111 1 234456677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHH
Q 043087 114 IASGGLLVSFVFGIILTYISRFVLD--IKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLINEVGC 191 (754)
Q Consensus 114 i~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~ 191 (754)
+++.+++++.++.....+++..... ....++..++.+|+++|+|++..+..++++.+ .+.++-.++.+++++||.++
T Consensus 99 lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDava 177 (559)
T TIGR00840 99 FAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVT 177 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHH
Confidence 9999999987766555554432211 11346778999999999999999999999988 68889999999999999999
Q ss_pred HHHHHHHHHHhhc--Cch--h---HH----HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHH
Q 043087 192 IIYYSSFVTVLSS--KNF--A---NA----IYSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLLVLVVSLAFSI 260 (754)
Q Consensus 192 i~ll~~~~~~~~~--~~~--~---~~----~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl~~~l~~~~~a 260 (754)
++++.++..+... +.. . .. ....+..++++++..++..++.|+.... +.....++++.+++++.++
T Consensus 178 IVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lA 254 (559)
T TIGR00840 178 VVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYLSYLFA 254 (559)
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHH
Confidence 9999888776542 111 1 11 1112224455666777777777776543 2455667888888999999
Q ss_pred HHhCchHhHHHHHHHhhccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHH
Q 043087 261 EVLGYNSTITGFLLGVFFPRD-----GKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCI 335 (754)
Q Consensus 261 ~~~G~s~~lGaflaGl~i~~~-----~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~ 335 (754)
|.+|.|++++.+++|+++.+. ++..+...+.+.+.+..+...+.|+.+|+++-... .. ..|..+++.+++++
T Consensus 255 E~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~-~~~~~i~~~l~~~l 331 (559)
T TIGR00840 255 ETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HE-WNWAFVVATLSFCV 331 (559)
T ss_pred HHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hh-HHHHHHHHHHHHHH
Confidence 999999999999999999642 22334455677788888999999999999763221 11 12444555556777
Q ss_pred HHHHHHHHHHHhh------cCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchh-hHHHHHHHHHHHHHh----H
Q 043087 336 ASRMIGTLFVCHR------LKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPM-IHRMLLIVVVLNTLI----T 404 (754)
Q Consensus 336 ~~K~~~~~l~~~~------~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~-~~~~lv~~~vls~~i----~ 404 (754)
+.|+++++..++. .+++++|.+.+++ .+.||.++++++...-+ .+.- ..+ ..+....++++|.++ .
T Consensus 332 l~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~-~~~~-~~~~i~~~t~~VVl~TvlvqG~T~ 408 (559)
T TIGR00840 332 IYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDE-KIFP-YKFLFVTTTLVVVFFTVIFQGGTI 408 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCC-CCcc-hHHHHHHHHHeeehHHHHHHHhhH
Confidence 8999888876643 3589999999999 69999999988875443 3332 223 333322333333333 4
Q ss_pred HHHHHHHh
Q 043087 405 GPIIASIL 412 (754)
Q Consensus 405 ~pl~~~l~ 412 (754)
+|+++++.
T Consensus 409 ~pl~~~L~ 416 (559)
T TIGR00840 409 KPLVEVLK 416 (559)
T ss_pred HHHHHHhC
Confidence 67766653
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.75 E-value=3.5e-15 Score=161.85 Aligned_cols=298 Identities=15% Similarity=0.183 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhhccChh-------HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcc
Q 043087 85 FISRILFMFLIGLEMDTA-------YLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANS 157 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~-------~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~T 157 (754)
..-..++.|.+|+|+.-+ ..||..-. ..-++.|+++|.++-. .+..- .....-.+| +-+.|
T Consensus 68 DgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~-----~~n~~-----~~~~~~GW~-Ip~AT 135 (423)
T PRK14853 68 DGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYV-----AVNLA-----GGGALRGWA-IPTAT 135 (423)
T ss_pred HhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHH-----HHhCC-----chhhhhhhh-hhhhh
Confidence 333446889999999543 33332222 3568888999976422 22220 011122232 34668
Q ss_pred cHHHHHHHHHhcCc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Q 043087 158 ASPVVMRLIDELKF-NTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIY-SIILTALLIIINMYLAKWFARWN 235 (754)
Q Consensus 158 s~~vv~~lL~e~~~-l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l-~~~~~~~~~~v~r~~~~~l~~~~ 235 (754)
+.+....+|+.+|- .++..+...++.+++||+.++++++++. +++.....+ ..+...+++ |+.++.
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~a~~~~~~l--------~~l~~~ 203 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLLALVPLALF--------WLLVQK 203 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHHHHHHHHHH--------HHHHHc
Confidence 88889999999875 5889999999999999999999988776 222222211 111111111 222232
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCC-----------CchHHHHHHHHHHHHHHHHHHH
Q 043087 236 KDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDG-----------KTTRTLFKKLAYSIHNFVLPIY 304 (754)
Q Consensus 236 ~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~-----------~~~~~~~ek~~~~~~~~f~plF 304 (754)
. +++.+.+.++. +.+.+.++..|+|+.+|+|++|+++|... +..+++.++++.++..+++|+|
T Consensus 204 ~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLF 277 (423)
T PRK14853 204 R----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVF 277 (423)
T ss_pred C----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33455555543 35677899999999999999999999411 1245678889888899999999
Q ss_pred -HHHhhcccch-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHH
Q 043087 305 -FGYMGFQFDI-RDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELI 372 (754)
Q Consensus 305 -F~~~G~~~dl-~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~ 372 (754)
|+..|.++|. ..+.+. ..-.....+++..+++|.++.+..++.. +++|++-.-+|++-+..=++++-
T Consensus 278 AFANaGV~l~~~~~~~~~-~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlF 356 (423)
T PRK14853 278 AFFSAGVAIGGLSGLGAA-LTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLL 356 (423)
T ss_pred HHHHhhheecCchhHHHH-hhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 434222 1112566778889999999988877653 57888888888855555577888
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcc
Q 043087 373 LIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRR 414 (754)
Q Consensus 373 l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~ 414 (754)
+++.+++..... .++.--.+++..+++.+++-.+++...++
T Consensus 357 I~~LAf~~~~~~-~~~aKigil~~S~~s~~~G~~~l~~~~~~ 397 (423)
T PRK14853 357 IGELAFGGGSAR-DDAVKVGVLTGSLIAALLASVLLRLRNRK 397 (423)
T ss_pred HHHhhcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888301212 22233334455556555555555544443
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.9e-14 Score=143.34 Aligned_cols=342 Identities=13% Similarity=0.120 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 043087 25 SLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYL 104 (754)
Q Consensus 25 ~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l 104 (754)
+.+.+.+...-++-+++-+...+---+.|+++||+++++.++..+. +.+.+...++.+-+..=.|.++.|+.-+.+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wg----n~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWG----NKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcccc----CcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 3444455555556667767777777789999999999998873321 111222236666666788999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCc---cCCchHHHHH
Q 043087 105 RTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKF---NTSELGRLAS 181 (754)
Q Consensus 105 ~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~---l~s~~g~l~l 181 (754)
.++++...++-+.-+++-+++.++..|.+... .+...++.++.++++|++.....+..+.+. .+.++..+..
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~-----lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN-----LNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 99998877665555555566666666655432 245668999999999997555556554443 4446667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---chh--HH---HH-H----HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHH
Q 043087 182 TTSLINEVGCIIYYSSFVTVLSSK---NFA--NA---IY-S----IILTALLIIINMYLAKWFARWNKDSKYVSNAQVLF 248 (754)
Q Consensus 182 s~a~~~Di~~i~ll~~~~~~~~~~---~~~--~~---~l-~----~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~ 248 (754)
+++-.||..+++++-+..-+...+ ... |. ++ - .+++.+++++.|..+++-.++.--+ .|+++.+
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~ 247 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIF 247 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHH
Confidence 999999999999887776654332 111 11 11 1 2234455666666666655543333 5888888
Q ss_pred HHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh---hHH
Q 043087 249 LLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTR-TLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHY---QNI 324 (754)
Q Consensus 249 vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~-~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~---~~~ 324 (754)
-+.+.+.++.+.+.+|.+-.+-.|.||.+++-+.-+.+ +...+.......++.-.||++.|..++++.++... ..|
T Consensus 248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw 327 (467)
T KOG4505|consen 248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW 327 (467)
T ss_pred HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence 89999999999999999999999999999995543332 33345666777788889999999999988765320 246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 325 LLVLLLLFSCIASRMIGTLFVCHRL--KIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 325 ~~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
-.+++-+.+.+.-|+-++++.-.+. -.+|||++++|. .+|.|.-++..+.++..
T Consensus 328 rlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 328 RLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 5665555555555666555543322 147999999999 89999988877776554
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.3e-14 Score=157.81 Aligned_cols=381 Identities=16% Similarity=0.187 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHhccC---CChhHHHHHHHHhcCcccccccccc------cccccccchHHHHHHHHHHHHHHHH
Q 043087 22 VQISLMLVIAHIFNLIFKPLG---QPGPISQMLAGLVLSPSFLSQINKI------RSFFIQDLSAFYYRVFAFISRILFM 92 (754)
Q Consensus 22 ~~i~lil~~~~~~~~l~~rl~---lP~ivg~ilaGillGP~~lg~i~~~------~~~f~~~~~~~~~~~l~~igli~ll 92 (754)
+-.+.++.++.+.++++++-| +|.-+.-++-|+++|-......... .+.|.++ .+-.+.+--+.
T Consensus 38 ~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~-------~ff~vLLPpii 110 (575)
T KOG1965|consen 38 LFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD-------LFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc-------HHHHHhhchhh
Confidence 334445556778889999888 9999999999999985432211110 1133322 13334445588
Q ss_pred HHHhhccChhHHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCc
Q 043087 93 FLIGLEMDTAYLRTNMDLAATIASGGLLVSFV-FGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKF 171 (754)
Q Consensus 93 F~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~ 171 (754)
|..|.+++.+.++++.-....+++.|..++.. +|.++.++.. ......+.+..++.+|+.+|.|+|..+..+++|++
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 99999999999999999999999888776644 4554443222 22233678889999999999999999999999998
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hh---HHHH----HHHHHHHHHHHHHHHHHHHHHHccCCCccch
Q 043087 172 NTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKN-FA---NAIY----SIILTALLIIINMYLAKWFARWNKDSKYVSN 243 (754)
Q Consensus 172 l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~-~~---~~~l----~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~ 243 (754)
....+-.++.+++++||.++++++..+......+. .+ ..+. .......+++..+.+...+.|.+.-++ .+.
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~~~ 267 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-TPS 267 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcH
Confidence 55678899999999999999999998887654431 11 1111 111122333333433334444433332 346
Q ss_pred hHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCC-----CchHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhh
Q 043087 244 AQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDG-----KTTRTLFKKLAYSIHNFVLPIYFGYMGFQ-FDIRDL 317 (754)
Q Consensus 244 ~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~-----~~~~~~~ek~~~~~~~~f~plFF~~~G~~-~dl~~l 317 (754)
.+..+.+++....+++||.+|+++++..+..|+++++.. +..+.....+.....-+---+-|+++|+. +|....
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 677888999999999999999999999999999999642 33344455566666666677779999963 344433
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc------C----CChHHHHHHHHHhhhhhhHHHHHHHHhhhcccc-ccc
Q 043087 318 LKHYQNILLVLLLLFSCIASRMIGTLFVCHRL------K----IPRIKAVLLAFVLNLKGNFELILIDVEAGRSAT-WWS 386 (754)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~------~----~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~i-i~~ 386 (754)
.. .....+....++.+++|..-.+-.+.+. + +|.++-..++|.-.-||.++++++.--..+.+. . .
T Consensus 348 ~~--~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~-~ 424 (575)
T KOG1965|consen 348 VY--KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTG-G 424 (575)
T ss_pred ee--echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccccc-c
Confidence 22 1123455556677778877666555544 3 555666777776558999999887542221110 1 1
Q ss_pred hhhHHHHHHHHHHHHH----hHHHHHHHHhccc
Q 043087 387 PMIHRMLLIVVVLNTL----ITGPIIASILRRN 415 (754)
Q Consensus 387 ~~~~~~lv~~~vls~~----i~~pl~~~l~~~~ 415 (754)
+..++.-+.++++|++ .+.|+++++-...
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~ 457 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISV 457 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhcccc
Confidence 2233333344444443 4789998875543
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.45 E-value=2e-11 Score=130.31 Aligned_cols=262 Identities=18% Similarity=0.265 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhccc---CCCchHHHHHHHHHHh
Q 043087 85 FISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLDI---KDNTPAFSITITILLA 155 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~~---~~~~~~~~l~i~~~ls 155 (754)
..-..++.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++=. .+..-++ .+|..+.+.=+++++
T Consensus 58 DgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~-----~~n~~~~~~~~GW~IP~ATDiAFal- 131 (373)
T TIGR00773 58 DGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYL-----AFNANDPITREGWAIPAATDIAFAL- 131 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh-----heecCCCcccCccccccHHHHHHHH-
Confidence 333445889999999877653 233443 3457888888866422 2222111 234433333333222
Q ss_pred cccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 156 NSASPVVMRLIDEL-KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARW 234 (754)
Q Consensus 156 ~Ts~~vv~~lL~e~-~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~ 234 (754)
-+|.=. +..+..+....++-+++||+.++++++++.+ ++.....+...... +. ..++.+|
T Consensus 132 --------gvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L~~a~~~---~~----~l~~~~~ 192 (373)
T TIGR00773 132 --------GVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAALLVAAVA---IA----VLAVLNR 192 (373)
T ss_pred --------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHHHHHHHH---HH----HHHHHHH
Confidence 222222 2366677888999999999999998877652 22222211111110 00 1122333
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHH----HHHHHHHHHH-HHHhh
Q 043087 235 NKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAY----SIHNFVLPIY-FGYMG 309 (754)
Q Consensus 235 ~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~----~~~~~f~plF-F~~~G 309 (754)
.. +++...+.++.+ +..+ .....|+|+.+|+|++|+++|+..+..++..+|+|. ++..+++|+| |+..|
T Consensus 193 ~~----v~~~~~y~~lgv-llW~-~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAG 266 (373)
T TIGR00773 193 CG----VRRLGPYMLVGV-ILWF-AVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAG 266 (373)
T ss_pred cC----CchhhHHHHHHH-HHHH-HHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32 233333333332 2222 337999999999999999999754333233344444 4778899999 99999
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 310 FQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 310 ~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
.++|...+.. ........+++..+++|.++++..++.. +++|++-.-+|++-..-=++++-+.+.+++
T Consensus 267 v~l~~~~~~~--~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 267 VSLQGVSLNG--LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred eeeecCcchh--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9998755433 2223466778889999999999887763 578888888888544445677788888885
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=3.5e-08 Score=107.28 Aligned_cols=290 Identities=17% Similarity=0.179 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCchHHHHHHHHHH
Q 043087 83 FAFISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLDI--KDNTPAFSITITILL 154 (754)
Q Consensus 83 l~~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~l~i~~~l 154 (754)
+-.....++.|.+|+|+.-+.+. ++.|++ ..-+++|+++|.++=. .+..-++ .+|..+.+
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~-----~~n~~~~~~~GWgIPmA------- 139 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF-----FLNADTPSQHGFGIPMA------- 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh-----heecCCCccCccccccH-------
Confidence 34444556889999999876653 223333 3457888888866421 2222111 13333222
Q ss_pred hcccHHHHHHHHHhcC-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 043087 155 ANSASPVVMRLIDELK-FNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSII-LTALLIIINMYLAKWFA 232 (754)
Q Consensus 155 s~Ts~~vv~~lL~e~~-~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~r~~~~~l~ 232 (754)
|+.+...-++.=.| ..++.+....++-+++||+.++++++++.+ ++.....+... ....+. ++.
T Consensus 140 --TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L~~a~~~~~~l--------~~l 205 (438)
T PRK14856 140 --TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWLLGALGVVLVL--------AVL 205 (438)
T ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHHHHHHHHHHHH--------HHH
Confidence 33223333332222 256677788999999999999998877652 22222211111 111111 222
Q ss_pred HHccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCch---------------------------
Q 043087 233 RWNKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTT--------------------------- 285 (754)
Q Consensus 233 ~~~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~--------------------------- 285 (754)
+|.. ++....+.++. +..-+....-|+|+.+...+.|+++|..++..
T Consensus 206 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T PRK14856 206 NRLN----VRSLIPYLLLG--VLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQ 279 (438)
T ss_pred HHcC----CccccHHHHHH--HHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchh
Confidence 3322 12333333333 23344567899999999999999999532210
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHH-HHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043087 286 -----------------RTLFKKLAYSIHNFVLPIY-FGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCH 347 (754)
Q Consensus 286 -----------------~~~~ek~~~~~~~~f~plF-F~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 347 (754)
+++.+.+..++..+.+|+| |.-.|..++...... .-.....+++..+++|.++.+..++
T Consensus 280 ~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~---~~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 280 EILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE---VDKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc---cCcHHHHHHHHHHhcchHHHHHHHH
Confidence 1122334344666889999 889999998543221 1234556677888899998888776
Q ss_pred hc----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhhcc--ccccchhhHHHHHHHHHHHHHhHHHHHH
Q 043087 348 RL----------KIPRIKAVLLAFVLNLKGNFELILIDVEAGRS--ATWWSPMIHRMLLIVVVLNTLITGPIIA 409 (754)
Q Consensus 348 ~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~--~ii~~~~~~~~lv~~~vls~~i~~pl~~ 409 (754)
.. +++|++-.-+|++-+.-=++++-+++.+++ . ... -++.--.+++..+++.+++..+++
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~-~~~~~~-~~~aKigIL~gS~lsai~G~~~L~ 428 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT-SEHKDA-MEVAKIAILLGSLISGIIGALYLF 428 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 578888888887544445677888888886 3 222 223333344445555544444444
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.94 E-value=2e-07 Score=100.03 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcc---cCCCchHHHHHHHHHH
Q 043087 84 AFISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLD---IKDNTPAFSITITILL 154 (754)
Q Consensus 84 ~~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~l~i~~~l 154 (754)
-..-..++.|.+|+|+.-+.+. ++.|++ +.-++.|+++|.++=. ....-+ ..+|..+.+.=+++
T Consensus 64 NDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~-----~~n~g~~~~~~GWgIPmATDIAF-- 136 (389)
T PRK09560 64 NDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA-----AFNYNNPETLRGWAIPAATDIAF-- 136 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh-----eeecCCCcccCccccccHHHHHH--
Confidence 3344456889999999876653 223333 3457888888876422 222211 12344332322222
Q ss_pred hcccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 043087 155 ANSASPVVMRLIDEL-KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSII-LTALLIIINMYLAKWFA 232 (754)
Q Consensus 155 s~Ts~~vv~~lL~e~-~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~r~~~~~l~ 232 (754)
..-+|+=. +..+..+....++-+++||+.++++++++.+ ++.....+... ....+. ++.
T Consensus 137 -------AlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L~~a~~~~~~l--------~~l 197 (389)
T PRK09560 137 -------ALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPALALAAIAIAVL--------FLL 197 (389)
T ss_pred -------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHHHHHHHHHHHH--------HHH
Confidence 22222222 2256677888999999999999998877652 22222211111 111111 222
Q ss_pred HHccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCc------hHHHHHHHHHHHHHHHHHHH-H
Q 043087 233 RWNKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKT------TRTLFKKLAYSIHNFVLPIY-F 305 (754)
Q Consensus 233 ~~~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~------~~~~~ek~~~~~~~~f~plF-F 305 (754)
+|.. ++....+..+.+ ..-+....-|+|+.++..++|+++|...+. -+++.+++..++..+.+|+| |
T Consensus 198 n~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAl 271 (389)
T PRK09560 198 NRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAF 271 (389)
T ss_pred HHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHh
Confidence 3322 123333333332 334455688999999999999999953221 13455566666666779999 8
Q ss_pred HHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHH
Q 043087 306 GYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILID 375 (754)
Q Consensus 306 ~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~ 375 (754)
.-.|..++-..+.. ..-.....+++..+++|.++.+..++.. +.+|++-.-+|.+-+.-=++++-+++
T Consensus 272 aNAGV~l~~~~~~~--~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~ 349 (389)
T PRK09560 272 ANAGVSLAGISLSS--LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGS 349 (389)
T ss_pred hcCCeeecCCcHHh--ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999884322322 1112455667788889999988877653 57888888888754444567788888
Q ss_pred Hhhh
Q 043087 376 VEAG 379 (754)
Q Consensus 376 ~~~~ 379 (754)
.++.
T Consensus 350 LAF~ 353 (389)
T PRK09560 350 LAFG 353 (389)
T ss_pred hhcC
Confidence 8884
No 22
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.94 E-value=2.2e-07 Score=99.40 Aligned_cols=261 Identities=16% Similarity=0.222 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcc---cCCCchHHHHHHHHHHh
Q 043087 85 FISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLD---IKDNTPAFSITITILLA 155 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~l~i~~~ls 155 (754)
..-..++.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++=. .+..-. .++|..+.+.=++++
T Consensus 65 DgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~-----~~n~~~~~~~~GWaIP~ATDIAFa-- 137 (388)
T PRK09561 65 DGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL-----LFNYADPVTREGWAIPAATDIAFA-- 137 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh-----heecCCCcccCccccccHHHHHHH--
Confidence 344456889999999877663 233443 3457888888866422 222211 123443333333322
Q ss_pred cccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 043087 156 NSASPVVMRLIDEL-KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIIL-TALLIIINMYLAKWFAR 233 (754)
Q Consensus 156 ~Ts~~vv~~lL~e~-~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~r~~~~~l~~ 233 (754)
.-++.=. +..+..+....++-+++||+.++++++++. +++..+..+.... ...+. ++.+
T Consensus 138 -------lgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~~a~~~~~~l--------~~ln 198 (388)
T PRK09561 138 -------LGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSDLSMVSLGVAAVAIAVL--------AVLN 198 (388)
T ss_pred -------HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCCccHHHHHHHHHHHHHH--------HHHH
Confidence 2222222 235667788899999999999999887765 2222222211111 11111 2223
Q ss_pred HccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCc----hHHHHHHHHHHHHHHHHHHH-HHHh
Q 043087 234 WNKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKT----TRTLFKKLAYSIHNFVLPIY-FGYM 308 (754)
Q Consensus 234 ~~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~----~~~~~ek~~~~~~~~f~plF-F~~~ 308 (754)
|.. ++....+.++.+ ..-+....-|+|+.++..+.|+.+|...+. -+++.+++..++..+.+|+| |.-.
T Consensus 199 ~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNA 272 (388)
T PRK09561 199 LCG----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANA 272 (388)
T ss_pred HcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcC
Confidence 322 223333333332 334456789999999999999999963221 23455666666777799999 8889
Q ss_pred hcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHHHhh
Q 043087 309 GFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILIDVEA 378 (754)
Q Consensus 309 G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~ 378 (754)
|..++-..+.. ..-.....+++..+++|.++.+..++.. +++|++-.-+|++-..-=++++-+.+.++
T Consensus 273 GV~l~~~~~~~--~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 350 (388)
T PRK09561 273 GVSLQGVTLDG--LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAF 350 (388)
T ss_pred CeeeccCcHHh--hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98883222221 1112455667788889999888877653 57888888888754444467777888888
Q ss_pred h
Q 043087 379 G 379 (754)
Q Consensus 379 ~ 379 (754)
+
T Consensus 351 ~ 351 (388)
T PRK09561 351 G 351 (388)
T ss_pred C
Confidence 5
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.94 E-value=2.2e-07 Score=99.10 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCchHHHHHHHHHHhc
Q 043087 85 FISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLD--IKDNTPAFSITITILLAN 156 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~l~i~~~ls~ 156 (754)
..-..++.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++=.. +..-+ ..+|..+.+.=++++
T Consensus 62 DgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~-----~n~~~~~~~GW~IP~ATDIAFA--- 133 (383)
T PRK14854 62 DGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS-----INHDIKVINGWAIPSATDIAFT--- 133 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh-----hccCCcccCccccccHHHHHHH---
Confidence 333445889999999876552 233443 34578888888764222 22111 123443323222222
Q ss_pred ccHHHHHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043087 157 SASPVVMRLIDEL-KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWN 235 (754)
Q Consensus 157 Ts~~vv~~lL~e~-~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~ 235 (754)
..++.=. +..+..+.-..++-+++||+.++++++++. +++..+..+......+..+ .+ +.|+.
T Consensus 134 ------lgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~~A~~~~~~l---~~---~nr~~ 197 (383)
T PRK14854 134 ------LGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSLSLLSLSLGTLFILAM---II---CNRIF 197 (383)
T ss_pred ------HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCccHHHHHHHHHHHHHH---HH---HHHhc
Confidence 2222222 236667777888899999999999887765 2222222221111111100 11 12211
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCc----hHHHHHHHHHHHHHHHHHHH-HHHhhc
Q 043087 236 KDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKT----TRTLFKKLAYSIHNFVLPIY-FGYMGF 310 (754)
Q Consensus 236 ~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~----~~~~~ek~~~~~~~~f~plF-F~~~G~ 310 (754)
. ++....+.++. +..-+....-|+|+.++..+.|+++|...+. -+++.+++...+..+.+|+| |+-.|.
T Consensus 198 ~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV 271 (383)
T PRK14854 198 K----INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGI 271 (383)
T ss_pred C----CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCe
Confidence 1 12233333332 2334456789999999999999999953211 23455566667778899999 888999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 311 QFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 311 ~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
.++-..+.. ..-.....+++..+++|.++.+..++.. +++|++-.-+|++-..-=++++-+++.+++
T Consensus 272 ~l~~~~~~~--~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 272 SFSGISFSI--LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred eeccCcHHh--hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 884222222 1123455667788889999888877653 478888888888545555777888888886
No 24
>PRK11175 universal stress protein UspE; Provisional
Probab=98.93 E-value=1.2e-08 Score=109.54 Aligned_cols=111 Identities=10% Similarity=0.174 Sum_probs=78.2
Q ss_pred CceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCCCCC
Q 043087 516 TRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQTGF 595 (754)
Q Consensus 516 ~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~~~~ 595 (754)
.++.++...... .+.++.|++.|++..+|||++|.|++....+.+ +++..+++++++||||-+.-++.....
T Consensus 81 ~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~------~gs~~~~l~~~~~~pvlvv~~~~~~~~ 152 (305)
T PRK11175 81 AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVI------FTPTDWHLLRKCPCPVLMVKDQDWPEG 152 (305)
T ss_pred cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhc------cChhHHHHHhcCCCCEEEecccccCCC
Confidence 345555544332 466899999999999999999999876554333 344678999999999887644322222
Q ss_pred CCCcEEEEeccCcc-------hHHHHHHHHHHhhCC-CEEEEEEEeeec
Q 043087 596 QLPVAAMLFFGGAD-------DREALALSKRIGKNS-NINLTVIRFLYA 636 (754)
Q Consensus 596 ~~~~~~~~f~GG~d-------dreaL~~a~rma~~~-~v~ltv~r~~~~ 636 (754)
.++ ++..-++++ +..|+++|.++|+.. +.+++++|+.+.
T Consensus 153 ~~I--lva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~ 199 (305)
T PRK11175 153 GKI--LVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPV 199 (305)
T ss_pred CeE--EEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecC
Confidence 221 344444433 267999999999887 999999999753
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.87 E-value=4.1e-07 Score=98.69 Aligned_cols=284 Identities=16% Similarity=0.189 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCCchHHHHHHHHHHhc
Q 043087 85 FISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLD--IKDNTPAFSITITILLAN 156 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~l~i~~~ls~ 156 (754)
..-..++.|.+|+|+.-+.+. ++.|++ ..-+++|+++|.++=. .+..-+ .++|....+
T Consensus 69 DgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~-----~~n~~~~~~~GWgIPmA--------- 134 (423)
T PRK14855 69 DGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT-----ALNAGGPGASGWGVPMA--------- 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh-----eeecCCCccCccccccH---------
Confidence 334456889999999877663 233443 3457788888865422 222211 123333322
Q ss_pred ccHHHHHHHHHhcC-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 157 SASPVVMRLIDELK-FNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSK-NFANAIYSIILTALLIIINMYLAKWFARW 234 (754)
Q Consensus 157 Ts~~vv~~lL~e~~-~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~-~~~~~~l~~~~~~~~~~v~r~~~~~l~~~ 234 (754)
|+.+...-+|+=+| ..+..+....++-+++||+.++++++++.+ ++ +..+.....+..+++ ++.+|
T Consensus 135 TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~~L~~a~~~~~~l---------~~ln~ 202 (423)
T PRK14855 135 TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNLLALLLAALTWALA---------LLAGR 202 (423)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCHHHHHHHHHHHHHH---------HHHHH
Confidence 33333333332222 255667788999999999999998877652 21 121111111111111 22233
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCC-c-----------------------------
Q 043087 235 NKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGK-T----------------------------- 284 (754)
Q Consensus 235 ~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~-~----------------------------- 284 (754)
.. ++....++.+.+ ..-+....-|+|+.++..+.|+++|..++ .
T Consensus 203 ~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (423)
T PRK14855 203 LG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDL 276 (423)
T ss_pred cC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhh
Confidence 22 223333333332 33445678899999999999999996311 1
Q ss_pred -------hHHHHHHHHHHHHHHHHHHH-HHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 043087 285 -------TRTLFKKLAYSIHNFVLPIY-FGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL------- 349 (754)
Q Consensus 285 -------~~~~~ek~~~~~~~~f~plF-F~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~------- 349 (754)
-+++.+++..++..+.+|+| |+-.|..++-.. .. .....+++..+++|.++.+..++..
T Consensus 277 ~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~-----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~ 350 (423)
T PRK14855 277 LERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG-----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGLAS 350 (423)
T ss_pred ccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC-----cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC
Confidence 11233444445566789999 888999885333 22 2345566778889999888877653
Q ss_pred ---CCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHH
Q 043087 350 ---KIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPII 408 (754)
Q Consensus 350 ---~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~ 408 (754)
+++|++-.-+|++-+.-=++++-+++.+++ ..-. -++.--.+++..+++.+++..++
T Consensus 351 lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~-~~~~-~~~aKigIL~~S~~aai~G~~~L 410 (423)
T PRK14855 351 LPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA-DAAL-LTQAKLGVLAASVLAALLGAGWL 410 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC-Cchh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888544545677888888886 3322 22222233444444444433333
No 26
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.83 E-value=2.1e-09 Score=118.43 Aligned_cols=328 Identities=16% Similarity=0.227 Sum_probs=215.1
Q ss_pred HHHHHHHhccC--CChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchh
Q 043087 32 HIFNLIFKPLG--QPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMD 109 (754)
Q Consensus 32 ~~~~~l~~rl~--lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k 109 (754)
.+.--+..+++ +|.-.-.|+.|+++|-.+.+.-.. ..+.-++ .++-..-+--++|-+|.-|.-+.+..+..
T Consensus 55 Ki~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~--~~~~L~s-----~vFFlyLLPPIvlDAGYfMp~r~Ff~Nlg 127 (670)
T KOG1966|consen 55 KIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI--APFFLES-----DVFFLYLLPPIVLDAGYFMPNRAFFENLG 127 (670)
T ss_pred HhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc--ccccccc-----cchhhhhcCHHHhcccccCccHHHHhccc
Confidence 33333333444 788888899999998654332211 0011111 11223334457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HH-HHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHH
Q 043087 110 LAATIASGGLLVSFVF-GI-ILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLIN 187 (754)
Q Consensus 110 ~~~~i~~~~~~l~~~~-~~-~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~ 187 (754)
..+..+..|.+.-... |. +.+....+.++.. ......+.+|...|..+|..|..+.+|.. .|.-+=-++.+++++|
T Consensus 128 tILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlN 205 (670)
T KOG1966|consen 128 TILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLN 205 (670)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhc
Confidence 9999999888764332 22 2222222333321 33456788899999999999999999988 5555667889999999
Q ss_pred HHHHHHHHHHHHHHhhcC--chh-----HHHH----HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHH
Q 043087 188 EVGCIIYYSSFVTVLSSK--NFA-----NAIY----SIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFLLVLVVSL 256 (754)
Q Consensus 188 Di~~i~ll~~~~~~~~~~--~~~-----~~~l----~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~vl~~~l~~ 256 (754)
|.+.+++.-+...+..-+ +.. ...+ ..+.++++++++..+....-|.+.+ ++-..-++++.+...+
T Consensus 206 DaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYla 282 (670)
T KOG1966|consen 206 DAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYLA 282 (670)
T ss_pred CceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHHH
Confidence 999999988887665322 111 1111 1112334455555555555555443 3445557888999999
Q ss_pred HHHHHHhCchHhHHHHHHHhhccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHH
Q 043087 257 AFSIEVLGYNSTITGFLLGVFFPRD-----GKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLL 331 (754)
Q Consensus 257 ~~~a~~~G~s~~lGaflaGl~i~~~-----~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~ 331 (754)
+..+|.+++|++++-.+.|+++... ......-+..+.......--++-|+..|.++-=. .+. ..|..+.+-+
T Consensus 283 YL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~-wd~~Fi~~T~ 359 (670)
T KOG1966|consen 283 YLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHH-WDFAFICLTL 359 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cce-eehhhhhhHH
Confidence 9999999999999999999999843 1222333444555666677788888889876422 222 2256666667
Q ss_pred HHHHHHHHHHHHHHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHH
Q 043087 332 FSCIASRMIGTLFVCHRL------KIPRIKAVLLAFVLNLKGNFELILID 375 (754)
Q Consensus 332 ~~~~~~K~~~~~l~~~~~------~~~~~~~~~lg~~l~~kG~~~l~l~~ 375 (754)
+.+.+.|.++++..+++. +++..|.+.++.. +-||.+++.+..
T Consensus 360 ~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~ 408 (670)
T KOG1966|consen 360 VFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVV 408 (670)
T ss_pred HHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEE
Confidence 778888999988887765 4677888887774 778888776543
No 27
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.5e-06 Score=89.45 Aligned_cols=253 Identities=18% Similarity=0.295 Sum_probs=150.7
Q ss_pred HHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhccc---CCCchHHHHHHHHHHhcccHHH
Q 043087 91 FMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLDI---KDNTPAFSITITILLANSASPV 161 (754)
Q Consensus 91 llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~~---~~~~~~~~l~i~~~ls~Ts~~v 161 (754)
+.+.+|+|+..+.+. +++|++ ..-++.|++.|.++ |.++..-++ ++|..+.+ |+.+-
T Consensus 74 FFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p~~~~GWaIP~A---------TDiAF 139 (390)
T COG3004 74 FFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDPATLEGWAIPMA---------TDIAF 139 (390)
T ss_pred HHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCChhhhcCcCcccH---------HHHHH
Confidence 678999999987774 334443 23466777777653 222222111 23443323 33333
Q ss_pred HHHHHHhc-CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 043087 162 VMRLIDEL-KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWNKDSKY 240 (754)
Q Consensus 162 v~~lL~e~-~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~ 240 (754)
...+++=+ +..++.+.-..++-+++||+-+++++++..+ .......+......+... ..+ +|..-
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al~~a~~~i~vL---~~l----N~~~v--- 205 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAALGIAALAIAVL---AVL----NRLGV--- 205 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHHHHHHHHHHHH---HHH----HHhCc---
Confidence 33333322 3467788888999999999999998877652 222222211111111111 111 12111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCch----HHHHHHHHHHHHHHHHHHH-HHHhhcccc--
Q 043087 241 VSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTT----RTLFKKLAYSIHNFVLPIY-FGYMGFQFD-- 313 (754)
Q Consensus 241 ~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~----~~~~ek~~~~~~~~f~plF-F~~~G~~~d-- 313 (754)
+....+++...++ -+.-..-|+|..+...+.|+.+|-....+ +++.+.+...+.-+.+|+| |.-.|.+++
T Consensus 206 -~~l~~Y~~~gviL--W~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~ 282 (390)
T COG3004 206 -RRLSPYLLVGVIL--WIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGV 282 (390)
T ss_pred -hhhhHHHHHHHHH--HHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCcccccc
Confidence 1122222322222 22335789999999999999999443333 3444445555667889999 889998877
Q ss_pred -hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 314 -IRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 314 -l~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
.+.+.+ ...+.+++..+++|.++.+..++.. +.+|++-...+++-...=++++-+.+.+++
T Consensus 283 ~~~~l~s-----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~ 354 (390)
T COG3004 283 SLSGLTS-----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFG 354 (390)
T ss_pred ccccccc-----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 444444 3455667788899999988877653 578888888888555555778888888888
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.70 E-value=3.1e-07 Score=98.42 Aligned_cols=265 Identities=16% Similarity=0.225 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhhccChhHHH---hchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcc
Q 043087 84 AFISRILFMFLIGLEMDTAYLR---TNMDLA---ATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANS 157 (754)
Q Consensus 84 ~~igli~llF~~Gle~d~~~l~---~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~T 157 (754)
-..-..++.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ |..+..-. + ...-.+|+ -..|
T Consensus 60 NDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~~~----~-~~~~GW~I-P~AT 128 (378)
T PF06965_consen 60 NDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNAGG----P-EAAHGWAI-PMAT 128 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--SS----T-THHHHTSS-SS--
T ss_pred HHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----HheeecCC----C-CcCceEEe-cccc
Confidence 3444456889999999876552 223433 34477788888653 21222211 1 01122221 2334
Q ss_pred cHHHHHHHHHhcC-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Q 043087 158 ASPVVMRLIDELK-FNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSII-LTALLIIINMYLAKWFARWN 235 (754)
Q Consensus 158 s~~vv~~lL~e~~-~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~r~~~~~l~~~~ 235 (754)
+.+....++.=.| ..+.......++-+++||+.++++++++.+ ++.....+... ....+. +..+|.
T Consensus 129 DIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L~~a~~~~~~l--------~~l~r~ 196 (378)
T PF06965_consen 129 DIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWLLLAAAALLLL--------FVLNRL 196 (378)
T ss_dssp -HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHHHHHHHHHHH--------HHHHHT
T ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHHHHHHHHHHHH--------HHHHHC
Confidence 4444444444333 255667788999999999999998887753 22211111111 111111 222332
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCch--------HHHHHHHHHHHHHHHHHHH-HH
Q 043087 236 KDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTT--------RTLFKKLAYSIHNFVLPIY-FG 306 (754)
Q Consensus 236 ~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~--------~~~~ek~~~~~~~~f~plF-F~ 306 (754)
.. +....+..+.+ ..-+....-|+|+.++..+.|+.+|..++.. +++.+++..++..+.+|+| |+
T Consensus 197 ~v----~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAla 270 (378)
T PF06965_consen 197 GV----RSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALA 270 (378)
T ss_dssp T-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CC----ceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhhe
Confidence 21 22333333322 3344556899999999999999999654331 2445556556677789999 89
Q ss_pred HhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043087 307 YMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL----------KIPRIKAVLLAFVLNLKGNFELILIDV 376 (754)
Q Consensus 307 ~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~l~~kG~~~l~l~~~ 376 (754)
-.|..++-..+... .-.....+++..+++|.++.+..++.. +++|++-.-+|.+-..-=++++-+.+.
T Consensus 271 NAGV~l~~~~~~~~--~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~L 348 (378)
T PF06965_consen 271 NAGVSLSGSSLGDL--TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGL 348 (378)
T ss_dssp HS----SSS---TH--HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHH
T ss_pred eCceEEecCchHhh--hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886654331 123345566788899999988877653 466777777777544445678888888
Q ss_pred hhh
Q 043087 377 EAG 379 (754)
Q Consensus 377 ~~~ 379 (754)
+++
T Consensus 349 AF~ 351 (378)
T PF06965_consen 349 AFD 351 (378)
T ss_dssp HST
T ss_pred HcC
Confidence 998
No 29
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.63 E-value=1.3e-07 Score=87.93 Aligned_cols=129 Identities=17% Similarity=0.298 Sum_probs=90.2
Q ss_pred eEEEEeecCCCcccchhh-hcc-cCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhh
Q 043087 436 RILSCAYEPRHASGQLVL-SAS-FGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFT 513 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l-~~~-~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~ 513 (754)
|||+|+.+.++...++.. ..+ ...+..++.+|.++.... ... ..+. ......++.+ +.+++..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~-~~~---~~~~--------~~~~~~~~~~---~~~~~~~ 65 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNH-SSP---SQLE--------VNVQRARKLL---RQAERIA 65 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCC-CCc---chhH--------HHHHHHHHHH---HHHHHHh
Confidence 699999999988888888 443 335678899999876543 211 0000 0011123334 5666555
Q ss_pred ccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 514 AQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 514 ~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
...++.++.....+ .+..++||+.+++.++|+|++|.|+++...+. .+++.+.+|++++||||.|+
T Consensus 66 ~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 66 ASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 55666777776665 46789999999999999999999988765333 34557999999999999875
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.19 E-value=0.00047 Score=72.33 Aligned_cols=255 Identities=11% Similarity=0.119 Sum_probs=144.0
Q ss_pred HHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhc
Q 043087 90 LFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDEL 169 (754)
Q Consensus 90 ~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~ 169 (754)
.++|-.|-++|++...+..||...+-+.-+.++++++..++.++ +. ++......+.+-.+++.|--..=..+..|.
T Consensus 53 ~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~-g~---~g~~Gls~laiiaa~~~~Ng~ly~al~~~y 128 (312)
T PRK12460 53 AFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFF-GA---EGIFGLSGLAIVAAMSNSNGGLYAALMGEF 128 (312)
T ss_pred HHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHc-Cc---ccccchHHHHHHHHHhcCcHHHHHHHHHHc
Confidence 48899999999999888888877776667777777777666533 32 222223355555666666666777777777
Q ss_pred CccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHH
Q 043087 170 KFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVLFL 249 (754)
Q Consensus 170 ~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~v 249 (754)
| -++|.| +.+...++|.=-+.++++... ++. +.| .. .
T Consensus 129 G-~~~d~g--A~~~~sl~~GPf~tm~aLga~-----------------------------gLA-~ip-------~~---~ 165 (312)
T PRK12460 129 G-DERDVG--AISILSLNDGPFFTMLALGAA-----------------------------GLA-NIP-------IM---A 165 (312)
T ss_pred C-CHhhhh--HHhhhhhccCcHHHHHHHHHH-----------------------------HHh-cCC-------hH---H
Confidence 7 333444 233333333222222111110 111 111 00 0
Q ss_pred HHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHH
Q 043087 250 LVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLL 329 (754)
Q Consensus 250 l~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~ 329 (754)
+-+.+=|++.|+++.|-.+ . ..+...+...+.+|+|-+..|.++|++++.+. .+. .++
T Consensus 166 ---------------lv~lilpILiGmilGNld~---~-~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~--G~~-GIl 223 (312)
T PRK12460 166 ---------------LVAALLPLVLGMILGNLDP---D-MRKFLTKGGPLLIPFFAFALGAGINLSMLLQA--GLA-GIL 223 (312)
T ss_pred ---------------HHHHHHHHHHHHHHhccch---h-hHHHHhccceEeHHHHHHHhcCCeeHHHHHHh--ChH-HHH
Confidence 0012345677777775322 1 22333455566899999999999999998763 222 233
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHH--HHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHH
Q 043087 330 LLFSCIASRMIGTLFVCHRLKIPRIKAVLLA--FVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPI 407 (754)
Q Consensus 330 ~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl 407 (754)
+.++.++.-....++..|++|.+.+.++.+| ..-+.-|...++-..-.++ .. .+..-..+-.++++|.+++|.+
T Consensus 224 L~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~---~~-~~~Ataqvaa~vivTail~P~~ 299 (312)
T PRK12460 224 LGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA---PV-AAAATAQVAASVIVTAILTPLL 299 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH---HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556666688898888877777 4433333333322222222 12 2223333456677777788888
Q ss_pred HHHHhccccc
Q 043087 408 IASILRRNEN 417 (754)
Q Consensus 408 ~~~l~~~~~~ 417 (754)
+.|++||.++
T Consensus 300 t~~~~k~~~~ 309 (312)
T PRK12460 300 TSWVAKKEAK 309 (312)
T ss_pred HHHHHHHhcc
Confidence 8888887654
No 31
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.04 E-value=0.012 Score=64.82 Aligned_cols=294 Identities=17% Similarity=0.136 Sum_probs=152.8
Q ss_pred CCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHH
Q 043087 42 GQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLV 121 (754)
Q Consensus 42 ~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l 121 (754)
.+|+++-.++.|+++.. +|.+++ | .+ .+..+.+....+-+-+++.=++.|+++++|.++|.+ +++..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~-----p-~~-s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l-~~F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS-----P-AS-SPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLL-LAFLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC-----C-Cc-chHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHH-HHHHHHHH
Confidence 47888888889999887 566621 1 11 223344555555566777778999999999998874 44444455
Q ss_pred HHHHHHHHHHHHhhhc-ccCCCchHHHHHHHHHHhcc------cHHHHHHHHHhcCccCCchHHHHHHHHHHHHH-HHHH
Q 043087 122 SFVFGIILTYISRFVL-DIKDNTPAFSITITILLANS------ASPVVMRLIDELKFNTSELGRLASTTSLINEV-GCII 193 (754)
Q Consensus 122 ~~~~~~~~~~~l~~~~-~~~~~~~~~~l~i~~~ls~T------s~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di-~~i~ 193 (754)
..++|+.+++.+++.. +++.|.. +.+++-| -+.-+.+. ++.+ .-.++.++.-|. ..-+
T Consensus 94 g~viG~~va~~l~~~~l~~~~wk~------ag~l~gsyiGGs~N~~Av~~a------l~~~--~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPEGWKI------AGMLAGSYIGGSVNFVAVAEA------LGVS--DSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHHHHHHhhcccchHHHH------HHHHHhcccCchhHHHHHHHH------HCCC--HHHHHHHHHHHHHHHHH
Confidence 5667777777776653 3222221 1222221 12222332 2222 224444444444 3333
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH----------HHHHHH--ccCCCccchhHHHHHHHHHHHHHH---
Q 043087 194 YYSSFVTVLSSKNFANAIYSIILTALLIIINMYLA----------KWFARW--NKDSKYVSNAQVLFLLVLVVSLAF--- 258 (754)
Q Consensus 194 ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~----------~~l~~~--~~~~~~~~~~~~~~vl~~~l~~~~--- 258 (754)
.+.++..+..... ..-++.- ....+. .++.++.. ..+...+.+.+..+.
T Consensus 160 ~~~~l~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~ 223 (378)
T PF05684_consen 160 WFAFLLALPPFAR---------------KFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSH 223 (378)
T ss_pred HHHHHHHHhhhhH---------------HhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHH
Confidence 3333333221000 0000000 000000 00011111 223333343433333
Q ss_pred -HHHHh-----Cch----HhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHH
Q 043087 259 -SIEVL-----GYN----STITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVL 328 (754)
Q Consensus 259 -~a~~~-----G~s----~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~ 328 (754)
+++.+ +.+ .++-....|++.. .+|..+.+ +-.+.+..+++=+||+.+|++.|+..+.+. +..+
T Consensus 224 ~la~~l~~~~~~~~~~~~~il~~tt~~l~~~-~~~~~~~l--~g~~~lg~~lly~ffa~IGa~a~i~~l~~a----p~~~ 296 (378)
T PF05684_consen 224 ALAAWLPPLFAGISSSTWLILTVTTLGLATS-FPPFRKLL--RGASELGTFLLYLFFAVIGASADISELLDA----PSLF 296 (378)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccchhhcC--CchHHHHHHHHHHHHHHHccccCHHHHHHh----HHHH
Confidence 33333 111 2334455566655 33443332 334557788899999999999999988763 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccc
Q 043087 329 LLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATW 384 (754)
Q Consensus 329 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii 384 (754)
++.++.+.+-.+..++.++++|+|..+...-+- =|.-|..+......+++ ..+.
T Consensus 297 l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~-~~Lv 350 (378)
T PF05684_consen 297 LFGFIILAIHLLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKG-PSLV 350 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcC-CccH
Confidence 445566678888899999999999987655544 35555555444444444 3443
No 32
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.83 E-value=0.0025 Score=66.57 Aligned_cols=255 Identities=11% Similarity=0.146 Sum_probs=141.8
Q ss_pred HHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-C-CCchHHHHHHHHHHhcccHHHHHHHHH
Q 043087 90 LFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDI-K-DNTPAFSITITILLANSASPVVMRLID 167 (754)
Q Consensus 90 ~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~-~-~~~~~~~l~i~~~ls~Ts~~vv~~lL~ 167 (754)
.++|-.|-++|++...+..||...+-+.-+.+.++++.+++.++ +.-+. + .+.....+.+-.+++.+-...=..+..
T Consensus 53 ~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~f-g~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~ 131 (314)
T PF03812_consen 53 VFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFF-GPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMG 131 (314)
T ss_pred HHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHc-CccccccccccchHHHHHHHHHhcCCHHHHHHHHH
Confidence 48899999999999999999988877777777777777766543 32110 0 012234566667777777778888888
Q ss_pred hcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHH
Q 043087 168 ELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWNKDSKYVSNAQVL 247 (754)
Q Consensus 168 e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~ 247 (754)
|.| -++|.| +.+...++|.=.+.++++-.+ ...++ ...
T Consensus 132 ~yG-d~~D~g--A~~i~sl~~GPf~tMl~LG~s--G~a~i-------------------------------------p~~ 169 (314)
T PF03812_consen 132 QYG-DEEDVG--AFSILSLNDGPFFTMLALGAS--GLANI-------------------------------------PWM 169 (314)
T ss_pred HhC-CHHHhH--HHHHHHhhhhHHHHHHHHhhc--cccCC-------------------------------------CHH
Confidence 877 233433 333333444333222211110 00000 000
Q ss_pred HHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 248 FLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 248 ~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
. +-..+=+++.|+++.|-. +...|+-.+....++|+|-...|..+|+..+.+. ...+.+
T Consensus 170 ~----------------lv~~llP~iiG~iLGNLD----~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~a-Gl~GIl 228 (314)
T PF03812_consen 170 S----------------LVAALLPIIIGMILGNLD----PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKA-GLSGIL 228 (314)
T ss_pred H----------------HHHHHHHHHHHHHHhcCC----HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHh-CcchHH
Confidence 0 012234788899998643 2345666778889999999999999999988764 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCChHHHHHHHHHhhhhhhHHH----HHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 043087 328 LLLLFSCIASRMIGTLFVCHRL-KIPRIKAVLLAFVLNLKGNFEL----ILIDVEAGRSATWWSPMIHRMLLIVVVLNTL 402 (754)
Q Consensus 328 ~~~~~~~~~~K~~~~~l~~~~~-~~~~~~~~~lg~~l~~kG~~~l----~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~ 402 (754)
+.+ ..++.-....++.-++. |-+-.- |+..++-+.-+. +++..--+ .... .+..-..+..++++|.+
T Consensus 229 Lgv--~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~-~~~~-~~~ATaQvAaavIvTai 300 (314)
T PF03812_consen 229 LGV--IVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPS-FAPY-AASATAQVAAAVIVTAI 300 (314)
T ss_pred HHH--HHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChh-hHhh-HHHHHHHHHHHHHHHHH
Confidence 222 22222223344444442 322222 333333333222 22222111 1122 22333345667788888
Q ss_pred hHHHHHHHHhcccc
Q 043087 403 ITGPIIASILRRNE 416 (754)
Q Consensus 403 i~~pl~~~l~~~~~ 416 (754)
++|.+++|.+||.|
T Consensus 301 l~P~lt~~~~kr~k 314 (314)
T PF03812_consen 301 LTPILTSWWAKRFK 314 (314)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888887653
No 33
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=97.61 E-value=0.00016 Score=68.53 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=47.9
Q ss_pred CceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCC--CceEEE
Q 043087 516 TRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAP--CSVGVL 587 (754)
Q Consensus 516 ~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~ap--CsVgIl 587 (754)
.++.++...... .+..+.|++.|++.++|+|+||-|++......+.++ ++-++|++++| |||-|.
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEEE
Confidence 445555554432 356899999999999999999999877654333221 27889999999 998764
No 34
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.52 E-value=0.00028 Score=64.77 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=75.1
Q ss_pred eEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhh
Q 043087 436 RILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFT 513 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~ 513 (754)
||++|+-+.......++. +.....+..++.+|.++-.. . . . ....++.+ +.+++..
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~--~----------~-~------~~~~~~~l---~~~~~~~ 58 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRL--N----------R-L------SEAERRRL---AEALRLA 58 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcc--c----------c-C------CHHHHHHH---HHHHHHH
Confidence 588888877766666666 33333555677777654211 0 0 0 01122333 4444444
Q ss_pred ccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccC-CCceEEE
Q 043087 514 AQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHA-PCSVGVL 587 (754)
Q Consensus 514 ~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~a-pCsVgIl 587 (754)
...++.. ....+ .+..+.|++.+++.++|+|++|.|++......+ ++++.++|+++| ||+|-|.
T Consensus 59 ~~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 59 EELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence 4434432 22233 456799999999999999999999887665433 344789999999 9997653
No 35
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.26 E-value=0.34 Score=53.40 Aligned_cols=93 Identities=10% Similarity=0.146 Sum_probs=56.1
Q ss_pred chHhHHHHHHHhhccCCC---CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043087 265 YNSTITGFLLGVFFPRDG---KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIG 341 (754)
Q Consensus 265 ~s~~lGaflaGl~i~~~~---~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~ 341 (754)
+....+|++.|+++.+-. ...+ .-.+..+.+.++.+-+|.+..=|.+++..+.+. ..++++.+++-.++.=+..
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~-id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~--a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYK-IDRKTIDRISGISLDLFLAMALMSLKLWVLADY--ALPLLIILAVQTILMVLFA 323 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 456689999999998421 1111 223334456677777777777788999988874 1222223333333344455
Q ss_pred HHHHHhhcCCChHHHHHHHH
Q 043087 342 TLFVCHRLKIPRIKAVLLAF 361 (754)
Q Consensus 342 ~~l~~~~~~~~~~~~~~lg~ 361 (754)
.++..+.+|-++ |+..++.
T Consensus 324 ~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 324 YFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHhhhhhCCCh-hHHHHhh
Confidence 666777888775 5555544
No 36
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.22 E-value=0.016 Score=60.42 Aligned_cols=251 Identities=10% Similarity=0.127 Sum_probs=129.3
Q ss_pred HHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----CchHHHHHHHHHHhcccHHHHHH
Q 043087 90 LFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKD-----NTPAFSITITILLANSASPVVMR 164 (754)
Q Consensus 90 ~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~l~i~~~ls~Ts~~vv~~ 164 (754)
.++|-.|-++|++...+..||...+-+.-+.+.++++..++.++ +. ++ ......+.+-.+++.|--..=..
T Consensus 53 ~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~-g~---~Gi~~g~~~GlS~LAiiaA~~nsNggLY~a 128 (314)
T TIGR00793 53 VWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRII-PE---DGVEVGFFAGLSTLALVAAMDMTNGGLYAS 128 (314)
T ss_pred HHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHc-Cc---CCccccceeccHHHHHHHHHhCCcHHHHHH
Confidence 47899999999999888778776666666777777777666533 32 22 11223455555566666556666
Q ss_pred HHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchh
Q 043087 165 LIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWNKDSKYVSNA 244 (754)
Q Consensus 165 lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~ 244 (754)
+..|.| -++|.| +.+...++|.=-+.++++-. + + ..+.
T Consensus 129 L~~qyG-d~~D~g--A~~i~sl~~GPf~TMi~LG~----s---------------------------------G--lA~i 166 (314)
T TIGR00793 129 IMQQYG-TKEEAG--AFVLMSLESGPLMTMVILGT----A---------------------------------G--IASF 166 (314)
T ss_pred HHHHcC-CHhhhh--hhhhhhhccCcHHHHHHHhh----c---------------------------------c--CCCC
Confidence 667766 233343 22222233321111111100 0 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHH
Q 043087 245 QVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNI 324 (754)
Q Consensus 245 ~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~ 324 (754)
... -+-..+=+++.|+++.|-.+ ...++-.+....++|+|-...|..+|++.+.+. ...
T Consensus 167 p~~----------------~lv~~ilPlliG~ilGNLD~----~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~a-Gl~ 225 (314)
T TIGR00793 167 EPH----------------VFVGAVLPFLVGFALGNLDP----ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQT-GLL 225 (314)
T ss_pred CHH----------------HHHHHHHHHHHHHHHhcCCH----HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHh-Ccc
Confidence 000 01123447888999986433 234455667788999999999999999888653 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHHHHhhhh-hhH---HHHHHHHhhhccccccchhhHHHHHHHHHH
Q 043087 325 LLVLLLLFSCIASRMIGTLFVCHRLK-IPRIKAVLLAFVLNLK-GNF---ELILIDVEAGRSATWWSPMIHRMLLIVVVL 399 (754)
Q Consensus 325 ~~~~~~~~~~~~~K~~~~~l~~~~~~-~~~~~~~~lg~~l~~k-G~~---~l~l~~~~~~~~~ii~~~~~~~~lv~~~vl 399 (754)
+.++.+ ...+.--...++.-++.+ -+..- |+..+.- |.- ..+++..--+ .... .+.....+-.++++
T Consensus 226 GIlLGl--~v~~vtG~~~~~~dr~~~g~~g~a----G~A~sstAGnAvatPaavA~adPs-~~~~-a~~ATaqvAaaviv 297 (314)
T TIGR00793 226 GILLGV--SVIILTGIPLILADKFIGGGDGTA----GIAASSSAGAAVATPVLIAEMVPA-FKPV-APAATALVATSVIV 297 (314)
T ss_pred hHHHHH--HHHHHHhHHHHHHHHHhcCCCCch----hhHHHHHHHHhhhhHHHHHHhChh-hhhh-HHHHHHHHHHHHHH
Confidence 222222 222233344555555553 22222 3322222 221 1122222111 1112 22222234456677
Q ss_pred HHHhHHHHHHHHhccc
Q 043087 400 NTLITGPIIASILRRN 415 (754)
Q Consensus 400 s~~i~~pl~~~l~~~~ 415 (754)
|.+++|.++.|.+||.
T Consensus 298 TaiL~Pilta~~~kr~ 313 (314)
T TIGR00793 298 TSLLVPIATVWWSKKV 313 (314)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777788888887764
No 37
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.19 E-value=0.00048 Score=63.51 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=43.7
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+..+.|+..+++.++|+|++|.|++....+. .+.++.+++++++||||-|+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~------~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERL------LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTS------SSHHHHHHHHHHTSSEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCC------CcCCHHHHHHHcCCCCEEEe
Confidence 47789999999999999999999986555443 35668999999999998774
No 38
>PRK15005 universal stress protein F; Provisional
Probab=97.11 E-value=0.001 Score=62.65 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=43.4
Q ss_pred eeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 518 IRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 518 V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
+.++..... .+-.+.|++.|++.++|||++|-|+ ....+.+ ++++..+|++++||||-|.
T Consensus 84 ~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~l------lGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 84 DRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchhee------ecchHHHHHHhCCCCEEEe
Confidence 444444433 3456899999999999999999874 3333333 3447899999999997663
No 39
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.03 E-value=0.1 Score=56.28 Aligned_cols=126 Identities=13% Similarity=0.199 Sum_probs=79.5
Q ss_pred HHHHHHHH-HHHHHHhC-----chHhHHHHHHHhhccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhh
Q 043087 249 LLVLVVSL-AFSIEVLG-----YNSTITGFLLGVFFPRDGKT--TRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKH 320 (754)
Q Consensus 249 vl~~~l~~-~~~a~~~G-----~s~~lGaflaGl~i~~~~~~--~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~ 320 (754)
+++++++. .++.++++ +....++++.|+++.+-.+. ..+..++..+.+.+.-+.+|.+..=|++.+..+.+-
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444 44566655 46678999999999853211 112445566677888899999988899999888763
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh-hhHHHHHHHH
Q 043087 321 YQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLK-GNFELILIDV 376 (754)
Q Consensus 321 ~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~k-G~~~l~l~~~ 376 (754)
....++++.+-..+--+.+.+...|.+|-+...+...+.-+..- |...-+++++
T Consensus 306 --~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 306 --ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 23333344444444556677777888888877776644444432 5555666665
No 40
>PRK15456 universal stress protein UspG; Provisional
Probab=97.03 E-value=0.0016 Score=61.38 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred CceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 516 TRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 516 ~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.++.++...... +-.+.|++.|++.++|||+||-|++. ....+ ++++.++|++++||||-|.
T Consensus 80 ~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~l------lGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 80 DPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHL------LGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-cccee------cCccHHHHHHcCCCCEEEe
Confidence 345566555443 56799999999999999999999854 43333 3447889999999997663
No 41
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.01 E-value=0.69 Score=49.79 Aligned_cols=301 Identities=15% Similarity=0.161 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCh--hHH-HHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHh
Q 043087 20 TFVQISLMLVIAHIFNLIFKPLGQPG--PIS-QMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIG 96 (754)
Q Consensus 20 ~l~~i~lil~~~~~~~~l~~rl~lP~--ivg-~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~G 96 (754)
...|..+.+.++...++++..+++|. +.| -+++|++.+-.....-. + .. +-..+.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~-------P----~~---l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPL-------P----RG---LFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccC-------C----hH---HHHHHHHHHHHHHh
Confidence 46778888888999999999988764 455 66666666632111111 1 11 22223233556889
Q ss_pred hccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCch
Q 043087 97 LEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSEL 176 (754)
Q Consensus 97 le~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~ 176 (754)
..+.++.+.. .++.+.+.+...+++...+...+|++..+. . ++...++ +| -++-.-.....+-+|.| .+.
T Consensus 73 ~~~t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~-~--~~~~Ta~-~g--s~PGgas~m~~iA~d~g---Ad~ 142 (352)
T COG3180 73 ASLTPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFS-I--LPGNTAF-LG--SSPGGASAMVSIAQDYG---ADL 142 (352)
T ss_pred hhcCHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhc-C--CCcchhh-Hh--cCCchHHHHHHHHHHhC---CCh
Confidence 9999988877 444455556556666677777777665542 1 1211111 11 11111112222224443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC------ccchhHHHHHH
Q 043087 177 GRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWNKDSK------YVSNAQVLFLL 250 (754)
Q Consensus 177 g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~~~~~------~~~~~~~~~vl 250 (754)
.+.++ .| ..-.+.+...+-++.+.... .++..+.+ +.....++..+
T Consensus 143 ~~VAl----~Q----------------------~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~ 194 (352)
T COG3180 143 RLVAL----MQ----------------------YLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLI 194 (352)
T ss_pred hHHHH----HH----------------------HHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHH
Confidence 12111 11 11011111111222222211 01111110 01111134445
Q ss_pred HHHHHHHHHHHHhCch--HhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHH
Q 043087 251 VLVVSLAFSIEVLGYN--STITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVL 328 (754)
Q Consensus 251 ~~~l~~~~~a~~~G~s--~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~ 328 (754)
...++.+.+...+++. ..+|+++.|..+.-..... . ++-.-...+-.-+.=..+|.++|-..+..........+
T Consensus 195 ~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~-~---~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 195 LAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGIT-I---QLPAWLLAVAQALIGALIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccccee-e---eCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhcchHH
Confidence 5555556666666663 3578888887776322110 0 01011122333344567899998766654312233344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 329 LLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 329 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
+.++..++.-....++..++.+.++.++.. ..+|-|.-+++....+.+
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC
Confidence 445566666677788888899999988754 358888888777665555
No 42
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=96.82 E-value=0.0045 Score=56.27 Aligned_cols=127 Identities=23% Similarity=0.334 Sum_probs=74.4
Q ss_pred eEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhh
Q 043087 436 RILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFT 513 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~ 513 (754)
||++|+-+..+...++.. +..+.....++.+|..+.... ... +..+ ......++.+ +.+....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~-~~~-----~~~~------~~~~~~~~~l---~~~~~~~ 65 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPS-SAA-----ELAE------LLEEEARALL---EALREAL 65 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCC-cch-----hHHH------HHHHHHHHHH---HHHHHHH
Confidence 578888776666556665 333435566677777554332 110 0000 0001112222 3333333
Q ss_pred ccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEE
Q 043087 514 AQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGV 586 (754)
Q Consensus 514 ~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgI 586 (754)
...++.++....... -.++|++.+++.++|++++|.+++......+ +.+..+++++++||+|-+
T Consensus 66 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~------~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 66 AEAGVKVETVVLEGD---PAEAILEAAEELGADLIVMGSRGRSGLRRLL------LGSVAERVLRHAPCPVLV 129 (130)
T ss_pred hcCCCceEEEEecCC---CHHHHHHHHHHcCCCEEEEcCCCCCccceee------eccHHHHHHhCCCCCEEe
Confidence 344566555544332 2689999999999999999998876543322 334688999999999765
No 43
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.75 E-value=0.064 Score=56.60 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHH
Q 043087 252 LVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLL 331 (754)
Q Consensus 252 ~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~ 331 (754)
+....+.+++.++++..+|-.++|+++.... .+.-..+.....+..+-+.++....|+++|++.+.+. +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~---~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKL---RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHHHH
Confidence 3445678899999999999999999997321 1100011223445677788888899999999998765 33333333
Q ss_pred HHHHHHH-HHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 332 FSCIASR-MIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 332 ~~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
...++.- ++..+...++++.++.+++.+|..+++-. .-++..+..+ .+.. +.+.-..++..++++=.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~-~~~~-~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKE-RGLL-KTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHH-cCcc-cChHHHHHHHHHHHHHHH
Confidence 3333333 34444556778999999999999877543 2344445555 6666 555555444444444433
No 44
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.71 E-value=0.064 Score=63.41 Aligned_cols=116 Identities=17% Similarity=0.103 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHH
Q 043087 247 LFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTR-TLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNIL 325 (754)
Q Consensus 247 ~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~-~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~ 325 (754)
.+.++.+.+...++..+|+++++|=.++|+++.... ++. ...+.+ ..+.++-..++...+|+++|+..++.. ..
T Consensus 11 ~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~-lg~i~~~~~i-~~laelGvv~LlF~iGLEl~~~~l~~~---~~ 85 (621)
T PRK03562 11 LIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG-LRLVTDVESI-LHFAEFGVVLMLFVIGLELDPQRLWKL---RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc-ccCCCCHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHH---HH
Confidence 455666777788899999999999999999996321 111 011222 356678888888899999999988764 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhh
Q 043087 326 LVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKG 367 (754)
Q Consensus 326 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG 367 (754)
.++.+....++.-.+..+..+++++.++..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222222222222333444556778999999999998776543
No 45
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=96.62 E-value=0.019 Score=52.86 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++.+.+|++|.+||+.++.+++++|+.+.
T Consensus 3 Lv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~ 38 (132)
T cd01988 3 LVPVANPNTARDLLELAAALARAQNGEIIPLNVIEV 38 (132)
T ss_pred EEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEec
Confidence 455556788999999999999999999999999974
No 46
>PRK09982 universal stress protein UspD; Provisional
Probab=96.59 E-value=0.0035 Score=59.18 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=37.9
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+-.+.|++.|++.++|||+||-| +...+ ..+ .+.++|+++++|||-|.
T Consensus 89 G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 89 GEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHH-HHHHHHHhcCCCCEEEe
Confidence 366899999999999999999954 33222 123 27889999999997764
No 47
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.58 E-value=0.07 Score=57.40 Aligned_cols=138 Identities=11% Similarity=0.098 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043087 270 TGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRL 349 (754)
Q Consensus 270 GaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~ 349 (754)
.+++.|+.+.| .. +..++.......+++|++-...|.++|++++... .+.-+ ++.+..++......+...|++
T Consensus 178 lplliG~~lgn---l~-~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~--G~~Gi-lL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 178 LPLLVGFILGN---LD-PELRQFLGKAVPVLIPFFAFALGNGIDLGTIITA--GLSGI-LLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHHHh---HH-HhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhc--CCcch-hhhhhHhhccchhhHhHhhee
Confidence 67888888885 22 2234555566677999999999999999888653 12222 222333344455445555777
Q ss_pred CCChH---HHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccc
Q 043087 350 KIPRI---KAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENY 418 (754)
Q Consensus 350 ~~~~~---~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~ 418 (754)
+.... -+...+..-+.-|... ++...-. .+-. .++....+..++++++++.|.+..+++||.+++
T Consensus 251 ~~~~g~~g~a~~ttaG~aic~pAA--vaa~~p~-~~~~-~~~at~~VA~~vivt~il~P~l~~~~~k~~~~~ 318 (326)
T PRK05274 251 GGGNGVAGAAAGSTAGNAVATPAA--VAAADPS-FAPF-APAATAQVAAAVIVTAILAPILTAWWSKRVGKR 318 (326)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHH--HHhhccc-cccc-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54332 2222222111112212 1111111 1222 334444455566678888888888888776543
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=96.49 E-value=0.017 Score=52.35 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=30.9
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
++++-+++..+.++++|.+||+..+.++|++++.++
T Consensus 3 lv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~ 38 (130)
T cd00293 3 LVAVDGSEESERALRWAARLARRLGAELVLLHVVDP 38 (130)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 345556788999999999999999999999999864
No 49
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.47 E-value=1.5 Score=46.71 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhccChhHHHhchhHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHh-----c
Q 043087 85 FISRILFMFLIGLEMDTAYLRTNMDLA---ATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLA-----N 156 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~~~~k~~---~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls-----~ 156 (754)
...+.++||..|+.+..+.+++..|+. +.....++.+--+++++++..+ .. +. -+..|+.+- -
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~-~l------~~--~l~~Gl~ll~~~Pgg 111 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF-PL------PP--ELAVGLLLLGCCPGG 111 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc-CC------CH--HHHHhHHheeeCCCc
Confidence 455567999999999999988755543 3333333333223444444432 21 22 233344332 2
Q ss_pred ccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043087 157 SASPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVL 202 (754)
Q Consensus 157 Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~ 202 (754)
|++ .+...+.. .+ --.+++.+.++.+++.++.-+...+.
T Consensus 112 v~S-~~~t~lAk-----Gn-ValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 112 VAS-NAMTYLAK-----GN-VALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred hhH-HHHHHHhc-----Cc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 44444332 12 24456667777888776655555443
No 50
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=96.42 E-value=0.022 Score=52.27 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=33.1
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeecc
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYAA 637 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~~ 637 (754)
++++-|++++++|+++|.++|++.+.+++++|+.+..
T Consensus 6 lv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 6 LVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPP 42 (140)
T ss_dssp EEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccc
Confidence 5666688999999999999999999999999999753
No 51
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.39 E-value=0.15 Score=59.80 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 248 FLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 248 ~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
.++..++.+..++..+|++.++|=.++|+++.... ++.-........+.++-+.++...+|+++|++.+... . ...
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~-lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~-~--~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFT-PGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV-K--SIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccc-cccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH-h--hHH
Confidence 34566667788888999999999999999997432 1110011122356677777788889999999888653 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhH
Q 043087 328 LLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIH 390 (754)
Q Consensus 328 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~ 390 (754)
....+..++.=++..+.....+++++.+++.+|..++.-.. .++.....+ .|.+ +.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e-~~~l-~s~~G 147 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEE-RQLI-DSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHh-cCcc-cCcch
Confidence 11112222222333444556778999999999987766322 344555556 6766 55433
No 52
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.31 E-value=0.17 Score=59.72 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHH
Q 043087 247 LFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTR-TLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNIL 325 (754)
Q Consensus 247 ~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~-~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~ 325 (754)
.+.++...++..++..+|+++++|=.++|+++.... ++. ...+.+ ..+.++-+.++...+|+++|++.++.. . .
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~-lg~i~~~~~i-~~laelGvv~LLF~iGLel~~~~l~~~-~--~ 85 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWG-LGFISDVDEI-LHFSELGVVFLMFIIGLELNPSKLWQL-R--R 85 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhcccc-ccCCCcHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHH-H--H
Confidence 445555666677888999999999999999997321 110 011223 345677777888889999999988664 2 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhh
Q 043087 326 LVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNL 365 (754)
Q Consensus 326 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~ 365 (754)
.+..+....++.-.+.......++++++..++.+|..++.
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1222212222222222223344568899999888875543
No 53
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.24 E-value=2.7 Score=46.77 Aligned_cols=109 Identities=10% Similarity=0.063 Sum_probs=68.4
Q ss_pred CchHhHHHHHHHhhccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHH-H
Q 043087 264 GYNSTITGFLLGVFFPRDGKT--TRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRM-I 340 (754)
Q Consensus 264 G~s~~lGaflaGl~i~~~~~~--~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~-~ 340 (754)
.+....+|++.|+++.+-.+. ..+..++..+.+.++.+-+|.+..=|++++..+.+. +...++++++..+.-. .
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~---a~Plliil~~q~i~~~l~ 320 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL---AGPIALILLVQVMFMALY 320 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 366778999999999852211 112344566677888899999999999999999875 4444444444444444 4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhh--hhhHHHHHHHH
Q 043087 341 GTLFVCHRLKIPRIKAVLLAFVLNL--KGNFELILIDV 376 (754)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~lg~~l~~--kG~~~l~l~~~ 376 (754)
..++..+.+|-+ .|+..++....- -|...-+++++
T Consensus 321 ~~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm 357 (398)
T TIGR00210 321 AIFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANM 357 (398)
T ss_pred HHHHhHHhccch-HHHHHHhcccccccccchHHHHHHH
Confidence 556666777766 677664332222 24444455544
No 54
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=96.23 E-value=0.013 Score=55.16 Aligned_cols=49 Identities=4% Similarity=0.211 Sum_probs=39.1
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+-++.|++.|++.++|||++|-|+. ..+ .+.++..+|+++|||||-|.
T Consensus 89 G~p~~~I~~~a~~~~~DLIV~Gs~~~--~~~-------~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 89 GDLGQVLVDAIKKYDMDLVVCGHHQD--FWS-------KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred cCHHHHHHHHHHHhCCCEEEEeCccc--HHH-------HHHHHHHHHHhhCCCCEEEe
Confidence 35679999999999999999999852 111 14468899999999997764
No 55
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.22 Score=55.57 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHH
Q 043087 246 VLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNIL 325 (754)
Q Consensus 246 ~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~ 325 (754)
+..+++.+...+++.+.+|+++++|-.++|+++.+..-..-...+...+.+.++=.-++...+|+.+|+..+.+. .-..
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~-~~~~ 89 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKV-GRSV 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHh-chhh
Confidence 455666777778999999999999999999999852211111122233445666666777889999999998875 2121
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 326 LVLLLLFSCIASRMIGT--LFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 326 ~~~~~~~~~~~~K~~~~--~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
........+..=++.. +... .+++++.+++.+|..+..-.. -+.+.+..| .|.. .++..+.++.+.++.=+.
T Consensus 90 -~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e-~~~~-~~~~g~~~l~~~i~~Di~ 163 (397)
T COG0475 90 -GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILME-LGLL-KTREGQLILGALVFDDIA 163 (397)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHH-hccc-cchHHHHHHHHHHHHHHH
Confidence 2222222222222222 2222 589999999999987765332 133344445 6666 666666555555544444
Q ss_pred HHHHHH
Q 043087 404 TGPIIA 409 (754)
Q Consensus 404 ~~pl~~ 409 (754)
+-+++.
T Consensus 164 ~i~lLa 169 (397)
T COG0475 164 AILLLA 169 (397)
T ss_pred HHHHHH
Confidence 434433
No 56
>PRK11175 universal stress protein UspE; Provisional
Probab=96.18 E-value=0.0095 Score=63.87 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=46.0
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCC
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQ 592 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~ 592 (754)
.+..+.|++.|++.++|||+||.|++....+.+.+ ++.++|++++||||-++-.+|+
T Consensus 247 G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llG------S~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 247 GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLG------NTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeec------chHHHHHhcCCCCEEEEcCCCC
Confidence 35578999999999999999999988766554433 4789999999999888755553
No 57
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.13 E-value=0.2 Score=53.60 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHH----HhCchHhHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhH
Q 043087 249 LLVLVVSLAFSIE----VLGYNSTITGFLLGVFFPR-DGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQN 323 (754)
Q Consensus 249 vl~~~l~~~~~a~----~~G~s~~lGaflaGl~i~~-~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~ 323 (754)
.+.+.....++++ ..++++.+=|.+.|+++.| -....+. .++-..+....++.+=-+..|.++++.++.+. .
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~-~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~--G 82 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPAR-FKPGIKFSSKKLLRLGIVLLGFRLSFSDILAL--G 82 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHH-HHhHHHHHHHHHHHHHHHHHCccccHHHHHHh--C
Confidence 3344444444444 3677888889999999996 3333333 23323445568888889999999999998773 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHH--HHHHHHHHHH
Q 043087 324 ILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHR--MLLIVVVLNT 401 (754)
Q Consensus 324 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~--~lv~~~vls~ 401 (754)
+..++..++...+.=.++.++..+.+|++.+.+..++...+.-|.-+.+...-..+ .+- ++-.++ .+.+.-++.+
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~-a~~--~~~a~ava~V~lfg~vam 159 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK-AKE--EDVAYAVATVFLFGTVAM 159 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc-CCC--CceeeeehHHHHHHHHHH
Confidence 32233333333333334444444999999999999999988888777655544444 321 111222 2333444555
Q ss_pred HhHHHHHHHHhcc
Q 043087 402 LITGPIIASILRR 414 (754)
Q Consensus 402 ~i~~pl~~~l~~~ 414 (754)
++-|.+.+++.-.
T Consensus 160 ~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 160 FLYPLLGHALGLS 172 (305)
T ss_pred HHHHHHHHHhCCC
Confidence 5566666655443
No 58
>PRK09982 universal stress protein UspD; Provisional
Probab=96.00 E-value=0.035 Score=52.37 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=32.4
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|+++.+.|+++|.++|+.++++++++|++++
T Consensus 7 LvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~ 42 (142)
T PRK09982 7 GVAISGNEEDALLVNKALELARHNDAHLTLIHIDDG 42 (142)
T ss_pred EEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccC
Confidence 667778889999999999999999999999999864
No 59
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=95.95 E-value=0.076 Score=50.00 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=32.3
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
++.+-|.+..+.|+++|.++++..+.+++++|++++
T Consensus 3 LVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 3 AVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPP 38 (146)
T ss_pred EEEecCccccHHHHHHHHHhccCCCCcEEEEEeccC
Confidence 566778899999999999999999999999999864
No 60
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.91 E-value=0.19 Score=58.89 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHH--HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHH
Q 043087 248 FLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRT--LFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNIL 325 (754)
Q Consensus 248 ~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~--~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~ 325 (754)
+++++...+..+++.+|++.+++-.++|+++.... .+.- ......+.+..+.+++.....|+++|+..+... +.
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~-lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~---~~ 88 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDG-LGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPA---LG 88 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccc-cCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHH---HH
Confidence 44555556677888899999999999999998432 1100 011233567889999999999999999998775 44
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhcCCChHHHHHHHHHhhhhhh
Q 043087 326 LVLLLLFSCIASRMIG-TLFVCHRLKIPRIKAVLLAFVLNLKGN 368 (754)
Q Consensus 326 ~~~~~~~~~~~~K~~~-~~l~~~~~~~~~~~~~~lg~~l~~kG~ 368 (754)
....+..+..+.-.+. .+...+++++++.+++.+|..+++-..
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 4443433333333333 444556789999999999987776543
No 61
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.81 E-value=0.13 Score=54.69 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=82.7
Q ss_pred HHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHH
Q 043087 257 AFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIA 336 (754)
Q Consensus 257 ~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~ 336 (754)
....+..|+++..=|.+.|+++....+.. +...+=..+....++.+=-+..|++++++++.+. .+. .+.+.+..+.
T Consensus 29 ~~~~~~~~l~al~lAIllGi~l~~l~~~~-~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~--G~~-~v~~~~~~l~ 104 (334)
T COG2855 29 FFFSIHLGLSALTLAILLGILLGILPQIP-AQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADV--GGS-GVLIIAITLS 104 (334)
T ss_pred hHHhhhcCchHHHHHHHHHHHHhccccch-hhhccchhhhHHHHHHHHHHHHcceeeHHHHHHc--Ccc-HHHHHHHHHH
Confidence 34555677778899999999998543333 3333333566778888889999999999998763 222 3334455556
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043087 337 SRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILID 375 (754)
Q Consensus 337 ~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~ 375 (754)
.-++.+++..+++|+|++.++.+|..-+.-|.-+++...
T Consensus 105 ~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~ 143 (334)
T COG2855 105 STFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATA 143 (334)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhC
Confidence 667777777889999999999999988888876655443
No 62
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.68 E-value=0.48 Score=51.26 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHH-----hCchHhHHHHHHHhhccCCC--CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhh
Q 043087 250 LVLVVSLAFSIEV-----LGYNSTITGFLLGVFFPRDG--KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQ 322 (754)
Q Consensus 250 l~~~l~~~~~a~~-----~G~s~~lGaflaGl~i~~~~--~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~ 322 (754)
+.+++.+.++++. .++++.+=|.+.|+++.|.. +..+. .++=.++....++-+=-+..|.++++.++.+.
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~-~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~-- 87 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEE-KKRGVLFAKPFLLRIGITLYGFRLTFPYIADV-- 87 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhh-ccchHHHHHHHHHHHHHHHHCccccHHHHHHh--
Confidence 3344444444443 47888888999999998621 11111 12222445567777788899999999998763
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhh-HH--HHHHHHH
Q 043087 323 NILLVLLLLFSCIASRMI-GTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMI-HR--MLLIVVV 398 (754)
Q Consensus 323 ~~~~~~~~~~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~-~~--~lv~~~v 398 (754)
.+. .+.+.+.....-+. +.++..+.+|++++.+..+|..-+.-|.-+++-..-..+ .+ ++|. ++ .+++.-.
T Consensus 88 G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~-A~---~~~~a~ava~V~lfgt 162 (335)
T TIGR00698 88 GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK-AE---KEKVSVAIAIVVIFGT 162 (335)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC-CC---ccceeeeehHHHHHHH
Confidence 232 22333333334444 445555899999999999999888888777655444333 22 2222 22 2333344
Q ss_pred HHHHhHHHHHHHH
Q 043087 399 LNTLITGPIIASI 411 (754)
Q Consensus 399 ls~~i~~pl~~~l 411 (754)
+.+++-|++.+++
T Consensus 163 ~am~l~P~l~~~l 175 (335)
T TIGR00698 163 TGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 5555566666544
No 63
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.49 E-value=4.2 Score=43.21 Aligned_cols=44 Identities=2% Similarity=0.089 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh-hhHHHHHHHH
Q 043087 333 SCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLK-GNFELILIDV 376 (754)
Q Consensus 333 ~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~k-G~~~l~l~~~ 376 (754)
+..+.-+...++.++.+|.+.+|+..+++-.+.| +...+.++..
T Consensus 203 ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~~ 247 (286)
T TIGR00841 203 LLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQL 247 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHHH
Confidence 3334445566667788899988888877765555 4455555543
No 64
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.44 E-value=4.8 Score=43.49 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHhCc--hHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhH
Q 043087 246 VLFLLVLVVSLAFSIEVLGY--NSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQN 323 (754)
Q Consensus 246 ~~~vl~~~l~~~~~a~~~G~--s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~ 323 (754)
+...+..+...+++.+.+++ ...+|+++.+.++.-.+...-. . -.....+-.-+.=.++|.+++...+......
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~-~---P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFS-L---PPWLVNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCC-C---CHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 34455566677778888877 4467888877776622100000 0 0122233333445678999998776654233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 324 ILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 324 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
+...+...+..+..-.+..++..++.++|+.+++. .+.|-|.-++.+.....+ .+.- --..++.+=+..+ .++
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~-~d~~-~V~~~q~~Rl~~v--~~~ 305 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALG-ADVA-FVAAHQVVRLLFV--LLL 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcC-CChH-HHHHHHHHHHHHH--HHH
Confidence 44555556666677788888899999999988754 368999999888776666 3321 1112222211122 224
Q ss_pred HHHHHHHHhcc
Q 043087 404 TGPIIASILRR 414 (754)
Q Consensus 404 ~~pl~~~l~~~ 414 (754)
.|++.+++.|+
T Consensus 306 ~p~~~r~~~r~ 316 (318)
T PF05145_consen 306 APFIARWLRRR 316 (318)
T ss_pred HHHHHHHHHHh
Confidence 57777766553
No 65
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.40 E-value=4.7 Score=43.17 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=53.9
Q ss_pred ccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHH
Q 043087 40 PLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGL 119 (754)
Q Consensus 40 rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~ 119 (754)
..+++.++--|+.|+++|+..++.-+.++ ++.....+.+-.+|+ -+.|.++++.++.+.+.+.+.+....+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~-----~Gi~~~~k~~Lr~gI----VLlG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFK-----PGIKFSSKKLLRLGI----VLLGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHH-----hHHHHHHHHHHHHHH----HHHCccccHHHHHHhCccHHHHHHHHH
Confidence 46788889999999999973334322211 111111123444442 356999999999999998888777777
Q ss_pred HHHHHHHHHHH
Q 043087 120 LVSFVFGIILT 130 (754)
Q Consensus 120 ~l~~~~~~~~~ 130 (754)
..++.++..++
T Consensus 94 ~~~~~~~~~lg 104 (305)
T PF03601_consen 94 ILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777666655
No 66
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.39 E-value=0.17 Score=50.26 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccCh-----hHHHhchhHHHHHHHHHHHH
Q 043087 47 ISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDT-----AYLRTNMDLAATIASGGLLV 121 (754)
Q Consensus 47 vg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~-----~~l~~~~k~~~~i~~~~~~l 121 (754)
++.+++|+++|-......+. .+......+.+++|.+|+++-- +++++.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~~~~-------------~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSL-------------IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhcccccc-------------cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888643222110 0224455566799999999844 45677778998888888777
Q ss_pred HHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 122 SFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFV 199 (754)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~ 199 (754)
+++.+.+.+.++ +. +...++.++.-+. =+.....+++|. .+.+.|.++.=+-++-++.++++.-++.
T Consensus 69 Sllgg~l~~~ll-~~------~~~~~lav~sG~G--wYSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLL-GL------SLKESLAVASGFG--WYSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHh-cC------CHHHHHHHHccCc--HHHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666543 54 4444444443321 111222334443 3557888888887788877776654443
No 67
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.38 E-value=0.065 Score=48.86 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=31.9
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|++.+++|+++|.++|++.+.+++++++.++
T Consensus 3 lv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~ 38 (124)
T cd01987 3 LVCISGGPNAERLIRRAARLADRLKAPWYVVYVETP 38 (124)
T ss_pred EEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecC
Confidence 466667888999999999999999999999999864
No 68
>PRK10116 universal stress protein UspC; Provisional
Probab=95.26 E-value=0.062 Score=50.31 Aligned_cols=51 Identities=8% Similarity=0.279 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 529 FANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 529 ~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
..+-.+.|++.+++.++|||++|=|++...+.. .++..+|++++||||-|+
T Consensus 87 ~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--------~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 87 YGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--------SCSAKRVIASSEVDVLLV 137 (142)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--------HHHHHHHHhcCCCCEEEE
Confidence 356689999999999999999999876543321 135789999999998775
No 69
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.20 E-value=5.8 Score=43.06 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh-hhHHHHHHHHhhh
Q 043087 332 FSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLK-GNFELILIDVEAG 379 (754)
Q Consensus 332 ~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~k-G~~~l~l~~~~~~ 379 (754)
++..+.-+...+..++.+|.+.+|+..+.+--+.| +..++.++..-++
T Consensus 253 ~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~ 301 (328)
T TIGR00832 253 LIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFG 301 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCC
Confidence 34444556667777888999999998888766655 4555555544333
No 70
>PRK10116 universal stress protein UspC; Provisional
Probab=95.11 E-value=0.12 Score=48.41 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.6
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
++..-+.++...||++|.++|+..+++++++++++.
T Consensus 7 Lv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~ 42 (142)
T PRK10116 7 LVAVAVTPESQQLLAKAVSIARPVNGKISLITLASD 42 (142)
T ss_pred EEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccC
Confidence 455557788899999999999999999999999853
No 71
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.09 E-value=0.62 Score=51.73 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred ceeEEEEeecCCCcccchhhhcccCCCCcceeeeeeccccccchhhhhhhhccCCC--------CCC---CCcccCCCch
Q 043087 434 EFRILSCAYEPRHASGQLVLSASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGG--------QYS---DEEDYGGNDV 502 (754)
Q Consensus 434 e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~i 502 (754)
+.|+++||+|+.+..-.-.|. .++.|+.+.+.+.+|.... .+..+++||.++.+ .++ ...+...+ .
T Consensus 240 k~HvII~G~g~lg~~v~~~L~-~~g~~vvVId~d~~~~~~~-~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~-N 316 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLR-QRGQAVTVIVPLGLEHRLP-DDADLIPGDSSDSAVLKKAGAARARAILALRDNDAD-N 316 (393)
T ss_pred CCeEEEECCChHHHHHHHHHH-HCCCCEEEEECchhhhhcc-CCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHH-H
Confidence 679999999998864332231 1235666655554443332 45667888876642 111 00000111 1
Q ss_pred hhHhHHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecC
Q 043087 503 LEINEAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPF 552 (754)
Q Consensus 503 l~i~~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpf 552 (754)
+.+....|+..++.++.++.. + ++=.+..++.++|.++.|-
T Consensus 317 l~ivL~ar~l~p~~kIIa~v~------~---~~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAVN------D---SKNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEEC------C---HHHHHHHHhcCCCEEECHH
Confidence 222355666666555544333 1 2334566778999999886
No 72
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.01 E-value=0.66 Score=55.28 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHHhhhhhhH
Q 043087 296 IHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR--LKIPRIKAVLLAFVLNLKGNF 369 (754)
Q Consensus 296 ~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~l~~kG~~ 369 (754)
+..+.+++-....|++++...+... |..+..+++..+..-++++.+.+++ .++++..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~---wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKH---WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 6678888888999999999999876 6655555555555555555555553 499999999999999987654
No 73
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.91 E-value=0.73 Score=56.39 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchH--H--------HHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043087 250 LVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTR--T--------LFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLK 319 (754)
Q Consensus 250 l~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~--~--------~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~ 319 (754)
+++.-+..++...+|++.++|=.++|+++.... ++. . ........+..+-+-+|...+|+++|+..+..
T Consensus 52 l~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~-lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~ 130 (832)
T PLN03159 52 VVTTRLLVFILKPFRQPRVISEILGGVILGPSV-LGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRR 130 (832)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhh-hCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHh
Confidence 333344455556667777777777777765210 110 0 01112345667777778889999999998865
Q ss_pred h
Q 043087 320 H 320 (754)
Q Consensus 320 ~ 320 (754)
.
T Consensus 131 ~ 131 (832)
T PLN03159 131 T 131 (832)
T ss_pred c
Confidence 3
No 74
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=94.71 E-value=0.19 Score=54.89 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=32.7
Q ss_pred EEEeccCcchHHHHHHHHHHhhCC--CEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNS--NINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~--~v~ltv~r~~~~ 636 (754)
++++-|.+..+.|+++|..+|+.. +++++++|+++.
T Consensus 9 LVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~ 46 (357)
T PRK12652 9 LVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASG 46 (357)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Confidence 788889999999999999999884 699999999864
No 75
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=94.59 E-value=9.2 Score=42.38 Aligned_cols=251 Identities=13% Similarity=0.133 Sum_probs=133.2
Q ss_pred hccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHH-----hcccHHHHHHHHHhcCc
Q 043087 97 LEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILL-----ANSASPVVMRLIDELKF 171 (754)
Q Consensus 97 le~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~l-----s~Ts~~vv~~lL~e~~~ 171 (754)
|.||.+.+.|...|-+..-+.+.+..++++.+++.. ++. + .....+.+.+=. ..-+.|...-.=+-.+.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l-~G~----~-~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGML-FGY----S-FKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC----C-HHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 589999999988888877777777777777777763 354 1 111122222111 11122222111111232
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------c-----h---h-----------HHHHHHHHHHHHHHHHH
Q 043087 172 NTSELGRLASTTSLINEVGCIIYYSSFVTVLSSK-------N-----F---A-----------NAIYSIILTALLIIINM 225 (754)
Q Consensus 172 l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~-------~-----~---~-----------~~~l~~~~~~~~~~v~r 225 (754)
-..++-..++.+.++.++++++.-+++--+.... . - . .....-++..+.++...
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G 262 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILG 262 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3334444456666777777776655554432110 0 0 0 00111122223333333
Q ss_pred HHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 043087 226 YLAKWFARWNKDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYF 305 (754)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF 305 (754)
.+...+. . .+ .+...++.. .+...+| ++|+ .-++-..+..+++..-+.+...
T Consensus 263 ~ll~~~i----~---ih-~~a~mIi~~-----~i~K~~~------------lvP~---~~e~~a~~~~~f~~~~lt~~lL 314 (414)
T PF03390_consen 263 VLLSKLI----G---IH-AYAWMIILV-----AIVKAFG------------LVPE---SLEEGAKQWYKFFSKNLTWPLL 314 (414)
T ss_pred HHHHHhc----C---Cc-HHHHHHHHH-----HHHHHhC------------cCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 0 11 111111111 1222223 2342 2334455666677777888888
Q ss_pred HHhhcc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHhhhh-hhHHHHHHHHhhhccc
Q 043087 306 GYMGFQ-FDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPR-IKAVLLAFVLNLK-GNFELILIDVEAGRSA 382 (754)
Q Consensus 306 ~~~G~~-~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~-~~~~~lg~~l~~k-G~~~l~l~~~~~~~~~ 382 (754)
+.+|+. +|++++.+. -++..+ ++++...++-.++.++..++.|+-+ ..++..|+.++.+ |.=|+++.+.+.+ .+
T Consensus 315 vgiGv~~~~l~~l~~a-~t~~~v-v~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R-M~ 391 (414)
T PF03390_consen 315 VGIGVAYTDLNDLIAA-FTPQYV-VIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR-ME 391 (414)
T ss_pred HHHHhhhCcHHHHHHH-hCHHHH-HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh-cc
Confidence 899999 999988776 455543 3445556677788888899999655 4556666677766 5556777766666 66
Q ss_pred cc
Q 043087 383 TW 384 (754)
Q Consensus 383 ii 384 (754)
++
T Consensus 392 Lm 393 (414)
T PF03390_consen 392 LM 393 (414)
T ss_pred cc
Confidence 65
No 76
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=94.49 E-value=0.16 Score=47.74 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 533 YEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 533 ~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+.|+..+.+..+|+|++|-++++..++- .++++.++|++++||||-+.
T Consensus 102 ~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 102 AEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEE
Confidence 58999999999999999999987776653 34558999999999997765
No 77
>PRK15005 universal stress protein F; Provisional
Probab=94.47 E-value=0.75 Score=42.98 Aligned_cols=36 Identities=3% Similarity=0.006 Sum_probs=28.7
Q ss_pred EEEeccCcc--hHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGAD--DREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~d--dreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.=|.++ .+.|+++|.++|+..+.+++++|+++.
T Consensus 6 Lv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~ 43 (144)
T PRK15005 6 LVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPS 43 (144)
T ss_pred EEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEcc
Confidence 344444454 379999999999999999999999964
No 78
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.45 E-value=2.3 Score=42.14 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccChhHHHhchhHHHHH--H-HHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHH
Q 043087 87 SRILFMFLIGLEMDTAYLRTNMDLAATI--A-SGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVV 162 (754)
Q Consensus 87 gli~llF~~Gle~d~~~l~~~~k~~~~i--~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv 162 (754)
.+.+.||..|+++|++++++..|+...+ + +.++++.=++++++++.+++. +...+..+. .+.++++ ..
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~------~~~~~~Gl~l~~~~P~~--~~ 74 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL------SPALALGLLLVAACPGG--PA 74 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--------HHHHHHHHHHHHS-B---TH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHhcCCcH--HH
Confidence 3456999999999999999877665433 2 233333223345454323332 222122211 2223333 34
Q ss_pred HHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043087 163 MRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTVL 202 (754)
Q Consensus 163 ~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~ 202 (754)
+...+.+. +.+. .++.+...++.+.+..++-+...+.
T Consensus 75 s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 75 SNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 44444432 2222 3555666677777766655555443
No 79
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.41 E-value=5 Score=43.42 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=74.1
Q ss_pred CchHhHHHHHHHhhccCCCCchHHHHH---HHHHHHHHHHHHHHHHHhhcc-cchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043087 264 GYNSTITGFLLGVFFPRDGKTTRTLFK---KLAYSIHNFVLPIYFGYMGFQ-FDIRDLLKHYQNILLVLLLLFSCIASRM 339 (754)
Q Consensus 264 G~s~~lGaflaGl~i~~~~~~~~~~~e---k~~~~~~~~f~plFF~~~G~~-~dl~~l~~~~~~~~~~~~~~~~~~~~K~ 339 (754)
++|+..-..++|.++..-+-..++..+ +...++..-+.+..++.+|+. +|++++.+. -+|. .+++++...++=.
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a-~t~~-~vviiv~~Vlg~i 280 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAA-LSWQ-FVVICLSVVVAMI 280 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHH-hchh-HhhhHHHHHHHHH
Confidence 567777777888777643322233333 333345555556566667877 899888775 3343 3444556666777
Q ss_pred HHHHHHHhhcCCC-hHHHHHHHHHhhhh-hhHHHHHHHHhhhccccc
Q 043087 340 IGTLFVCHRLKIP-RIKAVLLAFVLNLK-GNFELILIDVEAGRSATW 384 (754)
Q Consensus 340 ~~~~l~~~~~~~~-~~~~~~lg~~l~~k-G~~~l~l~~~~~~~~~ii 384 (754)
++.++.+++.|+- ...++..|+.++.+ |.=|+++.+.+.+ .+++
T Consensus 281 i~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~R-M~Lm 326 (347)
T TIGR00783 281 LGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNR-MNLI 326 (347)
T ss_pred HHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhh-cccc
Confidence 8888999999964 45555567777766 4556666666655 6655
No 80
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.33 E-value=9.4 Score=41.41 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=52.1
Q ss_pred HhccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHH
Q 043087 38 FKPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASG 117 (754)
Q Consensus 38 ~~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~ 117 (754)
.++.+++.++--|+.|+++|+......++ .+. .+..-..+.+-.+|++ +.|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~-~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKK-RGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hcc-chHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 34568999999999999999854211111 000 1111111223444422 569999999999999988776666
Q ss_pred HHHHHHHHHHHHH
Q 043087 118 GLLVSFVFGIILT 130 (754)
Q Consensus 118 ~~~l~~~~~~~~~ 130 (754)
.+..++.++..++
T Consensus 98 ~v~~~~~~~~~~g 110 (335)
T TIGR00698 98 ILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555444
No 81
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=94.27 E-value=0.23 Score=46.68 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=30.3
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEee
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFL 634 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~ 634 (754)
+++.=|.+..+.||++|..+|+..+.+++++|+.
T Consensus 7 LvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~ 40 (144)
T PRK15118 7 LIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVD 40 (144)
T ss_pred EEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 5666688889999999999999999999999984
No 82
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.27 E-value=0.67 Score=53.75 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 248 FLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 248 ~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
..++.+.+...+++.++++..++-.++|+++... +.... .+-..+.+..+++|......|+++|...+..+ +..+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~-~~~~~-~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~---~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLA-GLLPE-VPLDREIVLFLFLPPLLFEAAMNTDLRELREN---FRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc-cccCC-CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHH
Confidence 3444555556778888888888888888888732 11110 00011234558899999999999999998875 4444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCChHHHHHHHHHhhhhhhHHH
Q 043087 328 LLLLFSCIASRMIG-TLFVCHRLKIPRIKAVLLAFVLNLKGNFEL 371 (754)
Q Consensus 328 ~~~~~~~~~~K~~~-~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l 371 (754)
..+.+...+.-.+. .+...+..++|+..++.+|.++++-..+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 44444333333333 333334679999999999999998876553
No 83
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.25 E-value=2.1 Score=41.58 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=70.9
Q ss_pred hccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHH---HhchhHHHHHH
Q 043087 39 KPLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYL---RTNMDLAATIA 115 (754)
Q Consensus 39 ~rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l---~~~~k~~~~i~ 115 (754)
+++++-...|-+++|+++|-. +...+ .+.+ ....+.+.++|+.+|++.+|++--++-+ ++.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~---~~~~---~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGP---IFLP---ISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccC---CCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566677777899999999852 22211 1111 2233457889999999999999887654 44555555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHHHHh
Q 043087 116 SGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRLIDE 168 (754)
Q Consensus 116 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~lL~e 168 (754)
+.-..+|.+++..+++++++. ++ ....| .+=+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~l------~~--~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFKL------NP--GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcCC------CH--HHHHHHHHccccCcHHHHHHHHh
Confidence 666667777777777655554 22 22222 33456777777666544
No 84
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.46 E-value=1.5 Score=42.20 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccCCC--hhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 043087 27 MLVIAHIFNLIFKPLGQP--GPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYL 104 (754)
Q Consensus 27 il~~~~~~~~l~~rl~lP--~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l 104 (754)
.+.++.+.+.+++++|+| .++|.++++.++.-. +..+. -+| .. +..++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~~---~~P-----~~---~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLEI---TLP-----PW---LLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCccC---CCC-----HH---HHHHHHHHHHHHHHccCCHHHH
Confidence 455777888999999998 666666666665522 21110 111 11 2233334477899999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043087 105 RTNMDLAATIASGGLLVSFVFGIILTYISRFV 136 (754)
Q Consensus 105 ~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~ 136 (754)
++..|. +..++....+..+.+.+.++++..+
T Consensus 70 ~~~~~~-~~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 70 AELKRL-WPAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985544 4445555666666666666666544
No 85
>PRK15456 universal stress protein UspG; Provisional
Probab=93.44 E-value=0.78 Score=42.94 Aligned_cols=35 Identities=9% Similarity=-0.031 Sum_probs=27.6
Q ss_pred EEEeccC--cchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGG--ADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG--~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.=|+ +.++.|+++|.++|+.. .+++++|++++
T Consensus 6 Lv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~ 42 (142)
T PRK15456 6 IMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPG 42 (142)
T ss_pred EEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecC
Confidence 4455555 36999999999999875 58999999864
No 86
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.18 E-value=1.4 Score=42.09 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred cCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchh----HHHHHHH
Q 043087 41 LGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMD----LAATIAS 116 (754)
Q Consensus 41 l~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k----~~~~i~~ 116 (754)
+++-...|-+++|+++|- ++...+..+-.|. .....+.++|+.+|++.+|++--++-+....+ ....++.
T Consensus 19 ~~LG~~~G~L~vgL~~G~--~~~~~p~~~~~p~----~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~ 92 (154)
T TIGR01625 19 IKLGNAGGVLFVGLLLGH--FGATGPLTWYIPF----SANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGA 92 (154)
T ss_pred eEecccHHHHHHHHHHHh--ccccCCcceecCh----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 334447789999999986 4544432222222 23345788999999999999998866544322 2223333
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHHHHhc
Q 043087 117 GGLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRLIDEL 169 (754)
Q Consensus 117 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~lL~e~ 169 (754)
.-.++|.+++..++.++++. +. ....| ++=+.|++|.+.-..+..
T Consensus 93 ~v~~~~~~~~~~~~~~~~~~------~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 93 LITVVPTLLVAVALIKLLRI------NY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHHHhCC------CH--HHHHHHHhccccChHHHHHHHHHh
Confidence 33445555555555545444 22 22233 345677777777665543
No 87
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.04 E-value=4.4 Score=38.89 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCch--HhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHH
Q 043087 250 LVLVVSLAFSIEVLGYN--STITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLV 327 (754)
Q Consensus 250 l~~~l~~~~~a~~~G~s--~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~ 327 (754)
+.+....+++.+.+|+. ..+|+.+++.++.-.+... -+.-.....+-.-+.=..+|.+++...+.+..+.+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~----~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE----ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc----CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455556677788875 6788888887776322110 00111233334444556889999987776542335555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043087 328 LLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 328 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~ 379 (754)
+...+..++.-.+..++..+..++|+.+++ ++ ..|-|.-++.......+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHhC
Confidence 566666777778888899999999999885 33 58888888777655443
No 88
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.60 E-value=1.5 Score=48.38 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH-HhhhhhhH-HHHH
Q 043087 296 IHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAF-VLNLKGNF-ELIL 373 (754)
Q Consensus 296 ~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~-~l~~kG~~-~l~l 373 (754)
..++|+-.||..+|+..++..+.+..........+.........+.....+..++.++.-.+..|. .+. .|.= +.++
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~-GGhGTAaa~ 143 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFT-GGHGTAAAF 143 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhcccccc-CCccHHHHH
Confidence 567788899999999999887765422222222233334445655555566777888776655442 222 1222 2333
Q ss_pred HHHhhhcc-ccccchhhHHH--HHHHHHHHHHhHHHHHHHHhcccc
Q 043087 374 IDVEAGRS-ATWWSPMIHRM--LLIVVVLNTLITGPIIASILRRNE 416 (754)
Q Consensus 374 ~~~~~~~~-~ii~~~~~~~~--lv~~~vls~~i~~pl~~~l~~~~~ 416 (754)
.....+ . |.- +.....+ .++-.+...+++.|+.+++.||.+
T Consensus 144 g~~fe~-~~G~~-~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 144 GPTFEE-LYGWE-GATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHH-hcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334334 4 543 3333322 233445556788999999887654
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.58 E-value=0.94 Score=52.89 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=55.0
Q ss_pred hHhHHHHHHHhhccCCC---CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Q 043087 266 NSTITGFLLGVFFPRDG---KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHY-QNILLVLLLLFSCIASRMIG 341 (754)
Q Consensus 266 s~~lGaflaGl~i~~~~---~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~-~~~~~~~~~~~~~~~~K~~~ 341 (754)
....|++++|+++.+-. |...++-+.....++++.+-+|...+|++--...+..-. ..|.+.+.- ++..+.=.+.
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g-~~~~~~~~~~ 494 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG-IVVTILPLII 494 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 45579999999998532 222223344455688999999999999998755443210 223333322 2333333344
Q ss_pred HHHHH-hhcCCChHHHHHHHH
Q 043087 342 TLFVC-HRLKIPRIKAVLLAF 361 (754)
Q Consensus 342 ~~l~~-~~~~~~~~~~~~lg~ 361 (754)
+++.+ +.+|++.. ..+|.
T Consensus 495 ~~~~~~~~~~~~~~--~~~G~ 513 (562)
T TIGR03802 495 TMLIGKYVLKYDPA--LLLGA 513 (562)
T ss_pred HHHHHHHHhCCCHH--HHHHH
Confidence 55555 67898866 44454
No 90
>PRK03818 putative transporter; Validated
Probab=92.57 E-value=4.4 Score=47.25 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHh---chhHHHHHHHHHHHHH
Q 043087 46 PISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRT---NMDLAATIASGGLLVS 122 (754)
Q Consensus 46 ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~---~~k~~~~i~~~~~~l~ 122 (754)
..|-+++|+++|-.. . .+..-.| .....++..+|+.+|+|.+|++--++-+.. .+.+...+++.-.+++
T Consensus 33 ~~g~L~~gl~~G~~~--~--~~~~~~~----~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~ 104 (552)
T PRK03818 33 IGGVLFGGIIVGHFV--S--QFGLTLD----SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG 104 (552)
T ss_pred cHHHHHHHHHHhccc--c--ccCcccC----hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 378899999988521 0 1111111 233345788999999999999999876644 3444445555555556
Q ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHHHH
Q 043087 123 FVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRLID 167 (754)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~lL~ 167 (754)
.++++.+. +++++ ++ ....| ++=+.|++|.+....+
T Consensus 105 ~~~~~~~~-~~~~~------~~--~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 105 GLVTAILH-KLFGI------PL--PVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHHHHHHH-HHhCC------CH--HHHHHHhhccccccHHHHHHHH
Confidence 66655543 34444 22 12222 3345677777766554
No 91
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=90.78 E-value=8.3 Score=45.12 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=71.6
Q ss_pred ccCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHH---HhchhHHHHHHH
Q 043087 40 PLGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYL---RTNMDLAATIAS 116 (754)
Q Consensus 40 rl~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l---~~~~k~~~~i~~ 116 (754)
++.+-...|-+++|+++|- ++...+.-+-.|+ ....++.++|+.+|++.+|++--++-+ ++.+.+...+|.
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~~p~----~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGNIPS----SASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcceecCH----HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3445566788999999986 3333332122332 223457889999999999999887654 454555555666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHHHHh
Q 043087 117 GGLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRLIDE 168 (754)
Q Consensus 117 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~lL~e 168 (754)
.-.++|.++++.+++++++. ++ ....| ++=+.|++|.+.-..+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~------~~--~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY------DP--ALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC------CH--HHHHHHhhccCCCcHHHHHHHHh
Confidence 66667777777777555555 22 23333 34567787777766543
No 92
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.03 E-value=31 Score=37.19 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhhhhhH-HHHHHHHhhh
Q 043087 338 RMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNF-ELILIDVEAG 379 (754)
Q Consensus 338 K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~-~l~l~~~~~~ 379 (754)
=+..++..++.++++.+|...+-+.-++|... .+-+++..+.
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~ 281 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFP 281 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcc
Confidence 33556777888899999998887766777543 2334444443
No 93
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=89.95 E-value=6.8 Score=44.22 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCC--CCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHH
Q 043087 247 LFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRD--GKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNI 324 (754)
Q Consensus 247 ~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~--~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~ 324 (754)
.+++.+...++.+++.+..+...-+.+.|++.... .+...+ .+-..+.+..+++|+-....|+++|...+.++ |
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~-~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~---~ 87 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD-LELDPELFLVLFLAILLFAGGLELDLRELRRV---W 87 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc-ccCChHHHHHHHHHHHHHHhHhcCCHHHHHHh---H
Confidence 34445555666666666666655555555554411 011111 11111233378888888899999999999886 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHH
Q 043087 325 LLVLLLLFSCIASRMIGTLFVCHRL--KIPRIKAVLLAFVLNLKGNFEL 371 (754)
Q Consensus 325 ~~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~l~~kG~~~l 371 (754)
..+..+.....+...++.....++. ++|+..++.+|..+++-.-+..
T Consensus 88 ~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 88 RSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 5555555556666666665555555 8999999999999988766654
No 94
>PRK04972 putative transporter; Provisional
Probab=89.50 E-value=4.9 Score=46.93 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred CchHhHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh-hHHHHHHHHHHHHHHHHH
Q 043087 264 GYNSTITGFLLGVFFPR---DGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHY-QNILLVLLLLFSCIASRM 339 (754)
Q Consensus 264 G~s~~lGaflaGl~i~~---~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~-~~~~~~~~~~~~~~~~K~ 339 (754)
++...-|+.++|++++. ..|....+-+.-...++++=+-+|...+|++--...+..-. ..|.+.+.-+++.++.-+
T Consensus 409 ~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~ 488 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVV 488 (558)
T ss_pred eccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445689999999985 23333333444456788888999999999987644332210 234443333344444444
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhhhh
Q 043087 340 IGTLFVCHRLKIPRIKAVLLAFVLNLKGN 368 (754)
Q Consensus 340 ~~~~l~~~~~~~~~~~~~~lg~~l~~kG~ 368 (754)
++.++..+.+|+++. ..+|.+-..+..
T Consensus 489 ~~~~~~~~~~k~~~~--~~~G~~aG~~t~ 515 (558)
T PRK04972 489 ICFLFGAYVLRMNRA--LLFGAIMGARTC 515 (558)
T ss_pred HHHHHHHHHHcCCHH--HHHHHHhCCCCC
Confidence 444455577888877 445554444433
No 95
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.34 E-value=40 Score=36.29 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred hHhHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043087 266 NSTITGFLLGVFFPRDG-KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLF 344 (754)
Q Consensus 266 s~~lGaflaGl~i~~~~-~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l 344 (754)
+|.+=|.++|+++.--+ +.. ...++.-+.+.+...|+-...+|+.++...+... +.......++-++.-++.++.
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~---~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMP-GLILKSISILSGATTPMALFSLGLALSPRKIKLG---VRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccC---hHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555211 112 3345555678889999999999999987766543 444444455566666666677
Q ss_pred HHhhcCCChHHHHHHHHHh--hhhhhHHHHHHHHhhhccccccchhhHH-HHHHHHHHHHHhHHHHH
Q 043087 345 VCHRLKIPRIKAVLLAFVL--NLKGNFELILIDVEAGRSATWWSPMIHR-MLLIVVVLNTLITGPII 408 (754)
Q Consensus 345 ~~~~~~~~~~~~~~lg~~l--~~kG~~~l~l~~~~~~~~~ii~~~~~~~-~lv~~~vls~~i~~pl~ 408 (754)
....++.+..... ..+++ .|-+....++ +.+ .|. +++..+ .+.++++++. ++-|+.
T Consensus 258 ~~~~~~l~~~~~~-~~vl~aa~P~a~~~~i~---A~~-y~~--~~~~aa~~v~~sT~ls~-~tlp~~ 316 (321)
T TIGR00946 258 ISKLIGLRGLELS-VAILQAALPGGAVAAVL---ATE-YEV--DVELASTAVTLSTVLSL-ISLPLF 316 (321)
T ss_pred HHHHhCCChHHHH-HHHHHHcCChhhHHHHH---HHH-hCC--CHHHHHHHHHHHHHHHH-HHHHHH
Confidence 7777777654432 22222 2334443333 334 454 444444 4445555544 444443
No 96
>COG3329 Predicted permease [General function prediction only]
Probab=88.30 E-value=10 Score=39.80 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=71.2
Q ss_pred chHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhh----cccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043087 265 YNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMG----FQFDIRDLLKHYQNILLVLLLLFSCIASRMI 340 (754)
Q Consensus 265 ~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G----~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~ 340 (754)
++|.+.-|+.|++++-- ++++. +-+.....+.-....-+| +.+.-+.+... ...++.-+.+.++.-++
T Consensus 16 ~sP~llFf~~Gmlia~~---ksdl~--iP~~i~~~lslyLL~aIG~kGGveir~snl~a~---v~~~~~~~aL~~li~~i 87 (372)
T COG3329 16 LSPTLLFFILGMLIAAF---KSDLE--IPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAM---VLPVALGVALGFLIVFI 87 (372)
T ss_pred ccchHHHHHHHHHHHHH---hcccc--CchHHHHHHHHHHHHHHhcccceeeecCCcchh---HHHHHHHHHHHHHHHHH
Confidence 48888999999988832 11110 000111111122223344 44444444432 44445555667777788
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHH
Q 043087 341 GTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHR 391 (754)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~ 391 (754)
..++..++.|++..|+..++-.-.....+.++.+..-+++.|+ ..+-|.
T Consensus 88 a~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi--ayeaym 136 (372)
T COG3329 88 AYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI--AYEAYM 136 (372)
T ss_pred HHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCc--cHHHHH
Confidence 8888889999999999999988888888888777776763454 444443
No 97
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=87.85 E-value=1.1 Score=48.80 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhH-HHH
Q 043087 294 YSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNF-ELI 372 (754)
Q Consensus 294 ~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~-~l~ 372 (754)
.+..+.|+-+||.++|+.-++..+.....................-......+.+.++++.-++..|-.--.-|.= +.+
T Consensus 65 ~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA 144 (404)
T COG0786 65 TSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAA 144 (404)
T ss_pred cccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHH
Confidence 3678899999999999999999887652222112222223333444445555677788777666664422222322 234
Q ss_pred HHHHhhhccccccchhhH--HHHHHHHHHHHHhHHHHHHHHhcccc
Q 043087 373 LIDVEAGRSATWWSPMIH--RMLLIVVVLNTLITGPIIASILRRNE 416 (754)
Q Consensus 373 l~~~~~~~~~ii~~~~~~--~~lv~~~vls~~i~~pl~~~l~~~~~ 416 (754)
.+....+ .|.- +.... +...+-.+.-.++++|+.+|+.+|.+
T Consensus 145 ~~~~f~~-~G~~-~A~~va~A~ATfGlv~GgliGgpva~~li~k~~ 188 (404)
T COG0786 145 WGPTFED-LGAE-GATEVAMASATFGLVAGGLIGGPVARWLIKKNK 188 (404)
T ss_pred HHHHHHh-cCCc-chHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence 4555555 6654 33222 22234445556678899999887643
No 98
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.52 E-value=3.9 Score=45.31 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=57.3
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043087 272 FLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYF-GYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLK 350 (754)
Q Consensus 272 flaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF-~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~ 350 (754)
.++|.+..+.+-+.++....+..++..+++|.+. ..++-..+...+.+ ++.+.+...+..+.-++..++..++++
T Consensus 13 i~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 13 ILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS----LWFIPVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444433334445566777888999999984 45554444554444 334444334444444556666677777
Q ss_pred CChHHHHHH--HHHhhhhhhHHHHHHHHhhh
Q 043087 351 IPRIKAVLL--AFVLNLKGNFELILIDVEAG 379 (754)
Q Consensus 351 ~~~~~~~~l--g~~l~~kG~~~l~l~~~~~~ 379 (754)
.+.+++... +...+.-|-+.+-+....+.
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g 119 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALFG 119 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence 776655432 33344556666655544443
No 99
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=86.37 E-value=55 Score=35.71 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHH-HHHHHHhhhhh-hHHHHH
Q 043087 297 HNFVLPIYFGYMGFQ-FDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKA-VLLAFVLNLKG-NFELIL 373 (754)
Q Consensus 297 ~~~f~plFF~~~G~~-~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~-~~lg~~l~~kG-~~~l~l 373 (754)
+.+.-|+. +.+|.. +|++.+.+. .+|..++. ++...++-..+.++.+|+.|+-+-|+ +.-|+.|+.+| .-|+++
T Consensus 326 k~~t~~Lm-~giGv~ytdl~ev~~a-lt~~~vii-~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 326 KNLTWPLM-AGIGVAYTDLNEVAAA-LTWQNVII-ALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HhhHHHHH-HhhhhccccHHHHHHH-hchhHHHH-HHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHH
Confidence 34444544 466776 899888775 55665443 34445566778888899998655554 55558888775 445666
Q ss_pred HHHhhhccccc
Q 043087 374 IDVEAGRSATW 384 (754)
Q Consensus 374 ~~~~~~~~~ii 384 (754)
.+.+-+ .+++
T Consensus 403 LsAa~R-M~Lm 412 (438)
T COG3493 403 LSAADR-MELM 412 (438)
T ss_pred hhhcch-hccc
Confidence 665555 6665
No 100
>PRK04972 putative transporter; Provisional
Probab=85.44 E-value=12 Score=43.71 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=74.2
Q ss_pred cCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhH---HHhchhHHHHHHHH
Q 043087 41 LGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAY---LRTNMDLAATIASG 117 (754)
Q Consensus 41 l~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~---l~~~~k~~~~i~~~ 117 (754)
+++-.--|.+++|+++|- ++...+..+-.|+. ...++.++|+.+|+..+|+.--.+- +++.+.+.+.+|..
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~~~~~~p~~----a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHPTFGYIPQG----ALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCCCceeeCHH----HHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 445556789999999985 45555433334432 2345788898889999999876654 44555566666777
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHHHHh
Q 043087 118 GLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRLIDE 168 (754)
Q Consensus 118 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~lL~e 168 (754)
-.++|.++++.+++++++. ++ ...+| ++=+.|++|.+.-..+.
T Consensus 482 ~t~~~~~~~~~~~~~~~k~------~~--~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRM------NR--ALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHHHHHHHHHcC------CH--HHHHHHHhCCCCCcHHHHHHHhh
Confidence 6778888888888777666 22 23333 44567777777666443
No 101
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=84.78 E-value=13 Score=40.23 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhc
Q 043087 21 FVQISLMLVIAHIFNLIFKPLGQPG--PISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLE 98 (754)
Q Consensus 21 l~~i~lil~~~~~~~~l~~rl~lP~--ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle 98 (754)
..++.+++.++...+++++++|+|. ++|-++++.++.-. +..+ .-+| .....++.+ ++=-.+|.+
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~--~~~~---~~~P-----~~l~~~aqv---~iG~~iG~~ 220 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLF--GGPS---FSLP-----PWLVNAAQV---LIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hCCC---CCCC-----HHHHHHHHH---HHHHHHHcc
Confidence 3456666777888999999999875 55666655555432 1111 1112 222234443 377799999
Q ss_pred cChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043087 99 MDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFV 136 (754)
Q Consensus 99 ~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~ 136 (754)
+|.+.+++..| .+..++....+-++++.+.++.+..+
T Consensus 221 f~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 221 FTRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988544 44555555555555555555554433
No 102
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=84.23 E-value=34 Score=36.92 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=76.4
Q ss_pred cCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHH-
Q 043087 41 LGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGL- 119 (754)
Q Consensus 41 l~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~- 119 (754)
++.|.+++.++ |+++...... - |+...+..+.++....-+-||.+|+.++.+.+++..|..+.....-.
T Consensus 180 ~~nP~iia~i~-Gl~~~~~~i~--l-------P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLVGFK--M-------PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHHhhc--C-------cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 57788887654 4665543221 1 12334556678888888999999999999888876666655555544
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHH
Q 043087 120 LVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYS 196 (754)
Q Consensus 120 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~ 196 (754)
+.|.+. +.++. +++. + .......+..+.+.+++...+++++--.+. +.+-+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~-~~~l------~-~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISK-LIGL------R-GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHH-HhCC------C-hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 355544 33333 3333 1 123344455565555677777766532332 3344444444444444433
No 103
>COG0679 Predicted permeases [General function prediction only]
Probab=84.01 E-value=66 Score=34.59 Aligned_cols=135 Identities=14% Similarity=0.154 Sum_probs=77.6
Q ss_pred chHhHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043087 265 YNSTITGFLLGVFFPRDG-KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTL 343 (754)
Q Consensus 265 ~s~~lGaflaGl~i~~~~-~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~ 343 (754)
.+|.+=|+++|+++...+ +.. +..++..+...+.-.|+=.+..|+.++....... .+..+......-.+..++..+
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP-~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~--~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLP-APLDTAVDLLASAASPLALIALGLSLAFLKLKGS--KPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc--cchhHHHHHHHHHHHHHHHHH
Confidence 355556666666665211 122 2456666778899999999999999998544442 233333333334667788888
Q ss_pred HHHhhcCCChHHHHHHHHHh--hhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHH
Q 043087 344 FVCHRLKIPRIKAVLLAFVL--NLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPII 408 (754)
Q Consensus 344 l~~~~~~~~~~~~~~lg~~l--~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~ 408 (754)
+..+.++++..+.. ...++ .|-+....+++. + .+.- .+...+.+.++++++.+..|...
T Consensus 244 ~~~~~~~l~~~~~~-v~vl~~a~P~A~~~~v~a~---~-~~~~-~~laa~~i~ist~ls~~t~p~~~ 304 (311)
T COG0679 244 LVAKLLGLSGLALQ-VLVLLSAMPTAVNAYVLAR---Q-YGGD-PRLAASTILLSTLLSLLTLPLLI 304 (311)
T ss_pred HHHHHcCCChHHHH-HHHHHhhCcHHhHHHHHHH---H-hCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899998876662 22323 344544444433 3 3432 34444455555555544333333
No 104
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=83.49 E-value=15 Score=39.15 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 87 SRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYIS 133 (754)
Q Consensus 87 gli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l 133 (754)
++.|+.|..|..+|++.+.+.+...+.+++..+.+++.+++.+..++
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55668899999999999999999999998888888877777666543
No 105
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=83.14 E-value=41 Score=37.54 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccC
Q 043087 23 QISLMLVIAHIFNLIFKP--LGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMD 100 (754)
Q Consensus 23 ~i~lil~~~~~~~~l~~r--l~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d 100 (754)
.+.+...++..+...++. +.+|..++.+++|+++.+.. ..... .+. ..+..+.++.+.+-+++-.+=..++
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~-~~~-----~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF-PWV-----AERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc-ccc-----chHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344444455555555554 77999999999999998632 11111 111 1234456778777777777777999
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHH----HHHHHHHhcccHHHH-HHHHHh-cCccCC
Q 043087 101 TAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFS----ITITILLANSASPVV-MRLIDE-LKFNTS 174 (754)
Q Consensus 101 ~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----l~i~~~ls~Ts~~vv-~~lL~e-~~~l~s 174 (754)
+..+....-..+++.+.|.++..+....+.+-+.+. ....+ -..|..+-+|+.++. ++-+.| .|-.+.
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~------~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~ 369 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALYAIFVTFRLMGK------DYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQ 369 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccc------hHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCc
Confidence 999999999888888888887766554443322221 12212 234445555554433 233333 333222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 043087 175 ELGRLASTTSLINEVGCIIYYSSF 198 (754)
Q Consensus 175 ~~g~l~ls~a~~~Di~~i~ll~~~ 198 (754)
.+=-+=+-.+.+-|++..+++...
T Consensus 370 af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 370 AFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred ceehhhhHHHHHHHHhhHHHHHHH
Confidence 222333455677777776655544
No 106
>PRK03818 putative transporter; Validated
Probab=82.51 E-value=35 Score=39.88 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHh----chhHHHHHHHHHHHH
Q 043087 46 PISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRT----NMDLAATIASGGLLV 121 (754)
Q Consensus 46 ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~----~~k~~~~i~~~~~~l 121 (754)
--|-+++|+++|- ++...+..+..|+. ....+.++|+.+|+..+|++--.+-+.. .+.+...+|..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~~p~~----a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWFMPPS----ANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceeecCHH----HHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4679999999985 34443333334432 2345778898999999999887765543 345555666766777
Q ss_pred HHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHHHHHHH
Q 043087 122 SFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASPVVMRL 165 (754)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~vv~~l 165 (754)
|.+++..+++++++. ++ ....| ++=+.|++|.+.-.
T Consensus 477 ~~~~~~~~~~~~~~~------~~--~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM------NY--LTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC------CH--HHHHHHHhccCCCcHHHHHH
Confidence 888888777666665 22 23333 34567777777655
No 107
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=81.90 E-value=16 Score=36.25 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHH
Q 043087 298 NFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELIL 373 (754)
Q Consensus 298 ~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l 373 (754)
.+..-+|++.+.+.-|-..+.+-.+.-+..+.+-+..+++-+++.++..++.++|.+|++.++..+.=-.--+..+
T Consensus 29 ~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i 104 (191)
T PF03956_consen 29 ALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLI 104 (191)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHH
Confidence 3445555555544445322222100123355666778889999999999999999999999887665444433333
No 108
>COG2985 Predicted permease [General function prediction only]
Probab=81.65 E-value=14 Score=41.43 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhccChh---HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHH-HHHhcccHH
Q 043087 85 FISRILFMFLIGLEMDTA---YLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITIT-ILLANSASP 160 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~---~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~-~~ls~Ts~~ 160 (754)
++|+++|.+.+|+|--+. .+++.+++-..+++.- ++.+..+++.+..++ .++. .+..| .+=+.|++|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~---~~~~--~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF---GIDL--GLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc---CCCH--HHhhhhhcccccCCc
Confidence 788889999999999875 4567777765555533 333344444443332 1222 22222 233456666
Q ss_pred HH---HHHHHhcCcc
Q 043087 161 VV---MRLIDELKFN 172 (754)
Q Consensus 161 vv---~~lL~e~~~l 172 (754)
.. ...|+|++..
T Consensus 133 ~L~aa~~~L~~lg~~ 147 (544)
T COG2985 133 GLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHhhccc
Confidence 55 4566666643
No 109
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=81.64 E-value=0.26 Score=54.64 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCchHhHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHH
Q 043087 253 VVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTR-TLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLL 331 (754)
Q Consensus 253 ~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~-~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~ 331 (754)
++....+.+.++++..+|-.++|+++...+ ..- +..+...+.+.++.+++.....|.++|...+... +.......
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~---~~~~~~~~ 83 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRN---WRRALALG 83 (380)
T ss_dssp -----------------------------------------S-SSHHHHS--SSHHHHTTGGGG----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccc---cccccccc
Confidence 444444788999999999999999998532 220 0012334556788888888899999999998775 44444444
Q ss_pred HHHHHHHHHH-HHHHHh---hcCCChHHHHHHHHHhhhhh
Q 043087 332 FSCIASRMIG-TLFVCH---RLKIPRIKAVLLAFVLNLKG 367 (754)
Q Consensus 332 ~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~l~~kG 367 (754)
+..++.-.+. .+.... ..++++.+++.+|..+++-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 84 LVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ------------------------------TTHHHHTT--
T ss_pred cceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 4444444444 444442 47889999999998877543
No 110
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=79.09 E-value=13 Score=39.15 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHH
Q 043087 247 LFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILL 326 (754)
Q Consensus 247 ~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~ 326 (754)
..-+.++|..+.+++.+.++|.+|-.++|++.....|-.. --+.+..-..++=.-+....+|+++.+.++... +.|..
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFv-ad~~La~~LAelGViLLmFgvGLhfslkdLLav-k~iAi 89 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFV-ADQTLAPELAELGVILLMFGVGLHFSLKDLLAV-KAIAI 89 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcc-cchhHHHHHHHhhHHHHHHhcchheeHHHHhhH-HHHhc
Confidence 4556778888999999999999999999999874433111 011111123344444556689999999887764 44432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccc
Q 043087 327 VLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATW 384 (754)
Q Consensus 327 ~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii 384 (754)
-.. +.-+..-..-.+..+...|+++...+..|+.++.-..+ +..-++++.+.+
T Consensus 90 pgA--l~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV---vllraLqEr~li 142 (408)
T COG4651 90 PGA--LAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV---VLLRALEERQLI 142 (408)
T ss_pred chH--HHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH---HHHHHHHHhccc
Confidence 111 11111112223344566788998999999888775553 333444424554
No 111
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=76.58 E-value=1.2e+02 Score=32.86 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHH
Q 043087 85 FISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFV----FGIILTYISRFVLDIKDNTPAFSITITILLANSASP 160 (754)
Q Consensus 85 ~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~ 160 (754)
.+++++.|+=.=+++|.+++++..|+.-.+. .+...-++ +.+++++++++.. +.-....+.+|++= .||..
T Consensus 54 ai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii~P~lm~~la~~fl~~~---pey~~GlILlglAp-C~aMV 128 (342)
T COG0798 54 AIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWIIGPLLMFALAWFFLPDE---PEYRAGLILLGLAP-CIAMV 128 (342)
T ss_pred HHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhh-hHHHH
Confidence 3555567777778999999988776643222 22222222 2344455444321 10011122222221 22222
Q ss_pred HHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 161 VVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFVTV 201 (754)
Q Consensus 161 vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~ 201 (754)
.+-. ++.+.+. ..++..-.+||++.+++++....+
T Consensus 129 ivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 129 IVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2333 3333333 345666778999998888666544
No 112
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=76.49 E-value=62 Score=37.92 Aligned_cols=76 Identities=9% Similarity=0.136 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------cCCChHHHHHHHHHhh
Q 043087 294 YSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR---------LKIPRIKAVLLAFVLN 364 (754)
Q Consensus 294 ~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lg~~l~ 364 (754)
+.+..+++|.-....|..+|...+..+ +..++.+.+...+.-.+.+....++ .++|+.+++.+|.+++
T Consensus 66 ~lf~~~~LPpIlFe~g~~l~~~~f~~n---~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiS 142 (559)
T TIGR00840 66 SYFFLYLLPPIVLDAGYFMPQRNFFEN---LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLIS 142 (559)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhc
Confidence 345667888888899999999998876 4545544444444443333322221 3569999999999999
Q ss_pred hhhhHHHH
Q 043087 365 LKGNFELI 372 (754)
Q Consensus 365 ~kG~~~l~ 372 (754)
+-.-++..
T Consensus 143 aTDPVAVl 150 (559)
T TIGR00840 143 AVDPVAVL 150 (559)
T ss_pred CCchHHHH
Confidence 88877654
No 113
>COG2431 Predicted membrane protein [Function unknown]
Probab=76.12 E-value=36 Score=35.43 Aligned_cols=77 Identities=22% Similarity=0.188 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccC---hh--HHHhchhHHHHHHHHHH
Q 043087 45 GPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMD---TA--YLRTNMDLAATIASGGL 119 (754)
Q Consensus 45 ~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d---~~--~l~~~~k~~~~i~~~~~ 119 (754)
++.+..+.|+++|-..-...+ + .+...+..+.+++|.+|.++. .. +.+- -|+.+..++...
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~-----~--------~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~L-nk~gl~l~~i~i 173 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLN-----F--------PENASEYLLYLLLFLIGIQLGNSGISLRQVLL-NKRGLILAFITL 173 (297)
T ss_pred HHHHHHHHHHHHHHHhccccc-----C--------chhHHHHHHHHHHHHHHHHhccccchhhhHHh-ccchHHHHHHHH
Confidence 566777888888753222111 1 122455666779999999987 22 2222 256556665544
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043087 120 LVSFVFGIILTYISRFV 136 (754)
Q Consensus 120 ~l~~~~~~~~~~~l~~~ 136 (754)
+-.. +|..++.+++++
T Consensus 174 lssl-iGG~iaa~~l~l 189 (297)
T COG2431 174 LSSL-IGGLIAAFLLDL 189 (297)
T ss_pred HHHH-HHHHHHHHHHhc
Confidence 4444 444455545555
No 114
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=76.10 E-value=14 Score=40.01 Aligned_cols=115 Identities=15% Similarity=0.009 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHH
Q 043087 295 SIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILI 374 (754)
Q Consensus 295 ~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~ 374 (754)
.-++++=|+-|..+|..+|+.-+..+ ....++.-..+-++- ..+++.+..+|++.+|+..+|.+=..-|-.++.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllan---P~~~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILAR---PWASITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhC---hHHHHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 34678888999999999999988765 222222122333333 33455666789999999999998777787777664
Q ss_pred HHhhh-ccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccc
Q 043087 375 DVEAG-RSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENY 418 (754)
Q Consensus 375 ~~~~~-~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~ 418 (754)
+.--. -.|.+ .-..|+-| -+.=++.||++|.+..+.+|.
T Consensus 178 ~kLAp~Llg~I-aVAAYsYM----aLVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 178 LILAKDLFVPI-SIIAYLYL----SLTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred HhhhhHhHHHH-HHHHHHHH----HHHhcccchHHHhhcCHHHHc
Confidence 43211 01222 22223322 222346789999887655443
No 115
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=74.40 E-value=34 Score=33.88 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---CCChhHHHHHHHHhcCcccccccccccccccccchHHH--HHHHHHHHH----HHH
Q 043087 21 FVQISLMLVIAHIFNLIFKPL---GQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFY--YRVFAFISR----ILF 91 (754)
Q Consensus 21 l~~i~lil~~~~~~~~l~~rl---~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~--~~~l~~igl----i~l 91 (754)
...+.++=++.++.+++.||+ |++.----|+.|+++...+ |....= .+...++ +.-++.+|= =|-
T Consensus 15 i~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG-----~kGlaDi~lfsGiglmGGaMlRDfA 88 (254)
T TIGR00808 15 ITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG-----EKGLADIAIFGGFGLMGGAMLRDLA 88 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC-----ccccchhhhhcchhhhhhHHHHHHH
Confidence 344444555556666677765 4666666778888875421 111110 0111111 111111110 011
Q ss_pred HHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043087 92 MFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFV 136 (754)
Q Consensus 92 lF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~ 136 (754)
.-....|.|++++||.+..-.+--+.+..+||++|..+++. +++
T Consensus 89 IvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a-fGY 132 (254)
T TIGR00808 89 IVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWA-FGY 132 (254)
T ss_pred HHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 23467799999999999887766678889999999999885 466
No 116
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=73.94 E-value=15 Score=39.19 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043087 296 IHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILID 375 (754)
Q Consensus 296 ~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~ 375 (754)
-++++=|+-|..+|..+|+.-+..+ ... .++-..+-++ ...++..+..+|++.+|+..+|.+=..-|-.++.+.+
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan---P~~-~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN---PKT-LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC---HHH-HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 4678888999999999999987765 222 2222223333 2346666777799999999999987777877776644
Q ss_pred Hhh-hccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccc
Q 043087 376 VEA-GRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENY 418 (754)
Q Consensus 376 ~~~-~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~ 418 (754)
.-- +-.+.+ .-..|+-| -+.=++.||++|.+..+.+|.
T Consensus 142 ~LAp~LlgpI-aVaAYsYM----aLvPiiqPpimklLttkkeR~ 180 (360)
T PF03977_consen 142 KLAPHLLGPI-AVAAYSYM----ALVPIIQPPIMKLLTTKKERK 180 (360)
T ss_pred hhhHHHHHHH-HHHHHHHH----HHHhhhhhHHHHHhcCHHHHh
Confidence 321 101222 22223322 222346799999887655443
No 117
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=73.17 E-value=1.3e+02 Score=31.90 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043087 297 HNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDV 376 (754)
Q Consensus 297 ~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~ 376 (754)
..+++=.|++.++.--|+..+... +..++..+...+...+..+..+++++.+..+-...++ -|..|-.+.-....
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~ta----P~~i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~ 349 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTA----PLIILFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAI 349 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHh
Confidence 456667889999999999988763 2333333445556777888888999988877554443 56777777666666
Q ss_pred hhh
Q 043087 377 EAG 379 (754)
Q Consensus 377 ~~~ 379 (754)
+..
T Consensus 350 A~n 352 (384)
T COG5505 350 AKN 352 (384)
T ss_pred hcC
Confidence 655
No 118
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=72.69 E-value=8.8 Score=40.01 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=25.0
Q ss_pred CcchHHHHHHHHHHhhCC-CEEEEEEEeee
Q 043087 607 GADDREALALSKRIGKNS-NINLTVIRFLY 635 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~-~v~ltv~r~~~ 635 (754)
.|.|+-||+.|.|+.++. +.++|++.+=+
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp 64 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGG 64 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECC
Confidence 788999999999999875 48999998854
No 119
>PRK12342 hypothetical protein; Provisional
Probab=72.50 E-value=7.8 Score=40.32 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=24.2
Q ss_pred CcchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 607 GADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
.|.|+-||+.|.|+.+ .+.++||+.+=+
T Consensus 34 Np~D~~AlE~AlrLk~-~g~~Vtvls~Gp 61 (254)
T PRK12342 34 SQFDLNAIEAASQLAT-DGDEIAALTVGG 61 (254)
T ss_pred ChhhHHHHHHHHHHhh-cCCEEEEEEeCC
Confidence 7889999999999995 578999988843
No 120
>PRK09903 putative transporter YfdV; Provisional
Probab=72.46 E-value=1e+02 Score=33.06 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=63.6
Q ss_pred cCCChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHH-
Q 043087 41 LGQPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGL- 119 (754)
Q Consensus 41 l~lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~- 119 (754)
++-|.+++.+++ +++.- +|..- |+...+..+.+|....-+-||.+|..++...++.. ++.+...+.-.
T Consensus 171 ~~nP~iia~~~g-l~~~l--~~i~l-------P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVLA-TILVL--VGVKI-------PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHHH-HHHHH--cCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 456777776554 44432 33222 13345556678888888899999999877665543 34443333333
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCC
Q 043087 120 LVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTS 174 (754)
Q Consensus 120 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s 174 (754)
+.|++. ....+ +.+. + .........++.+.+++...++.++--.+.
T Consensus 240 ~~P~i~-~~~~~-~~~l------~-~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~ 285 (314)
T PRK09903 240 LMPLAL-LLVGM-ACHL------N-SEHLQMMVLAGALPPAFSGIIIASRFNVYT 285 (314)
T ss_pred HHHHHH-HHHHH-HcCC------C-cHHHHHHHHHHcccHHHHHHHHHHHHcccH
Confidence 356544 22222 2333 1 123445556666666677888776543333
No 121
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=72.13 E-value=64 Score=35.76 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHhh---hhh
Q 043087 292 LAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIP-RIKAVLLAFVLN---LKG 367 (754)
Q Consensus 292 ~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~-~~~~~~lg~~l~---~kG 367 (754)
..+.+++.++|+-....=++.|++.+... .. -.+..+++..++-.+++.+....++.. -.|.+..+-.+. .-|
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~--g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGG 128 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL--GG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGG 128 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh--hH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCc
Confidence 34567788888887777889999988763 33 344455566666666776666666543 345555443333 336
Q ss_pred hHHHHHHHHhhhccccccchhhHHHHHHH
Q 043087 368 NFELILIDVEAGRSATWWSPMIHRMLLIV 396 (754)
Q Consensus 368 ~~~l~l~~~~~~~~~ii~~~~~~~~lv~~ 396 (754)
..-++....+++ . +++.+...+.+
T Consensus 129 s~N~~Av~~al~----~-~~~~~~a~~aa 152 (378)
T PF05684_consen 129 SVNFVAVAEALG----V-SDSLFAAALAA 152 (378)
T ss_pred hhHHHHHHHHHC----C-CHHHHHHHHHH
Confidence 666666555555 3 66666655444
No 122
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=70.63 E-value=56 Score=36.41 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHHHHhCchHhHHHHHHHhhccCCCCchHHH--HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHH
Q 043087 256 LAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTL--FKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFS 333 (754)
Q Consensus 256 ~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~--~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~ 333 (754)
++-++..+|....+=-...|++...++ .+.-. -..+.+.+..+-+.+-..--|++++++.+... .|....+..+.
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a--~~palsLATlG 98 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA--AGPALSLATLG 98 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH--hhhhHHHHHHH
Confidence 344555666666666666676666432 21100 02334556667777777788999999887653 34444444445
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhh
Q 043087 334 CIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKG 367 (754)
Q Consensus 334 ~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG 367 (754)
.++.-.+....+.+.++++|-|++.+|.+.+.--
T Consensus 99 Vl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 99 VLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 5555566666777889999999999998776543
No 123
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=69.28 E-value=1.5e+02 Score=32.05 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=54.9
Q ss_pred HhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHHHHHHHHHh---hhhhhHHHHHHHHhhhccc
Q 043087 307 YMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR-LKIPRIKAVLLAFVL---NLKGNFELILIDVEAGRSA 382 (754)
Q Consensus 307 ~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-~~~~~~~~~~lg~~l---~~kG~~~l~l~~~~~~~~~ 382 (754)
..|++++++++.+..+.+..+....+.-++..++..+..++. ++.+.. +.+|+.+ +|-|..+.+...++..
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lAkG--- 129 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLAKG--- 129 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHcCC---
Confidence 445777666665543446666666777777888888887775 466644 6666644 3556655555555444
Q ss_pred cccchhh-HHHHHHHHHHHHHhHHHHHHHH
Q 043087 383 TWWSPMI-HRMLLIVVVLNTLITGPIIASI 411 (754)
Q Consensus 383 ii~~~~~-~~~lv~~~vls~~i~~pl~~~l 411 (754)
|... -++..+..+++.+++|+++..+
T Consensus 130 ---nvalsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 130 ---DPEYTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2222344444444556665544
No 124
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=69.12 E-value=94 Score=29.25 Aligned_cols=29 Identities=28% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 043087 17 LVSTFVQISLMLVIAHIFNLIFKPLGQPG 45 (754)
Q Consensus 17 l~~~l~~i~lil~~~~~~~~l~~rl~lP~ 45 (754)
...++.|+++++++..+...+.+-+++|-
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPi 34 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPM 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34678899999988888777777777663
No 125
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.34 E-value=14 Score=39.89 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhHHH
Q 043087 297 HNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR-----LKIPRIKAVLLAFVLNLKGNFEL 371 (754)
Q Consensus 297 ~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~l~~kG~~~l 371 (754)
++++=|+-|..+|..+|+.-+..+ ....++-..+-++-+.....+..+ .|++.+|+..+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlan----P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLAN----PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhC----HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccccc-ccccccccCCC
Q 043087 372 ILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENYFA-HRNTSVESLDP 431 (754)
Q Consensus 372 ~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 431 (754)
.+.+.--. .++ .+-.-..-..+.++-. +.||++|.+-.+.+|..+ ++.|++.+...
T Consensus 209 fvsskLAP--~Ll-g~IaVAAYSYMaLVPi-IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 209 YLSGKLAP--ELL-GAIAVAAYSYMALVPL-IQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhh--HhH-HHHHHHHHHHHHHHhc-ccchHHHhccCHHHhCccCCCCCCCCccch
No 126
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.16 E-value=14 Score=39.86 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhHHH
Q 043087 297 HNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR-----LKIPRIKAVLLAFVLNLKGNFEL 371 (754)
Q Consensus 297 ~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~l~~kG~~~l 371 (754)
++++=|+-|..+|..+|+.-+..+ ....++-..+-++-++....+..+ .|++.+|+..+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlan----P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLAN----PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhC----HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccccc-ccccccccCCC
Q 043087 372 ILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENYFA-HRNTSVESLDP 431 (754)
Q Consensus 372 ~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 431 (754)
.+.+.--. .++ .+-.-..-..+.++-. +.||++|.+-.+.+|..+ ++.|++.+...
T Consensus 209 fvsskLAP--~Ll-g~IaVAAYSYMaLVPi-IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 209 YLSGKLAP--ELL-GAIAVAAYSYMALVPL-IQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhh--HhH-HHHHHHHHHHHHHHhc-ccchHHHhccCHHHhCccCCCCCCCCccch
No 127
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=68.16 E-value=24 Score=33.76 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=56.4
Q ss_pred hHhHHHHHHHhhccCCC---CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh-hH-HHHHHHHHHHHHHHHHH
Q 043087 266 NSTITGFLLGVFFPRDG---KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHY-QN-ILLVLLLLFSCIASRMI 340 (754)
Q Consensus 266 s~~lGaflaGl~i~~~~---~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~-~~-~~~~~~~~~~~~~~K~~ 340 (754)
-..-|++++|+++.+-. |..-.+-+.....++++.+-+|...+|++.-.+.+..-. .. +.......++.++.-.+
T Consensus 22 G~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33457888888887533 222222234556788999999999999998754433210 11 22333333444444566
Q ss_pred HHHHHHhhcCCChHHHHHHHH
Q 043087 341 GTLFVCHRLKIPRIKAVLLAF 361 (754)
Q Consensus 341 ~~~l~~~~~~~~~~~~~~lg~ 361 (754)
..++..+++|++.. ...|.
T Consensus 102 ~~~~~~~~~~~~~~--~~~G~ 120 (154)
T TIGR01625 102 VAVALIKLLRINYA--LTAGM 120 (154)
T ss_pred HHHHHHHHhCCCHH--HHHHH
Confidence 67777778899875 34444
No 128
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.13 E-value=14 Score=39.86 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhHHH
Q 043087 297 HNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHR-----LKIPRIKAVLLAFVLNLKGNFEL 371 (754)
Q Consensus 297 ~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~l~~kG~~~l 371 (754)
++++=|+-|..+|..+|+.-+..+ ....++-..+-++-++....+..+ .|++.+|+..+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlan----P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLAN----PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhC----HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHhcccccccc-ccccccccCCC
Q 043087 372 ILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASILRRNENYFA-HRNTSVESLDP 431 (754)
Q Consensus 372 ~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 431 (754)
.+.+.--. .++ .+-.-..-..+.++-. +.||++|.+-.+.+|..+ ++.|++.+...
T Consensus 209 fvsskLAP--~Ll-g~IaVAAYSYMaLVPi-IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 209 YLSGKLAP--ELL-GAIAVAAYSYMALVPL-IQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhh--HhH-HHHHHHHHHHHHHHhc-ccchHHHhccCHHHhCccCCCCCCCCccch
No 129
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=66.31 E-value=1.6e+02 Score=30.05 Aligned_cols=88 Identities=10% Similarity=0.153 Sum_probs=62.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHH
Q 043087 315 RDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLL 394 (754)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv 394 (754)
+.+.++ |..+..-+++..+.-++..++.+++++.+.. +.. .+.+|....-+-..+..+ .|-+ ++-.....+
T Consensus 84 ~~ik~~---w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~PkSvTTpiAm~vs~~-iGGi-p~ltav~Vi 154 (230)
T COG1346 84 HLIKRH---WKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLLPKSVTTPIAMEVSES-IGGI-PALTAVFVI 154 (230)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--HhcccccccHHHHHHHHh-cCCc-hHHHHHHHH
Confidence 344444 6666666777777788888999999998755 333 368999888777777777 7776 554545556
Q ss_pred HHHHHHHHhHHHHHHHH
Q 043087 395 IVVVLNTLITGPIIASI 411 (754)
Q Consensus 395 ~~~vls~~i~~pl~~~l 411 (754)
++-++..++++++.+++
T Consensus 155 ~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 155 LTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666677777777765
No 130
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=64.65 E-value=1.4e+02 Score=32.61 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=56.7
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCccc--ccccccccccccccchHHHHHHHHHHHHHHHH
Q 043087 16 PLVSTFVQ-ISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSF--LSQINKIRSFFIQDLSAFYYRVFAFISRILFM 92 (754)
Q Consensus 16 ~l~~~l~~-i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~--lg~i~~~~~~f~~~~~~~~~~~l~~igli~ll 92 (754)
+++..... +.+...++.+.+.+.+++|+|. +++++.++++-.+ .+.++- ..... +..++-.++-
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa--~~ll~~l~l~a~v~~~~~~~~--------~lP~w---l~~va~~~iG 247 (352)
T COG3180 181 WLPPVDWLILLLLILAALLGGLLGKLLRFPA--PTLLGPLLLGAIVHFGGGITI--------QLPAW---LLAVAQALIG 247 (352)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhhcccceee--------eCCHH---HHHHHHHHHH
Confidence 44444444 6666777788889999999986 3344444443211 111110 11222 2233334477
Q ss_pred HHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 93 FLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYIS 133 (754)
Q Consensus 93 F~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l 133 (754)
-.+|.++|-..++...|-. .-++.+.+.-++.+.++++++
T Consensus 248 ~~IG~~f~~~~l~~~~r~~-~~~~v~ii~l~~~~~~~a~ll 287 (352)
T COG3180 248 ALIGSRFDRSILREAKRLL-PAILVSIIALMAIAAGMAGLL 287 (352)
T ss_pred HHHcccccHHHHHHhHhhc-chHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998855543 334444433344444555544
No 131
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=63.33 E-value=37 Score=37.27 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=59.0
Q ss_pred eeEEEEeecCCCcccchhh--hcccC--CCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHH
Q 043087 435 FRILSCAYEPRHASGQLVL--SASFG--SSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVD 510 (754)
Q Consensus 435 ~rIlic~~~~~~~~~~i~l--~~~~~--~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~ 510 (754)
.|||+++-+.++....+.- +..+. ..-.++.+|.++.... .+. ... .....++++ +..+
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~------~~~-~~~-------~~~~~eell---e~~~ 68 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAV------DPE-GQD-------ELAAAEELL---ERVE 68 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccc------ccc-hhH-------HHHHHHHHH---HHHH
Confidence 3799999888776655554 33333 2467888888764211 110 000 001122233 4444
Q ss_pred hhhc------cCceeEEEeEEee-----CCCchHHHHHHHHhccCccEEEecCC
Q 043087 511 SFTA------QTRIRISQVKIVN-----TFANMYEDVCNAAEDFRVTIIFLPFH 553 (754)
Q Consensus 511 ~~~~------~~~V~v~~~~~vs-----~~~~m~edI~~~A~e~~a~LIilpfh 553 (754)
+... ..++.+++..... ...+.++.|++.|++.++|+|+|+=.
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 3322 2467777665442 11367899999999999999999853
No 132
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=62.57 E-value=1.3e+02 Score=32.38 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=53.5
Q ss_pred hHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043087 268 TITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCH 347 (754)
Q Consensus 268 ~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 347 (754)
++.+.++|...|.-+...... +.+ ........+-|...|++++.+++.+....|...+......++.=++..+...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~--~~~-~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVI--KPE-YVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCcc--chh-hhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888433221111 111 23334466777789999999888765455666665555666655555555555
Q ss_pred hcCCChHHHHHHHHHh
Q 043087 348 RLKIPRIKAVLLAFVL 363 (754)
Q Consensus 348 ~~~~~~~~~~~lg~~l 363 (754)
..+-...+.+..|+..
T Consensus 84 l~~~~~~~~l~~Gl~~ 99 (313)
T PF13593_consen 84 LFPAFLPPELALGLLI 99 (313)
T ss_pred HhhccCCHHHHHHHHH
Confidence 5532223446666643
No 133
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=61.80 E-value=1.1e+02 Score=32.83 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhh---hhhhHHHHH
Q 043087 297 HNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLN---LKGNFELIL 373 (754)
Q Consensus 297 ~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~---~kG~~~l~l 373 (754)
...++.+.|...|+.+...++......|...+..++..++.=++..+..++.+++|.. +..|+.+. |-|..+.+.
T Consensus 40 ~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~--l~~Gl~ll~~~Pggv~S~~~ 117 (319)
T COG0385 40 IPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPE--LAVGLLLLGCCPGGVASNAM 117 (319)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHhHHheeeCCCchhHHHH
Confidence 3566677788899999888776544558778877888888888889999988886644 66676543 567777555
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHH
Q 043087 374 IDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASI 411 (754)
Q Consensus 374 ~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l 411 (754)
..++.. -. .-.-....+..+++.+++|.++..+
T Consensus 118 t~lAkG---nV--alsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 118 TYLAKG---NV--ALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred HHHhcC---cH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444 11 1122223344555555555555543
No 134
>COG0679 Predicted permeases [General function prediction only]
Probab=59.69 E-value=2.5e+02 Score=30.12 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred hHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043087 268 TITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCH 347 (754)
Q Consensus 268 ~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 347 (754)
++.-...|..+.+.+....+..+.+.+++..+.+|.-+...=.+.+.+...+ +..++..++..++.=+...++..+
T Consensus 12 i~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 12 IFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLAD----LGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444444555567788899999998776666666655422 444444445555555566666667
Q ss_pred hcCCChHHHH--HHHHHhhhhhhHHHHHHH
Q 043087 348 RLKIPRIKAV--LLAFVLNLKGNFELILID 375 (754)
Q Consensus 348 ~~~~~~~~~~--~lg~~l~~kG~~~l~l~~ 375 (754)
..+.+.+++. ..+...+.-|-+.+-++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 7777777663 333344455555543333
No 135
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=59.51 E-value=19 Score=38.92 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=38.3
Q ss_pred HHHHHHHHhhccCCCceEEEEEEe---cChHHHHHHHHHhhcCC---ceeEEEEccCCCC
Q 043087 682 NVFFEEFRLRYVTSGEVGLIERYV---NNGIETLQVLREIMDSI---EFSLFIVGKGSYG 735 (754)
Q Consensus 682 ~~~~~~f~~~~~~~~~v~y~e~~v---~~~~~~~~~~~~~~~~~---~~dL~iVGr~~~~ 735 (754)
.++++..+.++.. -++.+-...| ....+++++|+.....+ +||++|++||+|.
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3566666655432 3577777777 66778999999986432 3999999999874
No 136
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=58.91 E-value=1.1e+02 Score=33.40 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHhcc-CCChhHHHHHHHHhcCccccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhch-hHHH
Q 043087 37 IFKPL-GQPGPISQMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYYRVFAFISRILFMFLIGLE-MDTAYLRTNM-DLAA 112 (754)
Q Consensus 37 l~~rl-~lP~ivg~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igli~llF~~Gle-~d~~~l~~~~-k~~~ 112 (754)
+++.+ ++|..+-.++.|+++-- +|.+++ .. +....+.+++..-....+|+-+|+. .|++++.+.. ...+
T Consensus 197 l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~-----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~v 269 (347)
T TIGR00783 197 LLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE-----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFV 269 (347)
T ss_pred HHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHh
Confidence 33443 68999999999999875 566664 11 0111222222222223355557886 8999998876 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhc
Q 043087 113 TIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLAN 156 (754)
Q Consensus 113 ~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~ 156 (754)
.+.+.+++--.+.++.++.+ .+++ |...++.-|++++.
T Consensus 270 viiv~~Vlg~ii~s~lvGKl-lG~Y-----PiE~aItagLC~~~ 307 (347)
T TIGR00783 270 VICLSVVVAMILGGAFLGKL-MGMY-----PVESAITAGLCNSG 307 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCC-----hHHHHHHHhhhccC
Confidence 33333333333334455553 3553 44445555555553
No 137
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=58.66 E-value=28 Score=33.41 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHhhCCCEEEEEEEee
Q 043087 607 GADDREALALSKRIGKNSNINLTVIRFL 634 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~~v~ltv~r~~ 634 (754)
.+.|+|+|+.|+++++..+.+++++-+=
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 4679999999999999988888888763
No 138
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=58.60 E-value=2.1e+02 Score=28.91 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 130 TYISRFVLDIKDNTPAFSITITILLANSASPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIYYSSFV 199 (754)
Q Consensus 130 ~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~ll~~~~ 199 (754)
+|+...+++++ ......-++|-..|+|+ ++..+-+..|. +.+..+...+..++.....++=..++.
T Consensus 10 gYia~r~~G~r-~Gl~ltg~~GGlvSSTA--~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R~l~iv 75 (211)
T PF13194_consen 10 GYIAVRLLGPR-RGLLLTGLLGGLVSSTA--TTVSLARRSRE-NPELSRLLAAGILLASAVMFVRVLLIV 75 (211)
T ss_pred HHHHHHHHccc-chHHHHHHHHHHHHHHH--HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444332 22344566777788888 55555555443 334455566666666655544333333
No 139
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=58.49 E-value=1.9e+02 Score=28.36 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=38.1
Q ss_pred HHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCChHHHHHHHH-HhhhhhhHHHHHHHHhh
Q 043087 305 FGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVC-HRLKIPRIKAVLLAF-VLNLKGNFELILIDVEA 378 (754)
Q Consensus 305 F~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~-~~~~~~~~~~~~lg~-~l~~kG~~~l~l~~~~~ 378 (754)
....|.+++++++.+....+..+....+.-++..++.++..+ ++++.+...+.-+-+ ..+|-|..+.+....+.
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~ 83 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG 83 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence 446677788777765422344444445566777777788877 666666553332222 23455665555544433
No 140
>PRK10490 sensor protein KdpD; Provisional
Probab=58.28 E-value=29 Score=43.16 Aligned_cols=121 Identities=9% Similarity=0.029 Sum_probs=69.8
Q ss_pred CceeEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHH
Q 043087 433 SEFRILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVD 510 (754)
Q Consensus 433 ~e~rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~ 510 (754)
..-|||+|+.+..+...+|.- ++.....-..+++|......+ + . .....+++. +.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~------------~-~-----~~~~~~~l~---~~~~ 307 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLH------------R-L-----PEKKRRAIL---SALR 307 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcC------------c-C-----CHHHHHHHH---HHHH
Confidence 456899999887776666655 444433444566664311000 0 0 001112232 3443
Q ss_pred hhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCC-ceEEE
Q 043087 511 SFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPC-SVGVL 587 (754)
Q Consensus 511 ~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apC-sVgIl 587 (754)
.+.+.+..+... ..++..+.|.+.|++++++.|+||=.++.+. +. .+++.+++++++|= +|=|+
T Consensus 308 -lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~~-----~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 308 -LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---WR-----RESFADRLARLGPDLDLVIV 372 (895)
T ss_pred -HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---cc-----CCCHHHHHHHhCCCCCEEEE
Confidence 444444333222 2368899999999999999999998665432 10 12478899999983 55554
No 141
>COG2855 Predicted membrane protein [Function unknown]
Probab=58.06 E-value=2.8e+02 Score=30.10 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=57.5
Q ss_pred HhccCCChhHHHHHHHHhcCccccccccc-cc--ccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHH
Q 043087 38 FKPLGQPGPISQMLAGLVLSPSFLSQINK-IR--SFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATI 114 (754)
Q Consensus 38 ~~rl~lP~ivg~ilaGillGP~~lg~i~~-~~--~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i 114 (754)
....++|..+--|+.|+++|. +...+. .+ -.|. ... +-.+|++ +.|.+++++++...+.+.+.+
T Consensus 32 ~~~~~l~al~lAIllGi~l~~--l~~~~~~~~~GI~fs---~k~----LLr~gIv----LlG~~ltl~~i~~~G~~~v~~ 98 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGI--LPQIPAQTSAGITFS---SKK----LLRLGIV----LLGFRLTLSDIADVGGSGVLI 98 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhc--cccchhhhccchhhh---HHH----HHHHHHH----HHcceeeHHHHHHcCccHHHH
Confidence 345779999999999999994 222222 11 1121 122 3445533 459999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043087 115 ASGGLLVSFVFGIILTYISRFV 136 (754)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~l~~~ 136 (754)
-...+..++++++.++. +++.
T Consensus 99 ~~~~l~~t~~~~~~lg~-~lgl 119 (334)
T COG2855 99 IAITLSSTFLFAYFLGK-LLGL 119 (334)
T ss_pred HHHHHHHHHHHHHHHHH-HhCC
Confidence 77777777887777776 4455
No 142
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=57.95 E-value=1.6e+02 Score=35.96 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHH--
Q 043087 83 FAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASP-- 160 (754)
Q Consensus 83 l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~-- 160 (754)
...+.+-++....|++.|+..+.+ +.............-++.+.+.+. +.+. ++..++.+|..++.=..-
T Consensus 311 ~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~k~------p~~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 311 VSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YCKL------PLRDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhcC------chhHHHHHHHHHHhhhHHHH
Confidence 444556677788999999999988 222222222222233333344444 3344 555677777777654411
Q ss_pred HHHHHHHhcCccCCch
Q 043087 161 VVMRLIDELKFNTSEL 176 (754)
Q Consensus 161 vv~~lL~e~~~l~s~~ 176 (754)
++...-.|.|..+++.
T Consensus 383 ~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 383 IVLNTGLDRKILSDEG 398 (769)
T ss_pred HHHHHHhhcCCcccch
Confidence 2333444555555543
No 143
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=57.85 E-value=79 Score=33.86 Aligned_cols=172 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCchHhH-HHHHHHhhccCCCCchH------HHHH--HHHHHHHHHHHHHHHHHhhcccchhhh
Q 043087 247 LFLLVLVVSLAFSIEVLGYNSTI-TGFLLGVFFPRDGKTTR------TLFK--KLAYSIHNFVLPIYFGYMGFQFDIRDL 317 (754)
Q Consensus 247 ~~vl~~~l~~~~~a~~~G~s~~l-GaflaGl~i~~~~~~~~------~~~e--k~~~~~~~~f~plFF~~~G~~~dl~~l 317 (754)
.+.+.+.+..-|++-.-++++.+ =+.-+|+++.|-+.-+- .... -....-++++=|+-|..+|..+|+.-+
T Consensus 3 ~vMi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpl 82 (354)
T TIGR01109 3 AIMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPL 82 (354)
T ss_pred EehHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHH
Q 043087 318 LKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKI------PRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHR 391 (754)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~ 391 (754)
..+ ....++-...-+ -...+++.+.++|+ +.+|+..+|.+=..-|-.++.+ ...+ .++.+.
T Consensus 83 lan---P~~~llGaaAQ~--GiF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~-------s~~l-ap~Llg 149 (354)
T TIGR01109 83 LAN---PRTLLLGAAAQF--GIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL-------SGKL-APELLA 149 (354)
T ss_pred HhC---hHHHHHHHHHHh--hHHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhh-------Hhhh-hhHHHH
Q ss_pred HHHHHHHHHHHhH----HHHHHHHhcccccccc-ccccccccCCC
Q 043087 392 MLLIVVVLNTLIT----GPIIASILRRNENYFA-HRNTSVESLDP 431 (754)
Q Consensus 392 ~lv~~~vls~~i~----~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 431 (754)
.+.+++=.-+.+. ||++|.+..+.+|..+ ++.|++.+...
T Consensus 150 ~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eK 194 (354)
T TIGR01109 150 AIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREK 194 (354)
T ss_pred HHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccch
No 144
>PRK09903 putative transporter YfdV; Provisional
Probab=57.73 E-value=2.7e+02 Score=29.85 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHh--hh
Q 043087 288 LFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVL--NL 365 (754)
Q Consensus 288 ~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l--~~ 365 (754)
..++.-+...+...|+-...+|+++....+... +. .....+.-.+.-++.++.....++++..+. ....++ .|
T Consensus 195 ~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~---~~-~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~-~v~vl~aa~P 269 (314)
T PRK09903 195 AWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS---AE-IAYNTFLKLILMPLALLLVGMACHLNSEHL-QMMVLAGALP 269 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---HH-HHHHHHHHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHccc
Confidence 355555678889999999999999865544221 11 112222333444555566666667764433 222322 24
Q ss_pred hhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhHHHHHHHHh
Q 043087 366 KGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLITGPIIASIL 412 (754)
Q Consensus 366 kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i~~pl~~~l~ 412 (754)
-+....+++ .+ .|. +++..+..++...+.++++-|+.-++.
T Consensus 270 ~a~~~~i~A---~~-y~~--~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 270 PAFSGIIIA---SR-FNV--YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHH---HH-Hcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 33 443 455555444444444445556655543
No 145
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=57.29 E-value=62 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.0
Q ss_pred cCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 606 GGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 606 GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
|.+-.+.|++.|...+...+..++++.+.+.
T Consensus 15 ~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~ 45 (154)
T COG0589 15 GSEAAEKALEEAVALAKRLGAPLILLVVIDP 45 (154)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEEEecc
Confidence 6777999999999999999999998888754
No 146
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=56.96 E-value=3e+02 Score=30.19 Aligned_cols=88 Identities=7% Similarity=0.016 Sum_probs=53.6
Q ss_pred hHhHHHHHHHhhccCCCCchH----HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043087 266 NSTITGFLLGVFFPRDGKTTR----TLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIG 341 (754)
Q Consensus 266 s~~lGaflaGl~i~~~~~~~~----~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~ 341 (754)
++.+=+.++|+++.--++... ..+.+.-+.+.+...|+=.+.+|+.+........ ..+......+++.++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~-~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSA-LGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHH
Confidence 455555556666652222222 4566666778888999999999998875433321 11333333455666666777
Q ss_pred HHHHHhhcCCChH
Q 043087 342 TLFVCHRLKIPRI 354 (754)
Q Consensus 342 ~~l~~~~~~~~~~ 354 (754)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776554
No 147
>PRK01658 holin-like protein; Validated
Probab=56.19 E-value=1.6e+02 Score=26.92 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhcCcccccccccccccccccchHHHHH-HHHHHHHHHHHH
Q 043087 18 VSTFVQISLMLVIAHIFNLIFKPLGQPG---PISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYR-VFAFISRILFMF 93 (754)
Q Consensus 18 ~~~l~~i~lil~~~~~~~~l~~rl~lP~---ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~-~l~~igli~llF 93 (754)
..++.|+.+++.+..+...+.+-+++|- ++|.++- +.-..++.++. +..+...+ .++.+.+.|.==
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL---~~~L~~~~ik~-------~~v~~~a~~Ll~~m~llFVPa 73 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLL---LLLLSFKILKL-------KWIELGAETLLAELPLFFIPS 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHHhCCcCH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888877777777777663 3333321 11111222322 11111111 145554222222
Q ss_pred HHhhccChhHHHhchhHHHHHHHHHHHHHHHHH
Q 043087 94 LIGLEMDTAYLRTNMDLAATIASGGLLVSFVFG 126 (754)
Q Consensus 94 ~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~ 126 (754)
.+|+=-..+.+++++-+.+..-+.+.++.+++.
T Consensus 74 ~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vt 106 (122)
T PRK01658 74 AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVT 106 (122)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666677666665555454444444433
No 148
>COG2985 Predicted permease [General function prediction only]
Probab=55.95 E-value=87 Score=35.41 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHhcCcccccccccccccccccchHHHHHHHHHHHHHHHHHHHhhccChh---HHHhchhHHHHHHHHHH
Q 043087 43 QPGPISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTA---YLRTNMDLAATIASGGL 119 (754)
Q Consensus 43 lP~ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~---~l~~~~k~~~~i~~~~~ 119 (754)
+-..-|.+++|++||- +|.+.+.-|..|+.. ...+.++|+++||=-+|++---+ .+-..+-..+..|..-.
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl~w~mP~~A----n~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPLTWFMPPGA----LLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCceEEEcChhH----HHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 4445678899999984 677776555556433 23366777555555555543322 22233344444455555
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhcccHHHHHHH
Q 043087 120 LVSFVFGIILTYISRFVLDIKDNTPAFSITITILLANSASPVVMRL 165 (754)
Q Consensus 120 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~Ts~~vv~~l 165 (754)
++|.+.++.++.++.++ ++. .++=+++=+.|.+|...-.
T Consensus 469 ~vp~i~~~llg~~v~km------n~~-~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 469 LVPVIIVFLLGRYVLKM------NWL-LLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHhc------cHH-HHhhHHhcCCCChHHHHHH
Confidence 67888888888887766 332 2333345577888766554
No 149
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=55.05 E-value=2.7e+02 Score=31.20 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=61.6
Q ss_pred HhccCCChhHHHHHHHHhcCccccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhchhHHHHHH
Q 043087 38 FKPLGQPGPISQMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYYRVFAFISRILFMFLIGLE-MDTAYLRTNMDLAATIA 115 (754)
Q Consensus 38 ~~rl~lP~ivg~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igli~llF~~Gle-~d~~~l~~~~k~~~~i~ 115 (754)
.+-+++|..+..|+.=+++-- +|.+++ .+ ++...+.+++..-..--+|+-+|+. +|++++.+......++-
T Consensus 266 ~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e-----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~ 338 (414)
T PF03390_consen 266 SKLIGIHAYAWMIILVAIVKA--FGLVPESLE-----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVI 338 (414)
T ss_pred HHhcCCcHHHHHHHHHHHHHH--hCcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHH
Confidence 334599999999988777763 566664 21 1222333444444445589999998 99999988765554443
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhcccCCCchHHHHHHHHHHhc
Q 043087 116 SGGLLVSFVF-GIILTYISRFVLDIKDNTPAFSITITILLAN 156 (754)
Q Consensus 116 ~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~ 156 (754)
.....+...+ ++.+++ +.+++ +...++.-|++++.
T Consensus 339 ~~~~Vl~~~~~a~~vG~-l~g~Y-----PvEsAItaGLC~an 374 (414)
T PF03390_consen 339 VLATVLGAVIGAFLVGK-LVGFY-----PVESAITAGLCMAN 374 (414)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCC-----hHHHHHHhhhcccC
Confidence 3333333333 333444 33543 44455655555553
No 150
>PRK01821 hypothetical protein; Provisional
Probab=54.96 E-value=1.8e+02 Score=27.08 Aligned_cols=27 Identities=11% Similarity=-0.110 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 043087 18 VSTFVQISLMLVIAHIFNLIFKPLGQP 44 (754)
Q Consensus 18 ~~~l~~i~lil~~~~~~~~l~~rl~lP 44 (754)
..++.|+.+++.+..+...+.+-+++|
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lp 35 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPIT 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356788888888887777777777765
No 151
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=53.94 E-value=21 Score=40.45 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCccEEEec---CCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCC
Q 043087 533 YEDVCNAAEDFRVTIIFLP---FHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKN 591 (754)
Q Consensus 533 ~edI~~~A~e~~a~LIilp---fhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg 591 (754)
-|+||.+|+++++|+|++| ||...+.+..+ +..++.+=+.-+..-||..=++-|.+
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L---~~~i~lLRryClgdkP~~le~lSD~s 99 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTL---HRCLELLRRYCLGDKPVQLEILSDQS 99 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHH---HHHHHHHHHHccCCCceeeEEecccc
Confidence 3689999999999999998 68766554332 22344455566788899999998875
No 152
>PRK10711 hypothetical protein; Provisional
Probab=52.25 E-value=1.5e+02 Score=30.37 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 324 ILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 324 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
|..++.-+.+..+.-++..++.++.++.+.. +. ..|.+|..-.=+-..+..+ .|-+ ..-.....+++-++-.++
T Consensus 88 ~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl~pkSVTtPIAm~is~~-iGG~-~sLta~~ViitGi~Ga~~ 161 (231)
T PRK10711 88 WKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASILPKSVTTPIAMAVGGS-IGGI-PAISAVCVIFVGILGAVF 161 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhhhhhHHHHHHHHHH-hCCc-HHHHHHHHHHHHHHHHHH
Confidence 5555555566666777888888899988755 33 3468999887777777777 6654 333333344455555556
Q ss_pred HHHHHHHH
Q 043087 404 TGPIIASI 411 (754)
Q Consensus 404 ~~pl~~~l 411 (754)
+|++.+++
T Consensus 162 g~~llk~~ 169 (231)
T PRK10711 162 GHTLLNAM 169 (231)
T ss_pred HHHHHHHc
Confidence 66776654
No 153
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=50.17 E-value=1.1e+02 Score=32.64 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHhcCccccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHH
Q 043087 49 QMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGI 127 (754)
Q Consensus 49 ~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~ 127 (754)
.++.|+++|+ .++ ++.+|.+. ..+-+.|+-|..|-.+|++.+.+.+-.-+++|+..+.++....+
T Consensus 177 P~iiG~iLGN-----LD~~~r~fl~~~---------~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 177 PIIIGMILGN-----LDPDFRKFLAPG---------VPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHhc-----CCHHHHHHHhcC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 5678888886 232 33333221 12223457899999999999999888877777766655544433
No 154
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=49.23 E-value=57 Score=34.10 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHHhh-CCCEEEEEEEeee
Q 043087 607 GADDREALALSKRIGK-NSNINLTVIRFLY 635 (754)
Q Consensus 607 G~ddreaL~~a~rma~-~~~v~ltv~r~~~ 635 (754)
.|.|+-|++.|.|+.+ ..+.++|++.+=+
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp 65 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGP 65 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecc
Confidence 6789999999999999 6899999999854
No 155
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=49.18 E-value=1.7e+02 Score=31.22 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHhcCccccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHH
Q 043087 49 QMLAGLVLSPSFLSQINK-IRSFFIQDLSAFYYRVFAFISRILFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGI 127 (754)
Q Consensus 49 ~ilaGillGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igli~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~ 127 (754)
.++.|+++|+ .++ +++++.+. ..+-..|+-|..|-.+|++.+.+.+-.-+.+|+....++....+
T Consensus 177 PlliG~ilGN-----LD~~~r~fl~~~---------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 177 PFLVGFALGN-----LDPELRDFFSKA---------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHhc-----CCHHHHHHhccC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 5678888885 232 33333221 11223457899999999999988877777777766655554444
Q ss_pred H
Q 043087 128 I 128 (754)
Q Consensus 128 ~ 128 (754)
.
T Consensus 243 ~ 243 (314)
T TIGR00793 243 L 243 (314)
T ss_pred H
Confidence 3
No 156
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=49.09 E-value=20 Score=30.08 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=37.2
Q ss_pred chHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCce
Q 043087 531 NMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSV 584 (754)
Q Consensus 531 ~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsV 584 (754)
.+++.+.+.|++.+++.|+.|-|.....+..+... ....++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCce
Confidence 78899999999999999999999866554333210 23467789999985
No 157
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=47.98 E-value=31 Score=38.56 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHhhccCCCceEEEEEEe---cChHHHHHHHHHhhcCCceeEEEEccCCCC
Q 043087 683 VFFEEFRLRYVTSGEVGLIERYV---NNGIETLQVLREIMDSIEFSLFIVGKGSYG 735 (754)
Q Consensus 683 ~~~~~f~~~~~~~~~v~y~e~~v---~~~~~~~~~~~~~~~~~~~dL~iVGr~~~~ 735 (754)
+.++..+.+... -+|.+....| +.+.|++++|+..+...++|.+|||||+|.
T Consensus 151 DIl~~~~rR~P~-~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 151 DILHTLSRRFPS-VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHhhCCC-CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 566666666543 3455555555 445689999999876656999999999874
No 158
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=45.51 E-value=36 Score=39.25 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHH---------HHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhh
Q 043087 295 SIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLF---------SCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNL 365 (754)
Q Consensus 295 ~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~---------~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~ 365 (754)
.+..+++|---.-.|.+++-..+..+ .+-+....+ +...+|..+. ....++++++|++.+|.+++.
T Consensus 100 ~ff~vLLPpiif~sgy~l~k~~fF~n---~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSA 174 (575)
T KOG1965|consen 100 LFFLVLLPPIIFNSGYSLKKKQFFRN---IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISA 174 (575)
T ss_pred HHHHHhhchhhhcccceechhhhhhh---hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcc
Confidence 45556666666678899987776654 222222111 2222232222 223468999999999998886
Q ss_pred hhhHHH
Q 043087 366 KGNFEL 371 (754)
Q Consensus 366 kG~~~l 371 (754)
---+..
T Consensus 175 TDPVtv 180 (575)
T KOG1965|consen 175 TDPVTV 180 (575)
T ss_pred cCchHH
Confidence 655554
No 159
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=45.08 E-value=3.1e+02 Score=28.98 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred HHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHh---hhhhhHHHHHHHH
Q 043087 301 LPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVL---NLKGNFELILIDV 376 (754)
Q Consensus 301 ~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l---~~kG~~~l~l~~~ 376 (754)
+.+-+...|++++..++......+.......+.-++.-++..+..+..++.+... ..|+.+ .|-|..+.+....
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~--~~glvL~~~~P~~~~s~v~t~~ 90 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPEL--AVGVLIVGCCPGGTASNVFTYL 90 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHheeeCCCchHHHHHHHH
Confidence 4444567888888887765322233444444556667777778887887776443 344332 2555555554444
No 160
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=44.01 E-value=3.8e+02 Score=27.55 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 324 ILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 324 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
|..++.-+++..+.-+++.+..++++|.+.. +. ..|.+|..-.=+-..++.+ .|-+ ..-.....+++-++-.++
T Consensus 93 ~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSVTtPIAm~is~~-iGG~-psLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 93 WWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAATTAIALPVSAG-IGGI-KEITSFAVIFNAVIIYAL 166 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhhhHHHHHHHHHH-hCCc-HHHHHHHHHHHHHHHHHH
Confidence 5555555666667777888888899988764 33 3468999888777777777 6655 443344445555555666
Q ss_pred HHHHHHHH
Q 043087 404 TGPIIASI 411 (754)
Q Consensus 404 ~~pl~~~l 411 (754)
++++++++
T Consensus 167 g~~llk~~ 174 (232)
T PRK04288 167 GAKFLKLF 174 (232)
T ss_pred HHHHHHHc
Confidence 67777664
No 161
>PRK10490 sensor protein KdpD; Provisional
Probab=42.51 E-value=1.4e+02 Score=37.15 Aligned_cols=36 Identities=3% Similarity=-0.040 Sum_probs=30.9
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+|-.-|+|..+..++.|.|||+.-++.++++++..+
T Consensus 254 LV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~ 289 (895)
T PRK10490 254 LLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETP 289 (895)
T ss_pred EEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 455556799999999999999999999999999753
No 162
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=42.19 E-value=5.5e+02 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHH
Q 043087 159 SPVVMRLIDELKFNTSELGRLASTTSLINEVGCIIY 194 (754)
Q Consensus 159 ~~vv~~lL~e~~~l~s~~g~l~ls~a~~~Di~~i~l 194 (754)
+|++..+.+..|..+.+.=-.+++++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 678888888888765444456889999999998764
No 163
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=40.16 E-value=4.2e+02 Score=27.05 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 90 LFMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYI 132 (754)
Q Consensus 90 ~llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~ 132 (754)
-.-|.+-+-=+++.+||+++......+.+..+..+.+..++.+
T Consensus 72 tVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~ 114 (230)
T COG1346 72 TVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKL 114 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777889999999887766666666666656555553
No 164
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=39.78 E-value=3.6e+02 Score=26.17 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=53.6
Q ss_pred hCchHhHHHHHHHhhccCCC---CchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh-hHHHHHHHHHHHHHHHH
Q 043087 263 LGYNSTITGFLLGVFFPRDG---KTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHY-QNILLVLLLLFSCIASR 338 (754)
Q Consensus 263 ~G~s~~lGaflaGl~i~~~~---~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~-~~~~~~~~~~~~~~~~K 338 (754)
+.+...-|+++.|+++.+-. |.. .-......++++.+-+|...+|++.-...+..-. ..+.. .++.++..+.-
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~-~~~~~~i~~~~ 97 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKL-LLLGVIITLVP 97 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH
Confidence 34445557788888877431 111 2334446788999999999999998754433210 22333 33334444455
Q ss_pred HHHHHHHHh-hcCCChHH
Q 043087 339 MIGTLFVCH-RLKIPRIK 355 (754)
Q Consensus 339 ~~~~~l~~~-~~~~~~~~ 355 (754)
.+.++..++ ++|++...
T Consensus 98 ~~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 98 LLIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHHcCCCHHH
Confidence 555666666 88988654
No 165
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=39.59 E-value=3.1e+02 Score=25.36 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhcCcccccccccccccccccchHHHH-HHHHHHHHHHHH
Q 043087 17 LVSTFVQISLMLVIAHIFNLIFKPLGQPG---PISQMLAGLVLSPSFLSQINKIRSFFIQDLSAFYY-RVFAFISRILFM 92 (754)
Q Consensus 17 l~~~l~~i~lil~~~~~~~~l~~rl~lP~---ivg~ilaGillGP~~lg~i~~~~~~f~~~~~~~~~-~~l~~igli~ll 92 (754)
...++.|+.+++.+..+..++.+-+++|- ++|.++- +.-..++.++. +..++-. ..+.++. ++
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLL---fllL~~~iv~l-------~wv~~~a~~Ll~~m~---ll 70 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLL---FLLLALKIVKL-------EWVERGATFLLRNMA---LL 70 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH---HHHHHhCCccH-------HHHHHHHHHHHHHHH---HH
Confidence 45688999999999888888888788774 3443322 11112333332 1111111 2255555 44
Q ss_pred H---HHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 93 F---LIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILTYIS 133 (754)
Q Consensus 93 F---~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l 133 (754)
| .+|+=-..+.+...+.+.+...+.+.++.+.....+..++
T Consensus 71 FVPa~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 71 FVPAGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HhcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4555446667777776666655555555554444333333
No 166
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=39.06 E-value=3.4e+02 Score=25.59 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=19.5
Q ss_pred HHHHHH--HhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043087 301 LPIYFG--YMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMI 340 (754)
Q Consensus 301 ~plFF~--~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~ 340 (754)
+|+||+ .+|....++.+.++ |+.+++.+++..+.=++
T Consensus 69 m~LfFVPagVGim~~~~ll~~~---~~~Il~~ivvSTllvl~ 107 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQY---PVQIIGVIIVATILLLA 107 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 578887 55555566666663 43333333334333333
No 167
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=33.35 E-value=6.5e+02 Score=27.22 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043087 267 STITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVC 346 (754)
Q Consensus 267 ~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~ 346 (754)
|.+-.|+.|++.. --...=+.=+.+-+.+.-.++---=.--|+.+.-..+... +......+++.++.-+++..+..
T Consensus 1 P~vLFF~LG~~A~-~~kSdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~---~~~~~~~~~lg~liPl~~~~iLr 76 (327)
T PF05982_consen 1 PVVLFFILGIIAA-LLKSDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTAL---LLPLLAAVLLGILIPLIAFPILR 76 (327)
T ss_pred CchHHHHHHHHHH-HHcCCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHH-HHhHHHHHHHHhccccccccccccc
Q 043087 347 HRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLN-TLITGPIIASILRRNENYFAHRNTS 425 (754)
Q Consensus 347 ~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls-~~i~~pl~~~l~~~~~~~~~~~~~~ 425 (754)
++.|++.-|+..++-.-...+.+.++.+...++ ..-+ +-|-|...+++.+=+ .++...++.+++.+.........++
T Consensus 77 ~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~-~~gi-~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~ 154 (327)
T PF05982_consen 77 RLGKLDRADAAAIAAHYGSVSAVTFAAALAFLE-SQGI-SYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASST 154 (327)
T ss_pred HccCCChhhHHHHHHHcCchHHHHHHHHHHHHH-HCCC-CccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCcc
Q ss_pred cccCCCCCc
Q 043087 426 VESLDPESE 434 (754)
Q Consensus 426 i~~~~~~~e 434 (754)
-+......+
T Consensus 155 ~~~~~~~~~ 163 (327)
T PF05982_consen 155 RVGAGSGHE 163 (327)
T ss_pred ccccccccc
No 168
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=33.28 E-value=6.9e+02 Score=27.49 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhh
Q 043087 246 VLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKH 320 (754)
Q Consensus 246 ~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~ 320 (754)
+++-+.++..++.+.- .-.+.+|.+.+|-.+.+. .. +++.+..+..+.++..-+.=.++|...+-+.+.+.
T Consensus 233 ilFpivv~i~~~ll~P--~a~pLig~Lm~GNllrEs-Gv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 233 FVFTIVAAMLLCLLLP--VASPLILSFFLGVAIKEA-QI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDP 303 (399)
T ss_pred hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHh-Cc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 4444444444444421 236789999999999843 33 45555444444555444445678888887766653
No 169
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.92 E-value=38 Score=38.33 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCceEEEEEEec---ChHHHHHHHHHhhcCCceeEEEEccCCCC
Q 043087 683 VFFEEFRLRYVTSGEVGLIERYVN---NGIETLQVLREIMDSIEFSLFIVGKGSYG 735 (754)
Q Consensus 683 ~~~~~f~~~~~~~~~v~y~e~~v~---~~~~~~~~~~~~~~~~~~dL~iVGr~~~~ 735 (754)
++++..+.++.. -++.+..-.|- ...+++++|+.++...++|.+|||||+|.
T Consensus 145 D~~~~~~~r~p~-~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 145 DILHILKRRDPS-LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred HHHHHHHhhCCC-ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 455555555421 24555555552 23467888888765434999999999874
No 170
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=30.33 E-value=7.4e+02 Score=26.92 Aligned_cols=249 Identities=19% Similarity=0.139 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcCccccc-cccc-ccccccccchHHHHHH--HHHHHHHHHHHHHhhc
Q 043087 23 QISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLSPSFLS-QINK-IRSFFIQDLSAFYYRV--FAFISRILFMFLIGLE 98 (754)
Q Consensus 23 ~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillGP~~lg-~i~~-~~~~f~~~~~~~~~~~--l~~igli~llF~~Gle 98 (754)
++..+++...+++.-.||---|.+.-.|-.|+++.+.-+. ..+. ... -.......+... -.++.-.++.+-+|--
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~-~~~g~l~~~~~~gi~~~l~P~LIF~GIGAm 82 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGG-GEIGGLQPIYYFGISNGLFPPLIFMGIGAM 82 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhccccccc-CCCChHHHHHHHhhhcchhhHHHHHHHhHH
Confidence 3444444444555555666678888888899888753322 1111 000 000111222211 2233334566678999
Q ss_pred cChhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHh---cccHHHHHHHHHhcCccCCc
Q 043087 99 MDTAYLRTNMDLAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLA---NSASPVVMRLIDELKFNTSE 175 (754)
Q Consensus 99 ~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls---~Ts~~vv~~lL~e~~~l~s~ 175 (754)
.|+.-+..+.|..+.-+..++-+ ...+..+. +.++ ....+..+|++=. +|+.=+.. ++.+.-
T Consensus 83 tDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~-~lGf------~~~eAAsIgIIGgADGPtsIf~s~------~LAp~L 147 (360)
T PF03977_consen 83 TDFGPLLANPKTLLLGAAAQFGI--FATFLGAI-LLGF------TPKEAASIGIIGGADGPTSIFVSS------KLAPHL 147 (360)
T ss_pred HhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHH-HhCC------CHHHhhHhhhcccCCCcHHHHHHH------hhhHHH
Confidence 99999999988865544444322 11222222 2344 3334444554433 34421111 222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHH----HHH--ccCCCccc-hhHHHH
Q 043087 176 LGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWF----ARW--NKDSKYVS-NAQVLF 248 (754)
Q Consensus 176 ~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l----~~~--~~~~~~~~-~~~~~~ 248 (754)
+|.+++++ ..-+ .++-.+-.|+++.+ .|+ .++.|+++ ...+.+
T Consensus 148 lgpIaVaA--------YsYM----------------------aLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiF 197 (360)
T PF03977_consen 148 LGPIAVAA--------YSYM----------------------ALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIF 197 (360)
T ss_pred HHHHHHHH--------HHHH----------------------HHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHH
Confidence 33322211 1111 11222333344332 222 12223332 223445
Q ss_pred HHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhh
Q 043087 249 LLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDGKTTRTLFKKLAYSIHNFVLPIYFGYMGFQFDIRDLLKH 320 (754)
Q Consensus 249 vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~~~~~~~~ek~~~~~~~~f~plFF~~~G~~~dl~~l~~~ 320 (754)
-+..+..++.+.- .-.+.+|.+.+|-.+.+ ....+++.+..+....++..-+.=..+|...+-+.+.+.
T Consensus 198 pivv~~~~~ll~P--~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~ 266 (360)
T PF03977_consen 198 PIVVTILVGLLLP--SAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNP 266 (360)
T ss_pred HHHHHHHHHHHcc--chHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCH
Confidence 4444444444421 23678999999999984 333334444444444444444445577877776666553
No 171
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.95 E-value=3.3e+02 Score=28.86 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=69.4
Q ss_pred hccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCC
Q 043087 513 TAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQ 592 (754)
Q Consensus 513 ~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~ 592 (754)
+...+-.|-.++... ..+-+.+.+.|++.++..||.-....-... ....+.....+..++++++|++=-|+|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~-----~~~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 13 ANQENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHS-----PLHLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccC-----ChHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 444555666777665 467889999999999999985443221111 1224555667888999999999999984
Q ss_pred C----------CCCCCcEEEEecc-CcchHHHHHHHHHHh---hCCCEEE
Q 043087 593 T----------GFQLPVAAMLFFG-GADDREALALSKRIG---KNSNINL 628 (754)
Q Consensus 593 ~----------~~~~~~~~~~f~G-G~ddreaL~~a~rma---~~~~v~l 628 (754)
+ |+. .+-+-+ ..+++|-++.++++. +.-++.+
T Consensus 86 ~~e~i~~Al~~G~t----sVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 86 TFEKIKEALEIGFT----SVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CHHHHHHHHHcCCC----EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3 221 344443 467889998888774 4445543
No 172
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=29.53 E-value=8.1e+02 Score=27.63 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccch
Q 043087 291 KLAYSIHNFVLPIYFGYMGFQFDI 314 (754)
Q Consensus 291 k~~~~~~~~f~plFF~~~G~~~dl 314 (754)
.+...+++.+|.+||..+|+.+.-
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhH
Confidence 455678999999999999999953
No 173
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=28.40 E-value=76 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.1
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEee
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFL 634 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~ 634 (754)
++++-||+|+-.++.++.+.+ ..+.+++++++.
T Consensus 2 lv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 2 LVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred EEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 477889999999999999987 335566777664
No 174
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.06 E-value=94 Score=35.18 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHhhccCCCceEEEEEEec---ChHHHHHHHHHhhcCCceeEEEEccCCCC
Q 043087 683 VFFEEFRLRYVTSGEVGLIERYVN---NGIETLQVLREIMDSIEFSLFIVGKGSYG 735 (754)
Q Consensus 683 ~~~~~f~~~~~~~~~v~y~e~~v~---~~~~~~~~~~~~~~~~~~dL~iVGr~~~~ 735 (754)
++++..+.++.. -++.+..-.|- ...+++++|+.....+ ||.+|+|||+|.
T Consensus 151 D~~~~~~~r~p~-~~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~Dviii~RGGGS 204 (438)
T PRK00286 151 DILTVLRRRFPL-VEVIIYPTLVQGEGAAASIVAAIERANARG-EDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHhcCCC-CeEEEecCcCcCccHHHHHHHHHHHhcCCC-CCEEEEecCCCC
Confidence 555555555432 35777777772 3357889999887643 899999999874
No 175
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.99 E-value=5.9e+02 Score=27.62 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHhhccChhHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 043087 91 FMFLIGLEMDTAYLRTNMDLAATIASGGLLVSFVFGIILT 130 (754)
Q Consensus 91 llF~~Gle~d~~~l~~~~k~~~~i~~~~~~l~~~~~~~~~ 130 (754)
.-|..|..+|++.+.+.+-....+++..++++..+++...
T Consensus 208 ~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~ 247 (326)
T PRK05274 208 FAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLAD 247 (326)
T ss_pred HHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHh
Confidence 5567899999998888888877777766666655444333
No 176
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=27.91 E-value=6.5e+02 Score=25.51 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHh
Q 043087 324 ILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDVEAGRSATWWSPMIHRMLLIVVVLNTLI 403 (754)
Q Consensus 324 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~~~ii~~~~~~~~lv~~~vls~~i 403 (754)
|..++..+++..+.-+..+++.++++|.+.. .. ..+.+|..-.-+-..+..+ .|-. ..-.-...+++-++-..+
T Consensus 77 ~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~--~Sl~pkSVTtpiAi~is~~-iGG~-~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 77 WIPILVGVLVGSLVSIFSAVLLARLLGLSPE--II--LSLAPKSVTTPIAIEISEQ-IGGI-PSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHHHHHhhHHHHHHHHHH-hCCh-HHHHHHHHHHHhhHHHHh
Confidence 5555556666667777888888899998754 33 3368898877666666666 6654 332333334444444555
Q ss_pred HHHHHHH
Q 043087 404 TGPIIAS 410 (754)
Q Consensus 404 ~~pl~~~ 410 (754)
+|++.++
T Consensus 151 g~~llk~ 157 (215)
T PF04172_consen 151 GPPLLKL 157 (215)
T ss_pred HHHHHhH
Confidence 6666665
No 177
>TIGR00930 2a30 K-Cl cotransporter.
Probab=26.72 E-value=1.4e+03 Score=28.88 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=60.3
Q ss_pred CCceeEEEEeecCCCcccchhh-hcccC-CCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHH
Q 043087 432 ESEFRILSCAYEPRHASGQLVL-SASFG-SSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAV 509 (754)
Q Consensus 432 ~~e~rIlic~~~~~~~~~~i~l-~~~~~-~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~ 509 (754)
+=..++|+...+|...+.++++ ..+.. ..+.+ +-|.++...+ .. +.+ .++.. +..
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~gl~i-~~~v~~~~~~-~~----~~~--------------~~~~~---~~~ 629 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTKGKGLMI-CGSVIQGPRL-EC----VKE--------------AQAAE---AKI 629 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhccCCcEEE-EEEEecCchh-hh----HHH--------------HHHHH---HHH
Confidence 4456899999999999999999 55443 34333 3355443211 00 000 01111 222
Q ss_pred HhhhccCceeEEEeEEeeCCCchHHHHHHHHhc-----cCccEEEecCCCCCcccc
Q 043087 510 DSFTAQTRIRISQVKIVNTFANMYEDVCNAAED-----FRVTIIFLPFHKHQRIDQ 560 (754)
Q Consensus 510 ~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e-----~~a~LIilpfhk~~~~dg 560 (754)
+.+-+.. .++.+..+-.-+++++++.++.+- -+.+.+++||.+.|+.+.
T Consensus 630 ~~~~~~~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 630 QTWLEKN--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHHHHh--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 2232222 233444343446889999999887 478999999998887543
No 178
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=26.41 E-value=1.8e+02 Score=31.11 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.2
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEe
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRF 633 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~ 633 (754)
++.|-||+|+--.|.++.+.-...+..+.++++
T Consensus 23 vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~I 55 (294)
T TIGR02039 23 VMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHV 55 (294)
T ss_pred EEEEecChHHHHHHHHHHHHhcccCCCeEEEEE
Confidence 688999999999999999886543566778877
No 179
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.55 E-value=2.8e+02 Score=30.66 Aligned_cols=25 Identities=28% Similarity=0.536 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchh
Q 043087 291 KLAYSIHNFVLPIYFGYMGFQFDIR 315 (754)
Q Consensus 291 k~~~~~~~~f~plFF~~~G~~~dl~ 315 (754)
.++..+++.++.+||..+|+.+.-.
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE 79 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKRE 79 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556789999999999999998743
No 180
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.43 E-value=15 Score=32.76 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=25.5
Q ss_pred EEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccchhhhhhhhccCC
Q 043087 437 ILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRRKAKLLYNQLEDG 488 (754)
Q Consensus 437 Ilic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~~~~~~~~~~~~~ 488 (754)
|++||+|+.+..-.-.|.. ++.++.+.+.+ .++.... .+..+++||..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELRE-EGVEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh-cccccccccchhh
Confidence 6899999887644444422 22344443333 3333333 4566777776553
No 181
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.94 E-value=2e+02 Score=25.45 Aligned_cols=36 Identities=3% Similarity=0.023 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHH
Q 043087 119 LLVSFVFGIILTYISRFVLDIKDNTPAFSITITILL 154 (754)
Q Consensus 119 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~l 154 (754)
+.+|.++|..++.++-..++.+++-....+++|++.
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 457888888888887655543222223344444443
No 182
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=23.88 E-value=1.5e+02 Score=32.50 Aligned_cols=113 Identities=13% Similarity=0.172 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH-
Q 043087 284 TTRTLFKKLAYSIHNFVLPIY-FGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAF- 361 (754)
Q Consensus 284 ~~~~~~ek~~~~~~~~f~plF-F~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~- 361 (754)
..++.++++ +..+|.|.. |.-.|=.+.+..+.+ |+++-+-+++.++.-.+..|+..+.++-|.+..-++-.
T Consensus 41 dark~ln~L---vf~lFtPcLiFs~La~svtl~~ii~----~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~ 113 (408)
T KOG2722|consen 41 DARKLLNKL---VFYLFTPCLIFSKLAQSVTLEKIIQ----WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIAC 113 (408)
T ss_pred HHHHHhhhe---eeeeecHHHHHHHHhhhccHHHHHH----HHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEE
Confidence 345555554 668899977 888999999998887 77777777778888888889999999988776532210
Q ss_pred -HhhhhhhHHHHHH-HHhhhccccccc--hhhHHHHHHHHHHHHHhH
Q 043087 362 -VLNLKGNFELILI-DVEAGRSATWWS--PMIHRMLLIVVVLNTLIT 404 (754)
Q Consensus 362 -~l~~kG~~~l~l~-~~~~~~~~ii~~--~~~~~~lv~~~vls~~i~ 404 (754)
....-|...+++. .+..+ .+.-.+ +.+-+-=+..+.+++.++
T Consensus 114 ~a~GN~gnlpL~Lv~alc~~-~~~Pfg~~~~c~s~Gi~Y~sf~~~lg 159 (408)
T KOG2722|consen 114 CAFGNSGNLPLILVPALCDE-DGIPFGNREKCASRGISYVSFSQQLG 159 (408)
T ss_pred eecCCcCCcHHHHhHHHhcc-cCCCCCChhhhhhcchhHHHHHHHhh
Confidence 1123355555443 44555 444313 334444455666666554
No 183
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=23.54 E-value=7.7e+02 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhcC
Q 043087 22 VQISLMLVIAHIFNLIFKPLGQPGPISQMLAGLVLS 57 (754)
Q Consensus 22 ~~i~lil~~~~~~~~l~~rl~lP~ivg~ilaGillG 57 (754)
..+..+++.+..+.+.++..|.|.-+...+.++-.+
T Consensus 258 ~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~~ 293 (388)
T TIGR00771 258 ANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGLG 293 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCC
Confidence 345556666777777777777777777766666333
No 184
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.87 E-value=3.8e+02 Score=28.06 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043087 336 ASRMIGTLFVCHRLKIPRIKAVLLAFVLNLKGNFELILIDV 376 (754)
Q Consensus 336 ~~K~~~~~l~~~~~~~~~~~~~~lg~~l~~kG~~~l~l~~~ 376 (754)
+.|-..+...+++.|++++++...+++|+.--.....+...
T Consensus 162 iSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~ 202 (259)
T PF02673_consen 162 ISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLEL 202 (259)
T ss_pred cChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999998655555444443
No 185
>COG3748 Predicted membrane protein [Function unknown]
Probab=21.00 E-value=7e+02 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 043087 296 IHNFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASR 338 (754)
Q Consensus 296 ~~~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K 338 (754)
.+-+-+|..|+.+.=+..+..=.. ..|.+..++.+.....|
T Consensus 225 NnylTLPVlF~MlSNHyp~~~gt~--fnWii~alv~l~gV~IR 265 (407)
T COG3748 225 NNYLTLPVLFTMLSNHYPLAFGTQ--FNWIIAALVFLMGVLIR 265 (407)
T ss_pred cceehHHHHHHHHhccCcccccCc--hhHHHHHHHHHHHHHHH
Confidence 345778999988776666543333 34766665555555444
No 186
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.68 E-value=5.4e+02 Score=33.27 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=7.9
Q ss_pred chHhHHHHHHHhhcc
Q 043087 265 YNSTITGFLLGVFFP 279 (754)
Q Consensus 265 ~s~~lGaflaGl~i~ 279 (754)
.-+.+||+++.+++.
T Consensus 63 l~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 63 LGGMPGAWLADTLFF 77 (1355)
T ss_pred ccchHHHHHHHHHHH
Confidence 334556666655444
Done!