Query 043087
Match_columns 754
No_of_seqs 373 out of 2524
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1E-23 3.6E-28 226.8 10.1 298 83-412 63-384 (388)
2 3mt0_A Uncharacterized protein 99.1 6.8E-10 2.3E-14 116.7 14.1 164 435-636 8-180 (290)
3 3loq_A Universal stress protei 99.0 3.2E-09 1.1E-13 111.8 12.8 182 435-635 23-208 (294)
4 3olq_A Universal stress protei 98.9 1.3E-08 4.5E-13 108.2 13.8 186 435-636 8-204 (319)
5 3cis_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 108.4 12.8 109 517-636 100-210 (309)
6 3ab8_A Putative uncharacterize 98.8 2.1E-08 7.3E-13 103.8 13.2 115 507-635 77-192 (268)
7 3hgm_A Universal stress protei 97.7 2E-05 6.8E-10 73.0 3.6 138 436-586 4-146 (147)
8 3zux_A Transporter, ASBTNM; tr 97.7 0.085 2.9E-06 55.9 33.6 44 335-378 238-282 (332)
9 3s3t_A Nucleotide-binding prot 97.7 4.5E-05 1.5E-09 70.5 5.8 133 436-587 7-145 (146)
10 3idf_A USP-like protein; unive 97.4 9.1E-05 3.1E-09 67.8 4.7 130 436-587 3-137 (138)
11 1tq8_A Hypothetical protein RV 97.4 0.00018 6.2E-09 68.3 6.7 135 434-587 17-156 (163)
12 3fg9_A Protein of universal st 97.4 7.1E-05 2.4E-09 70.2 3.7 134 435-587 16-155 (156)
13 3fdx_A Putative filament prote 97.4 0.00014 4.7E-09 66.9 5.3 133 436-587 3-142 (143)
14 3dlo_A Universal stress protei 97.3 0.00031 1E-08 66.1 6.8 127 435-587 25-154 (155)
15 2dum_A Hypothetical protein PH 97.3 0.00022 7.5E-09 67.8 5.7 52 530-587 103-154 (170)
16 3tnj_A Universal stress protei 97.1 0.00025 8.6E-09 65.8 3.9 135 436-587 8-145 (150)
17 1mjh_A Protein (ATP-binding do 97.1 0.001 3.6E-08 62.4 8.0 64 515-587 94-157 (162)
18 3idf_A USP-like protein; unive 97.0 0.0023 7.9E-08 58.2 9.5 36 601-636 5-41 (138)
19 1jmv_A USPA, universal stress 96.9 0.0025 8.6E-08 58.2 8.2 50 530-588 88-137 (141)
20 2z08_A Universal stress protei 96.8 0.0014 4.7E-08 59.7 5.8 52 530-587 85-136 (137)
21 3dlo_A Universal stress protei 96.7 0.0038 1.3E-07 58.4 8.1 36 601-636 28-64 (155)
22 2gm3_A Unknown protein; AT3G01 96.7 0.0025 8.6E-08 60.7 6.7 65 516-589 99-163 (175)
23 3hgm_A Universal stress protei 96.7 0.0022 7.6E-08 58.9 6.1 36 601-636 6-41 (147)
24 3s3t_A Nucleotide-binding prot 96.5 0.015 5E-07 53.2 10.6 36 601-636 9-44 (146)
25 2dum_A Hypothetical protein PH 96.4 0.0094 3.2E-07 56.3 9.2 36 601-636 9-44 (170)
26 3tnj_A Universal stress protei 96.4 0.0028 9.7E-08 58.5 5.4 36 601-636 10-45 (150)
27 1q77_A Hypothetical protein AQ 96.4 0.0069 2.3E-07 55.0 7.6 35 601-635 8-43 (138)
28 3fdx_A Putative filament prote 96.4 0.0054 1.8E-07 56.0 6.7 36 601-636 5-42 (143)
29 2z08_A Universal stress protei 96.1 0.0097 3.3E-07 53.9 7.0 36 601-636 6-41 (137)
30 1tq8_A Hypothetical protein RV 95.9 0.017 5.7E-07 54.4 8.0 35 601-636 21-57 (163)
31 3loq_A Universal stress protei 95.8 0.0078 2.7E-07 62.5 5.6 72 507-587 217-288 (294)
32 1mjh_A Protein (ATP-binding do 95.6 0.056 1.9E-06 50.3 10.2 36 601-636 9-44 (162)
33 3fg9_A Protein of universal st 95.6 0.023 7.9E-07 52.7 7.2 36 601-636 19-56 (156)
34 3mt0_A Uncharacterized protein 95.1 0.018 6.3E-07 59.5 5.2 52 530-587 223-274 (290)
35 1jmv_A USPA, universal stress 94.8 0.046 1.6E-06 49.5 6.4 35 601-635 6-40 (141)
36 1q77_A Hypothetical protein AQ 94.6 0.02 6.8E-07 51.8 3.6 43 530-587 95-137 (138)
37 3olq_A Universal stress protei 94.5 0.03 1E-06 58.6 5.1 55 531-591 253-307 (319)
38 3cis_A Uncharacterized protein 94.1 0.072 2.5E-06 55.5 7.1 35 601-635 23-57 (309)
39 3ab8_A Putative uncharacterize 94.1 0.12 4.1E-06 52.4 8.6 36 601-636 4-39 (268)
40 2gm3_A Unknown protein; AT3G01 91.4 0.84 2.9E-05 42.7 9.7 36 601-636 9-56 (175)
41 3zux_A Transporter, ASBTNM; tr 80.6 28 0.00094 36.4 14.9 79 298-376 46-125 (332)
42 4gx0_A TRKA domain protein; me 62.2 12 0.0004 42.2 7.2 56 431-488 124-182 (565)
43 1efp_B ETF, protein (electron 61.7 12 0.00041 37.5 6.3 94 607-746 36-141 (252)
44 1efv_B Electron transfer flavo 58.7 11 0.00039 37.7 5.6 26 607-633 39-66 (255)
45 1o97_C Electron transferring f 58.1 9 0.00031 38.7 4.7 27 607-633 36-64 (264)
46 3g40_A Na-K-CL cotransporter; 54.1 1.9E+02 0.0065 29.3 14.8 119 507-635 69-203 (294)
47 2l0e_A Sodium/hydrogen exchang 29.3 12 0.00041 24.8 0.1 25 147-171 6-30 (33)
48 3l9w_A Glutathione-regulated p 27.7 7.8 0.00027 41.9 -1.7 108 434-552 4-123 (413)
49 2k3c_A TMIX peptide; membrane 25.4 1.9 6.5E-05 28.7 -4.4 27 255-281 5-31 (33)
50 3fwz_A Inner membrane protein 22.2 19 0.00063 32.1 -0.0 54 432-487 5-60 (140)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=1e-23 Score=226.79 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHhhccChhHH----Hhchh--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHhc
Q 043087 83 FAFISRILFMFLIGLEMDTAYL----RTNMD--LAATIASGGLLVSFVFGIILTYISRFVLDIKDNTPAFSITITILLAN 156 (754)
Q Consensus 83 l~~igli~llF~~Gle~d~~~l----~~~~k--~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~l~i~~~ls~ 156 (754)
+-.-.+.++||.+|+|+|.+.+ ++.+| .....++.|+++|++++. .++. . .........+.+.
T Consensus 63 indglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~-----~~~~----~--~~~~~~gw~ip~A 131 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL-----AFNY----A--DPITREGWAIPAA 131 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG-----GGCC----S--STTHHHHTSSSSC
T ss_pred HhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHhc----C--ChhhhhhhHHHHH
Confidence 5556667899999999999877 55444 367789999999988732 2232 1 1113445556777
Q ss_pred ccHHHHHHHHHhcCc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043087 157 SASPVVMRLIDELKF-NTSELGRLASTTSLINEVGCIIYYSSFVTVLSSKNFANAIYSIILTALLIIINMYLAKWFARWN 235 (754)
Q Consensus 157 Ts~~vv~~lL~e~~~-l~s~~g~l~ls~a~~~Di~~i~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~l~~~~ 235 (754)
|+.+....++..++. .++..++.+++.+++||+.+|++++++.+ .+.+......... .++.. +..+|.
T Consensus 132 TdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~~~~~l~~~~~-----~~~~~----~~l~r~ 200 (388)
T 1zcd_A 132 TDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDLSMASLGVAAV-----AIAVL----AVLNLC 200 (388)
T ss_dssp CCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCCCHHHHHHHHH-----HHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHH-----HHHHH----HHHHHh
Confidence 999899999999765 55667799999999999999999988853 1112111111111 11111 222222
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHhhccCCC----CchHHHHHHHHHHHHHHHHHHH-HHHhhc
Q 043087 236 KDSKYVSNAQVLFLLVLVVSLAFSIEVLGYNSTITGFLLGVFFPRDG----KTTRTLFKKLAYSIHNFVLPIY-FGYMGF 310 (754)
Q Consensus 236 ~~~~~~~~~~~~~vl~~~l~~~~~a~~~G~s~~lGaflaGl~i~~~~----~~~~~~~ek~~~~~~~~f~plF-F~~~G~ 310 (754)
.. +....+.++ . +.+.+.++..|+|+++|+|++|+++|+.+ +..++..++++.+...+++|+| |+..|.
T Consensus 201 ~v----~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv 274 (388)
T 1zcd_A 201 GA----RRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGV 274 (388)
T ss_dssp TC----CCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCC
T ss_pred cc----hhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence 21 223233333 2 24456779999999999999999999642 3356777888888888999999 999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHHHhhhc
Q 043087 311 QFDIRDLLKHYQNILLVLLLLFSCIASRMIGTL----FVCHRL------KIPRIKAVLLAFVLNLKGNFELILIDVEAGR 380 (754)
Q Consensus 311 ~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~----l~~~~~------~~~~~~~~~lg~~l~~kG~~~l~l~~~~~~~ 380 (754)
++|....... .. .....+++..+++|+++++ +..|+. |++++|...+|++++.++++++++++++++
T Consensus 275 ~l~~~~~~~l-~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~- 351 (388)
T 1zcd_A 275 SLQGVTLDGL-TS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFG- 351 (388)
T ss_dssp CCSSSCCCTH-HH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHST-
T ss_pred eecccchhhc-cC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhcc-
Confidence 9998532211 11 1223455667899998844 444444 999999999999999999999999999998
Q ss_pred ccc--ccchhhHHHHHHHHHHHHHhHHHHHHHHh
Q 043087 381 SAT--WWSPMIHRMLLIVVVLNTLITGPIIASIL 412 (754)
Q Consensus 381 ~~i--i~~~~~~~~lv~~~vls~~i~~pl~~~l~ 412 (754)
.+. + .++.+..+++++++++++++.++++.+
T Consensus 352 ~~~~~~-~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 352 SVDPEL-INWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp TSSCSS-HHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred CCchhh-HhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 765 4 466788888999999888877776543
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.09 E-value=6.8e-10 Score=116.74 Aligned_cols=164 Identities=12% Similarity=0.032 Sum_probs=108.7
Q ss_pred eeEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhh
Q 043087 435 FRILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSF 512 (754)
Q Consensus 435 ~rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~ 512 (754)
-+||+|..+..+....+.. ...+.....++.+|.++ . + ..++.+ +.+.+.
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~-~--------------~----------~~~~~l---~~~~~~ 59 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEK-R--------------R----------DHSAAL---NDLAQE 59 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECS-S--------------S----------CCHHHH---HHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeC-c--------------H----------HHHHHH---HHHHHH
Confidence 3799999887776655555 32222344566677654 1 0 012222 333333
Q ss_pred hccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCC
Q 043087 513 TAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQ 592 (754)
Q Consensus 513 ~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~ 592 (754)
....++.++...... .+..+.|++.|++..+|||++|.|++...++.+ +++..+++++++||+|-+.-....
T Consensus 60 ~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 60 LREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTARP 131 (290)
T ss_dssp HHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCSC
T ss_pred HhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCCC
Confidence 334556666655433 467899999999999999999999876554433 445788999999999877531111
Q ss_pred CCCCCCcEEEEeccCcc-------hHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 593 TGFQLPVAAMLFFGGAD-------DREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 593 ~~~~~~~~~~~f~GG~d-------dreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
...+++ ++.+-|+++ .+.|+++|.++|+..+.+++++|+.+.
T Consensus 132 ~~~~~I--lva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 180 (290)
T 3mt0_A 132 WTGGKI--LAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPS 180 (290)
T ss_dssp STTCEE--EEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-
T ss_pred CCCCeE--EEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 122221 566666676 799999999999999999999999864
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.96 E-value=3.2e-09 Score=111.80 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=112.8
Q ss_pred eeEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhh
Q 043087 435 FRILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSF 512 (754)
Q Consensus 435 ~rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~ 512 (754)
-|||+|.-+..+....+.. +..+.....++.+|.++.... .. ...+ .......+......++.+ +.+.+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~l---~~~~~~ 94 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKL-ST--VSGG--IDIDHYIDEMSEKAEEVL---PEVAQK 94 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC--------C--CCTTHHHHHHHHHHHHHH---HHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccc-cc--cccc--ccHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3899999888776666666 444445567788887765432 10 0000 000000000001122333 444444
Q ss_pred hccCceeEEE-eEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCC
Q 043087 513 TAQTRIRISQ-VKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKN 591 (754)
Q Consensus 513 ~~~~~V~v~~-~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg 591 (754)
....++.++. ..... .+..+.| .+++.++|+|++|.|++....+.+ ++++.+++++++||||-|.-+ +
T Consensus 95 ~~~~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~-~ 163 (294)
T 3loq_A 95 IEAAGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFKH-D 163 (294)
T ss_dssp HHHTTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEECC-C
T ss_pred HHHcCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCcccccee------eccHHHHHHhcCCCCEEEecC-c
Confidence 4445677665 33201 3567888 999999999999998765443322 344788999999999877532 2
Q ss_pred CCCCCCCcE-EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 592 QTGFQLPVA-AMLFFGGADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 592 ~~~~~~~~~-~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
........+ ++.+-|.+++++|+++|.++++..+.+++++++.+
T Consensus 164 ~~~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 208 (294)
T 3loq_A 164 MVVNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSE 208 (294)
T ss_dssp TTTTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred cccCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEcc
Confidence 211012222 67777788999999999999999999999999975
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.87 E-value=1.3e-08 Score=108.20 Aligned_cols=186 Identities=10% Similarity=0.064 Sum_probs=110.1
Q ss_pred eeEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhh
Q 043087 435 FRILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSF 512 (754)
Q Consensus 435 ~rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~ 512 (754)
-+||++.-+..+....+.. ...+.....++.+|.++-...... .....+..+.. ........++.+ +.+...
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l---~~~~~~ 81 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT-TLLSPDERNAM--RKGVINQKTAWI---KQQARY 81 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT-TTSCHHHHHHH--HHHHHHHHHHHH---HHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc-cccChhhHHHH--HHHHHHHHHHHH---HHHHHH
Confidence 3799999888776665555 333334456778887642111000 00000000000 000000112222 222222
Q ss_pred hccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCC
Q 043087 513 TAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQ 592 (754)
Q Consensus 513 ~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~ 592 (754)
....++.++...... .+..+.|++.|++..+|||++|.|++...++.+ +++...+|++++||+|-|.-++..
T Consensus 82 ~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~ 153 (319)
T 3olq_A 82 YLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDKEW 153 (319)
T ss_dssp HHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESSCC
T ss_pred HhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCccc
Confidence 234567776665533 567899999999999999999999876554433 344788999999999887643322
Q ss_pred CCCCCCcEEEEeccCcc-------hHHHHHHHHHHhhCC--CEEEEEEEeeec
Q 043087 593 TGFQLPVAAMLFFGGAD-------DREALALSKRIGKNS--NINLTVIRFLYA 636 (754)
Q Consensus 593 ~~~~~~~~~~~f~GG~d-------dreaL~~a~rma~~~--~v~ltv~r~~~~ 636 (754)
...++. ++.+-|.++ ++.|+++|.++++.. +.+++++|+.+.
T Consensus 154 ~~~~~I--lva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~ 204 (319)
T 3olq_A 154 PEYGTI--VVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPV 204 (319)
T ss_dssp CTTCEE--EEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECC
T ss_pred ccCCeE--EEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecC
Confidence 212221 555555563 499999999999876 999999999864
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.86 E-value=1.1e-08 Score=108.40 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=80.0
Q ss_pred ceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCCCCC-C
Q 043087 517 RIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKNQTG-F 595 (754)
Q Consensus 517 ~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg~~~-~ 595 (754)
++.++..... .+..+.|++.|+ ++|||++|.|++....+.+ ++++.++|++++||+|-|.-.+.... .
T Consensus 100 ~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~~~~~ 168 (309)
T 3cis_A 100 PPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIHDEDSVMPH 168 (309)
T ss_dssp CSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEECTTCCCSCS
T ss_pred CceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEcCCcccCCC
Confidence 5666655443 467899999997 8999999999876554333 44578999999999987753332110 1
Q ss_pred CCCcE-EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 596 QLPVA-AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 596 ~~~~~-~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
....+ ++.+-|++.++.|+++|.++|+..+.+++++|+.+.
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 210 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSD 210 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCS
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeec
Confidence 11112 666667888999999999999999999999999753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.82 E-value=2.1e-08 Score=103.79 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=82.5
Q ss_pred HHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCC-cccccccccchhhhHHHHHHhccCCCceE
Q 043087 507 EAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQ-RIDQRLENSKEGYRTTNQKILRHAPCSVG 585 (754)
Q Consensus 507 ~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~-~~dg~~~~~~~~~r~~n~~Vl~~apCsVg 585 (754)
+.+.+.....++.++..... .+..+.|++. +.++|+|++|.|++. ...+.+ ++++.++|++++||||-
T Consensus 77 ~~~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 77 ERVRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHhCCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEE
Confidence 33333333345666665543 3567899998 889999999999865 544333 44578999999999986
Q ss_pred EEecCCCCCCCCCcEEEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 586 VLVHKNQTGFQLPVAAMLFFGGADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 586 Ilvdrg~~~~~~~~~~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
|. .++....++. ++.+-|+++++.|+++|.++++..+.+++++|+.+
T Consensus 146 vv-~~~~~~~~~i--lv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~ 192 (268)
T 3ab8_A 146 LA-PGEPVELEGA--LLGYDASESAVRALHALAPLARALGLGVRVVSVHE 192 (268)
T ss_dssp EE-CSSCCCCCEE--EEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECS
T ss_pred EE-CCCCCCCCEE--EEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcC
Confidence 64 3222222221 66666788899999999999998899999999974
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.67 E-value=2e-05 Score=73.01 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=75.8
Q ss_pred eEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhh
Q 043087 436 RILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFT 513 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~ 513 (754)
|||++.-+.++....+.. +..+...-.++.+|.++......+... .......+..........++.+ +.+.+..
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~ 79 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLS-MARPEQLDIPDDALKDYATEIA---VQAKTRA 79 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBS-SCCCGGGCCCTTHHHHHHHHHH---HHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc-ccChhhhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 688888766554444444 332323456778887764321010000 0000000000000001122233 4444443
Q ss_pred ccCceeE---EEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEE
Q 043087 514 AQTRIRI---SQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGV 586 (754)
Q Consensus 514 ~~~~V~v---~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgI 586 (754)
...++.+ +..... .+..+.|++.|++.++|||++|.|++....+.+ ++++.++|++++||||-|
T Consensus 80 ~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 80 TELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred HhcCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 3344444 444333 367899999999999999999999876654433 445789999999999865
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.67 E-value=0.085 Score=55.86 Aligned_cols=44 Identities=9% Similarity=0.032 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHh-hhhhhHHHHHHHHhh
Q 043087 335 IASRMIGTLFVCHRLKIPRIKAVLLAFVL-NLKGNFELILIDVEA 378 (754)
Q Consensus 335 ~~~K~~~~~l~~~~~~~~~~~~~~lg~~l-~~kG~~~l~l~~~~~ 378 (754)
.+.-+...+..++.+|.+.+|+..+++-. +++....+.++...+
T Consensus 238 ~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 238 NGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 33445566777888999999999998843 455667777776655
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.65 E-value=4.5e-05 Score=70.52 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=79.3
Q ss_pred eEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhh--hhhhccCCCCCCCCcccCCCchhhHhHHHHh
Q 043087 436 RILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKL--LYNQLEDGGQYSDEEDYGGNDVLEINEAVDS 511 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~ 511 (754)
|||++.-+..+....+.. +..+...-.++.+|.++.... ..... ...+..+ ......++.+ +.+.+
T Consensus 7 ~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~l---~~~~~ 76 (146)
T 3s3t_A 7 NILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAY-HTPALDPVLSELLD------AEAAHAKDAM---RQRQQ 76 (146)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCC-CCGGGHHHHHHHHH------HHHHHHHHHH---HHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccc-cccccccccHHHHH------HHHHHHHHHH---HHHHH
Confidence 789988776654444444 223223456778887765433 11100 0000000 0001123333 44444
Q ss_pred hhccCce-eEEEeEEeeCCCchHHHHHH-HHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 512 FTAQTRI-RISQVKIVNTFANMYEDVCN-AAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 512 ~~~~~~V-~v~~~~~vs~~~~m~edI~~-~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.....++ .++...... +..+.|++ .|++.++|||++|-|++....+.+ ++++.++|++++||||-|.
T Consensus 77 ~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred HHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 4444456 666555544 56799999 999999999999999876654433 4457899999999998664
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.44 E-value=9.1e-05 Score=67.77 Aligned_cols=130 Identities=11% Similarity=0.080 Sum_probs=78.9
Q ss_pred eEEEEeecCCCcccchhh--hcc-cCCCCcceeeeeeccccccchhhhhh-hhccCCCCCCCCcc-cCCCchhhHhHHHH
Q 043087 436 RILSCAYEPRHASGQLVL--SAS-FGSSISPYLMHLVELPKRRRKAKLLY-NQLEDGGQYSDEED-YGGNDVLEINEAVD 510 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~-~~~p~~v~~l~lVel~~r~~~~~~~~-~~~~~~~~~~~~~~-~~~~~il~i~~a~~ 510 (754)
|||++.-+.++....+.. +.. +.....++.+|.++.... ....... .+.. .... ...++.+ +.+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~l---~~~~ 72 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFML-YGEAVLAAYDEI------EMKEEEKAKLLT---QKFS 72 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCC-CHHHHHHHHHHH------HHHHHHHHHHHH---HHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCc-ccccccCcHHHH------HHHHHHHHHHHH---HHHH
Confidence 688888776655555555 444 445566778888766543 1110000 0000 0000 1122333 4444
Q ss_pred hhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 511 SFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 511 ~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
+.....++.++...... +..+.|++.|+ ++|||++|.|++...++.+ ++ +.++|++++||||-|.
T Consensus 73 ~~~~~~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs------~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-AS------HQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHTTTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CC------TTCHHHHHCSSCEEEE
T ss_pred HHHHHCCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc------HHHHHHhcCCCCEEEe
Confidence 44444566666555443 57899999999 9999999999877665555 44 5779999999998664
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.43 E-value=0.00018 Score=68.25 Aligned_cols=135 Identities=11% Similarity=0.087 Sum_probs=75.9
Q ss_pred ceeEEEEeecCCCcccchhh--hcccCCCCcceee--eeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHH
Q 043087 434 EFRILSCAYEPRHASGQLVL--SASFGSSISPYLM--HLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAV 509 (754)
Q Consensus 434 e~rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l--~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~ 509 (754)
--|||+|+-+.......+.. +..+ ..-.++.+ |.++......+.. .. ..+ .........++.+ +.+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~--~~---~~~-~~~~~~~~~~~~l---~~~ 86 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI--LK---DES-YKVTGTAPIYEIL---HDA 86 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------------CCTHHHHH---HHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc--cc---cHH-HHHHHHHHHHHHH---HHH
Confidence 34799998776655444444 3344 45566777 6654322100000 00 000 0000111223333 444
Q ss_pred HhhhccCcee-EEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 510 DSFTAQTRIR-ISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 510 ~~~~~~~~V~-v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+.....++. ++..... .+..+.|++.|++.++|||++|.|++....+.+ ++++.++|++++||||-|.
T Consensus 87 ~~~~~~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 87 KERAHNAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRL------LGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHHTTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH------TBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCccccee------eccHHHHHHHhCCCCEEEE
Confidence 4444444565 6655443 356899999999999999999999876554333 3347899999999998775
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.42 E-value=7.1e-05 Score=70.20 Aligned_cols=134 Identities=11% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeEEEEee--cCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHH
Q 043087 435 FRILSCAY--EPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVD 510 (754)
Q Consensus 435 ~rIlic~~--~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~ 510 (754)
-|||+|.- +.......+.. +..+...-.++.+|.++.... ........+.. .......++.+ +.+.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l---~~~~ 85 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDI-NIFDSLTPSKI------QAKRKHVEDVV---AEYV 85 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCT-TCCCSSHHHHH------HHHHHHHHHHH---HHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCc-cccccCCHHHH------HHHHHHHHHHH---HHHH
Confidence 36999987 76655444444 333324456778888765432 11000000000 00001122233 4443
Q ss_pred hhhccCce-eEEEeEEeeCCCchHHHHHHH-HhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 511 SFTAQTRI-RISQVKIVNTFANMYEDVCNA-AEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 511 ~~~~~~~V-~v~~~~~vs~~~~m~edI~~~-A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
+.....++ .++.....+ .+..+.|++. |++.++|||++|.|++...+ .+. +++.++|++++||||-|+
T Consensus 86 ~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~------Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 86 QLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIA------GAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSC------SCHHHHHHHHCSSEEEEE
T ss_pred HHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eee------cchHHHHHHhCCCCEEEe
Confidence 33333345 355555542 3667999999 99999999999999876654 333 337899999999998664
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.39 E-value=0.00014 Score=66.90 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=75.0
Q ss_pred eEEEEeecCCC--cccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHh
Q 043087 436 RILSCAYEPRH--ASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDS 511 (754)
Q Consensus 436 rIlic~~~~~~--~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~ 511 (754)
|||+|+-+..+ ....+.. +..+...-.++.+|.++......+....+. ... .......++.. +.+++
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~---~~l~~ 73 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYT---AEL---PGMDELREGSE---TQLKE 73 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------------CHHHHHHHHH---HHHHH
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccccccccc---chh---hhHHHHHHHHH---HHHHH
Confidence 78999877766 5444444 333324456778887765432000000000 000 00001112233 55555
Q ss_pred hhccC---ceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 512 FTAQT---RIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 512 ~~~~~---~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
+.... .+.++...... +..+.|++.|++.++|||+||-|+ ....+. .++++.++|++++||||-|+
T Consensus 74 ~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEEe
Confidence 54433 24455554443 678999999999999999999985 433332 34558999999999998664
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.32 E-value=0.00031 Score=66.05 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=76.7
Q ss_pred eeEEEEeec-CCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHh
Q 043087 435 FRILSCAYE-PRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDS 511 (754)
Q Consensus 435 ~rIlic~~~-~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~ 511 (754)
-+||+|.-+ .......+.. +..+.....++.+|.++.... . .. ......++.+ +.+.+
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~-----~~----------~~~~~~~~~l---~~~~~ 85 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-T-----KD----------EDIIEAKETL---SWAVS 85 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-S-----CH----------HHHHHHHHHH---HHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-c-----cH----------HHHHHHHHHH---HHHHH
Confidence 379999877 5544444444 223323446677887754321 0 00 0001122333 44444
Q ss_pred hhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 512 FTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 512 ~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.....++.++....+. ..+..+.|++.|++.++|||++|-|++....+.+ ++++.++|++++||||-|+
T Consensus 86 ~~~~~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 86 IIRKEGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHTTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred HHHhcCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 4334445555444332 2467899999999999999999999876554433 4558999999999998664
No 15
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.00022 Score=67.83 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=42.1
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+..+.|++.|++.++|||++|.|++......+ ++++.++|++++||||-|+
T Consensus 103 g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 103 GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEEEE
T ss_pred CChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEEEE
Confidence 367899999999999999999999876544333 4558999999999998876
No 16
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.13 E-value=0.00025 Score=65.78 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=68.0
Q ss_pred eEEEEeecCCCcccchhh--hcccCCCCcceeeeeeccccccchhhhhhhhccCCCCCCCCcccCCCchhhHhHHHHhhh
Q 043087 436 RILSCAYEPRHASGQLVL--SASFGSSISPYLMHLVELPKRRRKAKLLYNQLEDGGQYSDEEDYGGNDVLEINEAVDSFT 513 (754)
Q Consensus 436 rIlic~~~~~~~~~~i~l--~~~~~~p~~v~~l~lVel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i~~a~~~~~ 513 (754)
|||+|.-+..+....+.. +..+...-.++.+|.++.... .. ..++....... ........++.. +.++.+.
T Consensus 8 ~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~---~~l~~~~ 80 (150)
T 3tnj_A 8 HILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPM-PD--TPYGTAIPLDT-ETTYDAMLDVEK---QKLSQIG 80 (150)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC-----------CTTCCCSSS-CCCHHHHHHHHH---HHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccc-cc--cccccccCcCH-HHHHHHHHHHHH---HHHHHHH
Confidence 699998877766555554 333323456777887654321 00 01111100000 000000011111 3334333
Q ss_pred ccCcee-EEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 514 AQTRIR-ISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 514 ~~~~V~-v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
...++. ++..... .+..+.|++.|++.++|||++|.|++.... .+.+ ++.++|++++||||-|.
T Consensus 81 ~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~G------s~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 81 NTLGIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLG------STANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHTCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC---------CC------CHHHHHHHHCSSEEEEE
T ss_pred HHcCCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEec------chHHHHHHhCCCCEEEE
Confidence 222222 1222222 366799999999999999999999876554 4333 37889999999998775
No 17
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.09 E-value=0.001 Score=62.43 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=49.6
Q ss_pred cCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 515 QTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 515 ~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
..++.++..... .+..+.|++.|++.++|+|++|.|++....+.+ ++++.++|++++||||-|.
T Consensus 94 ~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 94 DVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSCEEEE
T ss_pred HcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCCCEEEE
Confidence 345666655443 367899999999999999999999876554433 4458999999999998775
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.03 E-value=0.0023 Score=58.17 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=32.2
Q ss_pred EEEeccCcchHHHHHHHHHHh-hCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIG-KNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma-~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++.+.|+++|.++| +..+.+++++|+.+.
T Consensus 5 Lv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~ 41 (138)
T 3idf_A 5 LFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPE 41 (138)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Confidence 566667888999999999999 999999999999864
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=96.87 E-value=0.0025 Score=58.17 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=40.7
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEe
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLV 588 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlv 588 (754)
.+..+.|++.|++.++|||++|.| +...+. ++++.++|++++||||-|.-
T Consensus 88 g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--------lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 88 GDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--------LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp ECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--------HHHHHHHHHTTCCSEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--------hcchHHHHHhcCCCCEEEee
Confidence 356799999999999999999988 543321 35688999999999988763
No 20
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=96.80 E-value=0.0014 Score=59.73 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=42.8
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+..+.|++.|++.++|+|++|.|++....+.+ ++++.++|++++||||-|.
T Consensus 85 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 85 GVPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 467899999999999999999999876554332 4558999999999998764
No 21
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=96.69 E-value=0.0038 Score=58.44 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=32.1
Q ss_pred EEEecc-CcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFG-GADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~G-G~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-| .+.++.|+++|.++|+..+.+++++++.+.
T Consensus 28 Lv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 64 (155)
T 3dlo_A 28 VVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPG 64 (155)
T ss_dssp EEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcC
Confidence 666777 799999999999999999999999999863
No 22
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=96.66 E-value=0.0025 Score=60.70 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=45.9
Q ss_pred CceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEec
Q 043087 516 TRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVH 589 (754)
Q Consensus 516 ~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvd 589 (754)
.++.++..... .+..+.|++.|++.++|||+||-|++....+.+ ++++.++|++++||+|-|+-.
T Consensus 99 ~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~vl~~a~~pVlvv~~ 163 (175)
T 2gm3_A 99 IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAFCVKHAECPVMTIKR 163 (175)
T ss_dssp HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHCSSCEEEEEC
T ss_pred CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHHHHhCCCCCEEEEcC
Confidence 45666554443 356899999999999999999999876554433 344789999999999888643
No 23
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=96.65 E-value=0.0022 Score=58.86 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=32.3
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++.+.|+++|.++|+..+.+++++|+.+.
T Consensus 6 Lv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~ 41 (147)
T 3hgm_A 6 MVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKH 41 (147)
T ss_dssp EEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 566667889999999999999999999999999865
No 24
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=96.49 E-value=0.015 Score=53.23 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=32.6
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
++++-|.++.+.|+++|.++|+..+.+++++|+.+.
T Consensus 9 Lv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~ 44 (146)
T 3s3t_A 9 LVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDD 44 (146)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 667778899999999999999999999999999874
No 25
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0094 Score=56.29 Aligned_cols=36 Identities=6% Similarity=-0.071 Sum_probs=32.2
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++++.|+++|.++|+..+.+++++|+++.
T Consensus 9 Lv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~ 44 (170)
T 2dum_A 9 LFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDE 44 (170)
T ss_dssp EEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEET
T ss_pred EEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 566667888999999999999999999999999864
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=96.44 E-value=0.0028 Score=58.49 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.1
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++.+.|+++|.++|+..+.+++++|+.+.
T Consensus 10 Lv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 45 (150)
T 3tnj_A 10 LLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDN 45 (150)
T ss_dssp EEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC-
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcC
Confidence 667777899999999999999999999999999864
No 27
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.40 E-value=0.0069 Score=54.99 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=31.7
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEee-e
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFL-Y 635 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~-~ 635 (754)
+++.-|.++++.|+++|.++|+..+.+++++|+. +
T Consensus 8 Lv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 8 LVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp EEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred EEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5666778899999999999999999999999998 5
No 28
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=96.35 E-value=0.0054 Score=55.97 Aligned_cols=36 Identities=0% Similarity=-0.013 Sum_probs=31.9
Q ss_pred EEEeccCcc--hHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGAD--DREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~d--dreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++ .+.|+++|.++|+..+.+++++|+.+.
T Consensus 5 Lv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (143)
T 3fdx_A 5 LVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPS 42 (143)
T ss_dssp EEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred EEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence 566667788 899999999999999999999999864
No 29
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=96.12 E-value=0.0097 Score=53.94 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=31.7
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.++++.|+++|.++|+..+.+++++|+.++
T Consensus 6 Lv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 41 (137)
T 2z08_A 6 LLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEP 41 (137)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecC
Confidence 566667888999999999999999999999999863
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=95.95 E-value=0.017 Score=54.42 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=29.8
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEE--Eeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVI--RFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~--r~~~~ 636 (754)
++++-|.+..+.|+++|.++|+ .+.+++++ ++++.
T Consensus 21 Lv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~ 57 (163)
T 1tq8_A 21 VVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQH 57 (163)
T ss_dssp EEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--
T ss_pred EEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccC
Confidence 6666678899999999999999 99999999 88753
No 31
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.0078 Score=62.48 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEE
Q 043087 507 EAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGV 586 (754)
Q Consensus 507 ~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgI 586 (754)
+.++++....++.++....- .+..+.|.+.|++.++|||++|-+++....+. .++++.+++++++||||-|
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLv 287 (294)
T 3loq_A 217 RVMEEVIGAEGIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFV 287 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHcCCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEE
Confidence 34444433344555543332 47789999999999999999999987665433 3445789999999999877
Q ss_pred E
Q 043087 587 L 587 (754)
Q Consensus 587 l 587 (754)
+
T Consensus 288 v 288 (294)
T 3loq_A 288 C 288 (294)
T ss_dssp E
T ss_pred E
Confidence 6
No 32
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=95.62 E-value=0.056 Score=50.26 Aligned_cols=36 Identities=8% Similarity=-0.095 Sum_probs=32.4
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
++++-|.++.+.|+++|.++|+..+.+++++|++++
T Consensus 9 Lv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 44 (162)
T 1mjh_A 9 LYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDE 44 (162)
T ss_dssp EEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEG
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecC
Confidence 666777889999999999999999999999999874
No 33
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=95.56 E-value=0.023 Score=52.66 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=32.3
Q ss_pred EEEec--cCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFF--GGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~--GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.- |.++.+.|+++|.++|+..+.+++++|+++.
T Consensus 19 Lv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 56 (156)
T 3fg9_A 19 LLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLES 56 (156)
T ss_dssp EEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeC
Confidence 66666 7899999999999999999999999999864
No 34
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=95.06 E-value=0.018 Score=59.52 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=44.0
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+..+.|++.|++.++|||+||-|++....+.+ ++++.++|++++||||-|+
T Consensus 223 g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 223 GPADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEEEE
T ss_pred cCHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEEEE
Confidence 366899999999999999999999887665544 4458999999999998776
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=94.75 E-value=0.046 Score=49.52 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=31.4
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
++++-|.++++.|+++|.++|+..+.+++++|+.+
T Consensus 6 Lv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 40 (141)
T 1jmv_A 6 LVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDV 40 (141)
T ss_dssp EEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred EEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 56667788999999999999999999999999984
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=94.63 E-value=0.02 Score=51.83 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=36.8
Q ss_pred CchHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEE
Q 043087 530 ANMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVL 587 (754)
Q Consensus 530 ~~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIl 587 (754)
.+..+.|++.|++.++|||++|-|++ ++.++|++++||||-|.
T Consensus 95 g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 95 GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 46789999999999999999998864 24679999999997653
No 37
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=94.49 E-value=0.03 Score=58.58 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=45.6
Q ss_pred chHHHHHHHHhccCccEEEecCCCCCcccccccccchhhhHHHHHHhccCCCceEEEecCC
Q 043087 531 NMYEDVCNAAEDFRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAPCSVGVLVHKN 591 (754)
Q Consensus 531 ~m~edI~~~A~e~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~apCsVgIlvdrg 591 (754)
+-.+.|++.|++.++|||+||-|++....+. .++++.++|++++||||-|+-.+|
T Consensus 253 ~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 253 LPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp CHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCSEEEEECCTT
T ss_pred CcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCCCEEEECCCC
Confidence 5689999999999999999999987665433 456689999999999988874444
No 38
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=94.13 E-value=0.072 Score=55.51 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.3
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
+++.-|.++++.|+++|.++|+..+.+++++|+++
T Consensus 23 Lv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~ 57 (309)
T 3cis_A 23 IVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVS 57 (309)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 66666778899999999999999999999999986
No 39
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=94.12 E-value=0.12 Score=52.42 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=31.9
Q ss_pred EEEeccCcchHHHHHHHHHHhhCCCEEEEEEEeeec
Q 043087 601 AMLFFGGADDREALALSKRIGKNSNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~ddreaL~~a~rma~~~~v~ltv~r~~~~ 636 (754)
+++.-|.+.++.|+++|.++|+..+.+++++|+++.
T Consensus 4 Lv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~ 39 (268)
T 3ab8_A 4 LLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDT 39 (268)
T ss_dssp EEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEH
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 566667889999999999999999999999999864
No 40
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=91.37 E-value=0.84 Score=42.71 Aligned_cols=36 Identities=6% Similarity=0.090 Sum_probs=28.3
Q ss_pred EEEeccCc---------chHHHHHHHHHHh-hC--CCEEEEEEEeeec
Q 043087 601 AMLFFGGA---------DDREALALSKRIG-KN--SNINLTVIRFLYA 636 (754)
Q Consensus 601 ~~~f~GG~---------ddreaL~~a~rma-~~--~~v~ltv~r~~~~ 636 (754)
+++.-|.+ .++.|+++|.+++ +. .+.+++++|+.+.
T Consensus 9 Lv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~ 56 (175)
T 2gm3_A 9 MVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVV 56 (175)
T ss_dssp EEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-
T ss_pred EEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeec
Confidence 55555667 7899999999986 54 6899999999753
No 41
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=80.58 E-value=28 Score=36.36 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH-hhhhhhHHHHHHHH
Q 043087 298 NFVLPIYFGYMGFQFDIRDLLKHYQNILLVLLLLFSCIASRMIGTLFVCHRLKIPRIKAVLLAFV-LNLKGNFELILIDV 376 (754)
Q Consensus 298 ~~f~plFF~~~G~~~dl~~l~~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~-l~~kG~~~l~l~~~ 376 (754)
...+.+-+...|++++..++......|.......+.-++..++..+..++.++.+.....-+-+. ..|-|..+.++...
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~ 125 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYL 125 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHH
Confidence 35667778889999999888743233555555566677778888888888877765433322222 23455555554443
No 42
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=62.22 E-value=12 Score=42.22 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=31.4
Q ss_pred CCCceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccc-hhhhhhhhccCC
Q 043087 431 PESEFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRR-KAKLLYNQLEDG 488 (754)
Q Consensus 431 ~~~e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~-~~~~~~~~~~~~ 488 (754)
...+.|+++||+|+.+..-.-.|. ..+.|+.+.+.+ .++.... . +..++++|+.+.
T Consensus 124 ~~~~~hviI~G~g~~g~~la~~L~-~~~~~vvvid~~~~~~~~~~~-~~~~~~i~Gd~~~~ 182 (565)
T 4gx0_A 124 DDTRGHILIFGIDPITRTLIRKLE-SRNHLFVVVTDNYDQALHLEE-QEGFKVVYGSPTDA 182 (565)
T ss_dssp TTCCSCEEEESCCHHHHHHHHHTT-TTTCCEEEEESCHHHHHHHHH-SCSSEEEESCTTCH
T ss_pred cccCCeEEEECCChHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHH-hcCCeEEEeCCCCH
Confidence 345679999999998863222221 123555554433 3333332 3 566777877653
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=61.72 E-value=12 Score=37.54 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=55.4
Q ss_pred CcchHHHHHHHHHHhhCCCE--EEEEEEeeecccccccCCCCCCCCCCCCCCCCCCcccchhhhcccccchhhHhhHHHH
Q 043087 607 GADDREALALSKRIGKNSNI--NLTVIRFLYAAKKEEESSPSSQSSSASSPMVGEPSRKVRVLRSLSRNHEIEIAKDNVF 684 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~~v--~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~ 684 (754)
.|.|.+|++.|.|+++. +. ++|++.+=+++ . ++.
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--a-----------------------------------------~~~ 71 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ--A-----------------------------------------AET 71 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG--G-----------------------------------------HHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--H-----------------------------------------HHH
Confidence 78899999999999976 54 77877663210 0 123
Q ss_pred HHHHHhhccCCCceEEEE-EE----ecChHHHHHHHHHhhcCCceeEEEEccCCC-----CCCcccccCccC
Q 043087 685 FEEFRLRYVTSGEVGLIE-RY----VNNGIETLQVLREIMDSIEFSLFIVGKGSY-----GGSVMTTGLSDW 746 (754)
Q Consensus 685 ~~~f~~~~~~~~~v~y~e-~~----v~~~~~~~~~~~~~~~~~~~dL~iVGr~~~-----~~~~~~~gl~~w 746 (754)
+++-... +-+++...+ -- -.+...+..+|.+..++.+|||++.|+... .-.|+++.+-+|
T Consensus 72 lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 72 LRTALAM--GADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHH--TCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHhc--CCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 3333221 445665554 21 234566777777663221299999999752 224555555555
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=58.68 E-value=11 Score=37.73 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHHhhCCCE--EEEEEEe
Q 043087 607 GADDREALALSKRIGKNSNI--NLTVIRF 633 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~~v--~ltv~r~ 633 (754)
.|.|.+||+.|.|+++. +. ++|++.+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~ 66 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSC 66 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEe
Confidence 78899999999999976 54 7777766
No 45
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=58.11 E-value=9 Score=38.71 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred CcchHHHHHHHHHHhhCCCE--EEEEEEe
Q 043087 607 GADDREALALSKRIGKNSNI--NLTVIRF 633 (754)
Q Consensus 607 G~ddreaL~~a~rma~~~~v--~ltv~r~ 633 (754)
.|.|.+||+.|.|+++..+. ++|++.+
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~ 64 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSV 64 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 78899999999999875444 7777765
No 46
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=54.13 E-value=1.9e+02 Score=29.31 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhc-----cCccEEEecCCCCCcccccccccchhhhHHHHHHhccCC
Q 043087 507 EAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAED-----FRVTIIFLPFHKHQRIDQRLENSKEGYRTTNQKILRHAP 581 (754)
Q Consensus 507 ~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e-----~~a~LIilpfhk~~~~dg~~~~~~~~~r~~n~~Vl~~ap 581 (754)
+.++.|....+|..-.....+ .+..+++....+. -+.+.|+|+|..+... .+.++.+.+...+ +-
T Consensus 69 ~~l~~~l~~r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~-------~~~y~~~i~~~~~-~~ 138 (294)
T 3g40_A 69 PSISEGFQEEGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRDR-------DEEIREIIRKASM-YR 138 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG-------HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhCCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh-------hHHHHHHHHHHHH-hC
Confidence 666777665555443333333 3455677776666 4779999999765432 2357777766544 46
Q ss_pred CceEEEecCCCCCCCCCcEEEEeccC-----------cchHHHHHHHHHHhhCCCEEEEEEEeee
Q 043087 582 CSVGVLVHKNQTGFQLPVAAMLFFGG-----------ADDREALALSKRIGKNSNINLTVIRFLY 635 (754)
Q Consensus 582 CsVgIlvdrg~~~~~~~~~~~~f~GG-----------~ddreaL~~a~rma~~~~v~ltv~r~~~ 635 (754)
-.|-||-+....++..-.++=+-.|| ..-..++-+|-.+..+.++++.++++++
T Consensus 139 ~nVlil~~~~~~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~ 203 (294)
T 3g40_A 139 MGVLLFSKHPQAGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAP 203 (294)
T ss_dssp CEEEEEECCTTTTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ceEEEEecCCccCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecC
Confidence 67777754322222222224555444 2345689999999999999999999986
No 47
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=29.30 E-value=12 Score=24.84 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHhcCc
Q 043087 147 SITITILLANSASPVVMRLIDELKF 171 (754)
Q Consensus 147 ~l~i~~~ls~Ts~~vv~~lL~e~~~ 171 (754)
++.+|+++|.|++..+..++++.+.
T Consensus 6 ~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 6 NLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCChHHHHHHHHHcCC
Confidence 5778999999999999999999874
No 48
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=27.68 E-value=7.8 Score=41.95 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=58.5
Q ss_pred ceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccchhhhhhhhccCCC--------CCCC--CcccCCCc
Q 043087 434 EFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRRKAKLLYNQLEDGG--------QYSD--EEDYGGND 501 (754)
Q Consensus 434 e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~ 501 (754)
+.||++||+|+.|..-.-.|. .++.++.+.+.+ .++..++ .+..++++|+.+.+ .+.. -.....+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~-~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLL-SSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHH-HTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 458999999998863332221 134566665544 4554444 67778888877642 1110 00001112
Q ss_pred hhhHhHHHHhhhccCceeEEEeEEeeCCCchHHHHHHHHhccCccEEEecC
Q 043087 502 VLEINEAVDSFTAQTRIRISQVKIVNTFANMYEDVCNAAEDFRVTIIFLPF 552 (754)
Q Consensus 502 il~i~~a~~~~~~~~~V~v~~~~~vs~~~~m~edI~~~A~e~~a~LIilpf 552 (754)
.+.+...++...++..|.+|..+. +-....++.+++.++-|-
T Consensus 82 n~~i~~~ar~~~p~~~Iiara~~~---------~~~~~L~~~Gad~Vi~~~ 123 (413)
T 3l9w_A 82 NLQLTEMVKEHFPHLQIIARARDV---------DHYIRLRQAGVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESSH---------HHHHHHHHTTCSSCEETT
T ss_pred HHHHHHHHHHhCCCCeEEEEECCH---------HHHHHHHHCCCCEEECcc
Confidence 222336666666666676665521 223344667888877664
No 49
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=25.45 E-value=1.9 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.0
Q ss_pred HHHHHHHHhCchHhHHHHHHHhhccCC
Q 043087 255 SLAFSIEVLGYNSTITGFLLGVFFPRD 281 (754)
Q Consensus 255 ~~~~~a~~~G~s~~lGaflaGl~i~~~ 281 (754)
++++++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 345688999999999999999998853
No 50
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.19 E-value=19 Score=32.09 Aligned_cols=54 Identities=11% Similarity=-0.024 Sum_probs=28.0
Q ss_pred CCceeEEEEeecCCCcccchhhhcccCCCCcceeee--eeccccccchhhhhhhhccC
Q 043087 432 ESEFRILSCAYEPRHASGQLVLSASFGSSISPYLMH--LVELPKRRRKAKLLYNQLED 487 (754)
Q Consensus 432 ~~e~rIlic~~~~~~~~~~i~l~~~~~~p~~v~~l~--lVel~~r~~~~~~~~~~~~~ 487 (754)
+.+.||++||+|+.|..-.-.|.. .+.++.+++.+ .++...+ .+..++++|..+
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~ 60 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAAN 60 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTS
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCC
Confidence 446689999999988643333311 23444444333 2222222 344455665543
Done!