BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043094
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
Query: 178 ICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESG 237
+ G G GKT+LAK VA +A V F M S I G G
Sbjct: 49 LVGPPGTGKTLLAKAVAGEAH-------VPFFSMGGSSFIEMFVG-------------LG 88
Query: 238 SGRARSLFSRLKKEKRILVILDNI 261
+ R R LF KK+ ++ +D I
Sbjct: 89 ASRVRDLFETAKKQAPSIIFIDEI 112
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 178 ICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESG 237
+ G G GKT+LAK VA +A+ V F M+ + + I G G
Sbjct: 44 LLGPPGCGKTLLAKAVATEAQ-------VPFLAMAGAEFVEVIGG-------------LG 83
Query: 238 SGRARSLFSRLKKEKRILVILDNI 261
+ R RSLF + +V +D I
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEI 107
>pdb|3TNY|A Chain A, Structure Of Yfiy From Bacillus Cereus Bound To The
Siderophore Iron (Iii) Schizokinen
Length = 303
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 69 VQNWLASANKAIVEAK----KFVGDEATENKHSFKGFCPNLKMRRRLRKEAV-RQLDAIV 123
V++W ++ K K VGDE N + P+L + ++R E V QL AI
Sbjct: 59 VKSWTGDPWYPHIKDKMKDVKVVGDEGQVNVETIASLKPDLIIGNKMRHEKVYEQLKAIA 118
Query: 124 K--LREDGRFERISHSIIPEDTLLMSNKGYE---DFESRISTLNDILGALRNPDISML 176
E R E + L +G + D+ESR+ L LG N +ISM+
Sbjct: 119 PTVFSETLRGEWKDNFKFYAKALNKEKEGQKVVADYESRMKDLKGKLGDKVNQEISMV 176
>pdb|3U52|C Chain C, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|D Chain D, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 333
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 52 EHAVNDAERKCEEIEQNVQNWLASANKAIVEAKKFVGDEA--TENKHSFKGFCPNLKMRR 109
EH +ND R +E +W A ++ +VG+ A E+ + GFC +
Sbjct: 54 EHTLNDPTRTAIRME----DWCAVSDPRQFYYGAYVGNRAKMQESAETSFGFCEKRNLLT 109
Query: 110 RLRKEAVRQL 119
RL +E +QL
Sbjct: 110 RLSEETQKQL 119
>pdb|2INP|C Chain C, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|D Chain D, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 328
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 52 EHAVNDAERKCEEIEQNVQNWLASANKAIVEAKKFVGDEA--TENKHSFKGFCPNLKMRR 109
EH +ND R +E +W A ++ +VG+ A E+ + GFC +
Sbjct: 51 EHTLNDPTRTAIRME----DWCAVSDPRQFYYGAYVGNRAKMQESAETSFGFCEKRNLLT 106
Query: 110 RLRKEAVRQL 119
RL +E +QL
Sbjct: 107 RLSEETQKQL 116
>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
pdb|1SG0|A Chain A, Crystal Structure Analysis Of Qr2 In Complex With
Resveratrol
pdb|1SG0|B Chain B, Crystal Structure Analysis Of Qr2 In Complex With
Resveratrol
pdb|1XI2|A Chain A, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
pdb|1XI2|B Chain B, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
pdb|2QMY|A Chain A, Quinone Reductase 2 In Complex With Adrenochrome
pdb|2QMY|B Chain B, Quinone Reductase 2 In Complex With Adrenochrome
pdb|2QMZ|A Chain A, Quinone Reductase 2 In Complex With Dopamine
pdb|2QMZ|B Chain B, Quinone Reductase 2 In Complex With Dopamine
pdb|2QX8|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX8|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX9|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX9|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX4|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX4|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|2QX6|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QX6|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|3O2N|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3O2N|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NFR|A Chain A, Casimiroin Analog Inhibitor Of Quinone Reductase 2
pdb|3NFR|B Chain B, Casimiroin Analog Inhibitor Of Quinone Reductase 2
pdb|3NHF|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHF|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHJ|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHJ|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHK|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHK|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHL|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHL|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHP|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHP|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHR|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHR|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHS|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHS|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHU|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHU|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHW|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHW|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHY|A Chain A, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3NHY|B Chain B, X-Ray Crystallographic Structure Activity Relationship
(Sar) Of Casimiroin And Its Analogs Bound To Human
Quinone Reductase 2
pdb|3UXE|A Chain A, Design, Synthesis And Biological Evaluation Of Potent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors For Quinone Reductase 2
pdb|3UXE|B Chain B, Design, Synthesis And Biological Evaluation Of Potent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors For Quinone Reductase 2
pdb|3UXH|A Chain A, Design, Synthesis And Biological Evaluation Of Potetent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors Of Quinone Reductase 2
pdb|3UXH|B Chain B, Design, Synthesis And Biological Evaluation Of Potetent
Quinoline And Pyrroloquinoline Ammosamide Analogues As
Inhibitors Of Quinone Reductase 2
Length = 230
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 35 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 93
Query: 203 FDLVVF 208
DLV+F
Sbjct: 94 ADLVIF 99
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 178 ICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESG 237
+ G G GKT+LAK +A +AK V F +S S + G G
Sbjct: 50 MVGPPGTGKTLLAKAIAGEAK-------VPFFTISGSDFVEMFVG-------------VG 89
Query: 238 SGRARSLFSRLKKEKRILVILDNI 261
+ R R +F + KK ++ +D I
Sbjct: 90 ASRVRDMFEQAKKAAPCIIFIDEI 113
>pdb|2BZS|A Chain A, Binding Of Anti-Cancer Prodrug Cb1954 To The Activating
Enzyme Nqo2 Revealed By The Crystal Structure Of Their
Complex.
pdb|2BZS|B Chain B, Binding Of Anti-Cancer Prodrug Cb1954 To The Activating
Enzyme Nqo2 Revealed By The Crystal Structure Of Their
Complex
Length = 236
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 41 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 99
Query: 203 FDLVVF 208
DLV+F
Sbjct: 100 ADLVIF 105
>pdb|1ZX1|A Chain A, Human Quinone Oxidoreductase 2 (Nqo2) In Complex With The
Cytostatic Prodrug Cb1954
pdb|1ZX1|B Chain B, Human Quinone Oxidoreductase 2 (Nqo2) In Complex With The
Cytostatic Prodrug Cb1954
pdb|2QWX|A Chain A, Crystal Structure Of Quinone Reductase Ii
pdb|2QWX|B Chain B, Crystal Structure Of Quinone Reductase Ii
pdb|3G5M|A Chain A, Synthesis Of Casimiroin And Optimization Of Its Quinone
Reductase 2 And Aromatase Inhibitory Activity
pdb|3G5M|B Chain B, Synthesis Of Casimiroin And Optimization Of Its Quinone
Reductase 2 And Aromatase Inhibitory Activity
pdb|3GAM|A Chain A, Synthesis Of Casimiroin And Optimization Of Its Quinone
Reductase 2 And Aromatase Inhibitory Activity
pdb|3GAM|B Chain B, Synthesis Of Casimiroin And Optimization Of Its Quinone
Reductase 2 And Aromatase Inhibitory Activity
pdb|3OVM|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OVM|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OWH|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OWH|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OWX|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OWX|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX1|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX1|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX2|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX2|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX3|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
pdb|3OX3|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
By Compounds With Micromolar To Nanomolar Range Ic50
Values
Length = 231
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 36 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 94
Query: 203 FDLVVF 208
DLV+F
Sbjct: 95 ADLVIF 100
>pdb|3O73|A Chain A, Crystal Structure Of Quinone Reductase 2 In Complex With
The Indolequinone Mac627
pdb|3O73|B Chain B, Crystal Structure Of Quinone Reductase 2 In Complex With
The Indolequinone Mac627
Length = 237
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 36 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 94
Query: 203 FDLVVF 208
DLV+F
Sbjct: 95 ADLVIF 100
>pdb|3TZB|A Chain A, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
pdb|3TZB|B Chain B, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
pdb|3TZB|C Chain C, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
pdb|3TZB|D Chain D, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
Length = 230
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 36 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 94
Query: 203 FDLVVF 208
DLV+F
Sbjct: 95 ADLVIF 100
>pdb|3TE7|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 5a1
pdb|3TE7|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 5a1
pdb|3TEM|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 6a1
pdb|3TEM|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
Imidazoacridin-6-One 6a1
Length = 228
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 34 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 92
Query: 203 FDLVVF 208
DLV+F
Sbjct: 93 ADLVIF 98
>pdb|3FW1|A Chain A, Quinone Reductase 2
Length = 233
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 143 TLLMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKL 202
T+ +S+ +FE R +T DI G L NP++ G+ + LA ++ + K +
Sbjct: 38 TVTVSDLYAMNFEPR-ATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVRE 96
Query: 203 FDLVVF 208
DLV+F
Sbjct: 97 ADLVIF 102
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 164 ILGALRNPD-------ISMLGI--CGMGGIGKTMLAKEVARKAKNN 200
IL +RNPD ++ G+ G G GKT+LAK VA ++ N
Sbjct: 26 ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN 71
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 178 ICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESG 237
+ G G GKT+LA+ VA +A V F +S S + G G
Sbjct: 54 LVGPPGTGKTLLARAVAGEAN-------VPFFHISGSDFVELFVG-------------VG 93
Query: 238 SGRARSLFSRLKKEKRILVILDNI 261
+ R R LF++ K +V +D I
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEI 117
>pdb|2INN|C Chain C, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
pdb|2INN|D Chain D, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
Length = 333
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 52 EHAVNDAERKCEEIEQNVQNWLASANKAIVEAKKFVGDEA--TENKHSFKGFCPNLKMRR 109
EH +ND R E +W A ++ +VG+ A E+ + GFC +
Sbjct: 54 EHTLNDPTRTAIRXE----DWCAVSDPRQFYYGAYVGNRAKXQESAETSFGFCEKRNLLT 109
Query: 110 RLRKEAVRQL 119
RL +E +QL
Sbjct: 110 RLSEETQKQL 119
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 131 FERISHSIIPEDTLLMSNKGYEDFESRISTLN---------DILGALRNPDISMLGICGM 181
F S I+P +G +FE+ + L D++ L N DI + + G
Sbjct: 143 FATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGA 202
Query: 182 GGIGKTMLAKEVARKAKNNKLFDLV 206
G IG LA+ RK K L D+V
Sbjct: 203 GYIG-VELAEAFQRKGKEVVLIDVV 226
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 131 FERISHSIIPEDTLLMSNKGYEDFESRISTLN---------DILGALRNPDISMLGICGM 181
F S I+P +G +FE+ + L D++ L N DI + + G
Sbjct: 143 FATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGA 202
Query: 182 GGIGKTMLAKEVARKAKNNKLFDLV 206
G IG LA+ RK K L D+V
Sbjct: 203 GYIG-VELAEAFQRKGKEVVLIDVV 226
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 169 RNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL 205
R P +L + G G GK+ LAK VA +A N+ F +
Sbjct: 164 RTPWRGIL-LFGPPGTGKSYLAKAVATEANNSTFFSI 199
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 178 ICGMGGIGKTMLAKEVARKAKNNKLFDL 205
+ G G GK+ LAK VA +A N+ F +
Sbjct: 50 LFGPPGTGKSYLAKAVATEANNSTFFSI 77
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 176 LGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGE 223
LGI MGG+ T++AK K++++F +E +QS I +QGE
Sbjct: 11 LGIETMGGVMTTLIAKNTTIPTKHSQVFST---AEDNQSAVSIHVLQGE 56
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 19 SIERQFSYVRDYTSNFENLKTQVEKLEGEIMSMEHAV 55
++E Q +++R Y + N K ++++LEG+ ++ A+
Sbjct: 639 TLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEAL 675
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,908,925
Number of Sequences: 62578
Number of extensions: 265926
Number of successful extensions: 1075
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 47
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)