Query 043094
Match_columns 261
No_of_seqs 222 out of 1729
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-28 6.1E-33 232.8 22.2 229 30-261 19-270 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.8 2.9E-19 6.3E-24 152.6 11.7 104 157-261 1-110 (287)
3 PLN03210 Resistant to P. syrin 99.5 8.2E-13 1.8E-17 132.0 18.2 108 149-261 181-305 (1153)
4 PRK00411 cdc6 cell division co 99.2 3.6E-10 7.8E-15 100.9 14.2 112 150-261 28-147 (394)
5 TIGR02928 orc1/cdc6 family rep 99.1 9.4E-10 2E-14 97.2 13.6 112 150-261 13-138 (365)
6 PRK09376 rho transcription ter 99.1 5.7E-10 1.2E-14 97.4 9.5 97 164-261 159-265 (416)
7 cd01128 rho_factor Transcripti 99.1 5.8E-10 1.3E-14 92.9 8.9 89 172-261 15-112 (249)
8 PF13401 AAA_22: AAA domain; P 99.0 8.5E-10 1.8E-14 82.9 7.7 90 172-261 3-96 (131)
9 COG1474 CDC6 Cdc6-related prot 99.0 7.5E-09 1.6E-13 91.0 13.3 111 151-261 16-132 (366)
10 TIGR03015 pepcterm_ATPase puta 98.9 1.7E-08 3.8E-13 85.3 13.2 89 170-261 40-132 (269)
11 PTZ00202 tuzin; Provisional 98.9 5.8E-08 1.2E-12 85.8 13.2 104 146-258 256-367 (550)
12 TIGR00767 rho transcription te 98.9 1.7E-08 3.6E-13 88.6 9.9 89 172-261 167-264 (415)
13 PF13191 AAA_16: AAA ATPase do 98.8 2.8E-08 6.2E-13 78.9 8.7 48 153-200 1-51 (185)
14 PF01637 Arch_ATPase: Archaeal 98.7 1.3E-08 2.8E-13 83.7 5.4 45 154-198 1-45 (234)
15 PF05729 NACHT: NACHT domain 98.7 8.8E-08 1.9E-12 74.5 8.1 83 174-261 1-90 (166)
16 cd00009 AAA The AAA+ (ATPases 98.7 3.2E-07 6.9E-12 69.4 10.8 59 156-216 2-60 (151)
17 PTZ00112 origin recognition co 98.6 4.5E-07 9.7E-12 86.1 12.3 111 151-261 754-878 (1164)
18 PRK11331 5-methylcytosine-spec 98.5 4.2E-07 9.1E-12 81.1 8.3 70 151-222 174-243 (459)
19 KOG2028 ATPase related to the 98.5 3.4E-07 7.4E-12 78.6 7.1 76 148-227 134-212 (554)
20 COG2256 MGS1 ATPase related to 98.5 6.3E-07 1.4E-11 77.9 8.7 53 146-198 18-73 (436)
21 PRK13342 recombination factor 98.5 4.3E-07 9.4E-12 81.6 8.1 52 147-198 7-61 (413)
22 PRK04841 transcriptional regul 98.4 3.2E-06 6.9E-11 83.3 12.4 107 146-261 8-130 (903)
23 PF05621 TniB: Bacterial TniB 98.3 1.2E-05 2.7E-10 68.1 11.8 101 161-261 46-154 (302)
24 PRK08118 topology modulation p 98.3 4.6E-07 1E-11 71.2 3.0 35 174-208 2-37 (167)
25 PRK12402 replication factor C 98.3 7.2E-06 1.6E-10 71.5 10.1 52 147-198 10-61 (337)
26 PRK12608 transcription termina 98.2 1.7E-05 3.6E-10 69.5 11.7 99 162-261 121-229 (380)
27 PF05496 RuvB_N: Holliday junc 98.2 4.7E-06 1E-10 67.7 7.7 54 146-199 18-76 (233)
28 CHL00095 clpC Clp protease ATP 98.2 7.8E-06 1.7E-10 79.6 10.7 48 151-198 178-225 (821)
29 PLN03025 replication factor C 98.2 1.1E-05 2.4E-10 70.0 10.7 53 146-198 7-59 (319)
30 TIGR02639 ClpA ATP-dependent C 98.2 8.1E-06 1.7E-10 78.6 10.5 50 149-198 179-228 (731)
31 PRK04195 replication factor C 98.2 6E-06 1.3E-10 75.7 9.1 67 146-217 8-78 (482)
32 smart00382 AAA ATPases associa 98.2 7.9E-06 1.7E-10 61.0 8.0 85 174-261 3-87 (148)
33 KOG2543 Origin recognition com 98.2 2.1E-05 4.5E-10 68.2 11.0 105 152-261 6-124 (438)
34 PRK00440 rfc replication facto 98.2 2E-05 4.4E-10 68.2 11.3 53 146-198 11-63 (319)
35 TIGR00635 ruvB Holliday juncti 98.1 1.8E-05 3.9E-10 68.2 9.9 48 151-198 3-55 (305)
36 PRK00080 ruvB Holliday junctio 98.1 2.8E-05 6.1E-10 67.8 10.7 52 147-198 20-76 (328)
37 PF00004 AAA: ATPase family as 98.1 6.8E-06 1.5E-10 61.3 5.8 23 176-198 1-23 (132)
38 TIGR03420 DnaA_homol_Hda DnaA 98.1 1.2E-05 2.6E-10 66.1 7.6 55 157-213 22-76 (226)
39 PRK13341 recombination factor 98.1 1.1E-05 2.4E-10 76.9 7.9 52 147-198 23-77 (725)
40 KOG2227 Pre-initiation complex 98.1 6.3E-05 1.4E-09 66.8 11.7 113 149-261 147-265 (529)
41 TIGR03689 pup_AAA proteasome A 98.1 2.6E-05 5.5E-10 71.4 9.5 48 151-198 181-241 (512)
42 PF13173 AAA_14: AAA domain 98.1 1.4E-05 2.9E-10 59.9 6.5 40 173-215 2-41 (128)
43 PRK14962 DNA polymerase III su 98.0 4.1E-05 9E-10 69.8 10.8 53 146-198 8-61 (472)
44 PRK07261 topology modulation p 98.0 3.1E-05 6.7E-10 61.1 8.7 54 175-228 2-56 (171)
45 PF04665 Pox_A32: Poxvirus A32 98.0 4E-05 8.6E-10 63.4 9.1 37 173-211 13-49 (241)
46 PRK14949 DNA polymerase III su 98.0 3.2E-05 6.9E-10 74.4 9.7 53 146-198 10-63 (944)
47 PRK14961 DNA polymerase III su 98.0 6.8E-05 1.5E-09 66.3 11.3 52 147-198 11-63 (363)
48 COG2909 MalT ATP-dependent tra 98.0 0.00012 2.6E-09 69.4 13.1 114 141-261 8-138 (894)
49 TIGR03345 VI_ClpV1 type VI sec 98.0 4.7E-05 1E-09 74.2 10.7 50 149-198 184-233 (852)
50 PHA00729 NTP-binding motif con 98.0 4.6E-05 1E-09 62.3 9.1 35 163-197 7-41 (226)
51 PRK14957 DNA polymerase III su 98.0 6.7E-05 1.4E-09 69.3 10.8 52 147-198 11-63 (546)
52 PRK14958 DNA polymerase III su 98.0 5.9E-05 1.3E-09 69.5 10.5 53 146-198 10-63 (509)
53 PRK10865 protein disaggregatio 98.0 5.4E-05 1.2E-09 74.0 10.6 50 149-198 175-224 (857)
54 KOG2004 Mitochondrial ATP-depe 98.0 0.00071 1.5E-08 63.2 17.0 48 151-198 410-463 (906)
55 PHA02544 44 clamp loader, smal 97.9 8.1E-05 1.7E-09 64.5 9.6 53 146-198 15-68 (316)
56 PRK14956 DNA polymerase III su 97.9 4.7E-05 1E-09 68.9 8.2 53 146-198 12-65 (484)
57 TIGR03346 chaperone_ClpB ATP-d 97.9 8.1E-05 1.8E-09 72.9 10.5 50 149-198 170-219 (852)
58 TIGR02237 recomb_radB DNA repa 97.9 7.5E-05 1.6E-09 60.7 8.8 85 173-261 12-106 (209)
59 TIGR02881 spore_V_K stage V sp 97.9 4.6E-05 9.9E-10 64.3 7.7 26 172-197 41-66 (261)
60 TIGR01242 26Sp45 26S proteasom 97.9 5.6E-05 1.2E-09 66.9 8.3 48 151-198 121-181 (364)
61 PRK08939 primosomal protein Dn 97.9 0.0029 6.2E-08 54.6 18.6 88 156-261 135-226 (306)
62 PRK12377 putative replication 97.9 0.00013 2.9E-09 60.8 9.9 73 172-261 100-172 (248)
63 PRK06893 DNA replication initi 97.9 8.3E-05 1.8E-09 61.5 8.7 39 172-212 38-76 (229)
64 PRK14963 DNA polymerase III su 97.9 0.00011 2.5E-09 67.5 10.3 53 146-198 8-61 (504)
65 PRK07003 DNA polymerase III su 97.9 0.00011 2.3E-09 69.7 10.1 52 147-198 11-63 (830)
66 PRK03992 proteasome-activating 97.9 7.2E-05 1.6E-09 66.8 8.5 48 151-198 130-190 (389)
67 PRK12323 DNA polymerase III su 97.8 0.00011 2.4E-09 68.6 9.9 52 147-198 11-63 (700)
68 PRK11034 clpA ATP-dependent Cl 97.8 8E-05 1.7E-09 71.5 9.2 47 151-197 185-231 (758)
69 PRK14960 DNA polymerase III su 97.8 0.00016 3.5E-09 67.6 10.8 52 147-198 10-62 (702)
70 cd01123 Rad51_DMC1_radA Rad51_ 97.8 9.9E-05 2.1E-09 61.1 8.4 89 172-261 18-124 (235)
71 PRK14969 DNA polymerase III su 97.8 0.0002 4.3E-09 66.4 10.8 52 147-198 11-63 (527)
72 PRK08116 hypothetical protein; 97.8 0.00014 3.1E-09 61.5 9.2 73 174-261 115-187 (268)
73 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.5E-10 58.1 3.6 24 175-198 1-24 (121)
74 PRK14951 DNA polymerase III su 97.8 0.00015 3.3E-09 67.9 10.1 52 147-198 11-63 (618)
75 PRK08084 DNA replication initi 97.8 0.00017 3.8E-09 59.8 9.2 52 160-213 32-83 (235)
76 PRK08727 hypothetical protein; 97.8 0.00014 3.1E-09 60.3 8.7 61 151-213 18-79 (233)
77 PRK14955 DNA polymerase III su 97.8 0.00019 4.1E-09 64.3 10.1 52 147-198 11-63 (397)
78 KOG0991 Replication factor C, 97.8 8.3E-05 1.8E-09 60.5 6.8 78 147-224 22-99 (333)
79 PF05673 DUF815: Protein of un 97.8 0.00015 3.2E-09 59.8 8.4 54 147-200 22-79 (249)
80 PRK05896 DNA polymerase III su 97.8 0.0002 4.4E-09 66.6 10.2 53 146-198 10-63 (605)
81 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00015 3.2E-09 66.5 9.0 48 152-199 190-249 (802)
82 PRK06645 DNA polymerase III su 97.7 0.00033 7.2E-09 64.3 11.2 53 146-198 15-68 (507)
83 PRK14970 DNA polymerase III su 97.7 0.00032 6.9E-09 62.2 10.7 52 147-198 12-64 (367)
84 TIGR00602 rad24 checkpoint pro 97.7 4.3E-05 9.4E-10 71.7 5.3 53 146-198 78-135 (637)
85 COG1484 DnaC DNA replication p 97.7 0.0003 6.5E-09 59.1 9.9 73 172-261 104-176 (254)
86 PRK08691 DNA polymerase III su 97.7 0.00033 7.1E-09 66.0 11.0 52 146-197 10-62 (709)
87 smart00763 AAA_PrkA PrkA AAA d 97.7 6.1E-05 1.3E-09 65.7 5.8 47 153-199 52-104 (361)
88 PRK14964 DNA polymerase III su 97.7 0.00037 8E-09 63.7 10.8 51 146-196 7-58 (491)
89 PF00448 SRP54: SRP54-type pro 97.7 0.00032 7E-09 56.5 9.3 57 173-231 1-58 (196)
90 CHL00181 cbbX CbbX; Provisiona 97.7 0.00037 8E-09 59.6 10.1 25 174-198 60-84 (287)
91 PRK07994 DNA polymerase III su 97.7 0.00035 7.5E-09 65.8 10.5 52 147-198 11-63 (647)
92 PF05659 RPW8: Arabidopsis bro 97.7 0.0011 2.4E-08 50.7 11.2 112 2-127 3-115 (147)
93 TIGR02903 spore_lon_C ATP-depe 97.7 8E-05 1.7E-09 70.2 6.0 56 148-203 150-205 (615)
94 cd01133 F1-ATPase_beta F1 ATP 97.7 0.00059 1.3E-08 57.6 10.5 89 172-261 68-172 (274)
95 PRK05564 DNA polymerase III su 97.7 0.00044 9.6E-09 59.9 10.1 76 152-228 4-85 (313)
96 TIGR03499 FlhF flagellar biosy 97.6 0.00044 9.6E-09 59.0 9.9 86 172-260 193-280 (282)
97 TIGR02397 dnaX_nterm DNA polym 97.6 0.00083 1.8E-08 59.1 12.0 52 147-198 9-61 (355)
98 COG2255 RuvB Holliday junction 97.6 8.9E-05 1.9E-09 62.0 5.3 54 147-200 21-79 (332)
99 PTZ00454 26S protease regulato 97.6 0.00028 6.1E-09 63.0 8.9 48 151-198 144-204 (398)
100 TIGR02012 tigrfam_recA protein 97.6 0.00031 6.7E-09 60.7 8.8 83 172-261 54-142 (321)
101 TIGR02880 cbbX_cfxQ probable R 97.6 0.00053 1.1E-08 58.6 10.2 24 175-198 60-83 (284)
102 PRK14088 dnaA chromosomal repl 97.6 0.00023 5.1E-09 64.5 8.4 49 173-228 130-179 (440)
103 cd01120 RecA-like_NTPases RecA 97.6 0.00065 1.4E-08 52.2 9.7 40 175-216 1-40 (165)
104 PRK06696 uridine kinase; Valid 97.6 0.00011 2.4E-09 60.5 5.5 43 156-198 2-47 (223)
105 PF01695 IstB_IS21: IstB-like 97.6 0.00023 4.9E-09 56.5 7.1 72 172-261 46-117 (178)
106 TIGR02238 recomb_DMC1 meiotic 97.6 0.00041 8.8E-09 60.0 9.2 89 172-261 95-200 (313)
107 PRK08181 transposase; Validate 97.6 0.00026 5.6E-09 59.8 7.8 50 166-225 101-150 (269)
108 PRK09354 recA recombinase A; P 97.6 0.00044 9.6E-09 60.3 9.1 82 173-261 60-147 (349)
109 cd01393 recA_like RecA is a b 97.6 0.00088 1.9E-08 55.0 10.6 49 173-221 19-71 (226)
110 cd00983 recA RecA is a bacter 97.6 0.0004 8.7E-09 60.1 8.7 82 173-261 55-142 (325)
111 PRK07952 DNA replication prote 97.6 0.0008 1.7E-08 56.1 10.2 85 161-261 85-171 (244)
112 PRK06921 hypothetical protein; 97.6 0.00055 1.2E-08 57.9 9.2 39 172-211 116-154 (266)
113 PRK14722 flhF flagellar biosyn 97.6 0.00066 1.4E-08 59.9 9.9 60 173-232 137-197 (374)
114 PRK00149 dnaA chromosomal repl 97.5 0.00039 8.5E-09 63.3 8.7 27 173-199 148-174 (450)
115 PRK14954 DNA polymerase III su 97.5 0.00089 1.9E-08 63.0 11.2 52 147-198 11-63 (620)
116 KOG0734 AAA+-type ATPase conta 97.5 0.00034 7.4E-09 63.3 7.9 50 151-200 303-364 (752)
117 PF00308 Bac_DnaA: Bacterial d 97.5 0.00034 7.4E-09 57.4 7.5 28 172-199 33-60 (219)
118 TIGR00362 DnaA chromosomal rep 97.5 0.00032 6.9E-09 63.1 7.9 27 173-199 136-162 (405)
119 PRK14950 DNA polymerase III su 97.5 0.00033 7.2E-09 65.8 8.2 52 147-198 11-63 (585)
120 PRK06526 transposase; Provisio 97.5 0.00028 6.2E-09 59.2 7.0 27 172-198 97-123 (254)
121 PLN03187 meiotic recombination 97.5 0.00061 1.3E-08 59.6 9.2 89 172-261 125-230 (344)
122 PRK07940 DNA polymerase III su 97.5 0.00087 1.9E-08 59.8 10.4 47 151-197 4-60 (394)
123 PRK09361 radB DNA repair and r 97.5 0.00052 1.1E-08 56.4 8.4 46 172-220 22-67 (225)
124 PRK14952 DNA polymerase III su 97.5 0.0011 2.3E-08 62.0 11.3 53 146-198 7-60 (584)
125 PRK09270 nucleoside triphospha 97.5 0.0013 2.8E-08 54.4 10.7 29 171-199 31-59 (229)
126 COG1419 FlhF Flagellar GTP-bin 97.5 0.0015 3.4E-08 57.5 11.5 54 158-212 184-242 (407)
127 PF08423 Rad51: Rad51; InterP 97.5 0.00064 1.4E-08 57.2 8.9 88 173-261 38-142 (256)
128 COG1222 RPT1 ATP-dependent 26S 97.5 0.00066 1.4E-08 58.6 8.9 48 152-199 151-211 (406)
129 COG0466 Lon ATP-dependent Lon 97.5 0.0062 1.3E-07 57.2 15.8 48 151-198 322-375 (782)
130 PRK14087 dnaA chromosomal repl 97.5 0.0004 8.6E-09 63.1 8.0 75 173-261 141-215 (450)
131 PRK14953 DNA polymerase III su 97.5 0.0012 2.5E-08 60.6 11.1 51 147-197 11-62 (486)
132 TIGR01241 FtsH_fam ATP-depende 97.5 0.00069 1.5E-08 62.5 9.7 49 150-198 53-113 (495)
133 KOG0744 AAA+-type ATPase [Post 97.5 0.00053 1.1E-08 58.5 8.0 28 173-200 177-204 (423)
134 PRK09183 transposase/IS protei 97.5 0.0005 1.1E-08 57.9 7.8 26 173-198 102-127 (259)
135 PRK09111 DNA polymerase III su 97.5 0.001 2.2E-08 62.5 10.5 53 146-198 18-71 (598)
136 PLN00020 ribulose bisphosphate 97.5 0.00069 1.5E-08 59.3 8.7 29 171-199 146-174 (413)
137 PRK09112 DNA polymerase III su 97.5 0.0013 2.7E-08 57.9 10.4 51 148-198 19-70 (351)
138 PTZ00361 26 proteosome regulat 97.4 0.0003 6.5E-09 63.4 6.5 48 151-198 182-242 (438)
139 CHL00176 ftsH cell division pr 97.4 0.00064 1.4E-08 64.3 8.9 49 150-198 181-241 (638)
140 TIGR02236 recomb_radA DNA repa 97.4 0.0012 2.6E-08 57.2 9.9 58 172-230 94-155 (310)
141 PRK06547 hypothetical protein; 97.4 0.00026 5.7E-09 55.8 5.3 35 164-198 6-40 (172)
142 COG1223 Predicted ATPase (AAA+ 97.4 0.00051 1.1E-08 56.9 6.9 91 151-261 120-219 (368)
143 COG1102 Cmk Cytidylate kinase 97.4 0.00024 5.2E-09 54.6 4.7 44 175-231 2-45 (179)
144 COG1618 Predicted nucleotide k 97.4 0.00024 5.2E-09 54.6 4.6 28 173-200 5-32 (179)
145 PRK07764 DNA polymerase III su 97.4 0.0012 2.5E-08 64.2 10.2 53 146-198 9-62 (824)
146 PRK10865 protein disaggregatio 97.4 0.001 2.2E-08 65.2 9.9 47 152-198 568-623 (857)
147 cd02025 PanK Pantothenate kina 97.4 0.0013 2.9E-08 53.9 9.3 24 175-198 1-24 (220)
148 PRK00771 signal recognition pa 97.4 0.0019 4E-08 58.4 10.9 59 172-232 94-153 (437)
149 TIGR02639 ClpA ATP-dependent C 97.4 0.0011 2.4E-08 64.0 10.0 46 152-197 454-508 (731)
150 PRK06835 DNA replication prote 97.4 0.021 4.7E-07 49.7 17.0 37 173-211 183-219 (329)
151 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.002 4.2E-08 53.6 10.3 49 172-224 20-68 (237)
152 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.0007 1.5E-08 53.7 7.2 24 175-198 1-24 (183)
153 PTZ00035 Rad51 protein; Provis 97.4 0.0016 3.5E-08 57.0 10.0 89 172-261 117-222 (337)
154 TIGR00678 holB DNA polymerase 97.4 0.0026 5.7E-08 50.7 10.5 36 163-198 3-39 (188)
155 TIGR02239 recomb_RAD51 DNA rep 97.4 0.0011 2.5E-08 57.4 8.9 89 172-261 95-200 (316)
156 TIGR00959 ffh signal recogniti 97.4 0.0018 3.8E-08 58.4 10.4 27 172-198 98-124 (428)
157 PRK07667 uridine kinase; Provi 97.4 0.00033 7.2E-09 56.3 5.1 37 162-198 4-42 (193)
158 PLN03186 DNA repair protein RA 97.4 0.0012 2.7E-08 57.7 8.9 59 172-231 122-184 (342)
159 PRK08533 flagellar accessory p 97.3 0.0021 4.5E-08 53.2 9.8 52 173-229 24-75 (230)
160 cd03115 SRP The signal recogni 97.3 0.0013 2.8E-08 51.7 8.2 25 175-199 2-26 (173)
161 PRK04301 radA DNA repair and r 97.3 0.0018 3.9E-08 56.2 9.8 58 172-230 101-162 (317)
162 PRK14965 DNA polymerase III su 97.3 0.0019 4.2E-08 60.6 10.5 52 147-198 11-63 (576)
163 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0014 3.1E-08 64.1 10.0 47 152-198 566-621 (852)
164 PRK14959 DNA polymerase III su 97.3 0.0022 4.8E-08 60.1 10.8 52 147-198 11-63 (624)
165 PF13238 AAA_18: AAA domain; P 97.3 0.00022 4.7E-09 52.9 3.4 22 176-197 1-22 (129)
166 PRK06305 DNA polymerase III su 97.3 0.0031 6.8E-08 57.4 11.4 52 147-198 12-64 (451)
167 PRK14948 DNA polymerase III su 97.3 0.0027 5.8E-08 60.0 11.2 52 147-198 11-63 (620)
168 TIGR00554 panK_bact pantothena 97.3 0.0023 5E-08 54.6 9.9 28 171-198 60-87 (290)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.2E-08 63.4 10.7 47 152-198 565-620 (852)
170 PF07728 AAA_5: AAA domain (dy 97.3 0.00085 1.8E-08 50.7 6.6 42 176-222 2-43 (139)
171 PRK05480 uridine/cytidine kina 97.3 0.00028 6.1E-09 57.4 4.2 27 171-197 4-30 (209)
172 KOG1969 DNA replication checkp 97.3 0.00095 2.1E-08 62.5 7.9 53 172-229 325-377 (877)
173 cd01394 radB RadB. The archaea 97.3 0.0015 3.3E-08 53.4 8.4 43 172-216 18-60 (218)
174 PRK10867 signal recognition pa 97.3 0.002 4.2E-08 58.1 9.7 27 172-198 99-125 (433)
175 PRK14971 DNA polymerase III su 97.3 0.0027 5.9E-08 59.9 11.1 51 147-197 12-63 (614)
176 PRK12422 chromosomal replicati 97.3 0.00096 2.1E-08 60.5 7.8 27 173-199 141-167 (445)
177 PRK12727 flagellar biosynthesi 97.3 0.0018 3.8E-08 59.4 9.4 26 173-198 350-375 (559)
178 PRK08233 hypothetical protein; 97.3 0.00027 5.9E-09 55.9 3.8 26 173-198 3-28 (182)
179 COG0542 clpA ATP-binding subun 97.3 0.0018 3.9E-08 61.8 9.7 100 152-261 491-602 (786)
180 PF00485 PRK: Phosphoribulokin 97.3 0.00027 5.9E-09 56.8 3.7 25 175-199 1-25 (194)
181 PRK12724 flagellar biosynthesi 97.3 0.0017 3.7E-08 58.0 9.0 25 173-197 223-247 (432)
182 PF13671 AAA_33: AAA domain; P 97.3 0.00028 6.1E-09 53.5 3.6 24 175-198 1-24 (143)
183 PRK06647 DNA polymerase III su 97.3 0.0029 6.4E-08 59.0 10.8 53 146-198 10-63 (563)
184 TIGR00235 udk uridine kinase. 97.3 0.00033 7.1E-09 56.9 4.1 28 171-198 4-31 (207)
185 CHL00095 clpC Clp protease ATP 97.2 0.0021 4.6E-08 62.9 10.3 47 152-198 509-564 (821)
186 PRK05541 adenylylsulfate kinas 97.2 0.00053 1.2E-08 54.1 5.2 36 172-209 6-41 (176)
187 PRK15455 PrkA family serine pr 97.2 0.00046 1E-08 63.6 5.3 48 151-198 75-128 (644)
188 PRK11034 clpA ATP-dependent Cl 97.2 0.0014 3.1E-08 63.1 8.8 46 153-198 459-513 (758)
189 COG0563 Adk Adenylate kinase a 97.2 0.00062 1.3E-08 54.0 5.3 25 175-199 2-26 (178)
190 PRK05642 DNA replication initi 97.2 0.0015 3.2E-08 54.2 7.8 38 173-212 45-82 (234)
191 KOG0735 AAA+-type ATPase [Post 97.2 0.0012 2.6E-08 61.7 7.8 71 173-261 431-503 (952)
192 TIGR00763 lon ATP-dependent pr 97.2 0.0023 5E-08 62.3 10.2 47 152-198 320-372 (775)
193 PF00006 ATP-synt_ab: ATP synt 97.2 0.0013 2.9E-08 53.6 7.2 85 173-261 15-114 (215)
194 PRK06762 hypothetical protein; 97.2 0.00037 8E-09 54.4 3.8 25 173-197 2-26 (166)
195 PTZ00301 uridine kinase; Provi 97.2 0.00038 8.1E-09 56.7 3.9 25 173-197 3-27 (210)
196 PRK11889 flhF flagellar biosyn 97.2 0.0031 6.8E-08 55.9 9.8 27 172-198 240-266 (436)
197 PRK04328 hypothetical protein; 97.2 0.0024 5.1E-08 53.5 8.8 41 172-214 22-62 (249)
198 cd00544 CobU Adenosylcobinamid 97.2 0.0027 5.8E-08 49.9 8.5 80 176-261 2-82 (169)
199 cd02019 NK Nucleoside/nucleoti 97.2 0.00039 8.3E-09 46.1 3.2 23 175-197 1-23 (69)
200 cd01135 V_A-ATPase_B V/A-type 97.2 0.003 6.6E-08 53.3 9.1 90 172-261 68-175 (276)
201 PRK07133 DNA polymerase III su 97.2 0.0031 6.8E-08 60.0 10.2 51 147-197 13-64 (725)
202 PF00154 RecA: recA bacterial 97.2 0.0028 6.1E-08 54.8 9.1 82 173-261 53-140 (322)
203 PRK03839 putative kinase; Prov 97.2 0.00039 8.4E-09 55.1 3.6 24 175-198 2-25 (180)
204 PRK06067 flagellar accessory p 97.2 0.0039 8.4E-08 51.6 9.8 49 172-224 24-72 (234)
205 TIGR01243 CDC48 AAA family ATP 97.2 0.0012 2.5E-08 63.9 7.5 48 151-198 177-237 (733)
206 PRK08451 DNA polymerase III su 97.2 0.0052 1.1E-07 56.8 11.2 51 147-197 9-60 (535)
207 PRK08927 fliI flagellum-specif 97.2 0.0028 6E-08 57.1 9.1 86 172-261 157-257 (442)
208 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00044 9.6E-09 55.0 3.7 26 172-197 2-27 (188)
209 PRK05563 DNA polymerase III su 97.1 0.0047 1E-07 57.8 10.9 53 146-198 10-63 (559)
210 cd01121 Sms Sms (bacterial rad 97.1 0.0024 5.2E-08 56.6 8.5 84 173-261 82-167 (372)
211 PRK12597 F0F1 ATP synthase sub 97.1 0.0031 6.7E-08 57.2 9.3 89 172-261 142-246 (461)
212 PRK05703 flhF flagellar biosyn 97.1 0.0024 5.3E-08 57.6 8.7 26 173-198 221-246 (424)
213 PRK14086 dnaA chromosomal repl 97.1 0.0021 4.7E-08 60.0 8.4 25 174-198 315-339 (617)
214 PRK08972 fliI flagellum-specif 97.1 0.0019 4.1E-08 58.0 7.8 86 172-261 161-261 (444)
215 COG0194 Gmk Guanylate kinase [ 97.1 0.0036 7.7E-08 49.4 8.3 25 173-197 4-28 (191)
216 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.4E-08 53.2 5.7 25 174-198 3-27 (190)
217 PRK14721 flhF flagellar biosyn 97.1 0.0057 1.2E-07 54.9 10.8 25 173-197 191-215 (420)
218 COG0468 RecA RecA/RadA recombi 97.1 0.0068 1.5E-07 51.4 10.5 49 172-222 59-107 (279)
219 PRK05439 pantothenate kinase; 97.1 0.0057 1.2E-07 52.7 10.2 28 171-198 84-111 (311)
220 KOG0989 Replication factor C, 97.1 0.00099 2.1E-08 56.4 5.3 70 146-215 30-100 (346)
221 PF03215 Rad17: Rad17 cell cyc 97.1 0.00099 2.2E-08 61.4 5.8 60 147-210 14-78 (519)
222 PRK10536 hypothetical protein; 97.1 0.002 4.3E-08 53.8 7.0 57 149-207 52-108 (262)
223 TIGR03305 alt_F1F0_F1_bet alte 97.1 0.0036 7.9E-08 56.4 9.2 89 172-261 137-241 (449)
224 PRK14974 cell division protein 97.1 0.0049 1.1E-07 53.8 9.7 57 172-231 139-197 (336)
225 PF06309 Torsin: Torsin; Inte 97.0 0.0016 3.5E-08 48.2 5.5 45 153-197 26-77 (127)
226 KOG0731 AAA+-type ATPase conta 97.0 0.0026 5.7E-08 60.4 8.2 49 151-199 310-370 (774)
227 PRK08903 DnaA regulatory inact 97.0 0.0013 2.8E-08 54.1 5.7 48 151-198 17-67 (227)
228 PRK06995 flhF flagellar biosyn 97.0 0.0055 1.2E-07 55.9 10.1 26 173-198 256-281 (484)
229 PRK04040 adenylate kinase; Pro 97.0 0.00065 1.4E-08 54.4 3.7 26 173-198 2-27 (188)
230 COG0470 HolB ATPase involved i 97.0 0.0074 1.6E-07 52.2 10.6 77 154-230 3-103 (325)
231 PRK12726 flagellar biosynthesi 97.0 0.0072 1.6E-07 53.4 10.2 58 172-231 205-263 (407)
232 PRK00625 shikimate kinase; Pro 97.0 0.00068 1.5E-08 53.5 3.6 24 175-198 2-25 (173)
233 cd01124 KaiC KaiC is a circadi 97.0 0.0033 7.1E-08 49.9 7.6 45 175-223 1-45 (187)
234 cd02023 UMPK Uridine monophosp 97.0 0.00056 1.2E-08 55.1 3.0 23 175-197 1-23 (198)
235 PF13086 AAA_11: AAA domain; P 97.0 0.0018 4E-08 52.9 6.1 52 175-226 19-75 (236)
236 PF03205 MobB: Molybdopterin g 97.0 0.0017 3.6E-08 49.5 5.3 39 174-213 1-39 (140)
237 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0052 1.1E-07 56.4 9.5 27 172-198 258-284 (489)
238 PF12775 AAA_7: P-loop contain 97.0 0.00065 1.4E-08 57.6 3.3 57 162-221 23-79 (272)
239 PRK10463 hydrogenase nickel in 97.0 0.0077 1.7E-07 51.3 9.7 35 164-198 95-129 (290)
240 PF08433 KTI12: Chromatin asso 97.0 0.0033 7.1E-08 53.2 7.5 26 174-199 2-27 (270)
241 PRK09280 F0F1 ATP synthase sub 97.0 0.0066 1.4E-07 55.0 9.8 89 172-261 143-247 (463)
242 PRK09519 recA DNA recombinatio 97.0 0.0046 1E-07 59.4 9.2 83 172-261 59-147 (790)
243 PRK12723 flagellar biosynthesi 97.0 0.0065 1.4E-07 54.1 9.6 27 172-198 173-199 (388)
244 PRK00131 aroK shikimate kinase 97.0 0.00088 1.9E-08 52.4 3.8 26 173-198 4-29 (175)
245 PRK06936 type III secretion sy 97.0 0.0051 1.1E-07 55.3 9.0 86 172-261 161-261 (439)
246 PRK12678 transcription termina 97.0 0.0041 8.9E-08 57.5 8.4 97 164-261 406-512 (672)
247 COG0572 Udk Uridine kinase [Nu 96.9 0.00095 2.1E-08 54.2 3.9 28 172-199 7-34 (218)
248 PRK10787 DNA-binding ATP-depen 96.9 0.0056 1.2E-07 59.4 9.8 47 152-198 322-374 (784)
249 TIGR01243 CDC48 AAA family ATP 96.9 0.0057 1.2E-07 59.2 9.9 47 152-198 453-512 (733)
250 PRK13765 ATP-dependent proteas 96.9 0.0022 4.8E-08 60.5 6.9 78 148-229 27-104 (637)
251 PRK08149 ATP synthase SpaL; Va 96.9 0.0061 1.3E-07 54.8 9.3 86 172-261 150-250 (428)
252 TIGR02902 spore_lonB ATP-depen 96.9 0.0012 2.6E-08 61.4 4.9 52 147-198 60-111 (531)
253 TIGR00390 hslU ATP-dependent p 96.9 0.0037 8E-08 55.8 7.7 47 153-199 13-73 (441)
254 KOG3347 Predicted nucleotide k 96.9 0.00096 2.1E-08 50.6 3.4 26 173-198 7-32 (176)
255 PRK14723 flhF flagellar biosyn 96.9 0.0068 1.5E-07 58.1 9.9 59 173-232 185-245 (767)
256 TIGR02322 phosphon_PhnN phosph 96.9 0.00092 2E-08 52.9 3.6 25 174-198 2-26 (179)
257 cd02020 CMPK Cytidine monophos 96.9 0.00083 1.8E-08 51.0 3.1 24 175-198 1-24 (147)
258 PF13481 AAA_25: AAA domain; P 96.9 0.01 2.2E-07 47.3 9.7 49 174-224 33-89 (193)
259 PF00158 Sigma54_activat: Sigm 96.9 0.0048 1E-07 48.4 7.5 68 155-225 2-71 (168)
260 cd01132 F1_ATPase_alpha F1 ATP 96.9 0.011 2.3E-07 50.0 9.8 86 172-261 68-170 (274)
261 COG3899 Predicted ATPase [Gene 96.9 0.007 1.5E-07 59.4 10.0 47 153-199 1-50 (849)
262 cd02027 APSK Adenosine 5'-phos 96.9 0.0044 9.4E-08 47.6 7.0 24 175-198 1-24 (149)
263 TIGR02655 circ_KaiC circadian 96.9 0.0067 1.4E-07 55.8 9.4 85 172-261 262-362 (484)
264 PRK06002 fliI flagellum-specif 96.9 0.0044 9.5E-08 55.9 7.9 86 173-261 165-263 (450)
265 COG4608 AppF ABC-type oligopep 96.9 0.0026 5.7E-08 53.1 6.0 85 172-260 38-135 (268)
266 TIGR01425 SRP54_euk signal rec 96.9 0.0081 1.7E-07 54.0 9.5 27 172-198 99-125 (429)
267 TIGR00064 ftsY signal recognit 96.9 0.014 3E-07 49.5 10.5 28 171-198 70-97 (272)
268 PTZ00185 ATPase alpha subunit; 96.9 0.013 2.8E-07 53.6 10.7 90 172-261 188-298 (574)
269 PRK06217 hypothetical protein; 96.9 0.0011 2.5E-08 52.7 3.6 35 174-209 2-38 (183)
270 PRK13531 regulatory ATPase Rav 96.9 0.0023 4.9E-08 58.1 5.9 51 152-204 20-70 (498)
271 CHL00081 chlI Mg-protoporyphyr 96.8 0.0015 3.3E-08 57.1 4.7 48 150-197 15-62 (350)
272 cd00227 CPT Chloramphenicol (C 96.8 0.0011 2.5E-08 52.2 3.5 25 174-198 3-27 (175)
273 COG0542 clpA ATP-binding subun 96.8 0.0026 5.7E-08 60.7 6.4 49 150-198 168-216 (786)
274 PRK13949 shikimate kinase; Pro 96.8 0.0012 2.6E-08 52.0 3.5 25 174-198 2-26 (169)
275 KOG0738 AAA+-type ATPase [Post 96.8 0.0072 1.6E-07 53.0 8.5 28 172-199 244-271 (491)
276 cd02024 NRK1 Nicotinamide ribo 96.8 0.00098 2.1E-08 53.2 3.1 23 175-197 1-23 (187)
277 cd01131 PilT Pilus retraction 96.8 0.0031 6.8E-08 50.9 6.1 25 174-198 2-26 (198)
278 PRK00889 adenylylsulfate kinas 96.8 0.0013 2.9E-08 51.8 3.9 27 172-198 3-29 (175)
279 PF14516 AAA_35: AAA-like doma 96.8 0.044 9.5E-07 47.9 13.6 108 151-261 10-136 (331)
280 TIGR03496 FliI_clade1 flagella 96.8 0.005 1.1E-07 55.2 7.8 86 172-261 136-236 (411)
281 PF06745 KaiC: KaiC; InterPro 96.8 0.0027 5.9E-08 52.2 5.8 85 172-261 18-124 (226)
282 KOG0739 AAA+-type ATPase [Post 96.8 0.0083 1.8E-07 50.9 8.6 45 154-198 135-191 (439)
283 PRK05922 type III secretion sy 96.8 0.0098 2.1E-07 53.5 9.7 86 172-261 156-256 (434)
284 PRK05688 fliI flagellum-specif 96.8 0.0074 1.6E-07 54.5 8.8 86 172-261 167-267 (451)
285 TIGR03263 guanyl_kin guanylate 96.8 0.00099 2.1E-08 52.7 3.0 23 174-196 2-24 (180)
286 TIGR00764 lon_rel lon-related 96.8 0.0043 9.4E-08 58.5 7.7 76 150-229 16-91 (608)
287 cd01134 V_A-ATPase_A V/A-type 96.8 0.014 3E-07 50.9 10.2 49 172-224 156-205 (369)
288 cd01136 ATPase_flagellum-secre 96.8 0.0085 1.8E-07 52.0 8.9 86 172-261 68-168 (326)
289 COG1703 ArgK Putative periplas 96.8 0.0025 5.4E-08 53.9 5.4 59 163-221 39-99 (323)
290 cd02021 GntK Gluconate kinase 96.8 0.0011 2.3E-08 50.8 3.0 23 175-197 1-23 (150)
291 PF13245 AAA_19: Part of AAA d 96.8 0.0036 7.8E-08 42.3 5.2 26 172-197 9-35 (76)
292 TIGR01040 V-ATPase_V1_B V-type 96.8 0.0093 2E-07 53.8 9.3 90 172-261 140-256 (466)
293 TIGR03575 selen_PSTK_euk L-ser 96.8 0.0054 1.2E-07 53.6 7.6 23 176-198 2-24 (340)
294 PTZ00088 adenylate kinase 1; P 96.8 0.0013 2.9E-08 54.2 3.7 24 175-198 8-31 (229)
295 PRK13947 shikimate kinase; Pro 96.8 0.0012 2.6E-08 51.7 3.3 24 175-198 3-26 (171)
296 PF00910 RNA_helicase: RNA hel 96.8 0.0012 2.5E-08 47.8 2.9 23 176-198 1-23 (107)
297 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.9E-08 53.7 3.6 25 174-198 4-28 (215)
298 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0086 1.9E-07 55.3 9.0 27 173-199 545-571 (802)
299 cd02028 UMPK_like Uridine mono 96.8 0.0011 2.4E-08 52.6 3.0 24 175-198 1-24 (179)
300 TIGR02030 BchI-ChlI magnesium 96.8 0.0028 6.1E-08 55.4 5.7 47 151-197 3-49 (337)
301 COG1428 Deoxynucleoside kinase 96.8 0.0014 2.9E-08 52.8 3.4 27 173-199 4-30 (216)
302 PF01583 APS_kinase: Adenylyls 96.8 0.0023 5E-08 49.4 4.6 28 173-200 2-29 (156)
303 PRK09087 hypothetical protein; 96.8 0.0033 7.1E-08 51.9 5.8 27 172-198 43-69 (226)
304 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.02 4.2E-07 47.2 10.5 40 172-213 19-58 (229)
305 KOG1532 GTPase XAB1, interacts 96.8 0.002 4.4E-08 53.8 4.4 63 172-234 18-89 (366)
306 PRK14529 adenylate kinase; Pro 96.7 0.0078 1.7E-07 49.5 7.8 25 175-199 2-26 (223)
307 PRK11823 DNA repair protein Ra 96.7 0.007 1.5E-07 55.0 8.3 84 173-261 80-165 (446)
308 PRK00300 gmk guanylate kinase; 96.7 0.0015 3.3E-08 52.8 3.6 26 172-197 4-29 (205)
309 PRK14527 adenylate kinase; Pro 96.7 0.0018 3.9E-08 51.9 4.0 28 171-198 4-31 (191)
310 PRK06851 hypothetical protein; 96.7 0.043 9.3E-07 48.5 12.8 40 170-210 211-250 (367)
311 TIGR01041 ATP_syn_B_arch ATP s 96.7 0.012 2.7E-07 53.3 9.7 90 172-261 140-247 (458)
312 cd00464 SK Shikimate kinase (S 96.7 0.0015 3.3E-08 50.1 3.4 23 176-198 2-24 (154)
313 PF03308 ArgK: ArgK protein; 96.7 0.003 6.4E-08 52.6 5.2 61 161-221 15-77 (266)
314 PRK05342 clpX ATP-dependent pr 96.7 0.0055 1.2E-07 55.0 7.4 47 152-198 71-133 (412)
315 PF00625 Guanylate_kin: Guanyl 96.7 0.0025 5.5E-08 50.7 4.7 37 173-211 2-38 (183)
316 PRK03846 adenylylsulfate kinas 96.7 0.0019 4.1E-08 52.1 4.0 29 170-198 21-49 (198)
317 PRK10751 molybdopterin-guanine 96.7 0.0018 4E-08 50.9 3.8 28 172-199 5-32 (173)
318 COG0467 RAD55 RecA-superfamily 96.7 0.0028 6.1E-08 53.3 5.2 42 171-214 21-62 (260)
319 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.012 2.5E-07 49.7 8.8 40 172-213 35-74 (259)
320 TIGR00150 HI0065_YjeE ATPase, 96.7 0.004 8.7E-08 46.8 5.3 28 172-199 21-48 (133)
321 PF02562 PhoH: PhoH-like prote 96.7 0.0028 6.1E-08 51.2 4.8 52 157-210 5-56 (205)
322 PRK13975 thymidylate kinase; P 96.7 0.0017 3.8E-08 52.0 3.7 25 174-198 3-27 (196)
323 PRK09099 type III secretion sy 96.7 0.0071 1.5E-07 54.6 7.8 86 172-261 162-262 (441)
324 COG0237 CoaE Dephospho-CoA kin 96.7 0.0078 1.7E-07 48.6 7.3 23 173-195 2-24 (201)
325 COG3640 CooC CO dehydrogenase 96.7 0.0043 9.3E-08 50.7 5.8 41 175-216 2-42 (255)
326 TIGR02640 gas_vesic_GvpN gas v 96.7 0.0079 1.7E-07 50.7 7.8 54 161-221 11-64 (262)
327 TIGR00073 hypB hydrogenase acc 96.7 0.0022 4.8E-08 52.1 4.2 31 168-198 17-47 (207)
328 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.2E-08 52.1 3.1 24 174-197 3-26 (186)
329 TIGR01039 atpD ATP synthase, F 96.7 0.013 2.9E-07 52.9 9.4 89 172-261 142-246 (461)
330 TIGR01351 adk adenylate kinase 96.7 0.0088 1.9E-07 48.6 7.7 23 176-198 2-24 (210)
331 PRK05057 aroK shikimate kinase 96.7 0.0019 4.1E-08 50.9 3.6 26 173-198 4-29 (172)
332 TIGR01313 therm_gnt_kin carboh 96.7 0.0014 3E-08 51.0 2.8 22 176-197 1-22 (163)
333 KOG2228 Origin recognition com 96.7 0.0092 2E-07 51.4 7.8 105 153-260 25-145 (408)
334 PRK13407 bchI magnesium chelat 96.7 0.0028 6.2E-08 55.2 5.0 50 148-197 4-53 (334)
335 COG1936 Predicted nucleotide k 96.6 0.0015 3.2E-08 50.8 2.8 20 175-194 2-21 (180)
336 PRK07594 type III secretion sy 96.6 0.007 1.5E-07 54.5 7.4 86 172-261 154-254 (433)
337 PF03266 NTPase_1: NTPase; In 96.6 0.0031 6.6E-08 49.6 4.6 23 176-198 2-24 (168)
338 PRK13695 putative NTPase; Prov 96.6 0.0032 7E-08 49.6 4.7 25 175-199 2-26 (174)
339 PLN02165 adenylate isopentenyl 96.6 0.003 6.5E-08 54.7 4.8 30 169-198 39-68 (334)
340 PRK05800 cobU adenosylcobinami 96.6 0.0091 2E-07 47.0 7.2 48 175-228 3-50 (170)
341 PF05970 PIF1: PIF1-like helic 96.6 0.0081 1.8E-07 53.2 7.6 39 161-199 10-48 (364)
342 PRK08472 fliI flagellum-specif 96.6 0.012 2.5E-07 53.1 8.5 84 171-261 155-255 (434)
343 cd00071 GMPK Guanosine monopho 96.6 0.0017 3.7E-08 49.2 2.8 23 175-197 1-23 (137)
344 COG2607 Predicted ATPase (AAA+ 96.6 0.012 2.5E-07 48.5 7.6 51 149-199 57-111 (287)
345 TIGR03497 FliI_clade2 flagella 96.6 0.01 2.2E-07 53.3 8.1 86 172-261 136-236 (413)
346 PF08477 Miro: Miro-like prote 96.6 0.0022 4.7E-08 46.8 3.3 23 176-198 2-24 (119)
347 TIGR00176 mobB molybdopterin-g 96.6 0.0038 8.3E-08 48.3 4.8 36 175-211 1-36 (155)
348 PRK06620 hypothetical protein; 96.6 0.0018 3.9E-08 53.0 3.0 25 174-198 45-69 (214)
349 PRK10416 signal recognition pa 96.6 0.028 6E-07 48.8 10.5 27 172-198 113-139 (318)
350 TIGR03498 FliI_clade3 flagella 96.5 0.0087 1.9E-07 53.7 7.4 86 172-261 139-239 (418)
351 PRK06793 fliI flagellum-specif 96.5 0.012 2.6E-07 53.0 8.2 86 172-261 155-255 (432)
352 PRK05201 hslU ATP-dependent pr 96.5 0.0079 1.7E-07 53.8 7.0 47 152-198 15-75 (443)
353 COG1126 GlnQ ABC-type polar am 96.5 0.0021 4.5E-08 52.0 3.1 27 172-198 27-53 (240)
354 PRK04182 cytidylate kinase; Pr 96.5 0.0025 5.3E-08 50.2 3.5 24 175-198 2-25 (180)
355 PRK04196 V-type ATP synthase s 96.5 0.013 2.9E-07 53.2 8.5 89 172-261 142-249 (460)
356 PRK12339 2-phosphoglycerate ki 96.5 0.0028 6.1E-08 51.1 3.8 25 173-197 3-27 (197)
357 cd01672 TMPK Thymidine monopho 96.5 0.0094 2E-07 47.5 6.9 24 175-198 2-25 (200)
358 TIGR01650 PD_CobS cobaltochela 96.5 0.011 2.5E-07 51.1 7.7 62 152-220 45-106 (327)
359 KOG1514 Origin recognition com 96.5 0.031 6.8E-07 52.5 10.8 108 151-261 395-517 (767)
360 TIGR00416 sms DNA repair prote 96.5 0.011 2.3E-07 54.0 7.8 85 172-261 93-179 (454)
361 PRK07196 fliI flagellum-specif 96.5 0.0094 2E-07 53.7 7.3 86 172-261 154-254 (434)
362 PF03029 ATP_bind_1: Conserved 96.5 0.0025 5.5E-08 52.9 3.5 34 178-213 1-34 (238)
363 KOG0729 26S proteasome regulat 96.5 0.025 5.4E-07 47.3 9.1 27 172-198 210-236 (435)
364 PRK13948 shikimate kinase; Pro 96.5 0.0032 7E-08 50.1 3.9 28 171-198 8-35 (182)
365 PLN02200 adenylate kinase fami 96.5 0.003 6.6E-08 52.4 3.9 27 172-198 42-68 (234)
366 COG1124 DppF ABC-type dipeptid 96.5 0.0024 5.1E-08 52.5 3.1 24 172-195 32-55 (252)
367 PF07726 AAA_3: ATPase family 96.5 0.0028 6E-08 47.1 3.2 23 176-198 2-24 (131)
368 PRK13946 shikimate kinase; Pro 96.5 0.0027 5.9E-08 50.5 3.5 26 173-198 10-35 (184)
369 PRK14737 gmk guanylate kinase; 96.5 0.0028 6.2E-08 50.6 3.5 26 172-197 3-28 (186)
370 cd01428 ADK Adenylate kinase ( 96.5 0.0024 5.2E-08 51.0 3.1 23 176-198 2-24 (194)
371 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0028 6.1E-08 45.7 3.1 22 173-194 15-36 (107)
372 COG1116 TauB ABC-type nitrate/ 96.5 0.0025 5.4E-08 52.6 3.2 24 172-195 28-51 (248)
373 CHL00060 atpB ATP synthase CF1 96.5 0.016 3.5E-07 52.8 8.5 89 172-261 160-271 (494)
374 TIGR02655 circ_KaiC circadian 96.5 0.02 4.2E-07 52.8 9.3 47 172-223 20-68 (484)
375 cd00984 DnaB_C DnaB helicase C 96.5 0.04 8.7E-07 45.6 10.5 50 173-225 13-62 (242)
376 PRK14532 adenylate kinase; Pro 96.4 0.0028 6E-08 50.6 3.3 23 176-198 3-25 (188)
377 KOG0736 Peroxisome assembly fa 96.4 0.028 6.1E-07 53.4 10.1 89 153-261 673-773 (953)
378 PRK07471 DNA polymerase III su 96.4 0.006 1.3E-07 54.0 5.6 51 148-198 15-66 (365)
379 COG1158 Rho Transcription term 96.4 0.056 1.2E-06 46.6 11.0 98 162-260 161-268 (422)
380 PF13521 AAA_28: AAA domain; P 96.4 0.0025 5.5E-08 49.6 2.9 21 176-196 2-22 (163)
381 PRK09825 idnK D-gluconate kina 96.4 0.0031 6.7E-08 49.9 3.4 25 174-198 4-28 (176)
382 PRK07721 fliI flagellum-specif 96.4 0.016 3.5E-07 52.4 8.4 88 171-261 156-257 (438)
383 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0029 6.2E-08 51.7 3.3 24 173-196 29-52 (213)
384 PRK14531 adenylate kinase; Pro 96.4 0.0035 7.6E-08 49.9 3.7 25 174-198 3-27 (183)
385 TIGR00041 DTMP_kinase thymidyl 96.4 0.014 2.9E-07 46.7 7.1 26 174-199 4-29 (195)
386 PRK08356 hypothetical protein; 96.4 0.0035 7.5E-08 50.4 3.6 22 173-194 5-26 (195)
387 PRK09435 membrane ATPase/prote 96.4 0.013 2.8E-07 51.1 7.4 37 163-199 44-82 (332)
388 PRK14738 gmk guanylate kinase; 96.4 0.0035 7.6E-08 50.9 3.7 25 172-196 12-36 (206)
389 PRK03731 aroL shikimate kinase 96.4 0.0035 7.6E-08 49.1 3.6 25 174-198 3-27 (171)
390 PRK09302 circadian clock prote 96.4 0.029 6.3E-07 52.0 10.1 84 173-261 273-372 (509)
391 cd01122 GP4d_helicase GP4d_hel 96.4 0.044 9.5E-07 46.3 10.5 51 173-226 30-80 (271)
392 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0036 7.8E-08 48.8 3.6 24 175-198 2-25 (171)
393 TIGR02858 spore_III_AA stage I 96.4 0.034 7.4E-07 47.1 9.6 37 162-198 99-136 (270)
394 cd01125 repA Hexameric Replica 96.4 0.033 7.2E-07 46.2 9.5 23 175-197 3-25 (239)
395 PRK06820 type III secretion sy 96.4 0.021 4.5E-07 51.6 8.7 86 172-261 162-262 (440)
396 KOG2170 ATPase of the AAA+ sup 96.4 0.0097 2.1E-07 50.4 6.1 45 154-198 84-135 (344)
397 TIGR03574 selen_PSTK L-seryl-t 96.4 0.003 6.6E-08 52.8 3.2 24 175-198 1-24 (249)
398 PRK00698 tmk thymidylate kinas 96.4 0.013 2.7E-07 47.2 6.8 26 174-199 4-29 (205)
399 TIGR00750 lao LAO/AO transport 96.3 0.01 2.2E-07 51.1 6.5 30 170-199 31-60 (300)
400 PF00005 ABC_tran: ABC transpo 96.3 0.0029 6.2E-08 47.5 2.7 25 173-197 11-35 (137)
401 PRK06761 hypothetical protein; 96.3 0.0086 1.9E-07 50.9 5.8 25 174-198 4-28 (282)
402 COG0464 SpoVK ATPases of the A 96.3 0.009 2E-07 55.1 6.5 27 172-198 275-301 (494)
403 PF10662 PduV-EutP: Ethanolami 96.3 0.0034 7.5E-08 47.6 3.0 24 174-197 2-25 (143)
404 TIGR03324 alt_F1F0_F1_al alter 96.3 0.024 5.3E-07 51.8 8.9 86 172-261 161-263 (497)
405 COG3903 Predicted ATPase [Gene 96.3 0.006 1.3E-07 53.8 4.8 83 172-260 13-96 (414)
406 COG0593 DnaA ATPase involved i 96.3 0.0089 1.9E-07 53.2 5.9 28 172-199 112-139 (408)
407 COG1224 TIP49 DNA helicase TIP 96.3 0.011 2.4E-07 51.3 6.2 54 150-203 37-95 (450)
408 CHL00059 atpA ATP synthase CF1 96.3 0.019 4.1E-07 52.2 8.1 86 172-261 140-242 (485)
409 TIGR02546 III_secr_ATP type II 96.3 0.03 6.6E-07 50.5 9.2 87 171-261 143-244 (422)
410 PF03193 DUF258: Protein of un 96.3 0.0079 1.7E-07 46.7 4.7 33 161-196 26-58 (161)
411 COG1120 FepC ABC-type cobalami 96.3 0.0038 8.3E-08 52.2 3.2 26 172-197 27-52 (258)
412 PF01078 Mg_chelatase: Magnesi 96.2 0.01 2.2E-07 47.9 5.5 43 151-195 2-44 (206)
413 TIGR01026 fliI_yscN ATPase Fli 96.2 0.018 3.9E-07 52.1 7.7 86 172-261 162-262 (440)
414 PRK15453 phosphoribulokinase; 96.2 0.0057 1.2E-07 51.8 4.1 28 171-198 3-30 (290)
415 COG1763 MobB Molybdopterin-gua 96.2 0.0051 1.1E-07 47.8 3.5 28 173-200 2-29 (161)
416 PRK02496 adk adenylate kinase; 96.2 0.0053 1.2E-07 48.7 3.8 24 175-198 3-26 (184)
417 PRK07399 DNA polymerase III su 96.2 0.066 1.4E-06 46.4 10.8 46 152-197 4-50 (314)
418 PHA02530 pseT polynucleotide k 96.2 0.0047 1E-07 53.0 3.7 24 174-197 3-26 (300)
419 PRK14528 adenylate kinase; Pro 96.2 0.0053 1.1E-07 49.0 3.7 25 174-198 2-26 (186)
420 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.01 2.2E-07 51.7 5.6 47 152-198 61-113 (358)
421 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.0042 9.2E-08 50.7 3.2 25 173-197 30-54 (218)
422 PF07693 KAP_NTPase: KAP famil 96.2 0.032 7E-07 48.3 8.9 42 159-200 3-47 (325)
423 COG0714 MoxR-like ATPases [Gen 96.2 0.016 3.4E-07 50.6 6.9 63 154-223 26-88 (329)
424 PRK08154 anaerobic benzoate ca 96.2 0.0092 2E-07 51.6 5.4 27 172-198 132-158 (309)
425 PRK07960 fliI flagellum-specif 96.2 0.012 2.7E-07 53.1 6.2 86 172-261 174-274 (455)
426 PF13604 AAA_30: AAA domain; P 96.2 0.0075 1.6E-07 48.6 4.5 36 165-200 10-45 (196)
427 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0044 9.6E-08 50.3 3.2 26 172-197 26-51 (211)
428 cd02029 PRK_like Phosphoribulo 96.2 0.036 7.7E-07 46.7 8.5 24 175-198 1-24 (277)
429 PF00406 ADK: Adenylate kinase 96.2 0.0045 9.7E-08 47.5 3.0 21 178-198 1-21 (151)
430 PRK01184 hypothetical protein; 96.2 0.0044 9.6E-08 49.2 3.1 18 174-191 2-19 (184)
431 COG2019 AdkA Archaeal adenylat 96.2 0.0048 1E-07 47.8 3.1 25 173-197 4-28 (189)
432 PLN02796 D-glycerate 3-kinase 96.2 0.0055 1.2E-07 53.4 3.8 28 172-199 99-126 (347)
433 PLN02348 phosphoribulokinase 96.2 0.0058 1.3E-07 54.1 4.0 29 170-198 46-74 (395)
434 cd03116 MobB Molybdenum is an 96.2 0.0069 1.5E-07 47.1 4.0 26 174-199 2-27 (159)
435 cd02022 DPCK Dephospho-coenzym 96.2 0.0043 9.4E-08 49.2 3.0 21 175-195 1-21 (179)
436 PRK08099 bifunctional DNA-bind 96.1 0.0051 1.1E-07 55.1 3.6 29 170-198 216-244 (399)
437 TIGR00960 3a0501s02 Type II (G 96.1 0.0047 1E-07 50.4 3.2 26 172-197 28-53 (216)
438 TIGR01166 cbiO cobalt transpor 96.1 0.0049 1.1E-07 49.2 3.2 24 173-196 18-41 (190)
439 COG4240 Predicted kinase [Gene 96.1 0.071 1.5E-06 43.6 9.6 82 170-252 47-133 (300)
440 PRK00279 adk adenylate kinase; 96.1 0.006 1.3E-07 49.8 3.6 24 175-198 2-25 (215)
441 KOG0743 AAA+-type ATPase [Post 96.1 0.11 2.4E-06 46.5 11.6 25 174-198 236-260 (457)
442 TIGR00962 atpA proton transloc 96.1 0.036 7.9E-07 50.9 9.0 86 172-261 160-262 (501)
443 COG3267 ExeA Type II secretory 96.1 0.074 1.6E-06 44.2 9.8 86 170-260 48-139 (269)
444 PF14532 Sigma54_activ_2: Sigm 96.1 0.0038 8.3E-08 47.2 2.2 43 156-198 2-46 (138)
445 PF06068 TIP49: TIP49 C-termin 96.1 0.011 2.4E-07 51.7 5.3 50 151-200 23-77 (398)
446 cd04139 RalA_RalB RalA/RalB su 96.1 0.0044 9.5E-08 47.6 2.6 23 175-197 2-24 (164)
447 cd03114 ArgK-like The function 96.1 0.0087 1.9E-07 45.9 4.2 25 175-199 1-25 (148)
448 COG0465 HflB ATP-dependent Zn 96.1 0.015 3.4E-07 54.1 6.4 51 150-200 148-210 (596)
449 COG1066 Sms Predicted ATP-depe 96.1 0.023 5.1E-07 50.2 7.2 83 173-261 93-177 (456)
450 PRK09302 circadian clock prote 96.1 0.045 9.8E-07 50.7 9.6 50 172-224 30-79 (509)
451 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0057 1.2E-07 44.6 3.0 21 176-196 2-22 (116)
452 cd03229 ABC_Class3 This class 96.1 0.0057 1.2E-07 48.4 3.2 25 172-196 25-49 (178)
453 COG1136 SalX ABC-type antimicr 96.1 0.0056 1.2E-07 50.2 3.2 24 172-195 30-53 (226)
454 cd03238 ABC_UvrA The excision 96.1 0.0056 1.2E-07 48.5 3.1 24 172-195 20-43 (176)
455 TIGR00017 cmk cytidylate kinas 96.1 0.0067 1.4E-07 49.7 3.6 25 174-198 3-27 (217)
456 TIGR01420 pilT_fam pilus retra 96.1 0.026 5.5E-07 49.6 7.5 27 172-198 121-147 (343)
457 PRK05537 bifunctional sulfate 96.0 0.013 2.9E-07 54.9 6.0 47 152-198 369-417 (568)
458 cd03261 ABC_Org_Solvent_Resist 96.0 0.0055 1.2E-07 50.7 3.2 24 173-196 26-49 (235)
459 COG0003 ArsA Predicted ATPase 96.0 0.017 3.7E-07 50.0 6.2 48 173-222 2-49 (322)
460 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0063 1.4E-07 49.6 3.4 25 171-196 22-46 (214)
461 PRK14493 putative bifunctional 96.0 0.0073 1.6E-07 51.2 3.9 28 174-201 2-29 (274)
462 PLN02318 phosphoribulokinase/u 96.0 0.0064 1.4E-07 56.5 3.7 28 170-197 62-89 (656)
463 TIGR02315 ABC_phnC phosphonate 96.0 0.0057 1.2E-07 50.8 3.2 24 173-196 28-51 (243)
464 TIGR02673 FtsE cell division A 96.0 0.0059 1.3E-07 49.7 3.2 24 173-196 28-51 (214)
465 PRK10733 hflB ATP-dependent me 96.0 0.019 4.2E-07 54.7 7.1 25 174-198 186-210 (644)
466 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0058 1.3E-07 48.4 3.0 26 172-197 24-49 (177)
467 COG1100 GTPase SAR1 and relate 96.0 0.0045 9.7E-08 50.4 2.4 26 174-199 6-31 (219)
468 cd03263 ABC_subfamily_A The AB 96.0 0.006 1.3E-07 49.9 3.2 25 173-197 28-52 (220)
469 cd03269 ABC_putative_ATPase Th 96.0 0.0061 1.3E-07 49.5 3.2 26 172-197 25-50 (210)
470 PLN02924 thymidylate kinase 96.0 0.028 6.1E-07 46.1 7.1 53 173-226 16-68 (220)
471 cd01130 VirB11-like_ATPase Typ 96.0 0.01 2.2E-07 47.4 4.4 25 173-197 25-49 (186)
472 cd03293 ABC_NrtD_SsuB_transpor 96.0 0.006 1.3E-07 49.9 3.2 25 173-197 30-54 (220)
473 PRK13541 cytochrome c biogenes 96.0 0.0063 1.4E-07 48.9 3.2 25 173-197 26-50 (195)
474 PF13177 DNA_pol3_delta2: DNA 96.0 0.13 2.7E-06 40.1 10.5 42 156-197 1-43 (162)
475 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.0 0.0097 2.1E-07 46.7 4.2 33 163-195 5-37 (174)
476 KOG0651 26S proteasome regulat 96.0 0.013 2.7E-07 50.0 5.0 28 172-199 165-192 (388)
477 cd04155 Arl3 Arl3 subfamily. 96.0 0.0099 2.1E-07 46.3 4.2 25 172-196 13-37 (173)
478 PF10443 RNA12: RNA12 protein; 96.0 0.0092 2E-07 53.1 4.4 67 157-229 1-71 (431)
479 COG0541 Ffh Signal recognition 96.0 1.1 2.5E-05 40.2 18.2 59 172-233 99-159 (451)
480 cd04163 Era Era subfamily. Er 96.0 0.0072 1.6E-07 46.2 3.4 24 173-196 3-26 (168)
481 cd03256 ABC_PhnC_transporter A 96.0 0.0062 1.4E-07 50.5 3.2 25 172-196 26-50 (241)
482 TIGR00455 apsK adenylylsulfate 96.0 0.0087 1.9E-07 47.5 3.9 28 171-198 16-43 (184)
483 cd03264 ABC_drug_resistance_li 96.0 0.0058 1.3E-07 49.6 2.9 22 175-196 27-48 (211)
484 KOG0735 AAA+-type ATPase [Post 96.0 0.027 6E-07 53.0 7.4 68 173-260 701-768 (952)
485 cd03259 ABC_Carb_Solutes_like 96.0 0.0065 1.4E-07 49.4 3.2 25 172-196 25-49 (213)
486 smart00173 RAS Ras subfamily o 96.0 0.0067 1.4E-07 46.8 3.1 22 175-196 2-23 (164)
487 cd03235 ABC_Metallic_Cations A 96.0 0.0058 1.3E-07 49.7 2.9 26 172-197 24-49 (213)
488 cd03260 ABC_PstB_phosphate_tra 96.0 0.0066 1.4E-07 49.9 3.2 26 172-197 25-50 (227)
489 COG0703 AroK Shikimate kinase 96.0 0.0079 1.7E-07 47.1 3.4 25 174-198 3-27 (172)
490 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0066 1.4E-07 49.1 3.2 25 173-197 26-50 (205)
491 PRK13768 GTPase; Provisional 95.9 0.0089 1.9E-07 50.2 4.0 26 174-199 3-28 (253)
492 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0067 1.4E-07 49.6 3.2 25 172-196 30-54 (221)
493 PRK10584 putative ABC transpor 95.9 0.0067 1.4E-07 49.9 3.2 26 172-197 35-60 (228)
494 cd03292 ABC_FtsE_transporter F 95.9 0.0068 1.5E-07 49.3 3.2 26 172-197 26-51 (214)
495 cd01673 dNK Deoxyribonucleosid 95.9 0.0067 1.5E-07 48.5 3.1 23 175-197 1-23 (193)
496 TIGR01287 nifH nitrogenase iro 95.9 0.0061 1.3E-07 51.7 3.0 26 174-199 1-26 (275)
497 KOG0730 AAA+-type ATPase [Post 95.9 0.028 6E-07 52.4 7.3 29 171-199 466-494 (693)
498 cd03296 ABC_CysA_sulfate_impor 95.9 0.0068 1.5E-07 50.3 3.2 26 172-197 27-52 (239)
499 COG1373 Predicted ATPase (AAA+ 95.9 0.051 1.1E-06 48.7 9.0 39 159-198 24-62 (398)
500 PRK15429 formate hydrogenlyase 95.9 0.038 8.2E-07 53.2 8.7 48 151-198 375-424 (686)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-28 Score=232.75 Aligned_cols=229 Identities=25% Similarity=0.390 Sum_probs=175.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHhhhchhhhh----------------
Q 043094 30 YTSNFENLKTQVEKLEGEIMSMEHAVNDAERKCEEIEQNVQNWLASANKAIVEAKKFVGDEATE---------------- 93 (261)
Q Consensus 30 ~~~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~~~d~ed~ld~~~~~---------------- 93 (261)
....+.+.++.+..|++.|..+++++++++.++ .....+..|...++++.|++||.++.+...
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 345556667899999999999999999999986 356789999999999999999999865421
Q ss_pred -ccccccccC-CcchhhchhHHHHHHHHHHHHHhhhcCCCCccccccCCCcccccCCCC-cCCccccHHHHHHHHHHhcC
Q 043094 94 -NKHSFKGFC-PNLKMRRRLRKEAVRQLDAIVKLREDGRFERISHSIIPEDTLLMSNKG-YEDFESRISTLNDILGALRN 170 (261)
Q Consensus 94 -~~~~~~~~~-~~~~~~~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gr~~~~~~l~~~l~~ 170 (261)
+.-|+.++| .+...-+.+++++-.+...++.+..++.|..+.....|.+.....|.. ... +|.+..++++.+.|.+
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 112332333 334455667777777777777777665565554321122221122222 223 9999999999999998
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc-cCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCchHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK-NNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE---ESGSGRARSLFS 246 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~ 246 (261)
.+..+++|+||||+||||||+.++|+.. ++.+||.++||+||+.|+..+++++|+..++..... .+..+.+..|.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 8779999999999999999999999998 899999999999999999999999999998864332 223567888999
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.|. +||||||||||
T Consensus 257 ~L~-~krfllvLDDI 270 (889)
T KOG4658|consen 257 LLE-GKRFLLVLDDI 270 (889)
T ss_pred Hhc-cCceEEEEecc
Confidence 998 79999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.80 E-value=2.9e-19 Score=152.60 Aligned_cols=104 Identities=31% Similarity=0.507 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHhcC--CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 043094 157 RISTLNDILGALRN--PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR- 233 (261)
Q Consensus 157 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~- 233 (261)
|+.++++|.++|.+ .+.++|+|+||||+||||||+.+|++...+.+|+.++|+.++..++...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999996 789999999999999999999999997777899999999999999999999999999987743
Q ss_pred ---CCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 234 ---EESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 234 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
..+.......+.+.|. ++++|||||||
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv 110 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDV 110 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeee
Confidence 2344557788889997 68999999996
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=8.2e-13 Score=132.03 Aligned_cols=108 Identities=23% Similarity=0.393 Sum_probs=75.6
Q ss_pred CCcCCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe---CCC---------
Q 043094 149 KGYEDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM---SQS--------- 214 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~--------- 214 (261)
....+++|++..++++..+|. ..+.++|+||||||+||||||+.+|+... .+|+..+|+.- +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345679999999999998876 55789999999999999999999999876 57988877732 111
Q ss_pred --CC-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 215 --PD-IRKIQGEIADKLGLTFREESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 215 --~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
++ ...++.+++.++....... ......+++.|. +||+|||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv 305 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDL 305 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCC
Confidence 11 1234455555443221110 111245677887 79999999997
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=3.6e-10 Score=100.90 Aligned_cols=112 Identities=22% Similarity=0.161 Sum_probs=83.7
Q ss_pred CcCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 150 GYEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
.|..+.||+.+++.|...+. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45679999999999988874 34556788999999999999999999876433223467777777778889999999
Q ss_pred HHhCCC-CC--CCCchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 226 DKLGLT-FR--EESGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 226 ~~l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
.++... .+ ..+..+....+.+.+.. ++..+||||++
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~ 147 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDI 147 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 998752 21 22334556677777752 45688999985
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=9.4e-10 Score=97.20 Aligned_cols=112 Identities=22% Similarity=0.289 Sum_probs=81.1
Q ss_pred CcCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccC-CC--C-CEEEEEEeCCCCCHHHHH
Q 043094 150 GYEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNN-KL--F-DLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--F-~~~~wv~vs~~~~~~~i~ 221 (261)
.|..++||+.+++.|..++. +.....+.|+|++|+|||++++.+++..... .. . -..+|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 34579999999999998876 3455689999999999999999999876421 11 1 135788888777888999
Q ss_pred HHHHHHhC---CCCC--CCCchHHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 222 GEIADKLG---LTFR--EESGSGRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 222 ~~i~~~l~---~~~~--~~~~~~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..|+.++. ...+ ..+..+....+.+.+. .+++++||||++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~ 138 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEI 138 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 99999983 3222 1223344556666664 356789999985
No 6
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.08 E-value=5.7e-10 Score=97.35 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=65.6
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCchHH
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP--DIRKIQGEIADKLGLTFREESGSGR 240 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~ 240 (261)
+++++. -+.-....|+|++|+||||||+.||++...+ ||++++||.+++.+ .+.++++.|...+-......+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444444 2344678999999999999999999999865 89999999999987 7788888886322111111111111
Q ss_pred H------HHHHHHH-hCCCcEEEEEeCC
Q 043094 241 A------RSLFSRL-KKEKRILVILDNI 261 (261)
Q Consensus 241 ~------~~l~~~l-~~~kr~LlVlDdv 261 (261)
. -...+++ ..|++.||++|++
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 1 1122222 3579999999985
No 7
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.08 E-value=5.8e-10 Score=92.94 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=62.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCchH-------HHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS--PDIRKIQGEIADKLGLTFREESGSG-------RAR 242 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~-------~~~ 242 (261)
.-..+.|+|++|+|||||++.+|++.... +|+.++|+++++. +++.++++.+...+-....+.+... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999988764 8999999998776 7999999999332211111111111 111
Q ss_pred HHHHHHhCCCcEEEEEeCC
Q 043094 243 SLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 243 ~l~~~l~~~kr~LlVlDdv 261 (261)
........+++.++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 2222223579999999985
No 8
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.04 E-value=8.5e-10 Score=82.88 Aligned_cols=90 Identities=27% Similarity=0.415 Sum_probs=66.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---KLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE-ESGSGRARSLFSR 247 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 247 (261)
+.+.+.|+|.+|+|||++++.+.++.... ..-...+|++++...+...+...|+.+++..... .+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35688999999999999999999876421 0123467999988889999999999999977665 4556677888888
Q ss_pred HhCCCcEEEEEeCC
Q 043094 248 LKKEKRILVILDNI 261 (261)
Q Consensus 248 l~~~kr~LlVlDdv 261 (261)
+...+..+||+||+
T Consensus 83 l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 83 LDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHCTEEEEEEETT
T ss_pred HHhcCCeEEEEeCh
Confidence 87555669999985
No 9
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.5e-09 Score=90.98 Aligned_cols=111 Identities=25% Similarity=0.321 Sum_probs=87.9
Q ss_pred cCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 151 YEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
|..+.+|+.+++++...|. +..+..+.|+|.+|+|||+.++.+.+..+....=..+++|++-...++..++..|++
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 4458899999999887765 455556999999999999999999998874322122789999999999999999999
Q ss_pred HhC-CCCCCCCchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 227 KLG-LTFREESGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 227 ~l~-~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
+++ .+..+.+..+....+.+.+.. ++.++||||++
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi 132 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEV 132 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence 996 333445667778888888863 57888889985
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=1.7e-08 Score=85.28 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHH---
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFS--- 246 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~--- 246 (261)
......+.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..|+..++.+....+.......+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999887532 11 12333 334567889999999998876544333333344433
Q ss_pred -HHhCCCcEEEEEeCC
Q 043094 247 -RLKKEKRILVILDNI 261 (261)
Q Consensus 247 -~l~~~kr~LlVlDdv 261 (261)
.+..+++++||+||+
T Consensus 117 ~~~~~~~~~vliiDe~ 132 (269)
T TIGR03015 117 EQFAAGKRALLVVDEA 132 (269)
T ss_pred HHHhCCCCeEEEEECc
Confidence 333468899999985
No 11
>PTZ00202 tuzin; Provisional
Probab=98.86 E-value=5.8e-08 Score=85.77 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=72.7
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 146 MSNKGYEDFESRISTLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
..|.+...|+||+.++..|...|.+ ...+++.|+|++|+|||||++.+..... + ...+++. . +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp-r--g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV-R--GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC-C--CHHHHHH
Confidence 3456678999999999999988863 2346889999999999999999985543 1 1222222 2 7799999
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHh-----CCCcEEEEE
Q 043094 223 EIADKLGLTFREESGSGRARSLFSRLK-----KEKRILVIL 258 (261)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~l~~~l~-----~~kr~LlVl 258 (261)
.|+.+||.+.. ....+....|.+.|. +|++-+||+
T Consensus 328 ~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 328 SVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999997432 222344555544443 266777765
No 12
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.86 E-value=1.7e-08 Score=88.61 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCch---HHHH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS--PDIRKIQGEIADKLGLTFREESGS---GRAR---- 242 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~---~~~~---- 242 (261)
.-..++|+|++|+|||||++.+++....+ ||+.++||.+++. .++.++++.+...+-....+.+.. ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45688999999999999999999988754 8999999999866 789999999954432221111111 1111
Q ss_pred HHHHHHhCCCcEEEEEeCC
Q 043094 243 SLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 243 ~l~~~l~~~kr~LlVlDdv 261 (261)
........|++.+|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 1222223589999999985
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.79 E-value=2.8e-08 Score=78.93 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=34.4
Q ss_pred CccccHHHHHHHHHHhc---CCCceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 153 DFESRISTLNDILGALR---NPDISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
.|+||+++++.+...+. +...+.+.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 5567899999999999999999999888754
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.74 E-value=1.3e-08 Score=83.68 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 154 FESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|+||+++++.|.+++..+....+.|+|+.|+|||+|++.+.+..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 689999999999988876678999999999999999999998774
No 15
>PF05729 NACHT: NACHT domain
Probab=98.68 E-value=8.8e-08 Score=74.54 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=51.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKL----FDLVVFSEMSQSPDIR---KIQGEIADKLGLTFREESGSGRARSLFS 246 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 246 (261)
+++.|+|.+|+||||+++.++........ +...+|.+........ .+...|..+....... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999988765443 3456777665543322 3444444443322111 1112333
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.+...++++||||++
T Consensus 76 ~~~~~~~~llilDgl 90 (166)
T PF05729_consen 76 LLEKNKRVLLILDGL 90 (166)
T ss_pred HHHcCCceEEEEech
Confidence 444568999999975
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.67 E-value=3.2e-07 Score=69.36 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 043094 156 SRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD 216 (261)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 216 (261)
|++..+..+...+.......+.|+|++|+|||+|++.+++..... -..++++..+....
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~ 60 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLE 60 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhh
Confidence 677788888888876667889999999999999999999887521 12356666555443
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=4.5e-07 Score=86.13 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=76.3
Q ss_pred cCCccccHHHHHHHHHHhc----CCCc-eEEEEEccCCCcHHHHHHHHHHHhcc---CCCCC--EEEEEEeCCCCCHHHH
Q 043094 151 YEDFESRISTLNDILGALR----NPDI-SMLGICGMGGIGKTMLAKEVARKAKN---NKLFD--LVVFSEMSQSPDIRKI 220 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~i 220 (261)
|..+.||+.+++.|...|. +... .++-|+|++|+|||++++.|.+.... +...+ .+++|++..-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4567899999999988776 2333 56779999999999999999876542 11222 2577888777788999
Q ss_pred HHHHHHHhCCCCCC--CCchHHHHHHHHHHh-C-CCcEEEEEeCC
Q 043094 221 QGEIADKLGLTFRE--ESGSGRARSLFSRLK-K-EKRILVILDNI 261 (261)
Q Consensus 221 ~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~-~kr~LlVlDdv 261 (261)
+..|..++....+. .+.......+...+. . +...+||||||
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEI 878 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEI 878 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence 99999988543322 222344555555542 1 22458999986
No 18
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.51 E-value=4.2e-07 Score=81.14 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=57.7
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
..++++.+...+.+...|.. .+.+.++|++|+|||++|+.+++......+|+.+.||++++.++..+++.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 34567778888888888874 35678899999999999999999886556788899999999998777764
No 19
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.50 E-value=3.4e-07 Score=78.61 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=51.3
Q ss_pred CCCcCCccccHHHH---HHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 148 NKGYEDFESRISTL---NDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 148 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
|....+++|.++-+ ..|..++....+..+.+||++|+||||||+.+.+..+... ..||.+|-...-..-.+.|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 34445566655433 2234444566788899999999999999999998887543 5678887765544445555
Q ss_pred HHH
Q 043094 225 ADK 227 (261)
Q Consensus 225 ~~~ 227 (261)
+++
T Consensus 210 fe~ 212 (554)
T KOG2028|consen 210 FEQ 212 (554)
T ss_pred HHH
Confidence 544
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.49 E-value=6.3e-07 Score=77.89 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=40.4
Q ss_pred cCCCCcCCccccHHHH---HHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTL---NDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.++-+ .-|..++..+.+....+||++|+||||||+.+.....
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 3455666777776544 3355566677888889999999999999999998665
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=4.3e-07 Score=81.63 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=42.7
Q ss_pred CCCCcCCccccHHHHHH---HHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLND---ILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|+++.+.. |..++.......+.++|++|+||||||+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44556778998887655 77777777777889999999999999999998765
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=3.2e-06 Score=83.30 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=69.5
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHH
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEI 224 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i 224 (261)
.+|..+..++.|..-.+.|-. ....+++.|+|++|.||||++....+. ++.++|+++.. +.++..++..+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 344555677787764444432 345789999999999999999998742 23689999964 45667777777
Q ss_pred HHHhCCCCCC--------------CCchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 225 ADKLGLTFRE--------------ESGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 225 ~~~l~~~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
+..++..... .+.......+...+.. +.+++|||||+
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~ 130 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDY 130 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 7777421110 0111233444455543 57899999996
No 23
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.30 E-value=1.2e-05 Score=68.10 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=70.2
Q ss_pred HHHHHHHhc---CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCC----EEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 043094 161 LNDILGALR---NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFD----LVVFSEMSQSPDIRKIQGEIADKLGLTFR 233 (261)
Q Consensus 161 ~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 233 (261)
++.|-+++. ......+.|||.+|.|||++++......-....-+ .++.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 444444444 33456799999999999999999997654322111 36777888999999999999999998876
Q ss_pred CCCc-hHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 234 EESG-SGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 234 ~~~~-~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.... ..........|..-+--+||+|++
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 5433 333444455555444567788875
No 24
>PRK08118 topology modulation protein; Reviewed
Probab=98.29 E-value=4.6e-07 Score=71.20 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=29.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccC-CCCCEEEE
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNN-KLFDLVVF 208 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~w 208 (261)
..|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999988754 46777774
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.26 E-value=7.2e-06 Score=71.55 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=44.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|++..++.|.+++..+..+.+.++|++|+||||+|+.+.+...
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455677899999999999988877666788999999999999999988765
No 26
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.24 E-value=1.7e-05 Score=69.49 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE-EEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCch
Q 043094 162 NDILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL-VVFSEMSQ-SPDIRKIQGEIADKLGLTFREESGS 238 (261)
Q Consensus 162 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~ 238 (261)
.++++.+.. ..-..+.|+|.+|+|||||++.+.+..... +-+. ++|+.+.+ ..++.++++.+...+..+..+.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346776662 344677999999999999999999877532 3344 47777766 4567889999888776543222211
Q ss_pred H------HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 239 G------RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 239 ~------~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
. ....+.+++. .+++.+||+|++
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1 1222333332 589999999985
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.24 E-value=4.7e-06 Score=67.69 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=38.0
Q ss_pred cCCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 146 MSNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..|....+|+|.++-++.+.-++. ++.+.-+.+||++|+||||||+.+.+....
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC
Confidence 456678899999887777544332 345778899999999999999999988874
No 28
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.23 E-value=7.8e-06 Score=79.60 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++||+.+++.+++.|.......+.++|++|+|||++|+.++....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999866566678999999999999999988764
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.23 E-value=1.1e-05 Score=70.04 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=44.1
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.++.++.|..++..++.+-+.++|++|+||||+|+.+++...
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556678899988888888887777766788999999999999999998764
No 30
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.23 E-value=8.1e-06 Score=78.57 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=43.0
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++||+++++.+++.|......-+.++|++|+|||++|+.+++...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999988866666778999999999999999998763
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=98.22 E-value=6e-06 Score=75.73 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=49.6
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcC----CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCH
Q 043094 146 MSNKGYEDFESRISTLNDILGALRN----PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDI 217 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 217 (261)
..|....+++|.+...+.|.+|+.. ...+.+.|+|++|+||||+|+.+++... |+. +-++.|...+.
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~ 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTA 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccH
Confidence 3455667899999999999888762 2367899999999999999999998764 332 33455554433
No 32
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=7.9e-06 Score=61.01 Aligned_cols=85 Identities=27% Similarity=0.202 Sum_probs=45.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKEKR 253 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 253 (261)
..+.|+|++|+||||+++.+........ ...+++..+........... ...................+.+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998776432 23455554443322222111 11111111112222334445555543233
Q ss_pred EEEEEeCC
Q 043094 254 ILVILDNI 261 (261)
Q Consensus 254 ~LlVlDdv 261 (261)
.+|++|++
T Consensus 80 ~viiiDei 87 (148)
T smart00382 80 DVLILDEI 87 (148)
T ss_pred CEEEEECC
Confidence 88888875
No 33
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.19 E-value=2.1e-05 Score=68.17 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=75.3
Q ss_pred CCccccHHHHHHHHHHhcCCC---ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043094 152 EDFESRISTLNDILGALRNPD---ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKL 228 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 228 (261)
+.+.+|+.+...+..++.+.. +..+-|+|-.|+|||.+.+.+++.... ..+|+++-..++...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 467789999999998887433 345588999999999999999988843 248999999999999999999998
Q ss_pred C-CCCCCCCc---hHHHHHHHHHHh-------CCCcEEEEEeCC
Q 043094 229 G-LTFREESG---SGRARSLFSRLK-------KEKRILVILDNI 261 (261)
Q Consensus 229 ~-~~~~~~~~---~~~~~~l~~~l~-------~~kr~LlVlDdv 261 (261)
+ .+.++... .+........+. .++.++||||++
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 6 32222111 122222222222 245899999974
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.19 E-value=2e-05 Score=68.15 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=44.9
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+...
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455667899999999999998877667789999999999999999998764
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.14 E-value=1.8e-05 Score=68.21 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=40.4
Q ss_pred cCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|+|+++.++.|..++. ......+.++|++|+|||+||+.+.+...
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999888776 34456788999999999999999998775
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.12 E-value=2.8e-05 Score=67.81 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=42.6
Q ss_pred CCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+|+|+++.++.+..++. +.....+.++|++|+||||||+.+++...
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 34566789999999888876664 34456788999999999999999998876
No 37
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.10 E-value=6.8e-06 Score=61.32 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999875
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.09 E-value=1.2e-05 Score=66.10 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 157 RISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
....++.+..++.......+.|+|++|+|||+||+.+++..... ....++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence 45567777777666667889999999999999999999876532 33445665543
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.08 E-value=1.1e-05 Score=76.90 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=41.5
Q ss_pred CCCCcCCccccHHHHH---HHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLN---DILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..+. .|...+.......+.++|++|+||||||+.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556677899888764 466666677777889999999999999999998764
No 40
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=6.3e-05 Score=66.81 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCcCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 149 KGYEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
..+..+.||+.++..+.+|+. ....+-+=|.|-+|.|||.+...++.+......=.+++++++..=.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 456778999999999988876 3456788899999999999999999887632222345777666555677788888
Q ss_pred HHHhCC-CCCCCCchHHHHHHHHHHhCCC-cEEEEEeCC
Q 043094 225 ADKLGL-TFREESGSGRARSLFSRLKKEK-RILVILDNI 261 (261)
Q Consensus 225 ~~~l~~-~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv 261 (261)
+..+-. ...+....+....+..+..+.+ .||+|||++
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEm 265 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEM 265 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechh
Confidence 777621 1111122445566666776434 789999974
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.05 E-value=2.6e-05 Score=71.39 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=36.7
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.+..++.+.+.+. . ...+-+.++|++|+|||++|+.+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 3456678888877766543 1 2345689999999999999999999875
No 42
>PF13173 AAA_14: AAA domain
Probab=98.05 E-value=1.4e-05 Score=59.94 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP 215 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 215 (261)
.+++.|.|+.|+|||||++.++.+.. .....+|++.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 46899999999999999999998765 23346677665543
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=4.1e-05 Score=69.77 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=43.1
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.++....|...+..+.. ..+.++|++|+||||+|+.+.+...
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455677899998888888887776665 5688999999999999999988654
No 44
>PRK07261 topology modulation protein; Provisional
Probab=98.04 E-value=3.1e-05 Score=61.06 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=34.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccC-CCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNN-KLFDLVVFSEMSQSPDIRKIQGEIADKL 228 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l 228 (261)
.|.|+|++|+||||||+.+....... -+.|...|-.-....+..++...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 58999999999999999998765432 2456566643333334444444443333
No 45
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.02 E-value=4e-05 Score=63.36 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=29.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
.-.++|+|..|+|||||+..+..+.. ..|+++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 34688999999999999999997765 56877766643
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=3.2e-05 Score=74.38 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCce-EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDIS-MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..++.|.+++..+++. .+.++|++|+||||+|+.+++...
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34556778999999999999988876654 558999999999999999998764
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=6.8e-05 Score=66.34 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.+.+.+..++. ..+.++|++|+||||+|+.+.+...
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 445567889999999999888876554 5678999999999999999998764
No 48
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.01 E-value=0.00012 Score=69.39 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=77.6
Q ss_pred CcccccCCCCcCCccccHHHHHHHHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHH
Q 043094 141 EDTLLMSNKGYEDFESRISTLNDILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIR 218 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~gr~~~~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~ 218 (261)
.++..+.|..+.+.+-|.. |++.|. ..+.+.+.|..|+|.|||||+......... =..+.|.+++. +.++.
T Consensus 8 ~~sk~~~P~~~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~ 80 (894)
T COG2909 8 IPSKLVRPVRPDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPA 80 (894)
T ss_pred CccccCCCCCcccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHH
Confidence 3444456666777777765 555555 447899999999999999999999873321 23589999876 46688
Q ss_pred HHHHHHHHHhCCCCCCC--------------CchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 219 KIQGEIADKLGLTFREE--------------SGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 219 ~i~~~i~~~l~~~~~~~--------------~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
.++..++..++.-.+.. +.......+...|.+ .+++.+||||-
T Consensus 81 rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDy 138 (894)
T COG2909 81 RFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDY 138 (894)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 89999988886332211 122244555555542 46889999993
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.00 E-value=4.7e-05 Score=74.24 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=43.3
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++||++++..+++.|.......+.++|++|+||||+|+.+.....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999988866666778999999999999999998764
No 50
>PHA00729 NTP-binding motif containing protein
Probab=98.00 E-value=4.6e-05 Score=62.30 Aligned_cols=35 Identities=37% Similarity=0.411 Sum_probs=28.4
Q ss_pred HHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 163 DILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++.+.+.+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455556667789999999999999999999875
No 51
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=6.7e-05 Score=69.34 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=43.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455677899999999999998886554 5578999999999999999997553
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=5.9e-05 Score=69.46 Aligned_cols=53 Identities=15% Similarity=0.289 Sum_probs=44.3
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..++.|.+++..+.+ ..+.++|++|+||||+|+.+.....
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456677899999999999999986655 4578999999999999999998654
No 53
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=5.4e-05 Score=73.96 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=42.9
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++||+.++..+++.|....-..+.++|++|+|||+||+.+....-
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999988866666778999999999999999998763
No 54
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00071 Score=63.25 Aligned_cols=48 Identities=29% Similarity=0.329 Sum_probs=40.3
Q ss_pred cCCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+..|.++-.+++++++. +.+-+++..+|++|+|||++|+.|+....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn 463 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN 463 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence 4566788888899988875 34568999999999999999999998776
No 55
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.90 E-value=8.1e-05 Score=64.49 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=43.7
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+...+.+..++..+.. ..+.++|++|+||||+|+.+++...
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3456677899999999999999886554 5667799999999999999998753
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=4.7e-05 Score=68.90 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=44.6
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..+..|..++..++. ..+.++|++|+||||+|+.+++...
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3556677899999999999998887765 4689999999999999999997654
No 57
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.90 E-value=8.1e-05 Score=72.86 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++||++++..+++.|.......+.++|++|+|||++|+.+.....
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 34567999999999999988866666677999999999999999988763
No 58
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.90 E-value=7.5e-05 Score=60.68 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=52.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh-C---CC---CCCCCch---HHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKL-G---LT---FREESGS---GRAR 242 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~---~~---~~~~~~~---~~~~ 242 (261)
-.++.|+|++|+|||+++..+...... .-..++|++... +++..+.+. +.+. . .. ....+.. ....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 479999999999999999998876642 245789998876 676665543 2221 0 00 0011111 2244
Q ss_pred HHHHHHhCCCcEEEEEeCC
Q 043094 243 SLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 243 ~l~~~l~~~kr~LlVlDdv 261 (261)
.+.+.+..++.-+||+|-+
T Consensus 88 ~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHhhcCccEEEEeCc
Confidence 4555555445668899964
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.89 E-value=4.6e-05 Score=64.30 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....+.++|++|+||||+|+.+++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998765
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.88 E-value=5.6e-05 Score=66.93 Aligned_cols=48 Identities=31% Similarity=0.414 Sum_probs=38.1
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.+.+++.|.+.+. . ...+-+.++|++|+|||+||+.+++...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567899998888877653 1 1245689999999999999999998765
No 61
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.88 E-value=0.0029 Score=54.62 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHhcC----CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043094 156 SRISTLNDILGALRN----PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLT 231 (261)
Q Consensus 156 gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 231 (261)
++........+++.. ....-+-++|..|+|||.||..+++..-. ..+. +.++++ ..++..+-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 444444444555541 23467899999999999999999998863 2333 345544 35555555444211
Q ss_pred CCCCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 232 FREESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 232 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
......+.+. +-=||||||+
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDi 226 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDI 226 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecC
Confidence 1233444453 4567778885
No 62
>PRK12377 putative replication protein; Provisional
Probab=97.87 E-value=0.00013 Score=60.83 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=44.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKE 251 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 251 (261)
....+.++|.+|+|||+||..+.+....+ .-.++++++ .+++..|-...... .....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG-------QSGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc-------chHHHHHHHhc--
Confidence 34678999999999999999999988643 223455544 34555544332110 01223444453
Q ss_pred CcEEEEEeCC
Q 043094 252 KRILVILDNI 261 (261)
Q Consensus 252 kr~LlVlDdv 261 (261)
+-=||||||+
T Consensus 163 ~~dLLiIDDl 172 (248)
T PRK12377 163 KVDLLVLDEI 172 (248)
T ss_pred CCCEEEEcCC
Confidence 4567778875
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=97.87 E-value=8.3e-05 Score=61.48 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=29.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMS 212 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 212 (261)
..+.+.++|++|+|||+|++.+++....+ .....|++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34568999999999999999999987532 2234677664
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00011 Score=67.45 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=43.6
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+...+.|..++..... ..+.++|++|+||||+|+.+++...
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455667889999988888888886654 5669999999999999999998765
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00011 Score=69.72 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=43.4
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455677899999999999999886654 5668999999999999998887654
No 66
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.85 E-value=7.2e-05 Score=66.79 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=38.1
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|++.++++|.+.+. . ...+-|.++|++|+|||++|+.+++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4567799998888877653 1 2356789999999999999999998765
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00011 Score=68.59 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455677899999999999999886665 5678999999999999999987664
No 68
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.84 E-value=8e-05 Score=71.51 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=40.3
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+++||+.++..+++.|.......+.++|++|+|||++|+.+++..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999998886555566789999999999999999765
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00016 Score=67.61 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=43.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+...+.|.+++..++ ...+.++|++|+||||+|+.+.+...
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567789999999999999988665 46779999999999999999987653
No 70
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.82 E-value=9.9e-05 Score=61.07 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=55.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKL----FDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------ESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 237 (261)
.-.++.|+|.+|+|||+|+.+++-....... ...++|++....++..++.+ +++..+..... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3478999999999999999999755332221 25689999888877665543 33443322110 111
Q ss_pred h---HHHHHHHHHHhCC-CcEEEEEeCC
Q 043094 238 S---GRARSLFSRLKKE-KRILVILDNI 261 (261)
Q Consensus 238 ~---~~~~~l~~~l~~~-kr~LlVlDdv 261 (261)
. .....+...+.+. +.-|||+|-+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1 2234455555545 7889999964
No 71
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0002 Score=66.36 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=42.9
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..++. ..+.++|++|+||||+|+.+.....
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445567889999999999998886665 4568999999999999999987653
No 72
>PRK08116 hypothetical protein; Validated
Probab=97.80 E-value=0.00014 Score=61.49 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=44.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKEKR 253 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 253 (261)
..+.++|.+|+|||.||..+++....+ -..+++++ ..+++..+........ ......+.+.+.+ -.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~-~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN-AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC-CC
Confidence 358899999999999999999988643 22345554 4455555554432211 1112234454542 23
Q ss_pred EEEEEeCC
Q 043094 254 ILVILDNI 261 (261)
Q Consensus 254 ~LlVlDdv 261 (261)
||||||+
T Consensus 181 -lLviDDl 187 (268)
T PRK08116 181 -LLILDDL 187 (268)
T ss_pred -EEEEecc
Confidence 7778885
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.1e-05 Score=58.07 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00015 Score=67.90 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=43.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455677899999989999998886655 5679999999999999999976543
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.78 E-value=0.00017 Score=59.81 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 160 TLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 160 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.+..+..+........+.|+|++|+|||+|++.+++..... -..+.|+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~ 83 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHH
Confidence 44555555444555688999999999999999999876532 22456666644
No 76
>PRK08727 hypothetical protein; Validated
Probab=97.78 E-value=0.00014 Score=60.26 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=38.1
Q ss_pred cCCcccc-HHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 151 YEDFESR-ISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 151 ~~~~~gr-~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.++|++. ...+..+.....+.....+.|+|.+|+|||+|++.+++....+ .....|+++.+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~ 79 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence 3445433 3334444443334444569999999999999999999876533 22445666533
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00019 Score=64.27 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+...+.|..++.++.. ..+.++|++|+||||+|+.+.+...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 455667889999888889888886655 4588999999999999999987664
No 78
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.78 E-value=8.3e-05 Score=60.55 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
.|....+++|-++.++.|.-...+++.+-+.|.||||+||||-+..+++..--..+-+.+.-.+.|....++-+-..|
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 444567889999999888877779999999999999999999888888766533344566667777776655444443
No 79
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.77 E-value=0.00015 Score=59.82 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCCcCCccccHHHHHHHHH----HhcCCCceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 147 SNKGYEDFESRISTLNDILG----ALRNPDISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
.+.....++|.+.+.+.|++ ++.+....-+.+||..|+|||+|++.+.+....+
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34456778999888877754 4446677888999999999999999999887654
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0002 Score=66.58 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=43.8
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|++..++.|.+++..+. .+.+.++|++|+||||+|+.+.+...
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667789999999999999887544 45788999999999999999987654
No 81
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=66.47 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHhc---C---------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 152 EDFESRISTLNDILGALR---N---------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++=|.+..+.+|.+++. . ...+=+.++|++|+|||.||+.+.+...+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 345577877777766554 1 23566789999999999999999988875
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00033 Score=64.34 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=43.3
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..+..|...+..++ ..-+.++|++|+||||+|+.+++...
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567788999999998888766554 46889999999999999999998664
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00032 Score=62.17 Aligned_cols=52 Identities=31% Similarity=0.513 Sum_probs=43.5
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+...+.+.+++..+.. +.+.++|++|+||||+|+.+.+...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445667889999999999999886554 5888999999999999999987654
No 84
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=4.3e-05 Score=71.70 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=43.2
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCC-----CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNP-----DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.++.++.+..|+.+. ...++.|+|++|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45666788999999999999888732 235699999999999999999997654
No 85
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.0003 Score=59.07 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=47.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKE 251 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 251 (261)
...-+.++|.+|+|||.||.++.+..- +..+.+ .++ +..+++.++...... ......|...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv-~f~------~~~el~~~Lk~~~~~-------~~~~~~l~~~l~-- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISV-LFI------TAPDLLSKLKAAFDE-------GRLEEKLLRELK-- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeE-EEE------EHHHHHHHHHHHHhc-------CchHHHHHHHhh--
Confidence 667899999999999999999999987 433433 444 445666666555432 111234444443
Q ss_pred CcEEEEEeCC
Q 043094 252 KRILVILDNI 261 (261)
Q Consensus 252 kr~LlVlDdv 261 (261)
+-=||||||+
T Consensus 167 ~~dlLIiDDl 176 (254)
T COG1484 167 KVDLLIIDDI 176 (254)
T ss_pred cCCEEEEecc
Confidence 3457777875
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00033 Score=66.05 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=43.7
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..|....+++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+....
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455677899999999999999886664 578999999999999999998754
No 87
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.73 E-value=6.1e-05 Score=65.71 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=40.6
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 153 DFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
+++|.++.++++++++. +...+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999886 224578999999999999999999987753
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00037 Score=63.66 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=42.2
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHH
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..|....+++|.+...+.|.+.+..+.. .-+.++|+.|+||||+|+.+...
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 3456677899999988888888776655 47899999999999999999864
No 89
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.70 E-value=0.00032 Score=56.52 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=37.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT 231 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~ 231 (261)
+++|.++|+.|+||||.+-+++.....+ -..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4789999999999999888777766643 22355566532 223445566667777654
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=97.69 E-value=0.00037 Score=59.60 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.++|++|+||||+|+.+++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999988654
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00035 Score=65.80 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=43.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 455677899999999999988886665 4568999999999999999987654
No 92
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.66 E-value=0.0011 Score=50.66 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=75.0
Q ss_pred hhHHHH-HHHHHHhhhHhhHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q 043094 2 VEIIVS-VVIQVAKCLAPSIERQFSYVRDYTSNFENLKTQVEKLEGEIMSMEHAVNDAERKCEEIEQNVQNWLASANKAI 80 (261)
Q Consensus 2 ae~~v~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~~ 80 (261)
||.+++ +++.+++.+...+........ ..+.-++.|...++.|...+++.+....+.+..-+.-++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~-------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL-------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 344544 334444444444444443333 346667777777777778888777766556665577789999999
Q ss_pred HHHHhhhchhhhhccccccccCCcchhhchhHHHHHHHHHHHHHhhh
Q 043094 81 VEAKKFVGDEATENKHSFKGFCPNLKMRRRLRKEAVRQLDAIVKLRE 127 (261)
Q Consensus 81 ~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~l~~i~~ 127 (261)
.++++++.+|..-+ ++|++..++.+++|+++.+.+.....
T Consensus 76 ~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 76 EKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 99999998774322 35566778889999998888876543
No 93
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.66 E-value=8e-05 Score=70.22 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCC
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLF 203 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F 203 (261)
|....+++|++..+..+...+.......+.|+|++|+||||||+.+++..+....+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~ 205 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCC
Confidence 44556788999998888887776666789999999999999999999877543333
No 94
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.66 E-value=0.00059 Score=57.57 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=57.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
+-+.++|+|.+|+|||||++.+++....+ +-+.++++-+.+... +.++.+.+...=... ....+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678999999999999999999988742 235677777776544 466666665431111 11111111
Q ss_pred --HHHHHHHHHh-C-CCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-K-EKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~-~kr~LlVlDdv 261 (261)
..-.+.+++. + ++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223455664 3 79999999985
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00044 Score=59.91 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc----cCCCCCEEEEEE-eCCCCCHHHHHHHHH
Q 043094 152 EDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK----NNKLFDLVVFSE-MSQSPDIRKIQGEIA 225 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~i~~~i~ 225 (261)
.+++|.+...+.+.+++..+.. ....++|+.|+||||+|+.++.... ...|+|...|.. -+...+.+++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4678888888999998876554 6778999999999999999998642 235778777765 3445565554 3455
Q ss_pred HHh
Q 043094 226 DKL 228 (261)
Q Consensus 226 ~~l 228 (261)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 544
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.64 E-value=0.00044 Score=58.99 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=47.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC-CCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN-KLFDLVVFSEMSQS-PDIRKIQGEIADKLGLTFREESGSGRARSLFSRLK 249 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 249 (261)
..+++.++|++|+||||++..+......+ ..+ -+..|+.... .....-+..-.+.++.+..............+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 45799999999999999999998766532 123 3444554321 12233334444555554432222222334444443
Q ss_pred CCCcEEEEEeC
Q 043094 250 KEKRILVILDN 260 (261)
Q Consensus 250 ~~kr~LlVlDd 260 (261)
+. =+|++|.
T Consensus 272 -~~-d~vliDt 280 (282)
T TIGR03499 272 -DK-DLILIDT 280 (282)
T ss_pred -CC-CEEEEeC
Confidence 33 4666674
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.64 E-value=0.00083 Score=59.06 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.....
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445567889999999999998886554 5678999999999999999987653
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.64 E-value=8.9e-05 Score=62.01 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 147 SNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
.|....+|+|.++-.+.|-=++. +..+.-+.++|++|.||||||..+.+...++
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 34566789998887777654443 5567789999999999999999999988753
No 99
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.00028 Score=63.02 Aligned_cols=48 Identities=31% Similarity=0.315 Sum_probs=35.9
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.+...+.|.+.+. . ...+-+.++|++|+|||+||+.+++...
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456787777776665442 1 2356789999999999999999998765
No 100
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.00031 Score=60.73 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=52.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLF 245 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~ 245 (261)
.-+++-|+|++|+||||||.++...... .-..++|+...+.+++. .+++++.+.. +.+..+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3478999999999999999988766542 23457888877766653 3455554321 112233333443
Q ss_pred HHHhCCCcEEEEEeCC
Q 043094 246 SRLKKEKRILVILDNI 261 (261)
Q Consensus 246 ~~l~~~kr~LlVlDdv 261 (261)
..+..+.--+||+|-|
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 4444456678889964
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.63 E-value=0.00053 Score=58.59 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
-+.++|++|+||||+|+.++....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999988877654
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.00023 Score=64.49 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=33.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCC-EEEEEEeCCCCCHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFD-LVVFSEMSQSPDIRKIQGEIADKL 228 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 228 (261)
...+.|+|.+|+|||+|++.+++.... .+.+ .+.|++. .+++..+...+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHH
Confidence 456899999999999999999998753 2233 3456643 34455554443
No 103
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.61 E-value=0.00065 Score=52.20 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD 216 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 216 (261)
++.|+|++|+||||++..+...... .-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999887753 234567777765544
No 104
>PRK06696 uridine kinase; Validated
Probab=97.61 E-value=0.00011 Score=60.51 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 156 SRISTLNDILGALR---NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 156 gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|..-++.|.+.+. .+...+|+|.|.+|+||||||+.+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566677777664 45678999999999999999999998764
No 105
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.61 E-value=0.00023 Score=56.50 Aligned_cols=72 Identities=31% Similarity=0.427 Sum_probs=42.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKE 251 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 251 (261)
+..-+.++|.+|+|||.||..+.+..-.+ .+. +.|++ ..+++..+-.. ... .....+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~-v~f~~------~~~L~~~l~~~----~~~----~~~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYS-VLFIT------ASDLLDELKQS----RSD----GSYEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHCC----HCC----TTHCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Ccc-eeEee------cCceecccccc----ccc----cchhhhcCccc--
Confidence 34679999999999999999999876542 232 45553 45555554321 111 11234455565
Q ss_pred CcEEEEEeCC
Q 043094 252 KRILVILDNI 261 (261)
Q Consensus 252 kr~LlVlDdv 261 (261)
+-=||||||+
T Consensus 108 ~~dlLilDDl 117 (178)
T PF01695_consen 108 RVDLLILDDL 117 (178)
T ss_dssp TSSCEEEETC
T ss_pred cccEeccccc
Confidence 2457778986
No 106
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.61 E-value=0.00041 Score=60.02 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=56.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCC---C-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNK---L-FDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------ESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 237 (261)
.-.++-|+|++|+|||+|+..++-...... . =..++||+....|+++++.+ ++++++.+... .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 347889999999999999988764433211 1 13689999999999988764 56776654221 011
Q ss_pred hH---HHHHHHHHHhCCCcEEEEEeCC
Q 043094 238 SG---RARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 238 ~~---~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.. ....+...+..++--|||+|-+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 11 2233344444445668899964
No 107
>PRK08181 transposase; Validated
Probab=97.61 E-value=0.00026 Score=59.84 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 166 GALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 166 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
+|+. ....+.++|++|+|||.||..+.+..-.++ + .+.|++ ..+++..+.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~-~v~f~~------~~~L~~~l~ 150 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIENG-W-RVLFTR------TTDLVQKLQ 150 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHcC-C-ceeeee------HHHHHHHHH
Confidence 4554 335689999999999999999998764322 2 234443 345555553
No 108
>PRK09354 recA recombinase A; Provisional
Probab=97.58 E-value=0.00044 Score=60.33 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=53.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 246 (261)
-+++-|+|++|+||||||.++.-.... .-..++|+.....+++. .+++++.+.. +.+..+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468899999999999999998876652 23567899888877763 3455554321 1122333344444
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.+..+.--|||+|-|
T Consensus 133 li~s~~~~lIVIDSv 147 (349)
T PRK09354 133 LVRSGAVDLIVVDSV 147 (349)
T ss_pred HhhcCCCCEEEEeCh
Confidence 444456778999964
No 109
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.58 E-value=0.00088 Score=55.01 Aligned_cols=49 Identities=24% Similarity=0.200 Sum_probs=36.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNK----LFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~ 221 (261)
-.++.|+|.+|+|||+|+..+.-...... .=..++|+.....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 47999999999999999999976653211 01457899888877766554
No 110
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.58 E-value=0.0004 Score=60.09 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=52.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 246 (261)
-+++-|+|++|+||||||.+++-.... .-..++|+.....+++. .+.+++.+.+ +.+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 468899999999999999998766542 23457899887777753 3444443321 1122333333433
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.+.++.--|||+|-|
T Consensus 128 li~s~~~~lIVIDSv 142 (325)
T cd00983 128 LVRSGAVDLIVVDSV 142 (325)
T ss_pred HHhccCCCEEEEcch
Confidence 444456778889964
No 111
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.0008 Score=56.07 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHHhcC--CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCch
Q 043094 161 LNDILGALRN--PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGS 238 (261)
Q Consensus 161 ~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 238 (261)
+..+.++..+ .....+.++|.+|+|||+||..+++....+. ..++++ +..+++..+-..... . .
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~i------t~~~l~~~l~~~~~~--~----~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLII------TVADIMSAMKDTFSN--S----E 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEE------EHHHHHHHHHHHHhh--c----c
Confidence 4444444432 2345789999999999999999999876432 234454 345555555443320 0 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCC
Q 043094 239 GRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 239 ~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.....+.+.+. +.=||||||+
T Consensus 151 ~~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 151 TSEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred ccHHHHHHHhc--cCCEEEEeCC
Confidence 11233445554 2346777885
No 112
>PRK06921 hypothetical protein; Provisional
Probab=97.56 E-value=0.00055 Score=57.87 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
....+.++|.+|+|||+||..+++....+.. ..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g-~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG-VPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC-ceEEEEEH
Confidence 4567899999999999999999987753212 23456653
No 113
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00066 Score=59.89 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=37.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTF 232 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 232 (261)
-.++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 47899999999999999999988754221122344554322 2234445555555665543
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.55 E-value=0.00039 Score=63.34 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+.|+|++|+|||+|++.+++....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999998763
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00089 Score=63.00 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=43.1
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..+.+ .-+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 455677899999989989888876555 5588999999999999999987664
No 116
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00034 Score=63.28 Aligned_cols=50 Identities=32% Similarity=0.465 Sum_probs=39.2
Q ss_pred cCCcccc---HHHHHHHHHHhcCC--------C-ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 151 YEDFESR---ISTLNDILGALRNP--------D-ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 151 ~~~~~gr---~~~~~~l~~~l~~~--------~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
..++.|- ..|+++++++|.++ + ++=|.++|++|.|||-||++|+-...+-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 4455664 45788899999853 2 4678899999999999999999877753
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.54 E-value=0.00034 Score=57.43 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+-|+|..|+|||.|.+.+++....
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999999998753
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.54 E-value=0.00032 Score=63.05 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+.|+|++|+|||+|++.+++....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 356889999999999999999998763
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00033 Score=65.81 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=42.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445667899999999999888876554 5678999999999999999987654
No 120
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00028 Score=59.18 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+.++|++|+|||+||..+.+..-
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345689999999999999999988764
No 121
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.53 E-value=0.00061 Score=59.56 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=56.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---CC-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---KL-FDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------ESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~-F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 237 (261)
.-.++-|+|.+|+|||+|+..++-..... .. -..++||+....|++.++.+ +++.++.+... .+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 34688899999999999999886443321 11 23579999999999988765 56666654211 111
Q ss_pred hH---HHHHHHHHHhCCCcEEEEEeCC
Q 043094 238 SG---RARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 238 ~~---~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.+ ....+...+...+--|||+|-+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 21 2223333443345668889964
No 122
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.00087 Score=59.81 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=38.1
Q ss_pred cCCccccHHHHHHHHHHhcCCC----------ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 151 YEDFESRISTLNDILGALRNPD----------ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+++|.+..++.|.+++..+. ..-+.++|++|+|||++|+.+....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467898888888888887542 4668899999999999999998754
No 123
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.52 E-value=0.00052 Score=56.43 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=35.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKI 220 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 220 (261)
.-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHH
Confidence 3479999999999999999999876642 23567899887 5665554
No 124
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0011 Score=62.04 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=44.0
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+.....
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455677899999999999999887665 4578999999999999999997654
No 125
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.52 E-value=0.0013 Score=54.39 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+++|.|++|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999987653
No 126
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.52 E-value=0.0015 Score=57.54 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCC----CceEEEEEccCCCcHHH-HHHHHHHHhccCCCCCEEEEEEeC
Q 043094 158 ISTLNDILGALRNP----DISMLGICGMGGIGKTM-LAKEVARKAKNNKLFDLVVFSEMS 212 (261)
Q Consensus 158 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTt-La~~v~~~~~~~~~F~~~~wv~vs 212 (261)
.+.+..+..|+.+. +-++|++||+.|+|||| ||+..+.-....++ .-+..|+..
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtD 242 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTD 242 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEec
Confidence 34455555555533 47899999999999976 77766654412122 234555543
No 127
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.51 E-value=0.00064 Score=57.19 Aligned_cols=88 Identities=25% Similarity=0.264 Sum_probs=55.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKL----FDLVVFSEMSQSPDIRKIQGEIADKLGLTFR----------EESGS 238 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 238 (261)
-.+.=|+|.+|+|||.|+-.++=+...... =..++|++....|+..++. +|++..+.+.. ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 468899999999999999988765542211 2358999999999988876 46665543211 01111
Q ss_pred H---HHHHHHHHHhCCCcEEEEEeCC
Q 043094 239 G---RARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 239 ~---~~~~l~~~l~~~kr~LlVlDdv 261 (261)
+ ....+...+.+.+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 1 2233344444456779999964
No 128
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00066 Score=58.63 Aligned_cols=48 Identities=29% Similarity=0.351 Sum_probs=36.2
Q ss_pred CCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 152 EDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++=|-++++++|.+... + ..++=|.++|++|+|||-||++|+|....
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A 211 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA 211 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc
Confidence 344467777777766543 1 34677889999999999999999988763
No 129
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0062 Score=57.20 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=40.4
Q ss_pred cCCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+..|-++..++|+++|. .-+-.++.+||+||+|||+|++.|++...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 3566788889999998876 23457999999999999999999998776
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.0004 Score=63.15 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=44.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKEK 252 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 252 (261)
...+.|+|.+|+|||+|++.+.+.......--.++++ +..++...+...++.. ......+.+.+. +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKT------HKEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh------hhHHHHHHHHhc--c
Confidence 3568899999999999999999865421111123444 3455666666555421 112333444443 2
Q ss_pred cEEEEEeCC
Q 043094 253 RILVILDNI 261 (261)
Q Consensus 253 r~LlVlDdv 261 (261)
.-+|||||+
T Consensus 207 ~dvLiIDDi 215 (450)
T PRK14087 207 NDVLIIDDV 215 (450)
T ss_pred CCEEEEecc
Confidence 346677775
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0012 Score=60.64 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=42.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|.+.....|.+++..... ..+.++|++|+||||+|+.+....
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445667889999999999999886554 456789999999999999998764
No 132
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.00069 Score=62.51 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=33.8
Q ss_pred CcCCccccHHHHHHH---HHHhcC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDI---LGALRN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l---~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.|.+...+.+ +.++.. ...+-+.++|++|+|||+||+.+++...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 345677776655444 333331 2234588999999999999999998765
No 133
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00053 Score=58.49 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
-++|.++||||.|||+|++..++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999987653
No 134
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.0005 Score=57.95 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+.|+|++|+|||+||..+.+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999987654
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.001 Score=62.48 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=44.3
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..++.|.+++..++. .-+.++|+.|+||||+|+.+.+...
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3556678899999999999998886654 5789999999999999999987653
No 136
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.48 E-value=0.00069 Score=59.26 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..+..+.|||++|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45678999999999999999999998874
No 137
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0013 Score=57.90 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=42.9
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.....++|.+.....|...+..+.. .-+.|+|+.|+||||+|+.+....-
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 44567789999999999998886654 5689999999999999999988764
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.45 E-value=0.0003 Score=63.43 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=36.1
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++-|.+.+++.|.+.+. . ....-+.++|++|+|||+||+.+++...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456788888777766543 1 2345678999999999999999998765
No 139
>CHL00176 ftsH cell division protein; Validated
Probab=97.45 E-value=0.00064 Score=64.26 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=34.2
Q ss_pred CcCCccccHHHH---HHHHHHhcCC---------CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTL---NDILGALRNP---------DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~---~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.|.++.. .++++++... ..+-+.++|++|+|||+||+.+++...
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345667765544 4444444422 245689999999999999999998764
No 140
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.44 E-value=0.0012 Score=57.16 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=42.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKL----FDLVVFSEMSQSPDIRKIQGEIADKLGL 230 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 230 (261)
.-.++-|+|.+|+|||+++.+++-....... =..++||.....|++.++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3578899999999999999999876542111 1268999999988888765 44555543
No 141
>PRK06547 hypothetical protein; Provisional
Probab=97.43 E-value=0.00026 Score=55.81 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 164 ILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 164 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+...+......+|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445567788999999999999999999988754
No 142
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.00051 Score=56.94 Aligned_cols=91 Identities=25% Similarity=0.367 Sum_probs=57.0
Q ss_pred cCCccccHHHHH---HHHHHhcC------CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 151 YEDFESRISTLN---DILGALRN------PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 151 ~~~~~gr~~~~~---~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
..+++|.++... -|+..|.+ ..++.|..+|++|.|||.+|+.+.+..++. | +.| +..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~v----kat~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLV----KATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEe----chHHHH
Confidence 456788766543 36677764 357899999999999999999999888752 2 111 122221
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 222 GEIADKLGLTFREESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
-+..| +....++.+.+.-...-+|++.||++
T Consensus 189 ---GehVG------dgar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 189 ---GEHVG------DGARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred ---HHHhh------hHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 11211 12334555555555456788888863
No 143
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00024 Score=54.57 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=35.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLT 231 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 231 (261)
+|.|.|++|+||||+|+.+.++..-+ + .+...++++|++..|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999887632 1 14467888888887765
No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00024 Score=54.56 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
...|.|.||+|+|||||++.+.+..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4578999999999999999999887754
No 145
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0012 Score=64.20 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=44.0
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|....+++|.+..++.|.+++...++ ..+.++|+.|+||||+|+.+.+...
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455667899999999999999886655 4678999999999999999987764
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.40 E-value=0.001 Score=65.23 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=36.0
Q ss_pred CCccccHHHHHHHHHHhc-------CC--CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR-------NP--DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+...+. ++ ...++.++|++|+|||+||+.+.+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 457788888877777654 11 235788999999999999999997653
No 147
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.40 E-value=0.0013 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|.+|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 148
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.40 E-value=0.0019 Score=58.40 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=39.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTF 232 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 232 (261)
.+.+|.++|.+|+||||++..++.....+ .+. +..|++.. .+...+-++.+..+++.+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~k-V~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLK-VGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCe-EEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 46899999999999999999999877643 232 23343322 2233555667777776553
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.39 E-value=0.0011 Score=63.98 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=34.5
Q ss_pred CCccccHHHHHHHHHHhc-------CC--CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 152 EDFESRISTLNDILGALR-------NP--DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++|.+..++.+.+.+. ++ ...++.++|++|+|||+||+.+++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 345677777777766654 11 23568899999999999999998766
No 150
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.021 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
...+.++|.+|+|||+||..+++..-.+. + .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g-~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG-K-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC-C-eEEEEEH
Confidence 37799999999999999999999876432 2 3455543
No 151
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.39 E-value=0.002 Score=53.58 Aligned_cols=49 Identities=8% Similarity=0.266 Sum_probs=34.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
.-.++.|.|.+|+|||++|.++....-. .-+.++|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH
Confidence 4578999999999999999886544321 134577887655 555565553
No 152
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.38 E-value=0.0007 Score=53.71 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|+|++|+||||+|+.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987654
No 153
>PTZ00035 Rad51 protein; Provisional
Probab=97.38 E-value=0.0016 Score=56.96 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=54.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---K-LFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------ESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 237 (261)
.-.++.|+|.+|+|||||+..++-..... . .=..++|+.....|++.++ .+++++++..... .+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 35788999999999999999887554411 1 1134679988888888774 4456665543210 111
Q ss_pred hHHH---HHHHHHHhCCCcEEEEEeCC
Q 043094 238 SGRA---RSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 238 ~~~~---~~l~~~l~~~kr~LlVlDdv 261 (261)
.+.. ..+...+..++--|||+|-+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 1222 22333343456678899964
No 154
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.37 E-value=0.0026 Score=50.74 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 163 DILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 163 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.+.+..++. ..+.++|+.|+||||+|+.+.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35555555555 6789999999999999999988764
No 155
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.37 E-value=0.0011 Score=57.40 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=54.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---K-LFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------ESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 237 (261)
...++.|+|.+|+|||||+..++...... . .-..++|++....+++.++ .++++.++..... .+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 35789999999999999999987643211 1 1135799998888888764 3455555543211 111
Q ss_pred hHH---HHHHHHHHhCCCcEEEEEeCC
Q 043094 238 SGR---ARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 238 ~~~---~~~l~~~l~~~kr~LlVlDdv 261 (261)
++. ...+...+...+--|||+|-+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECc
Confidence 122 222233333345678999964
No 156
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.37 E-value=0.0018 Score=58.37 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.++.++|++|+||||++..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999888887643
No 157
>PRK07667 uridine kinase; Provisional
Probab=97.36 E-value=0.00033 Score=56.32 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=29.0
Q ss_pred HHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 162 NDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 162 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.+.+.+. .+...+|+|.|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34557999999999999999999998664
No 158
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.35 E-value=0.0012 Score=57.67 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=43.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---K-LFDLVVFSEMSQSPDIRKIQGEIADKLGLT 231 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 231 (261)
.-.++-|+|.+|+|||+|+..++-..... . .-..++|++....|+++++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 35788899999999999999887544321 1 11268999999999988874 566766644
No 159
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.34 E-value=0.0021 Score=53.18 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLG 229 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 229 (261)
-.++.|.|.+|+||||||.++....-. .. ..+++++. ..++.++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~--e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVST--QLTTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeC--CCCHHHHHHHH-HHhC
Confidence 458999999999999997555443321 22 23455553 33556666665 3444
No 160
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.33 E-value=0.0013 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
++.++|++|+||||++..+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999877653
No 161
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.33 E-value=0.0018 Score=56.20 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=42.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCC----CEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLF----DLVVFSEMSQSPDIRKIQGEIADKLGL 230 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~ 230 (261)
.-.++-|+|++|+|||+++.+++-.......+ ..++||+....|++..+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 35788999999999999999998665322111 3689999999888877654 4455543
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0019 Score=60.57 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=43.3
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.++..+.|.+++..+++ ..+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 455677899999999999998886655 5678999999999999999987653
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.0014 Score=64.09 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=37.2
Q ss_pred CCccccHHHHHHHHHHhc---------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR---------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+.+.+. +....++.++|++|+|||.||+.+.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467898888888887764 12345789999999999999999987763
No 164
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0022 Score=60.06 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+.+...
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 45566788999888888888887655 47788999999999999999997664
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00022 Score=52.86 Aligned_cols=22 Identities=50% Similarity=0.842 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043094 176 LGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~ 197 (261)
|.|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 166
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0031 Score=57.39 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=43.3
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.+...
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445667899999999999998886655 6688999999999999999987653
No 167
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0027 Score=60.02 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=43.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.....++|.+.....|..++..+.. .-+.++|+.|+||||+|+.++....
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 445567889999999999988886543 6778999999999999999998764
No 168
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.30 E-value=0.0023 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988765543
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.0019 Score=63.36 Aligned_cols=47 Identities=30% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHhcC-------C--CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALRN-------P--DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+...+.. + ...++.++|++|+|||++|+.+.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4578888888888777651 1 245788999999999999999997654
No 170
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.30 E-value=0.00085 Score=50.71 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=32.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 176 LGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
|.++|++|+|||+||+.++..... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999987731 234568888888887764
No 171
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.00028 Score=57.37 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 172
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.30 E-value=0.00095 Score=62.52 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=42.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLG 229 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 229 (261)
.-++..++|++|+||||||+-|+++.. | -++-|+.|...++..+-..|...+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHh
Confidence 357889999999999999999998775 2 2567889999888887777766553
No 173
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.29 E-value=0.0015 Score=53.39 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=32.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD 216 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 216 (261)
.-.++.|+|.+|+||||++.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999998766421 23567887655554
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=97.29 E-value=0.002 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+|.++|++|+||||++..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999998888876554
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0027 Score=59.92 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=42.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|.+...+.|.+++..+.+ ..+.++|+.|+||||+|+.+....
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 445677899999999999999886655 558899999999999999988765
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.00096 Score=60.55 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+.|+|++|+|||+|++.+++....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999998753
No 177
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0018 Score=59.43 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|+|+|++|+||||++.++.....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988886543
No 178
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.00027 Score=55.87 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999997654
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0018 Score=61.79 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=61.0
Q ss_pred CCccccHHHHHHHHHHhc---------CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 152 EDFESRISTLNDILGALR---------NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
..++|.++.++.+.+.+. +....+...+|+.|+|||-||+.+....-... +..+-+ ++.+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~------DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRI------DMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceee------chHHHHH
Confidence 457888888888877765 23456788899999999999999987664211 222333 4444433
Q ss_pred HH-HHH-hCCCCCCCCchHHHHHHHHHHhCCCcE-EEEEeCC
Q 043094 223 EI-ADK-LGLTFREESGSGRARSLFSRLKKEKRI-LVILDNI 261 (261)
Q Consensus 223 ~i-~~~-l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv 261 (261)
.- ++. +|.++..-...+ ...|-+... .++| +|.||+|
T Consensus 563 kHsVSrLIGaPPGYVGyee-GG~LTEaVR-r~PySViLlDEI 602 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE-GGQLTEAVR-RKPYSVILLDEI 602 (786)
T ss_pred HHHHHHHhCCCCCCceecc-ccchhHhhh-cCCCeEEEechh
Confidence 22 233 343332222222 445666676 5777 5558875
No 180
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.27 E-value=0.00027 Score=56.80 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=23.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
+|+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999988864
No 181
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0017 Score=57.96 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 182
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.00028 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.706 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999985543
No 183
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0029 Score=59.04 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=43.9
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+...
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3455677899999999999999886554 4688999999999999999987654
No 184
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.25 E-value=0.00033 Score=56.94 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999997654
No 185
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.25 E-value=0.0021 Score=62.87 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=36.0
Q ss_pred CCccccHHHHHHHHHHhc-------CC--CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR-------NP--DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+...+. ++ ....+.++|++|+|||+||+.+.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457788888888877664 11 234678999999999999999987653
No 186
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.25 E-value=0.00053 Score=54.13 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=28.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEE
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFS 209 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv 209 (261)
...+|.++|++|+||||+|+.+++.... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 4568999999999999999999987763 34444444
No 187
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.24 E-value=0.00046 Score=63.60 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=41.5
Q ss_pred cCCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|.++.++.+++.|. +..-+++.++|++|+||||||+.+.+-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4468899999999999883 55668999999999999999999998665
No 188
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0014 Score=63.09 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHHHhc---------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 153 DFESRISTLNDILGALR---------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|.++.++.|.+.+. +.....+.++|++|+|||+||+.+.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46777777777777655 12245789999999999999999987763
No 189
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00062 Score=53.98 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988543
No 190
>PRK05642 DNA replication initiation factor; Validated
Probab=97.23 E-value=0.0015 Score=54.21 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=28.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMS 212 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 212 (261)
...+.|+|.+|+|||.|++.+++....+. ..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH
Confidence 36789999999999999999998765322 235677653
No 191
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0012 Score=61.72 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=45.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ--SPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKK 250 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 250 (261)
.+-|.|.|+.|+|||+||+.+++... +.+.-++.+|++|. .....++++.+.+- +.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~- 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW- 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh-
Confidence 46789999999999999999999887 34444456666654 22344444433222 222333
Q ss_pred CCcEEEEEeCC
Q 043094 251 EKRILVILDNI 261 (261)
Q Consensus 251 ~kr~LlVlDdv 261 (261)
..+-+||||||
T Consensus 493 ~~PSiIvLDdl 503 (952)
T KOG0735|consen 493 YAPSIIVLDDL 503 (952)
T ss_pred hCCcEEEEcch
Confidence 45677777775
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.23 E-value=0.0023 Score=62.25 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+++|.+...+.+.+++. ..+..++.++|++|+|||++|+.+.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788888888877654 22345799999999999999999998875
No 193
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.21 E-value=0.0013 Score=53.65 Aligned_cols=85 Identities=24% Similarity=0.438 Sum_probs=53.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhC-------CCCCCCCchH-----
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-PDIRKIQGEIADKLG-------LTFREESGSG----- 239 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~-------~~~~~~~~~~----- 239 (261)
-..++|+|.+|+|||+|+..+.++.. -+..+++.+.+. ..+.++.+++...=. ......+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 36789999999999999999998875 345588888765 445666666643310 1111111111
Q ss_pred -HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 -RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 -~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .++..|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 1112344443 489999999984
No 194
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00037 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998765
No 195
>PTZ00301 uridine kinase; Provisional
Probab=97.20 E-value=0.00038 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999988765
No 196
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0031 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.++|+++|++|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 197
>PRK04328 hypothetical protein; Provisional
Probab=97.20 E-value=0.0024 Score=53.53 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=30.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS 214 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 214 (261)
.-.++.|.|.+|+|||+|+.++....-. .-+.++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCC
Confidence 4578999999999999999987655321 1345788877663
No 198
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.19 E-value=0.0027 Score=49.92 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=48.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC-CcE
Q 043094 176 LGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKE-KRI 254 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~ 254 (261)
+.|.|.+|+|||++|.+..... ....+++..++.++. ++.+.|..............+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999987541 235677777777754 466665543332222222333344555555321 223
Q ss_pred EEEEeCC
Q 043094 255 LVILDNI 261 (261)
Q Consensus 255 LlVlDdv 261 (261)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 6778864
No 199
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.19 E-value=0.00039 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 200
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.18 E-value=0.003 Score=53.25 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc--CCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN--NKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~-- 239 (261)
.-+.++|+|-.|+|||+|+..+.++... +.+-+.++++-+.+.. ...++.+.+...=... ..+.+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999999877641 2235788999888764 4567777765532111 11111111
Q ss_pred ----HHHHHHHHHh-C-CCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-K-EKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~-~kr~LlVlDdv 261 (261)
....+.+++. + +++.|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1223566665 2 68999999995
No 201
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0031 Score=60.02 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=42.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|.+...+.|..++..++ ...+.++|++|+||||+|+.+....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45566788999999999999888655 4567899999999999999998754
No 202
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.18 E-value=0.0028 Score=54.75 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=50.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 246 (261)
-+++-|+|+.|+||||||-.+...... .-..++||...+.+++.. +.++|.+.+ +.+..+....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 469999999999999999999877653 245689999988877643 344554432 1222333444444
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.++.+.--++|+|-|
T Consensus 126 lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHTTSESEEEEE-C
T ss_pred HhhcccccEEEEecC
Confidence 455556668889965
No 203
>PRK03839 putative kinase; Provisional
Probab=97.17 E-value=0.00039 Score=55.14 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|+|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998765
No 204
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.17 E-value=0.0039 Score=51.63 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=34.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
.-.++.|+|.+|+|||+|+.++....-. .=..++|++...+ +..+.+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH
Confidence 3578999999999999999998544321 1235788888654 45555553
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.0012 Score=63.92 Aligned_cols=48 Identities=31% Similarity=0.353 Sum_probs=36.6
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.+..++.+.+++. . ...+-+.++|++|+|||+||+.+++...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 3456788888877766543 1 2345688999999999999999998764
No 206
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0052 Score=56.84 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=42.3
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCce-EEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDIS-MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|.+...+.|..++..+... .+.++|+.|+||||+|+.+.+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4556778999999889999888866654 66899999999999999888765
No 207
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.15 E-value=0.0028 Score=57.09 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=53.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.++.... .+..+++-+.+.. .+.++....+..-+... .+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457889999999999999999987654 2455566666544 34566655554322111 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .++..|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1223556663 589999999986
No 208
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00044 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 209
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0047 Score=57.78 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=43.3
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+...+.|.+++..+. ...+.++|+.|+||||+|+.+.....
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345667789999999999999988554 45678899999999999999987543
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.13 E-value=0.0024 Score=56.57 Aligned_cols=84 Identities=26% Similarity=0.329 Sum_probs=50.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREE--SGSGRARSLFSRLKK 250 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 250 (261)
-.++.|.|.+|+|||||+..++...... -..++|++... +...+. .-+..++...... ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999998766432 23566776543 333332 2245555433211 011123445555554
Q ss_pred CCcEEEEEeCC
Q 043094 251 EKRILVILDNI 261 (261)
Q Consensus 251 ~kr~LlVlDdv 261 (261)
.+.-+||+|.+
T Consensus 157 ~~~~lVVIDSI 167 (372)
T cd01121 157 LKPDLVIIDSI 167 (372)
T ss_pred cCCcEEEEcch
Confidence 46678889964
No 211
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.13 E-value=0.0031 Score=57.19 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=59.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
+-..++|+|.+|+|||||+..+....... +-+.++++-+.+.. .+.++...+...=... ..+.+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 45689999999999999999988877643 66888888887654 4566777665432111 11111111
Q ss_pred --HHHHHHHHHh-C-CCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-K-EKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~-~kr~LlVlDdv 261 (261)
.+..+.+++. . ++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 2234566664 2 79999999986
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0024 Score=57.57 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+++.++|++|+||||++..+.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999998888876553
No 213
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0021 Score=59.98 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=22.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.|+|..|+|||.|++.+++...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999875
No 214
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.12 E-value=0.0019 Score=58.00 Aligned_cols=86 Identities=17% Similarity=0.312 Sum_probs=53.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+..... .+..+++-+.+... +.++.+.++..-+... .+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999985432 35666676766544 4566666654422111 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.+..+.+++. .+++.||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1223555553 479999999986
No 215
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0036 Score=49.43 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+.|.|++|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999776
No 216
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.0011 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++.|+|++|.||||++........
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999998888765
No 217
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0057 Score=54.88 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887653
No 218
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0068 Score=51.37 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=40.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
.-+++=|+|+.|+||||+|-+++=.... .-..++|++.-+.+++..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHH
Confidence 3478899999999999999998876653 234789999999999887654
No 219
>PRK05439 pantothenate kinase; Provisional
Probab=97.09 E-value=0.0057 Score=52.71 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+...+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999987553
No 220
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.09 E-value=0.00099 Score=56.42 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=56.0
Q ss_pred cCCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEE-EEeCCCC
Q 043094 146 MSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVF-SEMSQSP 215 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~ 215 (261)
..|....++.|.+..+.-|.+.+..........+|++|.|||+-|........-.+-|.+++. .++|...
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 456677889999999999999888878899999999999999999998877665566777543 4555543
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.08 E-value=0.00099 Score=61.43 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=44.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcC-----CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEE
Q 043094 147 SNKGYEDFESRISTLNDILGALRN-----PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSE 210 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 210 (261)
.|....++.-..+-++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 344445555556667788888762 2357889999999999999999998764 66666764
No 222
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.002 Score=53.82 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=41.4
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEE
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVV 207 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~ 207 (261)
.+...+.++......++.++.+. ..+.+.|++|+|||+||..+..+.-..+.|+..+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 34455677888888888888753 4899999999999999999988532123354433
No 223
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.07 E-value=0.0036 Score=56.44 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=58.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|.|.+|+|||+|+..+..+... .+-+.++|+-+.+... ..++.+.+...=... ..+.+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4467899999999999999999877542 3457888888876554 566777665431111 11111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.+..+.+++. .+++.||++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 2234566765 379999999985
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=97.07 E-value=0.0049 Score=53.82 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=36.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDI--RKIQGEIADKLGLT 231 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~ 231 (261)
+..+|.++|++|+||||++..++...... .+. ++.+. ...+.. .+-++.....++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS-VVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe-EEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 46899999999999999888888766532 232 23333 233322 23445556666654
No 225
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.05 E-value=0.0016 Score=48.22 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.9
Q ss_pred CccccHHHHHHHH----HHhc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 153 DFESRISTLNDIL----GALR---NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 153 ~~~gr~~~~~~l~----~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+.|..-..+.++ +++. ..++-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3455444444444 4443 3467899999999999999999998874
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0026 Score=60.39 Aligned_cols=49 Identities=31% Similarity=0.384 Sum_probs=36.8
Q ss_pred cCCccccHH---HHHHHHHHhcCC---------CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 151 YEDFESRIS---TLNDILGALRNP---------DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 151 ~~~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++-|-++ |+.+++++|.++ -++=+.++|++|+|||-||++++-...+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC
Confidence 345666554 566667777743 2566789999999999999999987775
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.04 E-value=0.0013 Score=54.14 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=32.3
Q ss_pred cCCcc-ccH-HHHHHHHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFE-SRI-STLNDILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~-gr~-~~~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|+ |.. .....+.++.. ......+.|+|.+|+|||+||+.+++...
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444 433 33344444443 23456789999999999999999998763
No 228
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.04 E-value=0.0055 Score=55.92 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++++|+.|+||||++.+++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999997664
No 229
>PRK04040 adenylate kinase; Provisional
Probab=97.04 E-value=0.00065 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999987763
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0074 Score=52.17 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=51.0
Q ss_pred ccccHHHHHHHHHHhc-CCCceE-EEEEccCCCcHHHHHHHHHHHhccCC-------------------CCCEEEEEEeC
Q 043094 154 FESRISTLNDILGALR-NPDISM-LGICGMGGIGKTMLAKEVARKAKNNK-------------------LFDLVVFSEMS 212 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 212 (261)
+++.+.....+..+.. .++..- +.++|++|+||||+|..+.+...-.. ..+....++-|
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 334444 99999999999999999998765222 12344555555
Q ss_pred CCCC---HHHHHHHHHHHhCC
Q 043094 213 QSPD---IRKIQGEIADKLGL 230 (261)
Q Consensus 213 ~~~~---~~~i~~~i~~~l~~ 230 (261)
.... ..+..+++.+....
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred ccCCCcchHHHHHHHHHHhcc
Confidence 5555 45566666665543
No 231
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0072 Score=53.38 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=37.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-PDIRKIQGEIADKLGLT 231 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~ 231 (261)
..+++.++|+.|+||||++..+......+. ..+.+|+.... ....+-++...+.++.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 457999999999999999999987664322 23455555322 22334455555555544
No 232
>PRK00625 shikimate kinase; Provisional
Probab=97.01 E-value=0.00068 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987754
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.01 E-value=0.0033 Score=49.85 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=30.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGE 223 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 223 (261)
++.|.|++|+|||+|+..+....-.. . ..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-G-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-C-CcEEEEECCC--CHHHHHHH
Confidence 36789999999999999887654321 1 3466776644 45555444
No 234
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.99 E-value=0.00056 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 235
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.99 E-value=0.0018 Score=52.88 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=32.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc-----cCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK-----NNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
+..|+|++|+||||++..+..... ....-...+-++......++.++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999986666666551 1122344555666666677777777766
No 236
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.98 E-value=0.0017 Score=49.46 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=29.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
++|.|+|..|+|||||++.+.+.... +.+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 47999999999999999999998865 3455666666655
No 237
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.0052 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+-|.++|++|+|||.+|+.+.+...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 346789999999999999999998765
No 238
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00065 Score=57.62 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 162 NDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 162 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
..+++.+...+ +-+.++|++|+|||++++........ ..| ...-++.|...+...++
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH
Confidence 44555555443 56689999999999999998754332 111 23445666655555443
No 239
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.96 E-value=0.0077 Score=51.27 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 164 ILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 164 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++...+..++.|+|.+|+|||||...+.+...
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44455567899999999999999999999998765
No 240
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.96 E-value=0.0033 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..|.|+|.||+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987664
No 241
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.96 E-value=0.0066 Score=54.97 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=57.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|.+|+|||||+..+....... +-+.++++-+.+.. .+.++++.+...=... ..+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678999999999999999988776532 22567778776644 4567777776532111 11111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
..-.+.+++. .++++||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223566663 479999999985
No 242
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.96 E-value=0.0046 Score=59.41 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=54.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLF 245 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~ 245 (261)
.-+++-|+|++|+|||||+..++-..... =..++|+.....+++. .+++++.+.. ..+.+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788899999999999997766544321 2457899888877743 5667776532 112233344444
Q ss_pred HHHhCCCcEEEEEeCC
Q 043094 246 SRLKKEKRILVILDNI 261 (261)
Q Consensus 246 ~~l~~~kr~LlVlDdv 261 (261)
..+..++--|||+|-|
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 4455556778999964
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0065 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.++|+.|+||||.+..+.....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999998887654
No 244
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.96 E-value=0.00088 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...|.++|++|+||||+|+.+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 245
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.96 E-value=0.0051 Score=55.34 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=54.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
+-..++|+|..|+|||||.+.+++... -+.++++-+.+.. .+.++.+..+..-+... .+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999987654 3577778777654 34555555443221111 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1223555663 589999999986
No 246
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0041 Score=57.45 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEE-EEEeCCCCC-HHHHHHHHHHHhCCCCCCCCch--
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVV-FSEMSQSPD-IRKIQGEIADKLGLTFREESGS-- 238 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~-~~~i~~~i~~~l~~~~~~~~~~-- 238 (261)
+++++. -..-....|+|++|+|||||++.|.+.... .+-++.+ .+-|.+.+. +.++.+.+=..+-......+..
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 444444 234467899999999999999999986643 2345543 444555433 3444333300110111111111
Q ss_pred ----HHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 239 ----GRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 239 ----~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.....+.+++. .++.+||++|++
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 12223445553 589999999985
No 247
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00095 Score=54.16 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
++.+|+|.|.+|+||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999988774
No 248
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0056 Score=59.44 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+..|.+..++.++++|. .....++.++|++|+||||+|+.+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888888888988776 12456899999999999999999997654
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.0057 Score=59.23 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCccccHHHHHHHHHHhc-------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR-------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++.|.+..++.|.+.+. -...+-+.++|++|+|||+||+.+++...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 345566665555544332 12345588999999999999999998765
No 250
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.94 E-value=0.0022 Score=60.50 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADK 227 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 227 (261)
|.....+.|.++.++.|...+... +.+.++|++|+||||+|+.+.+... ..+|+..+|..- ...+...+++.++.+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344567889888888777766644 4688999999999999999997653 234566777654 344677788888776
Q ss_pred hC
Q 043094 228 LG 229 (261)
Q Consensus 228 l~ 229 (261)
+|
T Consensus 103 ~G 104 (637)
T PRK13765 103 KG 104 (637)
T ss_pred cC
Confidence 65
No 251
>PRK08149 ATP synthase SpaL; Validated
Probab=96.94 E-value=0.0061 Score=54.75 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=52.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
+-..++|+|.+|+|||||++.++.... -+.+++..+.. ..++.++..+........ ..+.+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456889999999999999999986443 23444444544 334566666666543211 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+|+.||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 2233455553 589999999985
No 252
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.93 E-value=0.0012 Score=61.36 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=42.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.+...+......-+.|+|++|+|||++|+.+++..+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445567899999999888877766666778999999999999999987543
No 253
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.92 E-value=0.0037 Score=55.79 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=34.5
Q ss_pred CccccHHHHHHHHHHhcC--------------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 153 DFESRISTLNDILGALRN--------------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++|.++.++.+.-.+.+ ...+.|.++|++|+|||+||+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777766666433331 12468899999999999999999988763
No 254
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.00096 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...|.|.|.||+|||||+..+.....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 46789999999999999999985543
No 255
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0068 Score=58.09 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=36.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD--IRKIQGEIADKLGLTF 232 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~ 232 (261)
..++.++|+.|+||||++.++.........-..+..++.. .+. ..+-++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCc
Confidence 4799999999999999998888765321111234444432 222 3444555556666544
No 256
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.91 E-value=0.00092 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++.|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987653
No 257
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.90 E-value=0.00083 Score=51.02 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 258
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.90 E-value=0.01 Score=47.29 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=31.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCC--------CEEEEEEeCCCCCHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLF--------DLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~i~~~i 224 (261)
.+..|+|++|+||||++..+....-....| ..++|+....+ ...+.+.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl 89 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRL 89 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHH
Confidence 578999999999999999998766532223 24677766555 33444433
No 259
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.90 E-value=0.0048 Score=48.44 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 155 ESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 155 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
+|.+..+.++++.+. ......|.|+|..|+||+.+|+.+++.... .-...+-|+++. .+.+.+-..++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LPEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hhcchhhhhhh
Confidence 566666777766655 233366679999999999999999884431 122334455553 34444444444
No 260
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.89 E-value=0.011 Score=49.99 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=51.3
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~-- 239 (261)
+-+.++|+|.+|+|||+|| ..+.+... -+. ++++-+.+.. ...++.+.+...=... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999995 66665432 334 4677777654 4566666665431111 11111111
Q ss_pred ----HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .++..||++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 1223445554 479999999995
No 261
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.88 E-value=0.007 Score=59.35 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=40.0
Q ss_pred CccccHHHHHHHHHHhc---CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 153 DFESRISTLNDILGALR---NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++||+.+++.|...+. .+...++.+.|.+|+|||+|++.|......
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~ 50 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQ 50 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhc
Confidence 36899999999988766 556679999999999999999999976653
No 262
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.88 E-value=0.0044 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 263
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.88 E-value=0.0067 Score=55.83 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=54.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------C
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE----------------E 235 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------~ 235 (261)
.-.++.|.|++|+|||||+.++....-.+ =+.+++++.. -++.++...+ ++++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~e--Es~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYE--ESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEee--CCHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 44799999999999999999988766422 2345665543 3556666654 455533211 1
Q ss_pred CchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 236 SGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 236 ~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
...+....+.+.+...+.-++|+|-+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 12455667777776445667888864
No 264
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.87 E-value=0.0044 Score=55.90 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=48.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh-----CC-CCCCCCchH------H
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKL-----GL-TFREESGSG------R 240 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-----~~-~~~~~~~~~------~ 240 (261)
-..++|+|..|+|||||++.+...... ..++++..-.+..++.++....+... .. ...+.+... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999988754331 22344443223445555544443332 10 011111111 1
Q ss_pred HHHHHHHHh-CCCcEEEEEeCC
Q 043094 241 ARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 241 ~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.-.+.+++. .++..|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 223455553 479999999985
No 265
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0026 Score=53.10 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=47.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe---CC--CCCHHHHHHHHHHHhCCCCCC-----C--CchH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM---SQ--SPDIRKIQGEIADKLGLTFRE-----E--SGSG 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~--~~~~~~i~~~i~~~l~~~~~~-----~--~~~~ 239 (261)
.-.+++|+|.+|+|||||++.+..-.+.. .+.++..- .. .....+-..+++..++.+... . +.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999998765521 23333321 11 222334455667776644321 1 1111
Q ss_pred HH-HHHHHHHhCCCcEEEEEeC
Q 043094 240 RA-RSLFSRLKKEKRILVILDN 260 (261)
Q Consensus 240 ~~-~~l~~~l~~~kr~LlVlDd 260 (261)
.+ -.+...|. -+.=|+|.|+
T Consensus 115 rQRi~IARALa-l~P~liV~DE 135 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADE 135 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecC
Confidence 11 12344444 4677888885
No 266
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.87 E-value=0.0081 Score=54.02 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+|.++|++|+||||++..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887665
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.86 E-value=0.014 Score=49.53 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+++.++|++|+||||++.+++....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999999998887665
No 268
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.86 E-value=0.013 Score=53.58 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=54.7
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhcc-----CCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-------CCCc
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKN-----NKLFDLVVFSEMSQSPDIRKIQGEIADKLG-LTFR-------EESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~~~-------~~~~ 237 (261)
.-..++|.|-.|+|||+|| -.+.+.... .++-+.++++-+++..+.-.-+.+.++.-+ .... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999996 667776532 124467889999887654332444444433 1110 1111
Q ss_pred hH------HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 238 SG------RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 238 ~~------~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.. ....+.+++. +++..|||+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 1223455553 579999999996
No 269
>PRK06217 hypothetical protein; Validated
Probab=96.85 E-value=0.0011 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=27.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCC--CEEEEE
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLF--DLVVFS 209 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv 209 (261)
..|.|.|++|+||||||+.+...... .+| |..+|-
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 35899999999999999999987653 234 445664
No 270
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.85 E-value=0.0023 Score=58.15 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCC
Q 043094 152 EDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFD 204 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~ 204 (261)
..++|+++.++.+...+..+ .-+.+.|++|+|||+||+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 35789999998888776632 4578999999999999999998665333454
No 271
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.85 E-value=0.0015 Score=57.13 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=41.5
Q ss_pred CcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 150 GYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+...++|.++.+..|+..+.++.+.-+.|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999988888887778888888899999999999999998754
No 272
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.83 E-value=0.0011 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987653
No 273
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0026 Score=60.71 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred CcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++||++++..+++-|....-..-.++|.+|+|||+++.-++...-
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999988843333345789999999998887776553
No 274
>PRK13949 shikimate kinase; Provisional
Probab=96.83 E-value=0.0012 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|+|++|+||||+++.+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987764
No 275
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0072 Score=52.95 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=24.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.-+-+..+|++|.|||-||++|+.....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3567899999999999999999988874
No 276
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.83 E-value=0.00098 Score=53.24 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.83 E-value=0.0031 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|.|+|+.|+||||+++.+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999998776553
No 278
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=51.77 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998765
No 279
>PF14516 AAA_35: AAA-like domain
Probab=96.83 E-value=0.044 Score=47.93 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=66.2
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-----CCHHHHHHHH-
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-----PDIRKIQGEI- 224 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i- 224 (261)
.+-.+.|...-+.+.+.+..+ -..+.|.|+-.+|||+|...+.+..+.. .+. ++++++..- .+...+++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 445667875556666666643 4688999999999999999999888753 343 457766541 2455555444
Q ss_pred ---HHHhCCCCCC--------CCchHHHHHHHHHHh--CCCcEEEEEeCC
Q 043094 225 ---ADKLGLTFRE--------ESGSGRARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 225 ---~~~l~~~~~~--------~~~~~~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.++++.+... .+.......+.+++. .+++.+|+||+|
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEi 136 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEI 136 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEech
Confidence 4555543210 111222333444332 257999999986
No 280
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.82 E-value=0.005 Score=55.23 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=51.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+..... .+..+...+.... .+.++...+...=... ..+.+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346789999999999999998886443 2344455565543 3555555554331111 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .+++.||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1223455553 478999999985
No 281
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.82 E-value=0.0027 Score=52.22 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH-HhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------------C-
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR-KAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTF----------------R- 233 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~-~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------------~- 233 (261)
.-.++.|.|.+|+|||+|+.++.. ..+.. =+.++|++...+ +.++.+.+- +++.+. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 357999999999999999988654 33320 124677777554 355554432 333210 0
Q ss_pred ----CCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 234 ----EESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 234 ----~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
..+.......+.+.+...+...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 1122334555666555334578888863
No 282
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0083 Score=50.88 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHHhc----------C--CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 154 FESRISTLNDILGALR----------N--PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+-|-+...+.|.+... + ...+-|.++|++|.||+.||++|+....
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 4455555555555432 1 2357899999999999999999998776
No 283
>PRK05922 type III secretion system ATPase; Validated
Probab=96.82 E-value=0.0098 Score=53.53 Aligned_cols=86 Identities=19% Similarity=0.328 Sum_probs=51.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC-------CCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTFR-------EESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~-------~~~~~~---- 239 (261)
.-..++|+|..|+|||||.+.+..... .+...++.++. .....+.+.+.......... +.+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 446789999999999999999986543 34444444444 23345566555544322211 111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .++++|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1223556663 589999999986
No 284
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.81 E-value=0.0074 Score=54.52 Aligned_cols=86 Identities=19% Similarity=0.345 Sum_probs=51.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+..... .+.++...+.... ...++...+...-+... .+.+...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999875432 3454444454433 45555555554422211 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.||++||+
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecch
Confidence 1223555553 589999999986
No 285
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.81 E-value=0.00099 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
++|.|+|++|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999864
No 286
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.81 E-value=0.0043 Score=58.52 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=50.9
Q ss_pred CcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043094 150 GYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLG 229 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 229 (261)
....++|.++.++.+...+.... .+.++|++|+||||+|+.+.+.... ..|...+++. ....+...+++.+..+++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 34567888887777776666543 5569999999999999999987653 2333333332 222345566777777665
No 287
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.81 E-value=0.014 Score=50.91 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=37.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEI 224 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i 224 (261)
+-..++|.|..|+|||+|++.+.+... -++++++-+.+..+ +.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 346899999999999999999988643 45788888876543 45666654
No 288
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.80 E-value=0.0085 Score=52.02 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=51.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||.+.+..... -++.+..-+.. .-...++.......-+.. ..+.+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999999886544 23444454443 345566666555442211 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+|..||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1223445553 479999999985
No 289
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0025 Score=53.91 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 163 DILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 163 ~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
+|+..+. .++..+|+|.|.||+||+||.-.+......+.|--.++=|.-|.+++--.|+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4444444 5678899999999999999999998888766655556667778888766655
No 290
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.80 E-value=0.0011 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998764
No 291
>PF13245 AAA_19: Part of AAA domain
Probab=96.80 E-value=0.0036 Score=42.26 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=19.7
Q ss_pred CceEEEEEccCCCcHH-HHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKT-MLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKT-tLa~~v~~~~ 197 (261)
+.++..|.|++|+||| |+++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999 5666666555
No 292
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.79 E-value=0.0093 Score=53.83 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=59.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCC--CCC---------EEEEEEeCCCCCHHHHHHHHHHHhC-CCC-------
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNK--LFD---------LVVFSEMSQSPDIRKIQGEIADKLG-LTF------- 232 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~l~-~~~------- 232 (261)
.-+.++|.|-+|+|||||+..+.+..+..+ -.| .++++-+.+.....+.+...+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 446789999999999999999998765200 012 5678888888777777777666655 211
Q ss_pred CCCCchH------HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 233 REESGSG------RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~------~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.+.+... ....+.+++. .+++.|+++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 1223566766 479999999996
No 293
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.79 E-value=0.0054 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 294
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.79 E-value=0.0013 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|+|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999987764
No 295
>PRK13947 shikimate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.78 E-value=0.0012 Score=47.81 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|-|+|.+|+|||+||+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999886654
No 297
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=53.71 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|+|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987664
No 298
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0086 Score=55.34 Aligned_cols=27 Identities=48% Similarity=0.604 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
+.=|.+||++|+|||-||++|+|....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC
Confidence 556789999999999999999998874
No 299
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.77 E-value=0.0011 Score=52.59 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 300
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.77 E-value=0.0028 Score=55.38 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=38.6
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...++|.++.+..|+-.+.++...-+.|.|.+|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45678988888887766667767778899999999999999997544
No 301
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0014 Score=52.78 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..+|+|-||=|+||||||+.+.+....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999988763
No 302
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.76 E-value=0.0023 Score=49.42 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
..+|-|.|.+|+||||||+.+.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4688899999999999999999988753
No 303
>PRK09087 hypothetical protein; Validated
Probab=96.76 E-value=0.0033 Score=51.87 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.+.|+|++|+|||+|++.+++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 346689999999999999999987643
No 304
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.75 E-value=0.02 Score=47.16 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.-..+.|.|.+|+|||||+..+....-.+ -..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 34789999999999999999876543211 24567887644
No 305
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.75 E-value=0.002 Score=53.77 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=40.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEE-----EeC--CCCCHHHH--HHHHHHHhCCCCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFS-----EMS--QSPDIRKI--QGEIADKLGLTFRE 234 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv-----~vs--~~~~~~~i--~~~i~~~l~~~~~~ 234 (261)
.+..|.++||+|+||||..|.++.+...+..-.+++=. .+. -..++++. .++.+++.+..+++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 45688999999999999999999888754433333211 111 22344443 46778877665543
No 306
>PRK14529 adenylate kinase; Provisional
Probab=96.74 E-value=0.0078 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.|.|.|++|+||||+++.+......
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3789999999999999999987763
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.74 E-value=0.007 Score=55.03 Aligned_cols=84 Identities=26% Similarity=0.338 Sum_probs=49.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREE--SGSGRARSLFSRLKK 250 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 250 (261)
-.++.|.|.+|+|||||+.++......+ -..++|++... +...+... ++.++...... ........+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4689999999999999999998766421 23467776544 33444332 45565432210 001123455555544
Q ss_pred CCcEEEEEeCC
Q 043094 251 EKRILVILDNI 261 (261)
Q Consensus 251 ~kr~LlVlDdv 261 (261)
.+.-+||+|.+
T Consensus 155 ~~~~lVVIDSI 165 (446)
T PRK11823 155 EKPDLVVIDSI 165 (446)
T ss_pred hCCCEEEEech
Confidence 45668888964
No 308
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.74 E-value=0.0015 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|+|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 309
>PRK14527 adenylate kinase; Provisional
Probab=96.74 E-value=0.0018 Score=51.91 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987665
No 310
>PRK06851 hypothetical protein; Provisional
Probab=96.73 E-value=0.043 Score=48.45 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEE
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSE 210 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 210 (261)
..--+++.|.|++|+|||||++.++.....+ .++..++=|
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC 250 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHC 250 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 3445889999999999999999999988643 355544433
No 311
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.73 E-value=0.012 Score=53.33 Aligned_cols=90 Identities=22% Similarity=0.217 Sum_probs=57.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCC--CEEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLF--DLVVFSEMSQSP-DIRKIQGEIADKLGLTF-------REESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~-- 239 (261)
.-..++|.|-.|+|||||+..+.+.....+.+ ..++++-+.+.. .+.++++.+...=.... .+.+...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34678999999999999999999877532111 156777776644 45667776654321110 1111111
Q ss_pred ----HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
....+.+++. ++++.||++||+
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 1234667776 589999999985
No 312
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.73 E-value=0.0015 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.++|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987764
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.73 E-value=0.003 Score=52.58 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 161 LNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
...++..+. .++..+|+|.|+||+||+||.-.+......+.+=-.++=|.-|.+++--.|+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 344555444 4577899999999999999999998877654433345555666677655544
No 314
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.73 E-value=0.0055 Score=55.04 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCccccHHHHHHHHHHhc-------CC---------CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR-------NP---------DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.|...+. .. ....+.++|++|+|||+||+.+.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 347888887776644331 10 135689999999999999999987654
No 315
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.71 E-value=0.0025 Score=50.65 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
.+++.|+|+.|+|||||++.+..... ..|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 47899999999999999999998765 45654444433
No 316
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.0019 Score=52.09 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+..+|.|+|++|+||||||+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999988653
No 317
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.71 E-value=0.0018 Score=50.91 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999977653
No 318
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.71 E-value=0.0028 Score=53.34 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS 214 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 214 (261)
+.-+++.|+|.+|+|||+++.+...... .+...++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC
Confidence 3568999999999999999999988776 34778999988764
No 319
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.70 E-value=0.012 Score=49.66 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=29.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.-.++.|.|++|+|||+++.++....-.+ =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 35789999999999999999976544221 23567777764
No 320
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.70 E-value=0.004 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.-.+|.+.|..|+||||+++.+......
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999987653
No 321
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.69 E-value=0.0028 Score=51.24 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEE
Q 043094 157 RISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSE 210 (261)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 210 (261)
+..+....++.|. +..++.+.|++|+|||.||-...-+.-..++|+..+++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3444555666666 567899999999999999999886654447788877773
No 322
>PRK13975 thymidylate kinase; Provisional
Probab=96.69 E-value=0.0017 Score=52.02 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=23.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|.|+.|+||||+++.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998776
No 323
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.69 E-value=0.0071 Score=54.60 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=51.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
+-..++|.|..|+|||||++.+...... +..+.+-+.+ ...+.++.+.+...-+... .+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999865432 3333344443 3445566566554322111 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .++..|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1223455553 579999999985
No 324
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.69 E-value=0.0078 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..+|+|+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 325
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.69 E-value=0.0043 Score=50.73 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=26.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD 216 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 216 (261)
.|+|+|-||+||||+|..+....-.+.-|+. .-|....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCC
Confidence 6899999999999999996655543332333 3344444444
No 326
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.69 E-value=0.0079 Score=50.75 Aligned_cols=54 Identities=26% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
++.+..++..+ ..+.+.|++|+|||+||+.+..... . ...+++++...+..+++
T Consensus 11 ~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHHh
Confidence 44455555432 3566899999999999999986432 1 23455666655555554
No 327
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.68 E-value=0.0022 Score=52.07 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=26.9
Q ss_pred hcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 168 LRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 168 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+..+++++|+++|+.|+|||||...+.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4466899999999999999999999987653
No 328
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0015 Score=52.15 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+.|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 329
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.67 E-value=0.013 Score=52.94 Aligned_cols=89 Identities=18% Similarity=0.311 Sum_probs=57.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-PDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
+-..++|.|.+|+|||||+..+..+... .+=+.++++-+.+. ..+.++++++...=... ..+.+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4567899999999999999998877653 22346788877664 44577777775431111 11111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
..-.+.+++. +++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 1234566774 378999999986
No 330
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.67 E-value=0.0088 Score=48.64 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.|+|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999986554
No 331
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.67 E-value=0.0019 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...|.|+|+.|+|||||++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999997754
No 332
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.66 E-value=0.0014 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043094 176 LGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~ 197 (261)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 333
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.66 E-value=0.0092 Score=51.38 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=64.5
Q ss_pred CccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCC-CEEEEEEeCCCCCH-HHHHHHHHH
Q 043094 153 DFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLF-DLVVFSEMSQSPDI-RKIQGEIAD 226 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~i~~~i~~ 226 (261)
.++|..++..++-.|+. .+...-+.|+|+.|.|||+|...+..+.+ .| +..+-|.+....-. .-.++.|..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 57788888888877776 34556778999999999999999888733 22 22344444433222 224566666
Q ss_pred HhCCCCC-----CCCchHHHHHHHHHHhC-----CCcEEEEEeC
Q 043094 227 KLGLTFR-----EESGSGRARSLFSRLKK-----EKRILVILDN 260 (261)
Q Consensus 227 ~l~~~~~-----~~~~~~~~~~l~~~l~~-----~kr~LlVlDd 260 (261)
|+..... ..+-.+....+...|+. +-+++.|||+
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldE 145 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDE 145 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeeh
Confidence 5532211 12334556677777762 2246777765
No 334
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.66 E-value=0.0028 Score=55.23 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
|.+...++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34456788998888877655544455568999999999999999997654
No 335
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0015 Score=50.85 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~ 194 (261)
.|.|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 336
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.65 E-value=0.007 Score=54.50 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=52.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-PDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+.+... .+..++..+... ..+.+++.+....=... ....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999876443 455566666553 44556666553310000 01111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .+++.||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1223455554 578999999985
No 337
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.65 E-value=0.0031 Score=49.56 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998874
No 338
>PRK13695 putative NTPase; Provisional
Probab=96.63 E-value=0.0032 Score=49.57 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.|.|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887653
No 339
>PLN02165 adenylate isopentenyltransferase
Probab=96.62 E-value=0.003 Score=54.74 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.6
Q ss_pred cCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 169 RNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 169 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+....+++|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455667999999999999999999987753
No 340
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.62 E-value=0.0091 Score=46.97 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKL 228 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 228 (261)
++.|.|.+|+||||+|..+...... ..+++..... ...+..+.|..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHH
Confidence 6899999999999999999866431 1234444443 3445666665443
No 341
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.61 E-value=0.0081 Score=53.21 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.+.+++.+.......+-|.|.||+|||+|.+.+.+..+.
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 455556565666788899999999999999999988864
No 342
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.61 E-value=0.012 Score=53.11 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCH-HHHHHHHHHHhCCCC---------CCCCch--
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDI-RKIQGEIADKLGLTF---------REESGS-- 238 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~~l~~~~---------~~~~~~-- 238 (261)
..-..++|+|..|+|||||++.+..... -+..+...+...... .+..+.. ++... .+.+..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~---l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKN---LGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHH---hcCcccceEEEEECCCCCHHHh
Confidence 3456889999999999999999986543 344555555554433 3333322 22210 001100
Q ss_pred ----HHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 239 ----GRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 239 ----~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.....+.+++. .+++.||++||+
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~Dsl 255 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSV 255 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 01233555553 589999999986
No 343
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.60 E-value=0.0017 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998754
No 344
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.59 E-value=0.012 Score=48.48 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=39.9
Q ss_pred CCcCCccccHHHHHHHHH----HhcCCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 149 KGYEDFESRISTLNDILG----ALRNPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.....++|.+.+.+.|++ ++.+...--+.+||--|+||++|++++.+....
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 445567888777776654 344566778999999999999999999998764
No 345
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.59 E-value=0.01 Score=53.33 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=50.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+..... -+..+..-+.+.. ...++....+.+-+.. ..+.+...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999998876443 2333333444433 3455555544432211 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1223455553 589999999986
No 346
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.58 E-value=0.0022 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997553
No 347
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.58 E-value=0.0038 Score=48.31 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=27.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
+++|+|+.|+|||||+..+....+.+ .+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecc
Confidence 58999999999999999999877642 3544444433
No 348
>PRK06620 hypothetical protein; Validated
Probab=96.58 E-value=0.0018 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+-|+|++|+|||+|++.+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 5689999999999999999877653
No 349
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.58 E-value=0.028 Score=48.82 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999987765
No 350
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.55 E-value=0.0087 Score=53.75 Aligned_cols=86 Identities=24% Similarity=0.385 Sum_probs=50.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.+....+ .+....+.+.. ...+.++.+..+..-+... .+.+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999998886543 22333333333 3445666665544322111 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.||++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1223555663 478999999985
No 351
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.55 E-value=0.012 Score=53.02 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=51.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------CCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLTF-------REESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~~~~~---- 239 (261)
.-..++|+|..|+|||||++.++...+. ...++. -+.+ .....+++...+..-+... .+.+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4468899999999999999999876542 112332 3333 3667777776665433211 1111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.+..+.+++. .+++.||++||+
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 1223444553 479999999985
No 352
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.55 E-value=0.0079 Score=53.75 Aligned_cols=47 Identities=26% Similarity=0.277 Sum_probs=36.1
Q ss_pred CCccccHHHHHHHHHHhcC--------------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALRN--------------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+..++.+ .....|.++|++|+|||+||+.+.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577888877777665532 1146889999999999999999998765
No 353
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0021 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-.|++|+|++|+|||||.+++..-..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 457999999999999999999975443
No 354
>PRK04182 cytidylate kinase; Provisional
Probab=96.54 E-value=0.0025 Score=50.20 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987764
No 355
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.54 E-value=0.013 Score=53.25 Aligned_cols=89 Identities=25% Similarity=0.286 Sum_probs=57.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccC---CCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH-
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNN---KLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~- 239 (261)
.-..++|.|-.|+|||||+..+.+..... ..+ .++++-+.+.. .+.++++.+...=... ..+.+...
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 34678999999999999999999876532 122 56777786654 4567777776542111 11111111
Q ss_pred -----HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 240 -----RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 240 -----~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
....+.+++. +++++||++||+
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 249 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDM 249 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence 1234667775 579999999985
No 356
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.53 E-value=0.0028 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|.|.|.+|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 357
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.52 E-value=0.0094 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 358
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.52 E-value=0.011 Score=51.07 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHH
Q 043094 152 EDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKI 220 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 220 (261)
+.++-.......++.++.. .+.|.|.|++|+||||+|+.+...... + .+.|.++...+..++
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~----~-~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNW----P-CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCC----C-eEEEEecCCCChhhc
Confidence 3444444445556666653 246899999999999999999987752 2 234555555444443
No 359
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.52 E-value=0.031 Score=52.47 Aligned_cols=108 Identities=24% Similarity=0.229 Sum_probs=71.4
Q ss_pred cCCccccHHHHHHHHHHhc----C-CCceEEEEEccCCCcHHHHHHHHHHHhc------cCCCCCEEEEEEeCCCCCHHH
Q 043094 151 YEDFESRISTLNDILGALR----N-PDISMLGICGMGGIGKTMLAKEVARKAK------NNKLFDLVVFSEMSQSPDIRK 219 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~ 219 (261)
+..+.+|+.+..+|-.++. + +....+=|.|-+|+|||..+..|.+..+ ....|++ +.|+--.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 3445678888888877765 3 2334888999999999999999998553 1234533 4455555566889
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHh----CCCcEEEEEeCC
Q 043094 220 IQGEIADKLGLTFREESGSGRARSLFSRLK----KEKRILVILDNI 261 (261)
Q Consensus 220 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv 261 (261)
+...|..++.+.... -......|..+.. ..+.++|++|++
T Consensus 474 ~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDEl 517 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDEL 517 (767)
T ss_pred HHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccH
Confidence 999999988754321 1223344444443 245788888874
No 360
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.52 E-value=0.011 Score=54.00 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=48.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CchHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREE--SGSGRARSLFSRLK 249 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 249 (261)
.-.++.|.|.+|+|||||+.++........ ..++|++... +...+... +..++...... ........+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 347899999999999999999976554221 2466776543 34443322 33444332110 00112345555555
Q ss_pred CCCcEEEEEeCC
Q 043094 250 KEKRILVILDNI 261 (261)
Q Consensus 250 ~~kr~LlVlDdv 261 (261)
..+.-++|+|.+
T Consensus 168 ~~~~~~vVIDSI 179 (454)
T TIGR00416 168 EENPQACVIDSI 179 (454)
T ss_pred hcCCcEEEEecc
Confidence 445667888964
No 361
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.51 E-value=0.0094 Score=53.70 Aligned_cols=86 Identities=17% Similarity=0.354 Sum_probs=46.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCc------
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT-------FREESG------ 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~------ 237 (261)
+-..++|+|..|+|||||++.+..... .+..+...+.. .....++....+..-+.. ....+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 457899999999999999999876543 23333333332 223334443433332211 111110
Q ss_pred hHHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 238 SGRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 238 ~~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
......+.+++. .++..||++||+
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecch
Confidence 111223334432 478999999985
No 362
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.51 E-value=0.0025 Score=52.94 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=23.4
Q ss_pred EEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 178 ICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 178 I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
|+||+|+||||+++.+.+.....+ ..++-|++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999887532 3345565543
No 363
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.025 Score=47.33 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++=|.++|++|.|||-+|++|.|...
T Consensus 210 ppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccC
Confidence 456788999999999999999997665
No 364
>PRK13948 shikimate kinase; Provisional
Probab=96.50 E-value=0.0032 Score=50.07 Aligned_cols=28 Identities=21% Similarity=0.429 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.....|.++||.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999987754
No 365
>PLN02200 adenylate kinase family protein
Probab=96.50 E-value=0.003 Score=52.36 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+|.|+|++|+||||+|+.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999986553
No 366
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0024 Score=52.48 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-.+++|+|.+|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 367
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.49 E-value=0.0028 Score=47.15 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=17.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|+|.+|+||||+|+.+.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 57899999999999999998765
No 368
>PRK13946 shikimate kinase; Provisional
Probab=96.48 E-value=0.0027 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.|.++|++|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 369
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.47 E-value=0.0028 Score=50.61 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998653
No 370
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.47 E-value=0.0024 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.|+|++|+||||+|+.+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987643
No 371
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.47 E-value=0.0028 Score=45.69 Aligned_cols=22 Identities=45% Similarity=0.427 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
-..++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999976
No 372
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.0025 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-..++|+|++|+|||||.+.+.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999984
No 373
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.46 E-value=0.016 Score=52.82 Aligned_cols=89 Identities=19% Similarity=0.303 Sum_probs=56.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------------CCCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGLT--------------FREES 236 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------------~~~~~ 236 (261)
.-..++|.|.+|+|||||+..+..+... .+=+.++++-+.+.. .+.++...+...-... ....+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 4567899999999999999988877321 122778888887754 4577777776521110 00111
Q ss_pred chH------HHHHHHHHHhC-C-CcEEEEEeCC
Q 043094 237 GSG------RARSLFSRLKK-E-KRILVILDNI 261 (261)
Q Consensus 237 ~~~------~~~~l~~~l~~-~-kr~LlVlDdv 261 (261)
... ....+.+++.. + +++||++||+
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl 271 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNI 271 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 111 22346677752 4 4999999996
No 374
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.45 E-value=0.02 Score=52.79 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH-hccCCCC-CEEEEEEeCCCCCHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK-AKNNKLF-DLVVFSEMSQSPDIRKIQGE 223 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~i~~~ 223 (261)
.-+++.|.|++|+||||+|.++... ... + +.++||+... ++.++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEec--CHHHHHHH
Confidence 4579999999999999999998544 331 2 3577787753 44444444
No 375
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.45 E-value=0.04 Score=45.61 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
-.++.|.|.+|+|||+++..+..+.-.... ..++|++... +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHH
Confidence 368899999999999999988766543212 2356665543 4455555543
No 376
>PRK14532 adenylate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhc
Q 043094 176 LGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|.++|++|+||||+|+.+.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999986553
No 377
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.028 Score=53.38 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=54.2
Q ss_pred CccccHHHHHHHHHHhc---------CC---CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHH
Q 043094 153 DFESRISTLNDILGALR---------NP---DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKI 220 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 220 (261)
++=|-++-+..|.+-+. +. +.+=|.++|++|+|||-||++|+....- -|++|-.+ ++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP----EL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP----EL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----HH
Confidence 44566766667766543 22 2456789999999999999999987763 23444322 12
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 221 QGEIADKLGLTFREESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
+.- .+|. .++..+.+.++-++.++|+|.||++
T Consensus 742 LNM---YVGq------SE~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 742 LNM---YVGQ------SEENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred HHH---Hhcc------hHHHHHHHHHHhhccCCeEEEeccc
Confidence 111 1121 1233445555555568999999974
No 378
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.006 Score=53.97 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=42.1
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|....+++|.+...+.|.+.+..+.+ .-+.++|+.|+||||+|..+....-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556789999999999998886665 5689999999999999998887653
No 379
>COG1158 Rho Transcription termination factor [Transcription]
Probab=96.42 E-value=0.056 Score=46.60 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=59.6
Q ss_pred HHHHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC--CCCHHHHHHHHHHHhC-CCCC--CC
Q 043094 162 NDILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ--SPDIRKIQGEIADKLG-LTFR--EE 235 (261)
Q Consensus 162 ~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~-~~~~--~~ 235 (261)
..+++++. -++-..-.||.++-.|||+|.|.++|..-. .|-+|..||-+-. +-.+.++++.+-...- ...+ +.
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~-N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~ 239 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITT-NHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPS 239 (422)
T ss_pred hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhc-CCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcch
Confidence 34666555 234456789999999999999999998864 6889999886533 3445666666532221 1111 11
Q ss_pred CchHHHHHH----HHHHhCCCcEEEEEeC
Q 043094 236 SGSGRARSL----FSRLKKEKRILVILDN 260 (261)
Q Consensus 236 ~~~~~~~~l----~~~l~~~kr~LlVlDd 260 (261)
.....++.+ ......+|.++|.||-
T Consensus 240 ~HvqVAE~viEkAKRlVE~~kDVVILLDS 268 (422)
T COG1158 240 RHVQVAEMVIEKAKRLVEHGKDVVILLDS 268 (422)
T ss_pred hhHHHHHHHHHHHHHHHHcCCcEEEEehh
Confidence 222223222 2233346778888884
No 380
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.42 E-value=0.0025 Score=49.57 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.8
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043094 176 LGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~ 196 (261)
|+|+|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999876
No 381
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.42 E-value=0.0031 Score=49.93 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++.|+|++|+|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998665
No 382
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.42 E-value=0.016 Score=52.42 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-------CCCCCCCchH----
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLG-------LTFREESGSG---- 239 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-------~~~~~~~~~~---- 239 (261)
..-..++|+|..|+|||||++.+...... -...+++.=-+.-+..++....+..-+ ....+.+...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998865432 123333321223334544443222111 0111111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.||++||+
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCh
Confidence 1223555653 589999999985
No 383
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.0029 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.+++.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 384
>PRK14531 adenylate kinase; Provisional
Probab=96.41 E-value=0.0035 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.192 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987764
No 385
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.40 E-value=0.014 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987764
No 386
>PRK08356 hypothetical protein; Provisional
Probab=96.40 E-value=0.0035 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
..+|.|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999993
No 387
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.40 E-value=0.013 Score=51.07 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=29.0
Q ss_pred HHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 163 DILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 163 ~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.|++.+. .++..+|+|.|.+|+|||||+..+......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444443 456789999999999999999998877664
No 388
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.39 E-value=0.0035 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..+.|.|+|++|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678899999999999999999754
No 389
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.39 E-value=0.0035 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999997764
No 390
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.38 E-value=0.029 Score=52.02 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=51.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------------CCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR----------------EES 236 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------------~~~ 236 (261)
-.++.|.|.+|+|||+|+..+....-. .-..++|++.... +.++.+.+ .+++.+.. ...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~--~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR--RGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 468889999999999999998876542 2346778876553 55555443 34443210 011
Q ss_pred chHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 237 GSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 237 ~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
..+....+...+...+.-++|+|.+
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 2334455666565445557888964
No 391
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.38 E-value=0.044 Score=46.26 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
-.++.|.|.+|+||||++..+....-.. +=..++|+++.. +..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHH
Confidence 3588899999999999999987665321 113467777655 34455555443
No 392
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.38 E-value=0.0036 Score=48.85 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|.|++|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987653
No 393
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.37 E-value=0.034 Score=47.09 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 162 NDILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 162 ~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.++..+. ..+...++|+|++|+|||||.+.+.....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 33444443 44567899999999999999999986654
No 394
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.37 E-value=0.033 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+..|+|++|+|||+|+..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 395
>PRK06820 type III secretion system ATPase; Validated
Probab=96.37 E-value=0.021 Score=51.60 Aligned_cols=86 Identities=15% Similarity=0.337 Sum_probs=48.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEIADKLGL-------TFREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~-------~~~~~~~~~---- 239 (261)
.-..++|+|.+|+|||||++.+..... -+..++.-+.... .+..+....+..=.. ...+.+...
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 345889999999999999998876432 3455555565542 223333332211000 001111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.||++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (440)
T PRK06820 238 LSTATTIAEYFRDRGKKVLLMADSL 262 (440)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1223455554 589999999985
No 396
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.37 E-value=0.0097 Score=50.44 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHHHhc-------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 154 FESRISTLNDILGALR-------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|..-..+.++..+. ..++-+++.+|.+|+||..+++.+.++..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 3444444444444443 34677999999999999999999998764
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.37 E-value=0.003 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998765
No 398
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.36 E-value=0.013 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987653
No 399
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.35 E-value=0.01 Score=51.13 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.7
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.+...+|+|+|++|+|||||+..+......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999886653
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.35 E-value=0.0029 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3588999999999999999998544
No 401
>PRK06761 hypothetical protein; Provisional
Probab=96.34 E-value=0.0086 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++|.|.|++|+||||+++.+++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998875
No 402
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.009 Score=55.12 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.+.++|++|+|||.||+++++...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence 456889999999999999999998554
No 403
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.32 E-value=0.0034 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+.|.++|..|+|||||++.+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999998654
No 404
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.32 E-value=0.024 Score=51.75 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=54.6
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSP-DIRKIQGEIADKLGLTF-------REESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~~~~-- 239 (261)
.-..++|.|..|+|||||| ..+.+... -+. ++++-+.+.. .+.++.+.+...=.... ...+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 4467899999999999996 57777542 354 7888888764 45667776655421111 1111111
Q ss_pred ----HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. +++..|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 1223555553 589999999996
No 405
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.31 E-value=0.006 Score=53.78 Aligned_cols=83 Identities=30% Similarity=0.535 Sum_probs=56.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL-VVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKK 250 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 250 (261)
..+.+.++|.||+||||++-.+.+ .. .-|.. +.++.+.+--++..+.-.....++.+..+ .+.....+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 457899999999999999999988 44 34654 55665555555555555555557655432 2333446666665
Q ss_pred CCcEEEEEeC
Q 043094 251 EKRILVILDN 260 (261)
Q Consensus 251 ~kr~LlVlDd 260 (261)
++|.++|+||
T Consensus 87 ~rr~llvldn 96 (414)
T COG3903 87 DRRALLVLDN 96 (414)
T ss_pred hhhHHHHhcC
Confidence 6889999987
No 406
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.0089 Score=53.25 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=25.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+-|||..|+|||.|++.+.+....
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~ 139 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALA 139 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998873
No 407
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.30 E-value=0.011 Score=51.29 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=41.0
Q ss_pred CcCCccccHHHHH---HHHHHhcCCC--ceEEEEEccCCCcHHHHHHHHHHHhccCCCC
Q 043094 150 GYEDFESRISTLN---DILGALRNPD--ISMLGICGMGGIGKTMLAKEVARKAKNNKLF 203 (261)
Q Consensus 150 ~~~~~~gr~~~~~---~l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F 203 (261)
....++|..+..+ -++++..+++ -+.|.++|++|+|||+||-.+.......-.|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 3567888765443 3666666543 4789999999999999999999988765556
No 408
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.30 E-value=0.019 Score=52.21 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=51.8
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~-- 239 (261)
.-..++|.|..|+|||||| ..+.+.. .-+. ++++-+.+.. .+.++.+.+...=... ....+...
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 3467899999999999995 5555543 2343 4888887654 4566776665431111 01111111
Q ss_pred ----HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. ++++.|||+||+
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDL 242 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcCh
Confidence 1123455554 479999999996
No 409
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.27 E-value=0.03 Score=50.50 Aligned_cols=87 Identities=21% Similarity=0.355 Sum_probs=50.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCchH---
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT-------FREESGSG--- 239 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~~~--- 239 (261)
..-..++|+|..|+|||||.+.+..... .+....+.+.. ...+.++..+....-... ....+...
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 3456789999999999999999987543 34444455544 344555655544332111 11111111
Q ss_pred ---HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ---RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ---~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. .+++.|+++||+
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1123444443 478999999986
No 410
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.26 E-value=0.0079 Score=46.70 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
++.|.+++.+ +++.++|..|+|||||...+...
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 5667777764 78999999999999999999865
No 411
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.25 E-value=0.0038 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35789999999999999999999643
No 412
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.25 E-value=0.01 Score=47.94 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=30.6
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHH
Q 043094 151 YEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..+++|.+..+..|.-...+ ..-+.++|++|+|||+||+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 35678887776666544443 36789999999999999999985
No 413
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.24 E-value=0.018 Score=52.12 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=48.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-PDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||.+.+..... -+..+...+... -...++....+..-+.. ..+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~ 237 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG 237 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999886543 233333444443 23444544443321111 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .+++.||++||+
T Consensus 238 ~~~a~t~AE~frd~G~~Vll~~Dsl 262 (440)
T TIGR01026 238 AYVATAIAEYFRDQGKDVLLLMDSV 262 (440)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122345553 579999999985
No 414
>PRK15453 phosphoribulokinase; Provisional
Probab=96.23 E-value=0.0057 Score=51.78 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999986553
No 415
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.23 E-value=0.0051 Score=47.77 Aligned_cols=28 Identities=39% Similarity=0.628 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
.++++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4789999999999999999998766543
No 416
>PRK02496 adk adenylate kinase; Provisional
Probab=96.23 E-value=0.0053 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.|+|++|+||||+|+.+.....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 417
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.066 Score=46.44 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 152 EDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++|.+...+.+...+..+.+ ....++|+.|+||+++|..+.+..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999998886664 789999999999999998888764
No 418
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.22 E-value=0.0047 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+|.++|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998654
No 419
>PRK14528 adenylate kinase; Provisional
Probab=96.21 E-value=0.0053 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999986654
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.20 E-value=0.01 Score=51.68 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+.|.++.++++++.+. +..-+++-++|+.|.|||||+..+-+-.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999887 44568999999999999999999987665
No 421
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.20 E-value=0.0042 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.+....
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998643
No 422
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.20 E-value=0.032 Score=48.32 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 159 STLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 159 ~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345566666663 567899999999999999999999888754
No 423
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.19 E-value=0.016 Score=50.62 Aligned_cols=63 Identities=22% Similarity=0.148 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHH
Q 043094 154 FESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGE 223 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 223 (261)
++|.+.....+...+.. -+-+.+.|++|+|||+||+.+...... ...+|.+.....+.++.-.
T Consensus 26 ~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCc
Confidence 67777776666555442 245789999999999999999977762 2356677777777666533
No 424
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.19 E-value=0.0092 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....|.++|++|+||||+++.+.+...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999987653
No 425
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.19 E-value=0.012 Score=53.07 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=47.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCCCCchH----
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ-SPDIRKIQGEIADKLGLT-------FREESGSG---- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~~~~~~---- 239 (261)
.-..++|+|..|+|||||.+.+..... .+.++...+.. .....++.+.++..=... ..+.+...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~ 249 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQG 249 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999986543 23333333332 234445554443211100 11111111
Q ss_pred --HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 --RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 --~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .++.+|+++||+
T Consensus 250 ~~~a~tiAEyfrd~G~~Vll~~Dsl 274 (455)
T PRK07960 250 AAYATRIAEDFRDRGQHVLLIMDSL 274 (455)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecch
Confidence 1123455553 479999999986
No 426
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.19 E-value=0.0075 Score=48.59 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 165 LGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 165 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
+..+...+-++..|.|++|+||||+++.+.......
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 333333445788899999999999999998777653
No 427
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.19 E-value=0.0044 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.++...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 428
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.18 E-value=0.036 Score=46.68 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|.+|+||||+++.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 429
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.18 E-value=0.0045 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEccCCCcHHHHHHHHHHHhc
Q 043094 178 ICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 178 I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|+|+||+||||+|+.+.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998764
No 430
>PRK01184 hypothetical protein; Provisional
Probab=96.17 E-value=0.0044 Score=49.18 Aligned_cols=18 Identities=39% Similarity=0.781 Sum_probs=16.6
Q ss_pred eEEEEEccCCCcHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAK 191 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~ 191 (261)
.+|.|+|++|+||||+++
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999987
No 431
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0048 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887655
No 432
>PLN02796 D-glycerate 3-kinase
Probab=96.17 E-value=0.0055 Score=53.39 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.+-+|+|.|..|+|||||++.+......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4578999999999999999999987653
No 433
>PLN02348 phosphoribulokinase
Probab=96.16 E-value=0.0058 Score=54.07 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+...+|+|.|.+|+||||+|+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999998764
No 434
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.16 E-value=0.0069 Score=47.11 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
++++|+|..|+|||||+..+......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 435
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.16 E-value=0.0043 Score=49.15 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~ 195 (261)
+|+|+|++|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 436
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.14 E-value=0.0051 Score=55.07 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..-.+.|+|+|.+|+|||||++.+.+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999997654
No 437
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.13 E-value=0.0047 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 438
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.13 E-value=0.0049 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 439
>COG4240 Predicted kinase [General function prediction only]
Probab=96.12 E-value=0.071 Score=43.63 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=48.4
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-----CCCCCCCchHHHHHH
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLG-----LTFREESGSGRARSL 244 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-----~~~~~~~~~~~~~~l 244 (261)
.+++-+++|.|+-|+||||++..+++....+.- +.....++..-+-...-.-.++++.. ...++..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 346789999999999999999999998875432 34555555443333334444555532 112233334444445
Q ss_pred HHHHhCCC
Q 043094 245 FSRLKKEK 252 (261)
Q Consensus 245 ~~~l~~~k 252 (261)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 55554333
No 440
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.11 E-value=0.006 Score=49.83 Aligned_cols=24 Identities=38% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|+|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999986654
No 441
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.11 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+=-.++||||+|||++..+++|..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 3457899999999999999998775
No 442
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=96.10 E-value=0.036 Score=50.93 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=53.7
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSP-DIRKIQGEIADKLGLT-------FREESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~~~-- 239 (261)
.-..++|.|..|+|||+|| ..+.+.. ..+. ++++-+.+.. .+.++.+.+...=... ....+...
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 4467899999999999995 6666653 2455 4888887754 4566777666532111 11111111
Q ss_pred ----HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
....+.+++. +|++.|||+||+
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddl 262 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDL 262 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecch
Confidence 1223455554 479999999996
No 443
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.074 Score=44.18 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=53.2
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCch----HHHHHH
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMS-QSPDIRKIQGEIADKLGLTFREESGS----GRARSL 244 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~~----~~~~~l 244 (261)
..+.+++.++|.-|+|||.+.+......... +.+. |.++ +..+...+...|+..+..+.. .+.. .....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHH
Confidence 4566799999999999999999555443321 1222 4443 345677788888888876322 1111 122334
Q ss_pred HHHHhCCCc-EEEEEeC
Q 043094 245 FSRLKKEKR-ILVILDN 260 (261)
Q Consensus 245 ~~~l~~~kr-~LlVlDd 260 (261)
.....+++| ..++.||
T Consensus 123 ~al~~~g~r~v~l~vdE 139 (269)
T COG3267 123 AALVKKGKRPVVLMVDE 139 (269)
T ss_pred HHHHHhCCCCeEEeehh
Confidence 444445677 7777776
No 444
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.09 E-value=0.0038 Score=47.20 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 156 SRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 156 gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|....++++.+.+. ......|.|+|.+|+||+++|+.+++...
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 44455555555544 23445678999999999999999998655
No 445
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.08 E-value=0.011 Score=51.70 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=36.1
Q ss_pred cCCccccHHHHH---HHHHHhcCCC--ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 151 YEDFESRISTLN---DILGALRNPD--ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 151 ~~~~~gr~~~~~---~l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
..+++|..+..+ -+++++...+ -+.|.+.|++|+|||+||-.+.......
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 467899765544 3567777665 4789999999999999999999888743
No 446
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.08 E-value=0.0044 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998654
No 447
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.07 E-value=0.0087 Score=45.93 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999877643
No 448
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.015 Score=54.07 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=38.5
Q ss_pred CcCCccccHH---HHHHHHHHhcCCC---------ceEEEEEccCCCcHHHHHHHHHHHhccC
Q 043094 150 GYEDFESRIS---TLNDILGALRNPD---------ISMLGICGMGGIGKTMLAKEVARKAKNN 200 (261)
Q Consensus 150 ~~~~~~gr~~---~~~~l~~~l~~~~---------~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 200 (261)
...++-|.++ ++.++++.|.+++ ++=+.++|++|.|||.||+++.....+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3455667655 4566677777542 4567899999999999999999888864
No 449
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.023 Score=50.23 Aligned_cols=83 Identities=30% Similarity=0.410 Sum_probs=54.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--chHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREES--GSGRARSLFSRLKK 250 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~--~~~~~~~l~~~l~~ 250 (261)
-.+|.|-|-||+|||||.-++..+...+. .+.|| |..-++.++- --++.++.+.+... .....+.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYV--sGEES~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYV--SGEESLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEE--eCCcCHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999998876433 45554 4444444432 22566665443211 12235566777766
Q ss_pred CCcEEEEEeCC
Q 043094 251 EKRILVILDNI 261 (261)
Q Consensus 251 ~kr~LlVlDdv 261 (261)
.+.-|+|+|-+
T Consensus 167 ~~p~lvVIDSI 177 (456)
T COG1066 167 EKPDLVVIDSI 177 (456)
T ss_pred cCCCEEEEecc
Confidence 78899999964
No 450
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.07 E-value=0.045 Score=50.75 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
.-+++.|.|.+|+|||+|+.++....-.+ +=..++|++... +..++.+.+
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHH
Confidence 45799999999999999999876544321 124578887766 444555444
No 451
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.07 E-value=0.0057 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043094 176 LGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~ 196 (261)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 452
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0057 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999854
No 453
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.07 E-value=0.0056 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-..++|+|++|+|||||...+.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999984
No 454
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.06 E-value=0.0056 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999964
No 455
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.05 E-value=0.0067 Score=49.71 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987664
No 456
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.05 E-value=0.026 Score=49.64 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....|.|.|+.|+||||+.+.+.+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 457899999999999999999887553
No 457
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.05 E-value=0.013 Score=54.85 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+..+.|.+-.+.|.++.. .....+|.++|++|+||||+|+.++....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 344455555555555443 33456899999999999999999998765
No 458
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0055 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 459
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.04 E-value=0.017 Score=50.04 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=32.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
.+++.+.|.||+||||+|-...-.....+ ....-|++....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhc
Confidence 47899999999999999988655444322 3356666666555555543
No 460
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0063 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.. .+++|+|+.|+|||||++.+...
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999864
No 461
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.03 E-value=0.0073 Score=51.24 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCC
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNK 201 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~ 201 (261)
++|+|+|.+|+|||||+..+......+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999998887543
No 462
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.02 E-value=0.0064 Score=56.51 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.++..+|+|.|++|+||||||+.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4467899999999999999999998754
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.02 E-value=0.0057 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999854
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.02 E-value=0.0059 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 465
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.01 E-value=0.019 Score=54.66 Aligned_cols=25 Identities=44% Similarity=0.549 Sum_probs=22.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+-+.++|++|+|||++|+.+.+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999987765
No 466
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.0058 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||.+.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 467
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.01 E-value=0.0045 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..|.|+|++|+|||||+..+.++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 56899999999999999999976643
No 468
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.01 E-value=0.006 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999643
No 469
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0061 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 470
>PLN02924 thymidylate kinase
Probab=96.00 E-value=0.028 Score=46.13 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=34.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
...|+|-|..|+||||+++.+.+....+ .+....+=..+......+.++.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999988753 3444322112222334455555554
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.00 E-value=0.01 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-..+.|+|+.|+|||||++.+....
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999988654
No 472
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.006 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.+....
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998653
No 473
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.99 E-value=0.0063 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|..|+|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998753
No 474
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.99 E-value=0.13 Score=40.09 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 156 SRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 156 gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
|.+...+.|.+.+..+++ ..+.++|+.|+||+++|..+....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 455667777777776665 568999999999999999988754
No 475
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.99 E-value=0.0097 Score=46.71 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.3
Q ss_pred HHHHHhcCCCceEEEEEccCCCcHHHHHHHHHH
Q 043094 163 DILGALRNPDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+.+++.......|+++|.+|+|||||...+..
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc
Confidence 455555444456788999999999999999965
No 476
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.013 Score=50.02 Aligned_cols=28 Identities=36% Similarity=0.350 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.+..+.|||++|.|||-||+.|+....+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 4578899999999999999999987764
No 477
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.99 E-value=0.0099 Score=46.30 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
+...|+|+|++|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4566999999999999999999875
No 478
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.98 E-value=0.0092 Score=53.15 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCEEEEEEeCC---CCCHHHHHHHHHHHhC
Q 043094 157 RISTLNDILGALRNPDISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDLVVFSEMSQ---SPDIRKIQGEIADKLG 229 (261)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l~ 229 (261)
|.+..+.|..||.+..-..|.|.||-|+||+.|+ .++.++.+. +..+.|.+ ..+-..+++.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcC
Confidence 4567888999999877789999999999999999 777655432 55555433 2344566666666664
No 479
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.98 E-value=1.1 Score=40.16 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=41.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ--SPDIRKIQGEIADKLGLTFR 233 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~ 233 (261)
.+.+|-.+|.=|+||||.+-++++..+. ..+ .+-+.... .|...+=++.+..+++.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~--kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGK--KVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCC--ceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 4689999999999999999998887774 222 22232223 34445667888888876643
No 480
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.97 E-value=0.0072 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..+|+++|.+|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998754
No 481
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0062 Score=50.49 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999854
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.97 E-value=0.0087 Score=47.54 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....++.|.|.+|+||||+|+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999997764
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0058 Score=49.64 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
+++|+|+.|+|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999854
No 484
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.027 Score=53.05 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=42.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCCC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKEK 252 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 252 (261)
..-|.++|++|+|||.||..+......+ +++|-.+ +++. +.+|.. .+..+.+.++-..-|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~---KyIGaS------Eq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLS---KYIGAS------EQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHH---HHhccc------HHHHHHHHHHhhccC
Confidence 3468899999999999999998765532 3554332 2222 223322 233444555555568
Q ss_pred cEEEEEeC
Q 043094 253 RILVILDN 260 (261)
Q Consensus 253 r~LlVlDd 260 (261)
+|+|.+|+
T Consensus 761 PCiLFFDE 768 (952)
T KOG0735|consen 761 PCILFFDE 768 (952)
T ss_pred CeEEEecc
Confidence 88888886
No 485
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0065 Score=49.41 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 486
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.96 E-value=0.0067 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 487
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.96 E-value=0.0058 Score=49.71 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998643
No 488
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.96 E-value=0.0066 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999998754
No 489
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0079 Score=47.08 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.++||.|+||||+.+.+.....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 4588999999999999999987765
No 490
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.95 E-value=0.0066 Score=49.12 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998643
No 491
>PRK13768 GTPase; Provisional
Probab=95.94 E-value=0.0089 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++.|+|++|+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57899999999999999988876653
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.94 E-value=0.0067 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999854
No 493
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.94 E-value=0.0067 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34799999999999999999999653
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.94 E-value=0.0068 Score=49.31 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|..|+|||||++.+....
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998653
No 495
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.93 E-value=0.0067 Score=48.50 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 496
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.93 E-value=0.0061 Score=51.70 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
+.|+|+|-||+||||++..+......
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 46899999999999999888876553
No 497
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.028 Score=52.44 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++=|..+|+||+|||++|+.+.+....
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 35678899999999999999999998873
No 498
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0068 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 499
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.92 E-value=0.051 Score=48.73 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 159 STLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 159 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-..++.+.+..... ++.|.|+-++||||+++.+.....
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~ 62 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL 62 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC
Confidence 334455554443333 999999999999999977765544
No 500
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.92 E-value=0.038 Score=53.18 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=37.0
Q ss_pred cCCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++|+...+..+.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3468888888877766554 23345788999999999999999987653
Done!