Query 043094
Match_columns 261
No_of_seqs 222 out of 1729
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 2.8E-20 9.4E-25 171.3 11.8 106 155-261 131-252 (549)
2 1vt4_I APAF-1 related killer D 99.7 2.8E-16 9.7E-21 150.5 10.8 108 154-261 130-253 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.6 2.7E-16 9.2E-21 156.4 8.9 114 147-261 119-245 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.6 2.8E-15 9.5E-20 138.9 9.3 113 148-261 120-245 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 2.7E-14 9.1E-19 104.1 8.0 77 18-94 4-82 (115)
6 1w5s_A Origin recognition comp 99.2 1E-10 3.6E-15 103.1 13.3 111 151-261 21-147 (412)
7 2qby_B CDC6 homolog 3, cell di 99.1 3E-10 1E-14 99.3 11.3 110 151-261 19-142 (384)
8 2v1u_A Cell division control p 99.1 9E-10 3.1E-14 96.0 13.8 111 151-261 18-139 (387)
9 2qby_A CDC6 homolog 1, cell di 99.1 3.2E-10 1.1E-14 98.8 10.6 112 150-261 18-137 (386)
10 2qen_A Walker-type ATPase; unk 99.1 2.7E-10 9.1E-15 98.1 9.0 104 149-261 9-137 (350)
11 1fnn_A CDC6P, cell division co 99.1 5.2E-09 1.8E-13 91.4 16.0 110 151-261 16-134 (389)
12 3te6_A Regulatory protein SIR3 99.0 6.5E-09 2.2E-13 88.7 12.0 108 154-261 22-141 (318)
13 2fna_A Conserved hypothetical 98.9 7.4E-09 2.5E-13 89.1 11.0 70 149-227 10-84 (357)
14 2chg_A Replication factor C sm 98.9 2.3E-08 7.8E-13 79.9 11.3 74 148-221 13-86 (226)
15 1jbk_A CLPB protein; beta barr 98.8 5.1E-08 1.7E-12 76.0 10.4 50 149-198 19-68 (195)
16 1njg_A DNA polymerase III subu 98.7 1.1E-07 3.7E-12 76.9 10.6 53 147-199 18-71 (250)
17 2p65_A Hypothetical protein PF 98.6 1E-07 3.4E-12 74.2 8.1 50 149-198 19-68 (187)
18 1sxj_B Activator 1 37 kDa subu 98.5 2.3E-07 7.9E-12 78.7 8.5 52 147-198 16-67 (323)
19 1iqp_A RFCS; clamp loader, ext 98.4 3.2E-07 1.1E-11 78.0 5.9 52 147-198 20-71 (327)
20 3h4m_A Proteasome-activating n 98.3 2.3E-06 7.8E-11 71.5 9.1 50 149-198 14-76 (285)
21 3ec2_A DNA replication protein 98.3 2E-06 6.9E-11 66.9 7.7 41 158-198 20-63 (180)
22 2chq_A Replication factor C sm 98.2 1.4E-06 4.8E-11 73.7 6.5 51 147-197 12-62 (319)
23 1sxj_A Activator 1 95 kDa subu 98.2 3.8E-06 1.3E-10 76.5 9.3 66 147-217 34-116 (516)
24 3pvs_A Replication-associated 98.2 1.1E-05 3.8E-10 72.0 11.8 53 146-198 20-75 (447)
25 1hqc_A RUVB; extended AAA-ATPa 98.2 4.8E-06 1.6E-10 70.8 8.7 70 147-221 7-81 (324)
26 2w58_A DNAI, primosome compone 98.2 3.7E-06 1.3E-10 66.6 7.2 50 160-211 37-90 (202)
27 3b9p_A CG5977-PA, isoform A; A 98.2 2E-05 6.8E-10 66.2 11.9 50 149-198 18-79 (297)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.8E-05 6E-10 65.1 11.2 48 151-198 5-64 (262)
29 1jr3_A DNA polymerase III subu 98.1 1.4E-05 4.7E-10 69.2 10.4 52 147-198 11-63 (373)
30 3syl_A Protein CBBX; photosynt 98.1 6E-06 2.1E-10 69.7 7.8 47 153-199 32-93 (309)
31 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.7E-05 1.3E-09 65.6 12.7 48 150-197 10-69 (322)
32 3u61_B DNA polymerase accessor 98.1 2.1E-05 7.3E-10 66.9 10.4 52 147-198 21-73 (324)
33 1qvr_A CLPB protein; coiled co 98.1 1.6E-05 5.5E-10 76.6 10.6 49 149-197 167-215 (854)
34 3cf0_A Transitional endoplasmi 98.1 4.4E-05 1.5E-09 64.4 12.1 49 150-198 13-74 (301)
35 3pxg_A Negative regulator of g 98.1 1.3E-05 4.4E-10 72.0 9.2 50 149-198 177-226 (468)
36 1r6b_X CLPA protein; AAA+, N-t 98.1 3.3E-05 1.1E-09 73.5 12.3 50 149-198 183-232 (758)
37 3pfi_A Holliday junction ATP-d 98.0 2.2E-05 7.5E-10 67.2 10.0 52 147-198 24-80 (338)
38 3d8b_A Fidgetin-like protein 1 98.0 2.3E-05 7.9E-10 67.9 9.9 49 150-198 82-142 (357)
39 3eie_A Vacuolar protein sortin 98.0 1.5E-05 5.2E-10 67.9 8.5 50 149-198 15-76 (322)
40 3uk6_A RUVB-like 2; hexameric 98.0 2.3E-05 7.9E-10 67.8 9.4 48 151-198 43-95 (368)
41 3vfd_A Spastin; ATPase, microt 98.0 4E-05 1.4E-09 67.1 10.5 50 149-198 112-173 (389)
42 1sxj_C Activator 1 40 kDa subu 98.0 2.8E-05 9.4E-10 66.8 8.8 52 147-198 20-71 (340)
43 2zan_A Vacuolar protein sortin 97.9 5E-05 1.7E-09 67.7 10.5 49 149-197 131-191 (444)
44 1lv7_A FTSH; alpha/beta domain 97.9 6.2E-05 2.1E-09 61.8 10.0 50 149-198 9-70 (257)
45 1l8q_A Chromosomal replication 97.9 5.8E-05 2E-09 64.2 9.8 39 160-198 22-62 (324)
46 3pxi_A Negative regulator of g 97.9 3.7E-05 1.3E-09 73.2 9.2 48 150-197 178-225 (758)
47 2qp9_X Vacuolar protein sortin 97.9 5.3E-05 1.8E-09 65.6 9.3 49 150-198 49-109 (355)
48 1d2n_A N-ethylmaleimide-sensit 97.9 5.2E-05 1.8E-09 62.9 8.8 47 152-198 33-89 (272)
49 4fcw_A Chaperone protein CLPB; 97.9 4.9E-05 1.7E-09 64.1 8.7 59 153-213 18-85 (311)
50 1n0w_A DNA repair protein RAD5 97.9 0.00014 4.7E-09 58.9 11.1 88 173-261 24-128 (243)
51 4b4t_L 26S protease subunit RP 97.9 0.00012 4.1E-09 64.9 11.4 49 151-199 180-241 (437)
52 2z4s_A Chromosomal replication 97.8 6.2E-05 2.1E-09 67.1 9.5 48 151-198 104-155 (440)
53 4b4t_M 26S protease regulatory 97.8 8.7E-05 3E-09 65.7 10.3 50 150-199 179-241 (434)
54 4b4t_J 26S protease regulatory 97.8 0.00012 4.1E-09 64.1 10.6 49 151-199 147-208 (405)
55 3co5_A Putative two-component 97.8 5.8E-06 2E-10 62.0 1.5 44 153-196 5-50 (143)
56 4b4t_K 26S protease regulatory 97.8 0.00019 6.3E-09 63.5 11.4 48 151-198 171-231 (428)
57 3bos_A Putative DNA replicatio 97.8 4.8E-05 1.6E-09 61.3 7.0 62 150-213 26-90 (242)
58 1sxj_D Activator 1 41 kDa subu 97.8 2.1E-05 7.2E-10 67.5 4.9 51 147-197 32-82 (353)
59 3n70_A Transport activator; si 97.8 2.4E-05 8.2E-10 58.7 4.6 45 153-197 2-48 (145)
60 2vhj_A Ntpase P4, P4; non- hyd 97.7 3.2E-05 1.1E-09 65.6 5.6 66 174-261 124-191 (331)
61 3hu3_A Transitional endoplasmi 97.7 9.2E-05 3.2E-09 66.8 8.5 47 151-197 203-262 (489)
62 4b4t_H 26S protease regulatory 97.7 0.00025 8.4E-09 63.1 10.9 48 152-199 209-269 (467)
63 2cvh_A DNA repair and recombin 97.7 0.00017 6E-09 57.3 9.0 45 173-222 20-64 (220)
64 1v5w_A DMC1, meiotic recombina 97.7 0.00027 9.2E-09 60.8 10.6 89 172-261 121-228 (343)
65 2ce7_A Cell division protein F 97.7 0.00025 8.6E-09 63.6 10.3 49 150-198 14-74 (476)
66 3hr8_A Protein RECA; alpha and 97.6 0.00027 9.3E-09 61.0 10.1 82 173-261 61-148 (356)
67 2kjq_A DNAA-related protein; s 97.6 7.6E-05 2.6E-09 56.3 5.9 40 172-213 35-74 (149)
68 1sxj_E Activator 1 40 kDa subu 97.6 4.1E-05 1.4E-09 65.8 4.9 51 147-197 9-60 (354)
69 4b4t_I 26S protease regulatory 97.6 0.00029 9.8E-09 62.1 10.1 49 151-199 181-242 (437)
70 2z43_A DNA repair and recombin 97.6 0.00043 1.5E-08 59.0 10.8 88 173-261 107-212 (324)
71 3io5_A Recombination and repai 97.6 0.00045 1.6E-08 58.5 10.6 83 174-261 29-120 (333)
72 2i1q_A DNA repair and recombin 97.6 0.00027 9.1E-09 60.2 9.2 88 173-261 98-213 (322)
73 3t15_A Ribulose bisphosphate c 97.6 5.5E-05 1.9E-09 63.7 4.5 27 172-198 35-61 (293)
74 2qgz_A Helicase loader, putati 97.5 0.00011 3.6E-09 62.4 5.8 41 158-198 134-177 (308)
75 2x8a_A Nuclear valosin-contain 97.5 0.00069 2.3E-08 56.3 10.6 48 151-198 9-69 (274)
76 3lda_A DNA repair protein RAD5 97.5 0.00036 1.2E-08 61.2 8.6 88 173-261 178-282 (400)
77 2zr9_A Protein RECA, recombina 97.5 0.00053 1.8E-08 59.1 9.5 82 173-261 61-148 (349)
78 1in4_A RUVB, holliday junction 97.5 0.00016 5.6E-09 61.9 6.0 52 147-198 20-76 (334)
79 1xp8_A RECA protein, recombina 97.5 0.0007 2.4E-08 58.7 10.0 82 173-261 74-161 (366)
80 4a74_A DNA repair and recombin 97.4 0.00087 3E-08 53.6 9.5 56 173-229 25-84 (231)
81 2gno_A DNA polymerase III, gam 97.4 0.00083 2.8E-08 56.8 9.2 70 158-229 3-75 (305)
82 1ofh_A ATP-dependent HSL prote 97.3 0.00019 6.6E-09 60.1 5.2 47 152-198 15-75 (310)
83 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00062 2.1E-08 54.4 8.0 48 173-224 23-70 (235)
84 1u94_A RECA protein, recombina 97.3 0.00089 3E-08 57.9 9.3 82 173-261 63-150 (356)
85 1rz3_A Hypothetical protein rb 97.3 0.00026 9E-09 55.9 5.6 42 157-198 3-47 (201)
86 2bjv_A PSP operon transcriptio 97.3 0.00019 6.6E-09 59.1 4.4 48 151-198 5-54 (265)
87 2px0_A Flagellar biosynthesis 97.3 0.0021 7.1E-08 54.1 10.8 27 172-198 104-130 (296)
88 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0016 5.6E-08 58.7 10.6 50 149-198 28-89 (499)
89 3c8u_A Fructokinase; YP_612366 97.3 0.00034 1.2E-08 55.6 5.5 39 160-198 7-47 (208)
90 3ice_A Transcription terminati 97.2 0.00042 1.4E-08 60.3 6.0 52 163-215 163-216 (422)
91 1pzn_A RAD51, DNA repair and r 97.2 0.00088 3E-08 57.7 8.1 57 172-229 130-190 (349)
92 3lw7_A Adenylate kinase relate 97.2 0.00019 6.6E-09 54.7 3.2 20 174-193 2-21 (179)
93 3cf2_A TER ATPase, transitiona 97.2 0.00043 1.5E-08 65.8 6.0 27 172-198 237-263 (806)
94 3kb2_A SPBC2 prophage-derived 97.2 0.00026 8.8E-09 54.0 3.6 25 174-198 2-26 (173)
95 1ypw_A Transitional endoplasmi 97.2 0.00033 1.1E-08 67.0 5.0 48 151-198 203-263 (806)
96 1qhx_A CPT, protein (chloramph 97.2 0.00027 9.3E-09 54.4 3.7 25 174-198 4-28 (178)
97 3bh0_A DNAB-like replicative h 97.2 0.0042 1.4E-07 52.6 11.4 51 173-227 68-118 (315)
98 3pxi_A Negative regulator of g 97.2 0.00043 1.5E-08 65.8 5.8 60 152-213 491-559 (758)
99 2r62_A Cell division protease 97.1 0.00018 6.2E-09 59.3 2.8 49 150-198 9-69 (268)
100 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0008 2.7E-08 63.9 7.5 46 152-197 458-512 (758)
101 1ixz_A ATP-dependent metallopr 97.1 0.00077 2.6E-08 55.1 6.5 49 150-198 14-74 (254)
102 1sky_E F1-ATPase, F1-ATP synth 97.1 0.0016 5.3E-08 58.1 8.7 87 174-261 152-254 (473)
103 1zp6_A Hypothetical protein AT 97.1 0.0003 1E-08 54.8 3.7 25 172-196 8-32 (191)
104 1g8p_A Magnesium-chelatase 38 97.1 0.00028 9.4E-09 60.4 3.7 50 149-198 21-70 (350)
105 1ly1_A Polynucleotide kinase; 97.1 0.00033 1.1E-08 53.8 3.7 22 174-195 3-24 (181)
106 3vaa_A Shikimate kinase, SK; s 97.1 0.00034 1.2E-08 55.1 3.9 27 172-198 24-50 (199)
107 1kag_A SKI, shikimate kinase I 97.1 0.00027 9.2E-09 54.1 3.1 25 174-198 5-29 (173)
108 2c9o_A RUVB-like 1; hexameric 97.1 0.00084 2.9E-08 60.0 6.7 48 151-198 36-88 (456)
109 1a5t_A Delta prime, HOLB; zinc 97.1 0.0034 1.2E-07 53.6 10.2 41 158-198 8-49 (334)
110 1ojl_A Transcriptional regulat 97.1 0.0005 1.7E-08 58.1 4.8 46 153-198 3-50 (304)
111 4eun_A Thermoresistant glucoki 97.1 0.00041 1.4E-08 54.6 4.0 27 171-197 27-53 (200)
112 3uie_A Adenylyl-sulfate kinase 97.1 0.00042 1.4E-08 54.6 4.0 29 170-198 22-50 (200)
113 1iy2_A ATP-dependent metallopr 97.0 0.001 3.4E-08 55.2 6.4 49 150-198 38-98 (278)
114 3dm5_A SRP54, signal recogniti 97.0 0.0064 2.2E-07 53.9 11.8 28 172-199 99-126 (443)
115 1kgd_A CASK, peripheral plasma 97.0 0.00037 1.3E-08 54.0 3.5 24 174-197 6-29 (180)
116 3trf_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 53.7 3.7 26 173-198 5-30 (185)
117 3kl4_A SRP54, signal recogniti 97.0 0.0051 1.8E-07 54.4 10.9 28 172-199 96-123 (433)
118 2rhm_A Putative kinase; P-loop 97.0 0.00055 1.9E-08 53.2 4.2 26 173-198 5-30 (193)
119 2yvu_A Probable adenylyl-sulfa 97.0 0.00061 2.1E-08 52.9 4.3 29 171-199 11-39 (186)
120 1nks_A Adenylate kinase; therm 97.0 0.00049 1.7E-08 53.4 3.8 25 174-198 2-26 (194)
121 1qvr_A CLPB protein; coiled co 97.0 0.001 3.5E-08 64.1 6.6 46 153-198 559-613 (854)
122 3t61_A Gluconokinase; PSI-biol 97.0 0.00041 1.4E-08 54.7 3.3 26 173-198 18-43 (202)
123 3m6a_A ATP-dependent protease 97.0 0.0026 9E-08 58.1 9.0 46 153-198 82-133 (543)
124 1knq_A Gluconate kinase; ALFA/ 97.0 0.00067 2.3E-08 52.0 4.3 25 173-197 8-32 (175)
125 3tr0_A Guanylate kinase, GMP k 97.0 0.00048 1.6E-08 54.2 3.5 25 173-197 7-31 (205)
126 2dr3_A UPF0273 protein PH0284; 97.0 0.0042 1.4E-07 50.0 9.2 48 173-224 23-70 (247)
127 3iij_A Coilin-interacting nucl 96.9 0.0005 1.7E-08 53.0 3.5 26 173-198 11-36 (180)
128 2r44_A Uncharacterized protein 96.9 0.00054 1.8E-08 58.3 4.0 45 152-198 27-71 (331)
129 3hws_A ATP-dependent CLP prote 96.9 0.001 3.5E-08 57.4 5.8 45 154-198 17-76 (363)
130 1kht_A Adenylate kinase; phosp 96.9 0.00057 1.9E-08 53.0 3.8 25 174-198 4-28 (192)
131 2bdt_A BH3686; alpha-beta prot 96.9 0.00057 1.9E-08 53.2 3.7 22 174-195 3-24 (189)
132 3asz_A Uridine kinase; cytidin 96.9 0.00062 2.1E-08 53.9 3.8 27 172-198 5-31 (211)
133 2j41_A Guanylate kinase; GMP, 96.9 0.00066 2.2E-08 53.4 3.9 25 173-197 6-30 (207)
134 1ye8_A Protein THEP1, hypothet 96.9 0.00059 2E-08 53.0 3.5 24 175-198 2-25 (178)
135 2ze6_A Isopentenyl transferase 96.9 0.00066 2.3E-08 55.7 4.0 25 174-198 2-26 (253)
136 2jaq_A Deoxyguanosine kinase; 96.9 0.00066 2.2E-08 53.2 3.8 24 175-198 2-25 (205)
137 1uf9_A TT1252 protein; P-loop, 96.9 0.00069 2.4E-08 53.1 3.9 26 171-196 6-31 (203)
138 1tev_A UMP-CMP kinase; ploop, 96.9 0.0007 2.4E-08 52.6 3.9 26 173-198 3-28 (196)
139 1ukz_A Uridylate kinase; trans 96.9 0.0008 2.7E-08 52.9 4.3 26 172-197 14-39 (203)
140 2hf9_A Probable hydrogenase ni 96.9 0.001 3.5E-08 53.1 5.0 38 161-198 26-63 (226)
141 1via_A Shikimate kinase; struc 96.9 0.00056 1.9E-08 52.6 3.2 25 174-198 5-29 (175)
142 2c95_A Adenylate kinase 1; tra 96.9 0.00075 2.6E-08 52.6 4.0 27 172-198 8-34 (196)
143 1y63_A LMAJ004144AAA protein; 96.9 0.00076 2.6E-08 52.4 4.0 25 172-196 9-33 (184)
144 3tau_A Guanylate kinase, GMP k 96.9 0.0007 2.4E-08 53.7 3.9 26 172-197 7-32 (208)
145 4gp7_A Metallophosphoesterase; 96.9 0.00048 1.7E-08 52.9 2.8 23 172-194 8-30 (171)
146 1odf_A YGR205W, hypothetical 3 96.9 0.0012 4.2E-08 55.3 5.5 54 171-224 29-83 (290)
147 3a00_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 53.4 3.0 25 174-198 2-26 (186)
148 2ck3_D ATP synthase subunit be 96.9 0.0081 2.8E-07 53.5 10.8 97 164-261 143-262 (482)
149 2qor_A Guanylate kinase; phosp 96.9 0.00063 2.2E-08 53.7 3.5 26 172-197 11-36 (204)
150 1zuh_A Shikimate kinase; alpha 96.9 0.00073 2.5E-08 51.5 3.7 27 172-198 6-32 (168)
151 2xxa_A Signal recognition part 96.8 0.011 3.7E-07 52.4 11.6 28 172-199 99-126 (433)
152 1cke_A CK, MSSA, protein (cyti 96.8 0.00067 2.3E-08 54.3 3.5 24 174-197 6-29 (227)
153 2if2_A Dephospho-COA kinase; a 96.8 0.00067 2.3E-08 53.4 3.4 22 174-195 2-23 (204)
154 3tqc_A Pantothenate kinase; bi 96.8 0.0051 1.7E-07 52.3 9.0 27 172-198 91-117 (321)
155 3cmu_A Protein RECA, recombina 96.8 0.0035 1.2E-07 64.8 9.3 83 172-261 1426-1514(2050)
156 1um8_A ATP-dependent CLP prote 96.8 0.0015 5.3E-08 56.6 6.0 26 173-198 72-97 (376)
157 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0017 5.8E-08 55.8 6.0 40 159-198 6-49 (359)
158 3umf_A Adenylate kinase; rossm 96.8 0.00097 3.3E-08 53.5 4.3 28 171-198 27-54 (217)
159 1fx0_B ATP synthase beta chain 96.8 0.0043 1.5E-07 55.5 8.8 97 164-261 155-275 (498)
160 2plr_A DTMP kinase, probable t 96.8 0.00097 3.3E-08 52.6 4.2 27 173-199 4-30 (213)
161 1gvn_B Zeta; postsegregational 96.8 0.0015 5.2E-08 54.6 5.5 26 172-197 32-57 (287)
162 3cm0_A Adenylate kinase; ATP-b 96.8 0.00093 3.2E-08 51.7 4.0 25 173-197 4-28 (186)
163 1nn5_A Similar to deoxythymidy 96.8 0.0026 8.8E-08 50.2 6.6 32 173-205 9-40 (215)
164 2bbw_A Adenylate kinase 4, AK4 96.8 0.00076 2.6E-08 54.9 3.5 26 172-197 26-51 (246)
165 1vma_A Cell division protein F 96.8 0.0071 2.4E-07 51.0 9.6 28 172-199 103-130 (306)
166 2iyv_A Shikimate kinase, SK; t 96.8 0.00069 2.3E-08 52.4 3.1 25 174-198 3-27 (184)
167 2ffh_A Protein (FFH); SRP54, s 96.8 0.0057 2E-07 54.0 9.3 28 172-199 97-124 (425)
168 1lvg_A Guanylate kinase, GMP k 96.8 0.00069 2.4E-08 53.4 3.1 25 173-197 4-28 (198)
169 2cdn_A Adenylate kinase; phosp 96.8 0.0011 3.6E-08 52.2 4.1 27 172-198 19-45 (201)
170 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0009 3.1E-08 55.1 3.9 25 173-197 4-28 (260)
171 2bwj_A Adenylate kinase 5; pho 96.8 0.00089 3E-08 52.3 3.7 26 173-198 12-37 (199)
172 2wsm_A Hydrogenase expression/ 96.8 0.0012 4E-08 52.6 4.3 41 158-198 15-55 (221)
173 2vli_A Antibiotic resistance p 96.8 0.00065 2.2E-08 52.4 2.8 26 173-198 5-30 (183)
174 2j37_W Signal recognition part 96.8 0.018 6.2E-07 51.9 12.4 27 172-198 100-126 (504)
175 1qf9_A UMP/CMP kinase, protein 96.7 0.001 3.5E-08 51.5 3.8 26 173-198 6-31 (194)
176 1e6c_A Shikimate kinase; phosp 96.7 0.00083 2.8E-08 51.2 3.2 25 174-198 3-27 (173)
177 1aky_A Adenylate kinase; ATP:A 96.7 0.0011 3.7E-08 53.0 4.0 27 172-198 3-29 (220)
178 2qt1_A Nicotinamide riboside k 96.7 0.001 3.5E-08 52.6 3.8 25 172-196 20-44 (207)
179 3e70_C DPA, signal recognition 96.7 0.016 5.4E-07 49.4 11.4 29 171-199 127-155 (328)
180 1jjv_A Dephospho-COA kinase; P 96.7 0.00094 3.2E-08 52.7 3.5 22 174-195 3-24 (206)
181 1ex7_A Guanylate kinase; subst 96.7 0.0009 3.1E-08 52.3 3.2 24 174-197 2-25 (186)
182 1znw_A Guanylate kinase, GMP k 96.7 0.00092 3.1E-08 53.0 3.3 26 172-197 19-44 (207)
183 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 51.3 3.7 24 175-198 2-25 (195)
184 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 50.3 3.5 24 175-198 2-25 (168)
185 2jeo_A Uridine-cytidine kinase 96.7 0.0013 4.5E-08 53.5 4.0 26 172-197 24-49 (245)
186 3aez_A Pantothenate kinase; tr 96.7 0.0013 4.3E-08 55.8 4.0 28 171-198 88-115 (312)
187 2wwf_A Thymidilate kinase, put 96.7 0.0013 4.4E-08 52.0 3.8 32 173-205 10-41 (212)
188 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.1E-08 53.0 3.6 25 173-197 7-31 (227)
189 3tlx_A Adenylate kinase 2; str 96.6 0.003 1E-07 51.3 6.1 27 171-197 27-53 (243)
190 1zak_A Adenylate kinase; ATP:A 96.6 0.0012 4.2E-08 52.7 3.7 26 173-198 5-30 (222)
191 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0013 4.3E-08 59.5 4.0 44 153-198 23-66 (500)
192 1uj2_A Uridine-cytidine kinase 96.6 0.0014 4.6E-08 53.7 3.9 28 171-198 20-47 (252)
193 1z6g_A Guanylate kinase; struc 96.6 0.001 3.5E-08 53.2 3.1 26 172-197 22-47 (218)
194 3ney_A 55 kDa erythrocyte memb 96.6 0.0015 5E-08 51.6 3.8 26 172-197 18-43 (197)
195 3l0o_A Transcription terminati 96.6 0.01 3.5E-07 51.6 9.3 51 163-214 164-216 (427)
196 3fb4_A Adenylate kinase; psych 96.6 0.0014 4.9E-08 52.0 3.8 24 175-198 2-25 (216)
197 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.6E-08 50.0 4.0 27 172-198 3-29 (169)
198 2p5t_B PEZT; postsegregational 96.6 0.0019 6.4E-08 52.9 4.6 27 172-198 31-57 (253)
199 4e22_A Cytidylate kinase; P-lo 96.6 0.0015 5.1E-08 53.5 4.0 25 172-196 26-50 (252)
200 1htw_A HI0065; nucleotide-bind 96.6 0.0014 4.8E-08 49.8 3.5 27 171-197 31-57 (158)
201 1j8m_F SRP54, signal recogniti 96.6 0.017 5.7E-07 48.5 10.5 26 173-198 98-123 (297)
202 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.2E-08 51.2 3.7 25 173-197 4-28 (204)
203 2z0h_A DTMP kinase, thymidylat 96.6 0.0015 5.2E-08 50.8 3.7 24 175-198 2-25 (197)
204 2pez_A Bifunctional 3'-phospho 96.6 0.0017 5.8E-08 50.0 3.9 26 173-198 5-30 (179)
205 3dl0_A Adenylate kinase; phosp 96.6 0.0015 5.2E-08 51.8 3.7 23 175-197 2-24 (216)
206 2grj_A Dephospho-COA kinase; T 96.6 0.0017 5.8E-08 51.0 3.8 26 172-197 11-36 (192)
207 1rj9_A FTSY, signal recognitio 96.5 0.002 6.8E-08 54.4 4.4 27 172-198 101-127 (304)
208 2b8t_A Thymidine kinase; deoxy 96.5 0.0014 4.7E-08 52.8 3.1 28 172-199 11-38 (223)
209 1m7g_A Adenylylsulfate kinase; 96.5 0.0021 7.2E-08 50.9 4.2 28 171-198 23-50 (211)
210 1vht_A Dephospho-COA kinase; s 96.5 0.0019 6.7E-08 51.3 4.0 23 173-195 4-26 (218)
211 1gtv_A TMK, thymidylate kinase 96.5 0.00084 2.9E-08 53.1 1.8 24 175-198 2-25 (214)
212 2ehv_A Hypothetical protein PH 96.5 0.0015 5.1E-08 52.8 3.3 23 173-195 30-52 (251)
213 3fwy_A Light-independent proto 96.5 0.0017 5.8E-08 55.1 3.7 28 171-198 46-73 (314)
214 3k1j_A LON protease, ATP-depen 96.5 0.0019 6.4E-08 59.8 4.2 50 147-198 36-85 (604)
215 1s96_A Guanylate kinase, GMP k 96.5 0.0019 6.5E-08 51.8 3.7 27 172-198 15-41 (219)
216 3cf2_A TER ATPase, transitiona 96.5 0.0079 2.7E-07 57.2 8.4 48 151-198 476-536 (806)
217 4eaq_A DTMP kinase, thymidylat 96.5 0.0053 1.8E-07 49.5 6.3 32 172-205 25-56 (229)
218 1g41_A Heat shock protein HSLU 96.5 0.0021 7.2E-08 57.0 4.3 47 152-198 15-75 (444)
219 2i3b_A HCR-ntpase, human cance 96.5 0.0017 5.9E-08 50.8 3.3 25 174-198 2-26 (189)
220 2onk_A Molybdate/tungstate ABC 96.4 0.0019 6.3E-08 52.7 3.5 25 171-196 23-47 (240)
221 2f6r_A COA synthase, bifunctio 96.4 0.0021 7.1E-08 53.6 3.9 23 172-194 74-96 (281)
222 2zts_A Putative uncharacterize 96.4 0.0083 2.8E-07 48.3 7.3 49 173-224 30-78 (251)
223 1tue_A Replication protein E1; 96.4 0.0028 9.7E-08 50.2 4.2 38 161-198 45-83 (212)
224 3nwj_A ATSK2; P loop, shikimat 96.4 0.0017 5.8E-08 53.2 3.1 26 173-198 48-73 (250)
225 3sr0_A Adenylate kinase; phosp 96.4 0.0024 8.3E-08 50.7 3.8 24 175-198 2-25 (206)
226 3lnc_A Guanylate kinase, GMP k 96.4 0.0012 4.2E-08 53.1 2.1 25 173-197 27-52 (231)
227 1ls1_A Signal recognition part 96.4 0.015 5E-07 48.8 8.8 28 172-199 97-124 (295)
228 3tif_A Uncharacterized ABC tra 96.4 0.0019 6.5E-08 52.4 3.2 25 172-196 30-54 (235)
229 1sq5_A Pantothenate kinase; P- 96.4 0.0024 8.3E-08 53.9 3.9 28 171-198 78-105 (308)
230 1e4v_A Adenylate kinase; trans 96.4 0.0024 8.3E-08 50.7 3.7 23 175-197 2-24 (214)
231 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.8E-08 50.3 3.5 24 175-198 4-27 (208)
232 1ak2_A Adenylate kinase isoenz 96.3 0.0028 9.6E-08 51.1 4.0 26 173-198 16-41 (233)
233 3r20_A Cytidylate kinase; stru 96.3 0.0027 9.1E-08 51.5 3.9 26 173-198 9-34 (233)
234 3be4_A Adenylate kinase; malar 96.3 0.0025 8.6E-08 50.8 3.7 25 174-198 6-30 (217)
235 3b9q_A Chloroplast SRP recepto 96.3 0.0026 8.9E-08 53.6 3.9 27 172-198 99-125 (302)
236 2pcj_A ABC transporter, lipopr 96.3 0.0018 6.1E-08 52.2 2.7 24 173-196 30-53 (224)
237 2xb4_A Adenylate kinase; ATP-b 96.3 0.0026 8.9E-08 51.0 3.7 23 175-197 2-24 (223)
238 3b85_A Phosphate starvation-in 96.3 0.0018 6.2E-08 51.5 2.7 24 173-196 22-45 (208)
239 4a1f_A DNAB helicase, replicat 96.3 0.02 7E-07 48.9 9.3 50 173-226 46-95 (338)
240 2r6a_A DNAB helicase, replicat 96.3 0.02 7E-07 50.9 9.7 50 173-225 203-252 (454)
241 3cmw_A Protein RECA, recombina 96.2 0.013 4.3E-07 60.0 8.9 82 173-261 732-819 (1706)
242 3vr4_D V-type sodium ATPase su 96.2 0.0089 3E-07 53.0 6.9 98 164-261 141-257 (465)
243 2cbz_A Multidrug resistance-as 96.2 0.0021 7.3E-08 52.1 2.8 26 172-197 30-55 (237)
244 1b0u_A Histidine permease; ABC 96.2 0.0021 7.3E-08 53.0 2.8 25 172-196 31-55 (262)
245 2f1r_A Molybdopterin-guanine d 96.2 0.0014 4.9E-08 50.4 1.7 26 174-199 3-28 (171)
246 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0027 9.3E-08 51.9 3.3 24 173-196 29-52 (250)
247 3gmt_A Adenylate kinase; ssgci 96.2 0.02 6.8E-07 46.2 8.3 25 174-198 9-33 (230)
248 2q6t_A DNAB replication FORK h 96.2 0.028 9.6E-07 49.8 10.1 51 173-226 200-250 (444)
249 3gfo_A Cobalt import ATP-bindi 96.2 0.0026 8.8E-08 52.9 3.2 23 173-195 34-56 (275)
250 1np6_A Molybdopterin-guanine d 96.2 0.0036 1.2E-07 48.3 3.7 26 173-198 6-31 (174)
251 1g6h_A High-affinity branched- 96.2 0.0024 8.2E-08 52.5 2.8 24 173-196 33-56 (257)
252 2zu0_C Probable ATP-dependent 96.2 0.0029 9.9E-08 52.3 3.3 25 172-196 45-69 (267)
253 1ji0_A ABC transporter; ATP bi 96.2 0.0024 8.3E-08 51.9 2.8 24 173-196 32-55 (240)
254 1ltq_A Polynucleotide kinase; 96.2 0.0032 1.1E-07 52.6 3.7 23 174-196 3-25 (301)
255 2ck3_A ATP synthase subunit al 96.2 0.016 5.5E-07 52.0 8.2 98 164-261 152-271 (510)
256 3d3q_A TRNA delta(2)-isopenten 96.2 0.0035 1.2E-07 53.6 3.8 25 174-198 8-32 (340)
257 2pze_A Cystic fibrosis transme 96.2 0.0025 8.6E-08 51.4 2.8 25 173-197 34-58 (229)
258 4g1u_C Hemin import ATP-bindin 96.1 0.0029 9.8E-08 52.4 3.2 25 172-196 36-60 (266)
259 2olj_A Amino acid ABC transpor 96.1 0.0025 8.6E-08 52.6 2.8 25 172-196 49-73 (263)
260 1mv5_A LMRA, multidrug resista 96.1 0.0027 9.3E-08 51.7 3.0 25 172-196 27-51 (243)
261 3lv8_A DTMP kinase, thymidylat 96.1 0.011 3.9E-07 47.9 6.6 37 173-210 27-63 (236)
262 2eyu_A Twitching motility prot 96.1 0.0037 1.2E-07 51.6 3.7 27 171-197 23-49 (261)
263 1sgw_A Putative ABC transporte 96.1 0.0023 7.8E-08 51.2 2.4 24 173-196 35-58 (214)
264 3crm_A TRNA delta(2)-isopenten 96.1 0.0038 1.3E-07 53.0 3.8 24 174-197 6-29 (323)
265 2ff7_A Alpha-hemolysin translo 96.1 0.0027 9.2E-08 51.9 2.8 24 173-196 35-58 (247)
266 1cr0_A DNA primase/helicase; R 96.1 0.013 4.6E-07 48.8 7.2 39 172-211 34-72 (296)
267 2og2_A Putative signal recogni 96.1 0.0043 1.5E-07 53.6 4.1 27 172-198 156-182 (359)
268 3p32_A Probable GTPase RV1496/ 96.1 0.0085 2.9E-07 51.6 6.0 38 161-198 65-104 (355)
269 3cmu_A Protein RECA, recombina 96.1 0.019 6.5E-07 59.6 9.3 83 172-261 382-470 (2050)
270 1vpl_A ABC transporter, ATP-bi 96.1 0.0029 9.9E-08 52.0 2.8 25 172-196 40-64 (256)
271 1a7j_A Phosphoribulokinase; tr 96.1 0.0022 7.4E-08 53.8 2.1 26 172-197 4-29 (290)
272 2ghi_A Transport protein; mult 96.1 0.0029 1E-07 52.1 2.8 25 172-196 45-69 (260)
273 2ixe_A Antigen peptide transpo 96.1 0.003 1E-07 52.4 2.8 25 172-196 44-68 (271)
274 2c61_A A-type ATP synthase non 96.1 0.005 1.7E-07 54.8 4.4 98 164-261 142-258 (469)
275 1oix_A RAS-related protein RAB 96.0 0.004 1.4E-07 48.4 3.4 25 173-197 29-53 (191)
276 2qi9_C Vitamin B12 import ATP- 96.0 0.0032 1.1E-07 51.6 2.8 24 173-196 26-49 (249)
277 2yz2_A Putative ABC transporte 96.0 0.0032 1.1E-07 52.1 2.8 25 172-196 32-56 (266)
278 2ihy_A ABC transporter, ATP-bi 96.0 0.0032 1.1E-07 52.5 2.8 24 173-196 47-70 (279)
279 1q3t_A Cytidylate kinase; nucl 96.0 0.0049 1.7E-07 49.7 3.9 26 172-197 15-40 (236)
280 3bgw_A DNAB-like replicative h 96.0 0.026 8.9E-07 50.1 8.8 49 173-225 197-245 (444)
281 3upu_A ATP-dependent DNA helic 96.0 0.014 4.9E-07 51.9 7.2 42 157-199 30-71 (459)
282 3sop_A Neuronal-specific septi 96.0 0.004 1.4E-07 51.6 3.4 23 175-197 4-26 (270)
283 2nq2_C Hypothetical ABC transp 96.0 0.0034 1.1E-07 51.5 2.8 25 173-197 31-55 (253)
284 3gqb_B V-type ATP synthase bet 96.0 0.014 4.9E-07 51.6 6.9 98 164-261 137-260 (464)
285 4gzl_A RAS-related C3 botulinu 96.0 0.0049 1.7E-07 48.3 3.6 37 161-197 18-54 (204)
286 4tmk_A Protein (thymidylate ki 96.0 0.016 5.3E-07 46.2 6.6 52 174-226 4-55 (213)
287 2v9p_A Replication protein E1; 95.9 0.0046 1.6E-07 52.2 3.5 27 171-197 124-150 (305)
288 3cmw_A Protein RECA, recombina 95.9 0.021 7.1E-07 58.5 8.7 82 173-261 1431-1518(1706)
289 3ld9_A DTMP kinase, thymidylat 95.9 0.011 3.7E-07 47.5 5.5 57 170-226 18-74 (223)
290 2f9l_A RAB11B, member RAS onco 95.9 0.005 1.7E-07 48.0 3.5 24 173-196 5-28 (199)
291 3exa_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 51.8 3.9 25 173-197 3-27 (322)
292 3zvl_A Bifunctional polynucleo 95.9 0.0035 1.2E-07 55.3 2.8 28 170-197 255-282 (416)
293 4edh_A DTMP kinase, thymidylat 95.9 0.023 7.7E-07 45.3 7.3 32 173-205 6-37 (213)
294 3foz_A TRNA delta(2)-isopenten 95.9 0.0067 2.3E-07 51.1 4.3 26 172-197 9-34 (316)
295 1svm_A Large T antigen; AAA+ f 95.9 0.0053 1.8E-07 53.4 3.8 27 171-197 167-193 (377)
296 3vr4_A V-type sodium ATPase ca 95.9 0.034 1.2E-06 50.6 9.1 57 164-224 222-280 (600)
297 2dyk_A GTP-binding protein; GT 95.9 0.0062 2.1E-07 45.3 3.7 23 174-196 2-24 (161)
298 3a8t_A Adenylate isopentenyltr 95.9 0.0051 1.8E-07 52.5 3.5 26 172-197 39-64 (339)
299 2yhs_A FTSY, cell division pro 95.9 0.0063 2.1E-07 54.6 4.2 27 172-198 292-318 (503)
300 2ocp_A DGK, deoxyguanosine kin 95.9 0.0063 2.2E-07 49.2 4.0 25 173-197 2-26 (241)
301 2qe7_A ATP synthase subunit al 95.9 0.024 8.1E-07 50.8 7.8 94 164-261 152-263 (502)
302 1nlf_A Regulatory protein REPA 95.9 0.0047 1.6E-07 51.2 3.2 26 173-198 30-55 (279)
303 3fvq_A Fe(3+) IONS import ATP- 95.8 0.0047 1.6E-07 53.3 3.2 24 173-196 30-53 (359)
304 3mfy_A V-type ATP synthase alp 95.8 0.027 9.4E-07 51.0 8.2 57 164-224 217-275 (588)
305 1zu4_A FTSY; GTPase, signal re 95.8 0.0077 2.6E-07 51.2 4.4 27 172-198 104-130 (320)
306 2wji_A Ferrous iron transport 95.8 0.0067 2.3E-07 45.7 3.6 22 174-195 4-25 (165)
307 2pjz_A Hypothetical protein ST 95.8 0.0045 1.6E-07 51.1 2.8 24 173-196 30-53 (263)
308 1yrb_A ATP(GTP)binding protein 95.8 0.0098 3.4E-07 48.4 4.8 27 172-198 13-39 (262)
309 2vp4_A Deoxynucleoside kinase; 95.8 0.0043 1.5E-07 49.9 2.5 25 172-196 19-43 (230)
310 1g8f_A Sulfate adenylyltransfe 95.8 0.013 4.4E-07 52.9 5.9 47 153-199 373-421 (511)
311 2r9v_A ATP synthase subunit al 95.7 0.011 3.7E-07 53.1 5.2 94 164-261 165-276 (515)
312 3hjn_A DTMP kinase, thymidylat 95.7 0.024 8.1E-07 44.5 6.7 50 175-226 2-51 (197)
313 1z47_A CYSA, putative ABC-tran 95.7 0.0059 2E-07 52.6 3.3 24 173-196 41-64 (355)
314 3tui_C Methionine import ATP-b 95.7 0.0059 2E-07 52.7 3.3 25 172-196 53-77 (366)
315 1moz_A ARL1, ADP-ribosylation 95.7 0.0078 2.7E-07 45.9 3.7 32 164-195 8-40 (183)
316 1q57_A DNA primase/helicase; d 95.7 0.062 2.1E-06 48.3 10.2 51 173-226 242-292 (503)
317 3rlf_A Maltose/maltodextrin im 95.7 0.0063 2.1E-07 52.9 3.3 24 173-196 29-52 (381)
318 2bbs_A Cystic fibrosis transme 95.7 0.0052 1.8E-07 51.5 2.7 26 172-197 63-88 (290)
319 2yyz_A Sugar ABC transporter, 95.7 0.0064 2.2E-07 52.5 3.3 25 172-196 28-52 (359)
320 2zej_A Dardarin, leucine-rich 95.6 0.0061 2.1E-07 46.9 2.9 21 175-195 4-24 (184)
321 2it1_A 362AA long hypothetical 95.6 0.0065 2.2E-07 52.5 3.3 25 172-196 28-52 (362)
322 1nij_A Hypothetical protein YJ 95.6 0.0064 2.2E-07 51.5 3.3 26 172-197 3-28 (318)
323 1u0j_A DNA replication protein 95.6 0.015 5.1E-07 48.0 5.3 36 161-196 90-127 (267)
324 2ce2_X GTPase HRAS; signaling 95.6 0.0072 2.5E-07 44.9 3.2 23 175-197 5-27 (166)
325 3nh6_A ATP-binding cassette SU 95.6 0.0043 1.5E-07 52.4 2.1 24 172-195 79-102 (306)
326 3kta_A Chromosome segregation 95.6 0.0073 2.5E-07 46.4 3.2 22 174-195 27-48 (182)
327 2wjg_A FEOB, ferrous iron tran 95.6 0.0074 2.5E-07 46.3 3.3 24 173-196 7-30 (188)
328 1g29_1 MALK, maltose transport 95.6 0.0069 2.3E-07 52.6 3.3 24 173-196 29-52 (372)
329 1zj6_A ADP-ribosylation factor 95.6 0.014 4.6E-07 44.9 4.7 33 163-196 7-39 (187)
330 1v43_A Sugar-binding transport 95.6 0.007 2.4E-07 52.5 3.3 25 172-196 36-60 (372)
331 2h92_A Cytidylate kinase; ross 95.6 0.0072 2.5E-07 47.9 3.1 24 174-197 4-27 (219)
332 2ged_A SR-beta, signal recogni 95.6 0.0099 3.4E-07 45.8 3.9 26 172-197 47-72 (193)
333 1fzq_A ADP-ribosylation factor 95.6 0.012 4E-07 45.1 4.3 26 171-196 14-39 (181)
334 1z2a_A RAS-related protein RAB 95.5 0.01 3.5E-07 44.3 3.8 25 173-197 5-29 (168)
335 1lw7_A Transcriptional regulat 95.5 0.0072 2.5E-07 52.2 3.3 26 173-198 170-195 (365)
336 3f9v_A Minichromosome maintena 95.5 0.0045 1.5E-07 57.1 2.1 23 175-197 329-351 (595)
337 3end_A Light-independent proto 95.5 0.0089 3E-07 50.2 3.7 30 170-199 38-67 (307)
338 1nrj_B SR-beta, signal recogni 95.5 0.01 3.5E-07 46.8 3.9 27 171-197 10-36 (218)
339 3jvv_A Twitching mobility prot 95.5 0.01 3.6E-07 51.1 4.1 26 172-197 122-147 (356)
340 1tq4_A IIGP1, interferon-induc 95.5 0.01 3.5E-07 52.2 4.0 24 172-195 68-91 (413)
341 3d31_A Sulfate/molybdate ABC t 95.4 0.0058 2E-07 52.5 2.3 24 173-196 26-49 (348)
342 1f6b_A SAR1; gtpases, N-termin 95.4 0.015 5E-07 45.4 4.5 32 164-195 15-47 (198)
343 1u8z_A RAS-related protein RAL 95.4 0.013 4.6E-07 43.5 4.1 25 173-197 4-28 (168)
344 1c1y_A RAS-related protein RAP 95.4 0.0096 3.3E-07 44.4 3.3 24 174-197 4-27 (167)
345 3con_A GTPase NRAS; structural 95.4 0.0094 3.2E-07 45.8 3.3 24 174-197 22-45 (190)
346 1r8s_A ADP-ribosylation factor 95.4 0.01 3.6E-07 44.2 3.5 23 175-197 2-24 (164)
347 1p9r_A General secretion pathw 95.4 0.016 5.4E-07 51.1 5.1 35 163-198 158-192 (418)
348 2qm8_A GTPase/ATPase; G protei 95.4 0.011 3.6E-07 50.7 3.9 28 170-197 52-79 (337)
349 2lkc_A Translation initiation 95.4 0.011 3.6E-07 44.8 3.5 26 171-196 6-31 (178)
350 1kao_A RAP2A; GTP-binding prot 95.4 0.0098 3.3E-07 44.3 3.3 24 174-197 4-27 (167)
351 2nzj_A GTP-binding protein REM 95.4 0.012 4.1E-07 44.3 3.8 24 173-196 4-27 (175)
352 3cr8_A Sulfate adenylyltranfer 95.4 0.015 5E-07 53.2 4.9 27 172-198 368-394 (552)
353 1tf7_A KAIC; homohexamer, hexa 95.4 0.033 1.1E-06 50.5 7.2 26 173-198 281-306 (525)
354 2ewv_A Twitching motility prot 95.4 0.01 3.4E-07 51.5 3.6 27 171-197 134-160 (372)
355 3eph_A TRNA isopentenyltransfe 95.4 0.011 3.7E-07 51.7 3.8 24 174-197 3-26 (409)
356 2www_A Methylmalonic aciduria 95.4 0.012 4E-07 50.6 4.0 26 172-197 73-98 (349)
357 2v3c_C SRP54, signal recogniti 95.4 0.0073 2.5E-07 53.5 2.7 27 172-198 98-124 (432)
358 3t1o_A Gliding protein MGLA; G 95.4 0.01 3.4E-07 45.7 3.3 24 173-196 14-37 (198)
359 3oaa_A ATP synthase subunit al 95.4 0.12 4.2E-06 46.2 10.5 94 164-261 152-263 (513)
360 1z08_A RAS-related protein RAB 95.4 0.01 3.5E-07 44.4 3.3 25 173-197 6-30 (170)
361 1ek0_A Protein (GTP-binding pr 95.4 0.01 3.6E-07 44.3 3.3 24 174-197 4-27 (170)
362 3v9p_A DTMP kinase, thymidylat 95.3 0.024 8.3E-07 45.6 5.6 27 173-199 25-51 (227)
363 3gd7_A Fusion complex of cysti 95.3 0.0092 3.1E-07 52.1 3.2 24 172-195 46-69 (390)
364 2axn_A 6-phosphofructo-2-kinas 95.3 0.013 4.4E-07 53.2 4.3 28 171-198 33-60 (520)
365 1z0j_A RAB-22, RAS-related pro 95.3 0.011 3.7E-07 44.3 3.3 24 174-197 7-30 (170)
366 3q85_A GTP-binding protein REM 95.3 0.012 4.3E-07 44.0 3.6 21 174-194 3-23 (169)
367 1svi_A GTP-binding protein YSX 95.3 0.011 3.7E-07 45.6 3.3 25 172-196 22-46 (195)
368 2fn4_A P23, RAS-related protei 95.3 0.014 4.8E-07 44.2 3.9 26 172-197 8-33 (181)
369 1oxx_K GLCV, glucose, ABC tran 95.3 0.0053 1.8E-07 52.9 1.6 25 172-196 30-54 (353)
370 1ky3_A GTP-binding protein YPT 95.3 0.014 4.6E-07 44.3 3.8 26 172-197 7-32 (182)
371 2yv5_A YJEQ protein; hydrolase 95.3 0.019 6.5E-07 48.2 4.9 33 161-197 156-188 (302)
372 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.011 3.9E-07 44.6 3.3 25 173-197 7-31 (177)
373 1p5z_B DCK, deoxycytidine kina 95.3 0.0054 1.9E-07 50.3 1.5 26 172-197 23-48 (263)
374 2orw_A Thymidine kinase; TMTK, 95.3 0.014 4.8E-07 45.3 3.8 25 174-198 4-28 (184)
375 2erx_A GTP-binding protein DI- 95.3 0.0094 3.2E-07 44.7 2.8 23 174-196 4-26 (172)
376 4akg_A Glutathione S-transfera 95.3 0.043 1.5E-06 58.7 8.4 51 174-228 1268-1318(2695)
377 2obl_A ESCN; ATPase, hydrolase 95.3 0.011 3.7E-07 50.8 3.4 27 172-198 70-96 (347)
378 1m7b_A RND3/RHOE small GTP-bin 95.3 0.011 3.8E-07 45.3 3.2 25 173-197 7-31 (184)
379 3q72_A GTP-binding protein RAD 95.2 0.01 3.4E-07 44.4 2.8 22 174-195 3-24 (166)
380 2b6h_A ADP-ribosylation factor 95.2 0.011 3.7E-07 45.9 3.0 28 168-195 24-51 (192)
381 1r2q_A RAS-related protein RAB 95.2 0.012 4.2E-07 43.9 3.3 23 174-196 7-29 (170)
382 2gza_A Type IV secretion syste 95.2 0.0091 3.1E-07 51.6 2.8 24 173-196 175-198 (361)
383 1upt_A ARL1, ADP-ribosylation 95.2 0.016 5.6E-07 43.4 3.9 25 173-197 7-31 (171)
384 3pqc_A Probable GTP-binding pr 95.2 0.013 4.3E-07 45.0 3.4 26 172-197 22-47 (195)
385 2gj8_A MNME, tRNA modification 95.2 0.014 4.7E-07 44.4 3.5 23 174-196 5-27 (172)
386 3fdi_A Uncharacterized protein 95.2 0.014 4.8E-07 46.0 3.6 25 174-198 7-31 (201)
387 3ihw_A Centg3; RAS, centaurin, 95.2 0.012 4.3E-07 45.2 3.3 26 172-197 19-44 (184)
388 2qnr_A Septin-2, protein NEDD5 95.2 0.0096 3.3E-07 50.0 2.8 21 175-195 20-40 (301)
389 1z0f_A RAB14, member RAS oncog 95.1 0.013 4.5E-07 44.2 3.3 25 173-197 15-39 (179)
390 1m8p_A Sulfate adenylyltransfe 95.1 0.029 9.9E-07 51.5 6.1 29 170-198 393-421 (573)
391 4dsu_A GTPase KRAS, isoform 2B 95.1 0.013 4.5E-07 44.7 3.3 24 174-197 5-28 (189)
392 1g16_A RAS-related protein SEC 95.1 0.016 5.5E-07 43.3 3.7 24 174-197 4-27 (170)
393 1pui_A ENGB, probable GTP-bind 95.1 0.0079 2.7E-07 47.1 2.0 25 171-195 24-48 (210)
394 1fx0_A ATP synthase alpha chai 95.1 0.012 4.2E-07 52.7 3.4 86 172-261 162-264 (507)
395 3gqb_A V-type ATP synthase alp 95.1 0.031 1E-06 50.6 5.9 56 164-223 211-268 (578)
396 1m2o_B GTP-binding protein SAR 95.1 0.015 5E-07 45.0 3.4 25 172-196 22-46 (190)
397 3bc1_A RAS-related protein RAB 95.1 0.014 4.8E-07 44.7 3.3 25 173-197 11-35 (195)
398 3c5c_A RAS-like protein 12; GD 95.1 0.014 4.9E-07 44.9 3.3 26 172-197 20-45 (187)
399 1bif_A 6-phosphofructo-2-kinas 95.0 0.016 5.6E-07 51.8 4.1 27 172-198 38-64 (469)
400 1cp2_A CP2, nitrogenase iron p 95.0 0.019 6.6E-07 46.9 4.2 26 174-199 2-27 (269)
401 2oil_A CATX-8, RAS-related pro 95.0 0.014 4.9E-07 44.9 3.3 25 173-197 25-49 (193)
402 2bme_A RAB4A, RAS-related prot 95.0 0.014 4.8E-07 44.5 3.2 25 173-197 10-34 (186)
403 2atv_A RERG, RAS-like estrogen 95.0 0.018 6.3E-07 44.5 3.9 27 171-197 26-52 (196)
404 2npi_A Protein CLP1; CLP1-PCF1 95.0 0.012 4E-07 52.6 3.0 26 172-197 137-162 (460)
405 2qmh_A HPR kinase/phosphorylas 95.0 0.015 5E-07 45.9 3.2 25 173-197 34-58 (205)
406 3dz8_A RAS-related protein RAB 95.0 0.015 5.2E-07 44.8 3.4 25 173-197 23-47 (191)
407 3kkq_A RAS-related protein M-R 95.0 0.021 7.2E-07 43.4 4.1 26 172-197 17-42 (183)
408 3tw8_B RAS-related protein RAB 95.0 0.013 4.5E-07 44.3 2.9 25 172-196 8-32 (181)
409 2a9k_A RAS-related protein RAL 95.0 0.015 5.2E-07 44.2 3.3 25 173-197 18-42 (187)
410 2y8e_A RAB-protein 6, GH09086P 95.0 0.015 5.1E-07 43.9 3.2 24 174-197 15-38 (179)
411 1mh1_A RAC1; GTP-binding, GTPa 95.0 0.015 5.3E-07 44.2 3.3 24 174-197 6-29 (186)
412 1ksh_A ARF-like protein 2; sma 95.0 0.017 5.8E-07 44.1 3.5 27 171-197 16-42 (186)
413 1u0l_A Probable GTPase ENGC; p 95.0 0.024 8.2E-07 47.5 4.7 33 161-196 160-192 (301)
414 2p67_A LAO/AO transport system 95.0 0.016 5.6E-07 49.5 3.7 29 170-198 53-81 (341)
415 2efe_B Small GTP-binding prote 95.0 0.016 5.4E-07 43.9 3.3 25 173-197 12-36 (181)
416 3bwd_D RAC-like GTP-binding pr 94.9 0.016 5.5E-07 44.0 3.3 25 172-196 7-31 (182)
417 2bov_A RAla, RAS-related prote 94.9 0.022 7.4E-07 44.2 4.1 26 172-197 13-38 (206)
418 3ch4_B Pmkase, phosphomevalona 94.9 0.022 7.7E-07 44.8 4.1 26 172-197 10-35 (202)
419 2afh_E Nitrogenase iron protei 94.9 0.017 5.8E-07 48.0 3.6 26 173-198 2-27 (289)
420 2g6b_A RAS-related protein RAB 94.9 0.016 5.6E-07 43.8 3.3 25 173-197 10-34 (180)
421 2hxs_A RAB-26, RAS-related pro 94.9 0.018 6.2E-07 43.5 3.5 24 173-196 6-29 (178)
422 3t5g_A GTP-binding protein RHE 94.9 0.016 5.4E-07 44.1 3.2 25 173-197 6-30 (181)
423 2cxx_A Probable GTP-binding pr 94.9 0.015 5E-07 44.5 3.0 22 175-196 3-24 (190)
424 2iwr_A Centaurin gamma 1; ANK 94.9 0.012 4.1E-07 44.6 2.4 24 173-196 7-30 (178)
425 3geh_A MNME, tRNA modification 94.9 0.15 5E-06 45.5 9.7 88 65-197 161-248 (462)
426 2fg5_A RAB-22B, RAS-related pr 94.8 0.017 5.8E-07 44.6 3.2 25 173-197 23-47 (192)
427 3oes_A GTPase rhebl1; small GT 94.8 0.017 5.8E-07 44.9 3.2 26 172-197 23-48 (201)
428 2cjw_A GTP-binding protein GEM 94.8 0.019 6.5E-07 44.5 3.5 23 173-195 6-28 (192)
429 2qag_B Septin-6, protein NEDD5 94.8 0.014 4.7E-07 51.5 2.9 22 174-195 43-64 (427)
430 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.01 3.5E-07 50.6 2.0 24 174-197 172-195 (330)
431 1ega_A Protein (GTP-binding pr 94.8 0.018 6.1E-07 48.4 3.4 25 172-196 7-31 (301)
432 3tkl_A RAS-related protein RAB 94.8 0.018 6.2E-07 44.3 3.3 25 173-197 16-40 (196)
433 1zd9_A ADP-ribosylation factor 94.8 0.018 6.3E-07 44.2 3.3 25 173-197 22-46 (188)
434 4hlc_A DTMP kinase, thymidylat 94.8 0.042 1.4E-06 43.4 5.4 25 174-198 3-27 (205)
435 3clv_A RAB5 protein, putative; 94.8 0.025 8.7E-07 43.5 4.1 25 173-197 7-31 (208)
436 2fh5_B SR-beta, signal recogni 94.8 0.02 6.7E-07 45.0 3.5 26 172-197 6-31 (214)
437 2dpy_A FLII, flagellum-specifi 94.8 0.017 5.8E-07 51.2 3.4 28 171-198 155-182 (438)
438 1vg8_A RAS-related protein RAB 94.8 0.022 7.7E-07 44.2 3.8 26 172-197 7-32 (207)
439 3cbq_A GTP-binding protein REM 94.8 0.016 5.5E-07 45.0 2.9 23 172-194 22-44 (195)
440 1gwn_A RHO-related GTP-binding 94.8 0.018 6.1E-07 45.3 3.2 26 172-197 27-52 (205)
441 3reg_A RHO-like small GTPase; 94.8 0.019 6.4E-07 44.3 3.3 26 172-197 22-47 (194)
442 2ew1_A RAS-related protein RAB 94.8 0.018 6.1E-07 45.1 3.2 25 173-197 26-50 (201)
443 2gks_A Bifunctional SAT/APS ki 94.8 0.044 1.5E-06 49.9 6.2 44 155-198 352-397 (546)
444 2r8r_A Sensor protein; KDPD, P 94.7 0.025 8.4E-07 45.5 3.9 26 174-199 7-32 (228)
445 2gf9_A RAS-related protein RAB 94.7 0.019 6.7E-07 44.0 3.3 25 173-197 22-46 (189)
446 4b3f_X DNA-binding protein smu 94.7 0.058 2E-06 50.2 7.0 63 158-226 192-255 (646)
447 2a5j_A RAS-related protein RAB 94.7 0.02 6.7E-07 44.1 3.3 25 173-197 21-45 (191)
448 2gf0_A GTP-binding protein DI- 94.7 0.027 9.2E-07 43.4 4.1 25 172-196 7-31 (199)
449 3lxx_A GTPase IMAP family memb 94.7 0.021 7.3E-07 45.9 3.6 26 172-197 28-53 (239)
450 3k53_A Ferrous iron transport 94.7 0.021 7E-07 47.0 3.6 24 173-196 3-26 (271)
451 2qu8_A Putative nucleolar GTP- 94.7 0.024 8.1E-07 45.2 3.8 26 171-196 27-52 (228)
452 1x3s_A RAS-related protein RAB 94.7 0.021 7E-07 43.9 3.3 24 174-197 16-39 (195)
453 4bas_A ADP-ribosylation factor 94.7 0.022 7.5E-07 43.9 3.4 25 172-196 16-40 (199)
454 2rcn_A Probable GTPase ENGC; Y 94.7 0.019 6.6E-07 49.4 3.3 24 174-197 216-239 (358)
455 1yqt_A RNAse L inhibitor; ATP- 94.7 0.018 6.2E-07 52.4 3.3 25 173-197 312-336 (538)
456 3euj_A Chromosome partition pr 94.7 0.019 6.4E-07 51.5 3.3 25 174-198 30-54 (483)
457 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.024 8.3E-07 42.3 3.5 23 173-195 23-45 (149)
458 1z06_A RAS-related protein RAB 94.6 0.026 8.8E-07 43.3 3.8 26 172-197 19-44 (189)
459 1yqt_A RNAse L inhibitor; ATP- 94.6 0.019 6.4E-07 52.4 3.3 24 173-196 47-70 (538)
460 2p5s_A RAS and EF-hand domain 94.6 0.026 8.7E-07 43.8 3.7 26 171-196 26-51 (199)
461 1zbd_A Rabphilin-3A; G protein 94.6 0.017 6E-07 44.8 2.8 25 173-197 8-32 (203)
462 1x6v_B Bifunctional 3'-phospho 94.6 0.027 9.1E-07 52.1 4.3 26 172-197 51-76 (630)
463 1ypw_A Transitional endoplasmi 94.6 0.012 4.2E-07 56.2 2.2 48 151-198 476-536 (806)
464 3iev_A GTP-binding protein ERA 94.6 0.022 7.4E-07 48.0 3.4 25 172-196 9-33 (308)
465 3tmk_A Thymidylate kinase; pho 94.6 0.026 8.9E-07 45.0 3.7 27 173-199 5-31 (216)
466 2bcg_Y Protein YP2, GTP-bindin 94.6 0.022 7.4E-07 44.4 3.2 25 173-197 8-32 (206)
467 2fz4_A DNA repair protein RAD2 94.5 0.099 3.4E-06 42.1 7.2 41 154-197 92-132 (237)
468 3llu_A RAS-related GTP-binding 94.5 0.019 6.5E-07 44.5 2.8 24 172-195 19-42 (196)
469 3ozx_A RNAse L inhibitor; ATP 94.5 0.017 5.8E-07 52.6 2.8 25 173-197 294-318 (538)
470 2q3h_A RAS homolog gene family 94.5 0.017 5.9E-07 44.8 2.5 26 172-197 19-44 (201)
471 3cph_A RAS-related protein SEC 94.5 0.024 8.2E-07 44.3 3.3 25 173-197 20-44 (213)
472 2o52_A RAS-related protein RAB 94.5 0.017 5.9E-07 44.9 2.4 25 172-196 24-48 (200)
473 2fv8_A H6, RHO-related GTP-bin 94.5 0.023 7.9E-07 44.4 3.2 24 173-196 25-48 (207)
474 3ozx_A RNAse L inhibitor; ATP 94.4 0.019 6.6E-07 52.2 3.0 25 172-196 24-48 (538)
475 2fu5_C RAS-related protein RAB 94.4 0.013 4.4E-07 44.7 1.6 24 173-196 8-31 (183)
476 2atx_A Small GTP binding prote 94.4 0.024 8.3E-07 43.6 3.2 25 173-197 18-42 (194)
477 3kjh_A CO dehydrogenase/acetyl 94.4 0.051 1.8E-06 43.5 5.3 42 175-218 2-43 (254)
478 3hdt_A Putative kinase; struct 94.4 0.03 1E-06 44.9 3.7 26 173-198 14-39 (223)
479 3io3_A DEHA2D07832P; chaperone 94.4 0.029 1E-06 48.1 3.9 31 168-198 13-43 (348)
480 3bk7_A ABC transporter ATP-bin 94.4 0.023 7.9E-07 52.5 3.3 25 173-197 382-406 (607)
481 2j0v_A RAC-like GTP-binding pr 94.4 0.025 8.7E-07 44.2 3.2 26 172-197 8-33 (212)
482 2hup_A RAS-related protein RAB 94.4 0.026 8.8E-07 44.0 3.2 25 172-196 28-52 (201)
483 2gco_A H9, RHO-related GTP-bin 94.3 0.026 8.8E-07 43.9 3.2 25 173-197 25-49 (201)
484 2xtp_A GTPase IMAP family memb 94.3 0.029 1E-06 45.6 3.6 26 172-197 21-46 (260)
485 3j16_B RLI1P; ribosome recycli 94.3 0.024 8.4E-07 52.3 3.3 24 174-197 379-402 (608)
486 3iqw_A Tail-anchored protein t 94.3 0.08 2.7E-06 45.1 6.3 31 168-198 11-41 (334)
487 2h17_A ADP-ribosylation factor 94.3 0.021 7.1E-07 43.6 2.4 24 173-196 21-44 (181)
488 3q3j_B RHO-related GTP-binding 94.3 0.028 9.7E-07 44.3 3.3 25 173-197 27-51 (214)
489 2j1l_A RHO-related GTP-binding 94.3 0.026 8.7E-07 44.5 3.0 25 172-196 33-57 (214)
490 3def_A T7I23.11 protein; chlor 94.2 0.061 2.1E-06 43.9 5.4 26 172-197 35-60 (262)
491 3j16_B RLI1P; ribosome recycli 94.2 0.025 8.7E-07 52.2 3.3 25 172-196 102-126 (608)
492 2g3y_A GTP-binding protein GEM 94.2 0.027 9.3E-07 44.6 3.1 23 172-194 36-58 (211)
493 2il1_A RAB12; G-protein, GDP, 94.2 0.026 8.9E-07 43.5 2.9 25 173-197 26-50 (192)
494 1h65_A Chloroplast outer envel 94.2 0.062 2.1E-06 44.1 5.4 26 172-197 38-63 (270)
495 2x77_A ADP-ribosylation factor 94.2 0.037 1.3E-06 42.4 3.7 25 171-195 20-44 (189)
496 2qag_C Septin-7; cell cycle, c 94.2 0.022 7.4E-07 50.2 2.6 21 176-196 34-54 (418)
497 3b5x_A Lipid A export ATP-bind 94.1 0.029 9.9E-07 51.6 3.5 25 172-196 368-392 (582)
498 2aka_B Dynamin-1; fusion prote 94.0 0.061 2.1E-06 44.5 5.0 26 172-197 25-50 (299)
499 3b60_A Lipid A export ATP-bind 94.0 0.03 1E-06 51.4 3.4 25 172-196 368-392 (582)
500 2f7s_A C25KG, RAS-related prot 94.0 0.033 1.1E-06 43.7 3.1 24 173-196 25-48 (217)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.82 E-value=2.8e-20 Score=171.33 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=89.3
Q ss_pred cccHHHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHH--HhccCCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 043094 155 ESRISTLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVAR--KAKNNKLFDLVVFSEMSQSP--DIRKIQGEIADK 227 (261)
Q Consensus 155 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 227 (261)
+||+.++++|.++|.. ...++|+|+||||+||||||+.+|+ +.+++.+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999973 3689999999999999999999999 57788899999999999985 899999999999
Q ss_pred hCCCCC---CC-----CchHHHHHHHHHHhCCC-cEEEEEeCC
Q 043094 228 LGLTFR---EE-----SGSGRARSLFSRLKKEK-RILVILDNI 261 (261)
Q Consensus 228 l~~~~~---~~-----~~~~~~~~l~~~l~~~k-r~LlVlDdv 261 (261)
++.... .. +.......+.+.|. ++ |||||||||
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv 252 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDV 252 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECC
Confidence 986522 11 12234678888997 55 999999996
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.66 E-value=2.8e-16 Score=150.54 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCC-
Q 043094 154 FESRISTLNDILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL-VVFSEMSQSPDIRKIQGEIADKLGL- 230 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~- 230 (261)
.+||+.+++.|.++|.. +..++|+|+||||+||||||+.+|++.+++.+|++ ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 56799999999999999999999998877788987 9999999999998888888775421
Q ss_pred --CCCCC---------CchHHHHHHHHHHh--CCCcEEEEEeCC
Q 043094 231 --TFREE---------SGSGRARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 231 --~~~~~---------~~~~~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
..... +.......+...|. .+||+|||||||
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDV 253 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESC
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCc
Confidence 11100 11223445666552 368999999997
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.64 E-value=2.7e-16 Score=156.43 Aligned_cols=114 Identities=22% Similarity=0.226 Sum_probs=86.1
Q ss_pred CCCCcCCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhcc-CCCC-CEEEEEEeCCCCC--HHHH
Q 043094 147 SNKGYEDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKN-NKLF-DLVVFSEMSQSPD--IRKI 220 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i 220 (261)
.|..+..|+||+.++++|.++|. ++..++|+|+||||+||||||+.+|++.+. ..+| +.++||++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 34556779999999999999986 457899999999999999999999987643 3445 6788999998654 3444
Q ss_pred HHHHHHHhCCCCC-----CCCchHHHHHHHHHHhCCC--cEEEEEeCC
Q 043094 221 QGEIADKLGLTFR-----EESGSGRARSLFSRLKKEK--RILVILDNI 261 (261)
Q Consensus 221 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~k--r~LlVlDdv 261 (261)
+..++..+..... ..+.......++..|. ++ |||||||||
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~ 245 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDV 245 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecC
Confidence 6777777765432 1223445667777776 45 999999997
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=138.94 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=82.6
Q ss_pred CCCcCCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhcc-CCCC-CEEEEEEeCCCCCHHHHHHH
Q 043094 148 NKGYEDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKN-NKLF-DLVVFSEMSQSPDIRKIQGE 223 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~ 223 (261)
|..+..|+||+.+++.|.++|. .+..++|+|+||||+||||||+.+|++... ..+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3456679999999999999987 356789999999999999999999987654 4678 57999999876 34444444
Q ss_pred H---HHHhCCCC-----CCCCchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 224 I---ADKLGLTF-----REESGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 224 i---~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
+ +..++... ...+.......+...+.+ ++++|||||||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv 245 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCC
Confidence 4 44555211 112234456667777763 27899999996
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=2.7e-14 Score=104.10 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=64.1
Q ss_pred hhHHhhhhhH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHHHHHHHhhhchhhhhc
Q 043094 18 PSIERQFSYV-RDYTSNFENLKTQVEKLEGEIMSMEHAVNDAERKC-EEIEQNVQNWLASANKAIVEAKKFVGDEATEN 94 (261)
Q Consensus 18 ~~~~~~~~~l-~~~~~~~~~l~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~lr~~~~d~ed~ld~~~~~~ 94 (261)
+.+..++..+ .++...+.++++++++|+++|+.|+++|.+++.+. ...++.++.|+.+||+++||+||+||+|.+..
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555443 35677889999999999999999999999998873 24688999999999999999999999997643
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=1e-10 Score=103.12 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=82.5
Q ss_pred cCCccccHHHHHHHHHHh-c----C--CCceEEEE--EccCCCcHHHHHHHHHHHhccC---CCCCE-EEEEEeCCCCCH
Q 043094 151 YEDFESRISTLNDILGAL-R----N--PDISMLGI--CGMGGIGKTMLAKEVARKAKNN---KLFDL-VVFSEMSQSPDI 217 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~F~~-~~wv~vs~~~~~ 217 (261)
+..++||+.+++.|.+++ . + .....+.| +|++|+|||||++.+++..... ..|+. .+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999998888 4 2 34566777 9999999999999999876431 12333 578888777889
Q ss_pred HHHHHHHHHHhCCCCCC--CCchHHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 218 RKIQGEIADKLGLTFRE--ESGSGRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 218 ~~i~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..++..++.+++...+. .+.......+.+.+. .+++++|||||+
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~ 147 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEF 147 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 99999999999765332 223344566666664 257899999996
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.13 E-value=3e-10 Score=99.28 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=80.8
Q ss_pred cCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccC----CC--CCEEEEEEeCCCC-CHHH
Q 043094 151 YEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNN----KL--FDLVVFSEMSQSP-DIRK 219 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~ 219 (261)
+..++||+.+++.+..++. ....+.+.|+|++|+||||||+.+++..... .. ....+|++++... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 3679999999999887665 4456789999999999999999999876321 11 2346788887777 8889
Q ss_pred HHHHHHHHh-CCCCC--CCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 220 IQGEIADKL-GLTFR--EESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 220 i~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
++..++.++ +.... ..+.......+.+.+.. ++.+|||||+
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi 142 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEV 142 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECH
Confidence 999999888 33221 22334556777777763 4559999986
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.12 E-value=9e-10 Score=96.04 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=84.1
Q ss_pred cCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCC---C-CCEEEEEEeCCCCCHHHHHH
Q 043094 151 YEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNK---L-FDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~i~~ 222 (261)
+..++||+.+++.+..++. ......+.|+|++|+||||||+.+++...... . --..+|++++...+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 4679999999999999884 34567899999999999999999998764210 1 12367888888889999999
Q ss_pred HHHHHhCCCCCCC--CchHHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 223 EIADKLGLTFREE--SGSGRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 223 ~i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.++.+++...+.. +..+....+...+. .+++.+|+|||+
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi 139 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence 9999997654322 23344566667764 346889999986
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.11 E-value=3.2e-10 Score=98.81 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=82.5
Q ss_pred CcCCccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCC-CCEEEEEEeCCCCCHHHHHHHH
Q 043094 150 GYEDFESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKL-FDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i 224 (261)
.+..++||+.+++.|.+++. ......+.|+|++|+|||||++.+++....... -...+|++++...+...++..+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 34679999999999999887 455678999999999999999999987653210 1246788877777888888888
Q ss_pred HHHhCCCCCC--CCchHHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 225 ADKLGLTFRE--ESGSGRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 225 ~~~l~~~~~~--~~~~~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
+.+++..... .+..+....+.+.+.. +++.+|||||+
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 137 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETH
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 8888654332 2233445666666653 34899999984
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.09 E-value=2.7e-10 Score=98.08 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC------CHHHHHH
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP------DIRKIQG 222 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~ 222 (261)
..+..++||+.+++.|.+++..+ +++.|+|++|+|||||++.+++... .+|+++.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHH
Confidence 44567999999999999988753 7899999999999999999987641 6777765432 5667777
Q ss_pred HHHHHhCC-----------------CCC--CCCchHHHHHHHHHHhCCCcEEEEEeCC
Q 043094 223 EIADKLGL-----------------TFR--EESGSGRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 223 ~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.+...+.. ..+ .....+....+.+.+...++++|||||+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~ 137 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEA 137 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETG
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCH
Confidence 77665542 000 0111223334444443213899999995
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.05 E-value=5.2e-09 Score=91.41 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=81.9
Q ss_pred cCCccccHHHHHHHHHHhcC----CCce--EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 151 YEDFESRISTLNDILGALRN----PDIS--MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
+..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++....... ...+|++++...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 36799999999999888762 3334 8999999999999999999988763211 246788888888899999999
Q ss_pred HHHhCCCCCC--CCchHHHHHHHHHHh-CCCcEEEEEeCC
Q 043094 225 ADKLGLTFRE--ESGSGRARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 225 ~~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
+..++...+. .+.......+...+. .+++.+|+|||+
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 134 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDA 134 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETG
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence 9998764332 223344555555554 246889999985
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.5e-09 Score=88.66 Aligned_cols=108 Identities=9% Similarity=0.104 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHHhc----CCCceEEEEEccCCCcHHHHHHHHHHHhccCC---CC-C-EEEEEEeCCCCCHHHHHHHH
Q 043094 154 FESRISTLNDILGALR----NPDISMLGICGMGGIGKTMLAKEVARKAKNNK---LF-D-LVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~i~~~i 224 (261)
+.||+++.+.|...|. ++....+-|+|++|+|||++++.|++...... .. . ..+++++..-.+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999887765 66778899999999999999999999875321 11 1 35778888888999999999
Q ss_pred HHHhCCCCC-CCCchHHHHHHHHHH--hCCCcEEEEEeCC
Q 043094 225 ADKLGLTFR-EESGSGRARSLFSRL--KKEKRILVILDNI 261 (261)
Q Consensus 225 ~~~l~~~~~-~~~~~~~~~~l~~~l--~~~kr~LlVlDdv 261 (261)
++++..... ..........+...+ ..+++++++||++
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~ 141 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNP 141 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence 999964421 112223334444433 1356899999985
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=7.4e-09 Score=89.14 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCC-----CCHHHHHHH
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQS-----PDIRKIQGE 223 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~ 223 (261)
..+..++||+.+++.|.+ +.. +++.|+|++|+|||||++.+++.... . .+|+++... .+...++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----P-YIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----C-EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----C-EEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 765 69999999999999999999987642 2 578877642 345555555
Q ss_pred HHHH
Q 043094 224 IADK 227 (261)
Q Consensus 224 i~~~ 227 (261)
+...
T Consensus 81 l~~~ 84 (357)
T 2fna_A 81 LQKE 84 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.85 E-value=2.3e-08 Score=79.94 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=52.7
Q ss_pred CCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 148 NKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
|....+++|++..++.+.+++.......+.|+|++|+|||+||+.+++.......-...+.++.+...+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 34456789999999999999987666569999999999999999999875422111223445555555544443
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=5.1e-08 Score=76.04 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=43.6
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.....++||+.+++.+.+++.......+.|+|++|+|||+||+.+++...
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999998876677789999999999999999998764
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.69 E-value=1.1e-07 Score=76.88 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=43.5
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.|....+++|++..++.|..++.... ...+.|+|++|+||||||+.+++....
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34445679999999999999887433 458899999999999999999987653
No 17
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.62 E-value=1e-07 Score=74.17 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.....++|++.+++.+.+++.......+.|+|++|+|||+||+.+++...
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999998876677789999999999999999998764
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=2.3e-07 Score=78.75 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|++..++.|.+++..+....+.++|++|+||||+|+.+++...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4445667999999999999998876655599999999999999999998753
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=3.2e-07 Score=78.03 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|++..++.+..++..+....+.++|++|+||||+|+.+++...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4445667999999999999988866665699999999999999999998753
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=2.3e-06 Score=71.55 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=40.2
Q ss_pred CCcCCccccHHHHHHHHHHhcC-------------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRN-------------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..++.|.+++.. .....+.|+|++|+|||+||+.+++...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456789999998888776641 3456789999999999999999998764
No 21
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.28 E-value=2e-06 Score=66.93 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 158 ISTLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 158 ~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.+.+++.+ .....+.|+|++|+|||||++.+++...
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444555554442 2347899999999999999999998775
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.24 E-value=1.4e-06 Score=73.70 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|++..++.+.+++..+....+.++|++|+|||++|+.+++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 344556789999999999998887665569999999999999999999875
No 23
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=3.8e-06 Score=76.46 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcC-----------------CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEE
Q 043094 147 SNKGYEDFESRISTLNDILGALRN-----------------PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFS 209 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv 209 (261)
.|....+++|++..++.|.+|+.. +..+.+.|+|++|+||||||+.+++... + ..+.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 445567899999999999998864 1347899999999999999999998763 2 23455
Q ss_pred EeCCCCCH
Q 043094 210 EMSQSPDI 217 (261)
Q Consensus 210 ~vs~~~~~ 217 (261)
+.+...+.
T Consensus 109 n~s~~~~~ 116 (516)
T 1sxj_A 109 NASDVRSK 116 (516)
T ss_dssp CTTSCCCH
T ss_pred eCCCcchH
Confidence 55554443
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=1.1e-05 Score=71.99 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=44.1
Q ss_pred cCCCCcCCccccHHHH---HHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 146 MSNKGYEDFESRISTL---NDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 146 ~~~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|....+++|.+..+ ..|...+.......+.++|++|+||||||+.+.+...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3455677899998888 6777777767778899999999999999999998764
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.19 E-value=4.8e-06 Score=70.76 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred CCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHH
Q 043094 147 SNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQ 221 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 221 (261)
.|....+++|++..+..+..++. ......+.|+|++|+|||+||+.+++.... ...+++.+......++.
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA 81 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH
Confidence 34456789999998888877765 234567889999999999999999987641 13455555444444443
No 26
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.17 E-value=3.7e-06 Score=66.60 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCC----CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 160 TLNDILGALRNP----DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 160 ~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
.++.+..++... ....+.|+|++|+|||+||+.+++..... ...++|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 445555555422 12788999999999999999999887632 233455654
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.17 E-value=2e-05 Score=66.18 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=39.5
Q ss_pred CCcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..++.|.+++. ......+.|+|++|+||||||+.+++...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 345678999998888887663 12356889999999999999999998664
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.16 E-value=1.8e-05 Score=65.07 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=35.7
Q ss_pred cCCccccHHHHHHHHHHh---cC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGAL---RN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|.+..++.|.+++ .. .....+.|+|++|+|||+||+.+++...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456788877766665443 22 2345688999999999999999998764
No 29
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.12 E-value=1.4e-05 Score=69.17 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=42.8
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|++..++.|..++..+. ...+.|+|++|+||||+|+.+.+...
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445679999999999999887443 45789999999999999999998765
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=6e-06 Score=69.71 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHHHhc---------------CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 153 DFESRISTLNDILGALR---------------NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++|.+..++.|.+++. ......+.|+|++|+|||+||+.+++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46787777766655432 234457899999999999999999887653
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.12 E-value=3.7e-05 Score=65.64 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=36.9
Q ss_pred CcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 150 GYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...++.|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 45578888887777766542 1234678999999999999999999876
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.07 E-value=2.1e-05 Score=66.88 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=43.1
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCc-eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDI-SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|.+..++.+.+++..... .++.+.|++|+|||++|+.+.+...
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 455667899999999999999885544 6778888899999999999987763
No 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.07 E-value=1.6e-05 Score=76.63 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=42.7
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....+++||+.++..+++.|.......+.++|++|+||||||+.+++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4456799999999999999886666667899999999999999999876
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.06 E-value=4.4e-05 Score=64.44 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=37.7
Q ss_pred CcCCccccHHHHHHHHHHhc-------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGALR-------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.|.+..++.|.+++. -.....+.|+|++|+|||+||+.+++...
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34568888887777766543 13456789999999999999999998764
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.06 E-value=1.3e-05 Score=72.04 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=42.7
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|++.++..+.+.|.......+.++|++|+|||+||+.+++...
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999998765566778999999999999999998763
No 36
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.05 E-value=3.3e-05 Score=73.45 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=43.2
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++||+.++..+.+.|.......+.++|++|+|||++|+.+++...
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999998866667788999999999999999998663
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.05 E-value=2.2e-05 Score=67.17 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|....+++|++..++.+..++. ......+.|+|++|+|||+||+.+++...
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34456789999999888888776 24456789999999999999999987754
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.03 E-value=2.3e-05 Score=67.87 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred CcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+++...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34568899988888877653 13456789999999999999999987653
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=1.5e-05 Score=67.94 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..++.|.+++. ....+-+.++|++|+|||+||+.+++...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345678999998888887762 11245789999999999999999998764
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.00 E-value=2.3e-05 Score=67.77 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=38.1
Q ss_pred cCCccccHHHHHH---HHHHhcCCCc--eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLND---ILGALRNPDI--SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|++...+. +.+.+..... +.+.|+|++|+|||+||+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6689999887665 4555554433 5899999999999999999998876
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.98 E-value=4e-05 Score=67.12 Aligned_cols=50 Identities=26% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..++.|.+++. .....-+.|+|++|+|||+||+.+++...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 446678999999998888762 12346789999999999999999987654
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=2.8e-05 Score=66.79 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.....++|.+..++.|..++..+....+.++|++|+||||+|+.+.+...
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445567889888888888888876655589999999999999999998754
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=5e-05 Score=67.74 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 149 KGYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....++.|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678899888888877652 1234678999999999999999999876
No 44
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=6.2e-05 Score=61.84 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCcCCccccHHHHHHHHH---HhcC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILG---ALRN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..++.+.+ ++.. ...+-+.|+|++|+||||||+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345678888776665544 3322 1234588999999999999999998764
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.89 E-value=5.8e-05 Score=64.24 Aligned_cols=39 Identities=31% Similarity=0.283 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCC--CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 160 TLNDILGALRNP--DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 160 ~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+..++..+ ....+.|+|++|+||||||+.+++...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344455544433 356789999999999999999998775
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=3.7e-05 Score=73.16 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=42.2
Q ss_pred CcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 150 GYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+++|++.+++.+...|......-+.++|++|+|||++|+.+.+..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999876666678899999999999999999876
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.87 E-value=5.3e-05 Score=65.57 Aligned_cols=49 Identities=29% Similarity=0.309 Sum_probs=37.7
Q ss_pred CcCCccccHHHHHHHHHHhc------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGALR------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45568888888887777652 11234688999999999999999998874
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.87 E-value=5.2e-05 Score=62.90 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCccccHHHHHHHHH-------Hhc---CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILG-------ALR---NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.....+.+.. .+. ......+.|+|++|+|||+||+.+++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345666555544444 332 44567899999999999999999998754
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=4.9e-05 Score=64.07 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=40.4
Q ss_pred CccccHHHHHHHHHHhcC---------CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 153 DFESRISTLNDILGALRN---------PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccc
Confidence 466877777777666541 123589999999999999999999876421 11234555544
No 50
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=0.00014 Score=58.86 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=54.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------CCCCch
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNK----LFDLVVFSEMSQSPDIRKIQGEIADKLGLTF----------REESGS 238 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------~~~~~~ 238 (261)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...+. .++..++... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999987532211 12468888877766655543 3445555432 011111
Q ss_pred H---HHHHHHHHHhCCCcEEEEEeCC
Q 043094 239 G---RARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 239 ~---~~~~l~~~l~~~kr~LlVlDdv 261 (261)
+ ....+.+.+...+.-+||||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 1 2233555554456789999974
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00012 Score=64.91 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=36.9
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++.|-++.++.|.+.+. . ..++=|.++|++|+|||+||+++++....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4566787777766655432 1 23577899999999999999999998763
No 52
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.85 E-value=6.2e-05 Score=67.08 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=33.0
Q ss_pred cCCcc-ccH--HHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFE-SRI--STLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~-gr~--~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|+ |.. .....+......+. ...+.|+|++|+||||||+.+++...
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555 532 23344444444333 67899999999999999999998764
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=8.7e-05 Score=65.74 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=38.4
Q ss_pred CcCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 150 GYEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...++.|-++.++.|.+.+. . ..++-|.++|++|+|||+||+++++....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 34567788888777765532 1 23577899999999999999999998763
No 54
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00012 Score=64.11 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=36.8
Q ss_pred cCCccccHHHHHHHHHHhc-------------CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 151 YEDFESRISTLNDILGALR-------------NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++-|.++.++.|.+.+. -..++-+.++|++|+|||.||+++++....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 4566787777766655432 123567889999999999999999998763
No 55
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.79 E-value=5.8e-06 Score=62.00 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=31.5
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 153 DFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
+++|++..+..+.+.+. ......|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 56788887777777654 123345789999999999999999754
No 56
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00019 Score=63.55 Aligned_cols=48 Identities=31% Similarity=0.327 Sum_probs=37.0
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++-|-+..++.|.+.+. . ...+=+.++|++|+|||+||+++++...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567788887777665443 1 2356689999999999999999999876
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.78 E-value=4.8e-05 Score=61.31 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=43.0
Q ss_pred CcCCcccc---HHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 150 GYEDFESR---ISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 150 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
...++++. ...++.+..+........+.|+|++|+||||||+.+++..... .....|++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 34556653 3556666666665567889999999999999999999877532 22345666543
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=2.1e-05 Score=67.49 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|++..++.+..++.......+.++|++|+||||+|+.+.+..
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445567789999999999999886655558999999999999999999874
No 59
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=2.4e-05 Score=58.68 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=34.3
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 153 DFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+++|++..+..+.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46788888888877664 2333457899999999999999998754
No 60
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.75 E-value=3.2e-05 Score=65.64 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=41.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhCC
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM--SQSPDIRKIQGEIADKLGLTFREESGSGRARSLFSRLKKE 251 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 251 (261)
+++.|+|++|+||||||..+...... .++|+++ +...+. . ..+.......+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~-------------~--~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG-------------Y--NTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT-------------C--BCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh-------------h--hcCHHHHHHHHHHHHhh-
Confidence 56789999999999999999876211 2345665 332110 0 02223445556666763
Q ss_pred CcEEEEEeCC
Q 043094 252 KRILVILDNI 261 (261)
Q Consensus 252 kr~LlVlDdv 261 (261)
.+ +||+|++
T Consensus 183 ~~-LLVIDsI 191 (331)
T 2vhj_A 183 HR-VIVIDSL 191 (331)
T ss_dssp CS-EEEEECC
T ss_pred CC-EEEEecc
Confidence 44 9999986
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.72 E-value=9.2e-05 Score=66.79 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=37.6
Q ss_pred cCCccccHHHHHHHHHHhc-------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 151 YEDFESRISTLNDILGALR-------------NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++.|.+..++.|.+++. -....-+.|+|++|+|||+||+.+++..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4568899988888877654 1344678999999999999999998765
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00025 Score=63.07 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHhc-------------CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 152 EDFESRISTLNDILGALR-------------NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.++-|.++.++.|.+.+. -...+-|.++|++|+|||+||+++++....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 456788877777765432 134677899999999999999999998763
No 63
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=0.00017 Score=57.32 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=34.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQG 222 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 222 (261)
-.++.|+|++|+|||||+..+.. .. -..++|+.....++...+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH
Confidence 46899999999999999999987 22 23578888777666665543
No 64
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.68 E-value=0.00027 Score=60.80 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=57.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNK----LFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR----------EESG 237 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~ 237 (261)
.-.++.|+|.+|+||||||..++....... .-..++|++....+++..+.. ++..++.+.. ..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999987743211 124688999988888776654 4455554321 1111
Q ss_pred h---HHHHHHHHHHhC--CCcEEEEEeCC
Q 043094 238 S---GRARSLFSRLKK--EKRILVILDNI 261 (261)
Q Consensus 238 ~---~~~~~l~~~l~~--~kr~LlVlDdv 261 (261)
. .....+...+.. .+.-|||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 2 223334455543 46779999975
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.65 E-value=0.00025 Score=63.62 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=35.4
Q ss_pred CcCCccccHHHHHHHHHH---hcCC---------CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGA---LRNP---------DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.|.+..++.+.+. +... -.+-+.|+|++|+|||+||+.+++...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688887766655443 3221 234588999999999999999998765
No 66
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=0.00027 Score=61.01 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=52.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE------ESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 246 (261)
-.++.|+|++|+|||||+..+........ ..++|+.....++.. .+++++..... .+..+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999998765321 246788877777654 45556654321 122233333444
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.+...+.-++|+|.+
T Consensus 134 l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHTSCCSEEEEECT
T ss_pred HhhhcCCCeEEehHh
Confidence 443345668888975
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.65 E-value=7.6e-05 Score=56.32 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=29.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
.-..+.|+|++|+|||||++.+++..... .+. .+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHHH
Confidence 45689999999999999999999877542 222 45565443
No 68
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=4.1e-05 Score=65.82 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCCCcCCccccHHHHHHHHHHh-cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 147 SNKGYEDFESRISTLNDILGAL-RNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|....+++|++...+.+.+++ ..+....+.|+|++|+||||+++.+....
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455677899999999999988 65554449999999999999999998853
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00029 Score=62.08 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=36.8
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++-|.++.++.|.+.+. . ...+=|.++|++|+|||.||+++++....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 4566677777766655432 1 23577899999999999999999998863
No 70
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.61 E-value=0.00043 Score=58.98 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=57.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKL----FDLVVFSEMSQSPDIRKIQGEIADKLGLTFR----------EESGS 238 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 238 (261)
-.++.|+|.+|+||||||..+......... -..++|++....++...+.. ++..++.+.. ..+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999876532110 23679999988888777654 4556654321 11111
Q ss_pred ---HHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 239 ---GRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 239 ---~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
.....+...+.. .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 123445555543 46788999975
No 71
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.61 E-value=0.00045 Score=58.46 Aligned_cols=83 Identities=10% Similarity=0.140 Sum_probs=54.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCchHHH-HHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE-----ESGSGRA-RSLFSR 247 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~ 247 (261)
.++-|.|++|+|||||+.++.........=..++||+....++.. .+++++.+.+. .+..+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999998887665422112368999988888764 26777765431 1222222 333444
Q ss_pred H---hCCCcEEEEEeCC
Q 043094 248 L---KKEKRILVILDNI 261 (261)
Q Consensus 248 l---~~~kr~LlVlDdv 261 (261)
+ ..++.-|||+|-|
T Consensus 104 l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHTCCTTCCEEEEEECS
T ss_pred HHHhhccCceEEEEecc
Confidence 4 4467889999964
No 72
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.59 E-value=0.00027 Score=60.15 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=57.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCC---------CC-----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNK---------LF-----DLVVFSEMSQSPDIRKIQGEIADKLGLTFR----- 233 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----- 233 (261)
-.++.|+|.+|+||||||..++....... .. ..++|++....+++.++.+ ++..++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 47899999999999999999987642110 11 3679999988888877764 3455654321
Q ss_pred ----C-CCch---HHHHHHHHHHhC-CCcEEEEEeCC
Q 043094 234 ----E-ESGS---GRARSLFSRLKK-EKRILVILDNI 261 (261)
Q Consensus 234 ----~-~~~~---~~~~~l~~~l~~-~kr~LlVlDdv 261 (261)
. .+.. +....+...+.. .+.-+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0 1111 123345555554 45678999975
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.57 E-value=5.5e-05 Score=63.68 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+..+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999885
No 74
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.53 E-value=0.00011 Score=62.40 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 158 ISTLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 158 ~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+..+.+++.. .....+.|+|++|+|||+||+.+++...
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455555552 1246889999999999999999998765
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.00069 Score=56.35 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=31.5
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.++.++.|.+.+. . .-.+-+.++|++|+||||||+.++....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4456676666666554332 1 1112289999999999999999998764
No 76
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.47 E-value=0.00036 Score=61.22 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=53.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCch
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNK----LFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR----------EESGS 238 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 238 (261)
-.++.|+|++|+|||||+..++-...... .-..++|++....+....+. .+++.++.... ..+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 46899999999999999998764432211 23458888877777666543 35666654321 01111
Q ss_pred ---HHHHHHHHHHhCCCcEEEEEeCC
Q 043094 239 ---GRARSLFSRLKKEKRILVILDNI 261 (261)
Q Consensus 239 ---~~~~~l~~~l~~~kr~LlVlDdv 261 (261)
.....+...+...+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 12233444444456788899964
No 77
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.00053 Score=59.10 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=51.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE------ESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 246 (261)
-.++.|+|.+|+||||||..+........ ..++|++....++.. .+..++..... .+..+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46899999999999999999987654321 357889888777653 24556544221 111222222332
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.....+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 333345678899964
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.45 E-value=0.00016 Score=61.88 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=39.0
Q ss_pred CCCCcCCccccHHHHHHHHHHhc-----CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALR-----NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.....++|.+..++.+...+. +.....+.++|++|+||||||+.+++...
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 33445667888777776655543 23457799999999999999999998764
No 79
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.45 E-value=0.0007 Score=58.72 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=51.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 246 (261)
-.++.|+|.+|+||||||..+........ ..++|++....++.. .+..++.+.. ..+..+....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 46889999999999999999887654322 357899988877654 2455555422 1122223333333
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
....++--+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 333344568889975
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=0.00087 Score=53.56 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=36.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccC---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNN---K-LFDLVVFSEMSQSPDIRKIQGEIADKLG 229 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 229 (261)
-.+++|+|++|+|||||++.+....... . .-...+|+.-...+....+ ..+++.++
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i-~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4699999999999999999998754321 1 1245778776554444433 33444443
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00083 Score=56.78 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhccC--CCCCEEEEEEeCC-CCCHHHHHHHHHHHhC
Q 043094 158 ISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKNN--KLFDLVVFSEMSQ-SPDIRKIQGEIADKLG 229 (261)
Q Consensus 158 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~ 229 (261)
++.++.|...+..++.....++|++|+||||+|+.+.+..... .|.+. .++..+. ...+..+ +++.+.+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHh
Confidence 4456667777776667889999999999999999998753211 24444 4555443 4454443 44555553
No 82
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=0.00019 Score=60.14 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCccccHHHHHHHHHHhcC--------------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALRN--------------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578988888887766542 2346788999999999999999998764
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.35 E-value=0.00062 Score=54.40 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=31.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
-.++.|+|++|+|||||++.+........ ..+.|+... .....+...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~--~~~~~~~~~~ 70 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTE--ESRDSIIRQA 70 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESS--SCHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcc--cCHHHHHHHH
Confidence 36899999999999999999986543211 134555543 3445554443
No 84
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.34 E-value=0.00089 Score=57.85 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=50.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCchHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE-----ESGSGRARSLFSR 247 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 247 (261)
-.++.|.|.+|+||||||..+........ ..++|++....++.. .+..++.+... .+..+....+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 46899999999999999999887664322 257899988877754 24555544221 1112222223333
Q ss_pred H-hCCCcEEEEEeCC
Q 043094 248 L-KKEKRILVILDNI 261 (261)
Q Consensus 248 l-~~~kr~LlVlDdv 261 (261)
+ ..++.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 3 2244568889964
No 85
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.34 E-value=0.00026 Score=55.92 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 157 RISTLNDILGALRN---PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 157 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
|+..++.|.+.+.. ....+|+|+|++|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45567777776653 3457999999999999999999987654
No 86
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.28 E-value=0.00019 Score=59.10 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=33.2
Q ss_pred cCCccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|.+..+..+.+.+. ......+.|+|.+|+|||+||+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3457788888777766554 22335678999999999999999987653
No 87
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.28 E-value=0.0021 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++++|++|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987665
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.27 E-value=0.0016 Score=58.68 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=35.3
Q ss_pred CCcCCccccHHHHHHHHH---HhcCC---------CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILG---ALRNP---------DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....++.|.++.+..+.+ ++.+. -.+-+.|+|++|+||||||+.+++...
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678888776655544 33321 123489999999999999999998764
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.27 E-value=0.00034 Score=55.57 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 160 TLNDILGALRN--PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 160 ~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
-++.|.+.+.. ....+++|+|++|+|||||++.+.....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44556666553 4567999999999999999999987665
No 90
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.23 E-value=0.00042 Score=60.25 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccC-CCCCEEEEEEeCCCC
Q 043094 163 DILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNN-KLFDLVVFSEMSQSP 215 (261)
Q Consensus 163 ~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 215 (261)
+.++.+. -..-..++|+|.+|+|||||++.+.+....+ ..+. ++++-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 3455544 2345689999999999999999998765421 2233 4457777654
No 91
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.23 E-value=0.00088 Score=57.71 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=37.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCC----CEEEEEEeCCCCCHHHHHHHHHHHhC
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLF----DLVVFSEMSQSPDIRKIQGEIADKLG 229 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~ 229 (261)
.-.++.|+|++|+|||||+..+.......... ..++|++....+....+ ..+++.++
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 34799999999999999999999775311111 23588887666554443 33444443
No 92
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.19 E-value=0.00019 Score=54.66 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=18.8
Q ss_pred eEEEEEccCCCcHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEV 193 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v 193 (261)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 93
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.00043 Score=65.84 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++-|.++|++|+|||+||+.+++...
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999997664
No 94
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.16 E-value=0.00026 Score=54.01 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987643
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.16 E-value=0.00033 Score=67.03 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=35.6
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|.+..++.|.+++. . .....+.|+|++|+||||||+.+.+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3557787777777666543 1 2345789999999999999999987543
No 96
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00027 Score=54.35 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987653
No 97
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.15 E-value=0.0042 Score=52.59 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADK 227 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 227 (261)
-.++.|.|.+|+||||||..++.+.-.+. ..++|++.. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987665432 467777654 4556666665543
No 98
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00043 Score=65.80 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=42.0
Q ss_pred CCccccHHHHHHHHHHhc-------C--CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCC
Q 043094 152 EDFESRISTLNDILGALR-------N--PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQ 213 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 213 (261)
..++|.+..++.+...+. . .....+.++|++|+|||+||+.+++..... -...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 467899888888777665 1 122379999999999999999999876321 12234555543
No 99
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.14 E-value=0.00018 Score=59.27 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=33.4
Q ss_pred CcCCccccHHHHHHHHHHhc---C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGALR---N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|.+..++.+.+.+. . ....-+.|+|++|+|||+||+.+++...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567776655555444322 1 1234477999999999999999998765
No 100
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.14 E-value=0.0008 Score=63.92 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCccccHHHHHHHHHHhc-------C--CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 152 EDFESRISTLNDILGALR-------N--PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++|.+..++.+...+. + .....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 357788888877766554 1 123478999999999999999999877
No 101
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.13 E-value=0.00077 Score=55.06 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=32.6
Q ss_pred CcCCccccHHHHHHHH---HHhcC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDIL---GALRN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~---~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|.+.....+. ..+.. .-.+-+.|+|++|+|||||++.+++...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456778765544443 33221 1112389999999999999999998764
No 102
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.13 E-value=0.0016 Score=58.13 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=52.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHH--hC------CCCCCCCchHH----
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADK--LG------LTFREESGSGR---- 240 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~--l~------~~~~~~~~~~~---- 240 (261)
+.++|+|.+|+|||||++.+..+.... +-+.++++-+.+..+ ..++..++... +. ......+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998876532 234567777777653 45566555432 00 00001111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEeCC
Q 043094 241 -ARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 241 -~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.-.+.+++. .+++.||++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 113445543 379999999996
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.0003 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999754
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.11 E-value=0.00028 Score=60.38 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 149 KGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|.+..+..+...+......-+.|+|++|+|||+||+.+.+...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556889887665544444333344589999999999999999998654
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 106
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00034 Score=55.09 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987653
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00027 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|+|+|++|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987643
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.09 E-value=0.00084 Score=59.97 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=36.7
Q ss_pred cCCccccHHHHHHHHH---HhcCC--CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILG---ALRNP--DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~---~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++|.++.++.+.. ++..+ ..+-+.++|++|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4678999887765444 33332 235788999999999999999998875
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.08 E-value=0.0034 Score=53.58 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCC-ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 158 ISTLNDILGALRNPD-ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 158 ~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++..+.+...+..++ ...+.++|++|+|||++|+.+.+...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 455667777776555 45799999999999999999998754
No 110
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.06 E-value=0.0005 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.323 Sum_probs=36.1
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 153 DFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|++..+..+.+.+. ......+.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 57788888888777665 23345678999999999999999998653
No 111
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.00041 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....+|+|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455799999999999999999998765
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.05 E-value=0.00042 Score=54.61 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.....+|.|+|++|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999999999999988765
No 113
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.05 E-value=0.001 Score=55.24 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=33.3
Q ss_pred CcCCccccHHHHHHHHHH---hcC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 150 GYEDFESRISTLNDILGA---LRN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|.+..+..+.+. +.. .-.+-+.|+|++|+|||||++.++....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 355678877665554433 221 0112389999999999999999998764
No 114
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.04 E-value=0.0064 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+|.++|.+|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999877654
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00037 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.03 E-value=0.00041 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.|.|+|++|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.02 E-value=0.0051 Score=54.40 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+|.++|++|+||||++..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999876654
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.00 E-value=0.00055 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 119
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00061 Score=52.88 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+|.|+|++|+||||+++.+......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999987653
No 120
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.99 E-value=0.00049 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 121
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.98 E-value=0.001 Score=64.09 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHhcC---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 153 DFESRISTLNDILGALRN---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578888888777666541 1235889999999999999999998764
No 122
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00041 Score=54.66 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|+|++|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987753
No 123
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.0026 Score=58.06 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=33.7
Q ss_pred CccccHHHHHHHHHHhc------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 153 DFESRISTLNDILGALR------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+++|.+...+.+.+.+. ......+.++|++|+||||||+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46676666555544322 23456899999999999999999998774
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00067 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|.|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.96 E-value=0.00048 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998753
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.0042 Score=50.04 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=31.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
-.++.|+|++|+|||||+..+........ ..++|++... ...++.+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS--CHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC--CHHHHHHHH
Confidence 36899999999999999888765543211 2466766544 344444433
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.0005 Score=53.04 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.95 E-value=0.00054 Score=58.31 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35788888888887776643 3688999999999999999988653
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.94 E-value=0.001 Score=57.45 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHHHhc---------------CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 154 FESRISTLNDILGALR---------------NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++|.+..++.+...+. ......+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788777777776662 11346789999999999999999998763
No 130
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.94 E-value=0.00057 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|.|++|+||||+++.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998665
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.93 E-value=0.00057 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 132
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.91 E-value=0.00062 Score=53.92 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988644
No 133
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.90 E-value=0.00066 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|+|+|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998654
No 134
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.90 E-value=0.00059 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 135
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.90 E-value=0.00066 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|+|++|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987654
No 136
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00066 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|+|.|++|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998664
No 137
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00069 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.+..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999764
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.0007 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999987653
No 139
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.0008 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|.|++|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998654
No 140
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.89 E-value=0.001 Score=53.07 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444455678999999999999999999987754
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.88 E-value=0.00056 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|+|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 142
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.88 E-value=0.00075 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+..+|.|.|++|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 143
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.88 E-value=0.00076 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.88 E-value=0.0007 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|+|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.87 E-value=0.00048 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
...+++|+|++|+|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.87 E-value=0.0012 Score=55.30 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=33.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccCC-CCCEEEEEEeCCCCCHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKNNK-LFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
....+|+|+|..|+||||||+.+........ .......|+....+-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4567999999999999999999987654311 12233444444333334444444
No 147
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.00053 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997653
No 148
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.86 E-value=0.0081 Score=53.52 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=62.0
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC------C---
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADKLGLT------F--- 232 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~------~--- 232 (261)
.++.|.. .+-..++|+|.+|+|||+|++.+.++... .+-++++++-+.+... ..++.+++...=... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4555542 34467899999999999999999887532 3457788888887654 567777776542211 0
Q ss_pred ----CCCCchH------HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 233 ----REESGSG------RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 233 ----~~~~~~~------~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.+.+... ..-.+.+++. .++..||++||+
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0111111 1123455554 379999999996
No 149
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00063 Score=53.74 Aligned_cols=26 Identities=38% Similarity=0.614 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 150
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.86 E-value=0.00073 Score=51.49 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.|.|++|+||||+++.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987654
No 151
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.84 E-value=0.011 Score=52.36 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
..++|.++|.+|+||||++..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999877764
No 152
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.84 E-value=0.00067 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998654
No 153
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00067 Score=53.41 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 154
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.83 E-value=0.0051 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|+|.|+.|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987654
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.83 E-value=0.0035 Score=64.84 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=54.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----C-CchHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE-----E-SGSGRARSLF 245 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~-~~~~~~~~l~ 245 (261)
..+++.|+|++|+|||+||.++........ ..++|+.+...++... ++.++.+... . +.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457999999999999999999988765322 2468888888777665 4455533211 1 1222333344
Q ss_pred HHHhCCCcEEEEEeCC
Q 043094 246 SRLKKEKRILVILDNI 261 (261)
Q Consensus 246 ~~l~~~kr~LlVlDdv 261 (261)
......+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 3434457789999975
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.83 E-value=0.0015 Score=56.58 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
No 157
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.83 E-value=0.0017 Score=55.85 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred HHHHHHHHHh----cCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 159 STLNDILGAL----RNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 159 ~~~~~l~~~l----~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-.+.+++.+ ..+....|.|+|++|+||||+++.++....
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444443 245567799999999999999999887553
No 158
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.83 E-value=0.00097 Score=53.48 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.++|.|.|++|+||||.|+.+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3578999999999999999999998764
No 159
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.82 E-value=0.0043 Score=55.47 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=62.7
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC-------C--
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEIADKLGLT-------F-- 232 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~-- 232 (261)
.++.|. =.+-..++|+|.+|+|||+|++.+.++... .|-++++++-+.+... ..++.+++...=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344444 234467899999999999999999987532 3457888998887664 567777776531111 0
Q ss_pred -----CCCCchH------HHHHHHHHHhC--CCcEEEEEeCC
Q 043094 233 -----REESGSG------RARSLFSRLKK--EKRILVILDNI 261 (261)
Q Consensus 233 -----~~~~~~~------~~~~l~~~l~~--~kr~LlVlDdv 261 (261)
.+.+... ..-.+.+++.. ++..||++||+
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0111111 12235566653 79999999996
No 160
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.81 E-value=0.00097 Score=52.56 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...|.|.|++|+||||+|+.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999987753
No 161
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.80 E-value=0.0015 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|+|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 162
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.80 E-value=0.00093 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.+.|++|+||||+++.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998654
No 163
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.80 E-value=0.0026 Score=50.24 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=26.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL 205 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~ 205 (261)
..+|.|.|++|+||||+++.+.+.... .+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999987653 24554
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.80 E-value=0.00076 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+..+|+|+|++|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998654
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.0071 Score=51.03 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+|.|+|++|+||||++..++.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4579999999999999999999977653
No 166
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.79 E-value=0.00069 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|+|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
No 167
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.78 E-value=0.0057 Score=53.97 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...++.++|++|+||||++..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999987764
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00069 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.78 E-value=0.0011 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....|.|+|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 170
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.78 E-value=0.0009 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|.|+|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999864
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.77 E-value=0.00089 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987654
No 172
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.76 E-value=0.0012 Score=52.57 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 158 ISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 158 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444455544445678999999999999999999987753
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.76 E-value=0.00065 Score=52.36 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=18.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 174
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.75 E-value=0.018 Score=51.93 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+..+|+|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 175
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.75 E-value=0.001 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 176
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.75 E-value=0.00083 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.0011 Score=52.97 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999987654
No 178
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.74 E-value=0.001 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...+|+|+|++|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
No 179
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.73 E-value=0.016 Score=49.37 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+++|+|+.|+||||+++.+......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999976653
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.72 E-value=0.00094 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 181
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.71 E-value=0.0009 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998664
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.71 E-value=0.00092 Score=52.96 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.68 E-value=0.0012 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 184
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.0011 Score=50.30 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 185
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.66 E-value=0.0013 Score=53.48 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 186
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.66 E-value=0.0013 Score=55.82 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+++|+|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457999999999999999999998665
No 187
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.0013 Score=51.97 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL 205 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~ 205 (261)
..+|.|.|++|+||||+++.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999987653 34555
No 188
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.65 E-value=0.0012 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998754
No 189
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.64 E-value=0.003 Score=51.34 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.....|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 190
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.0012 Score=52.68 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...|.|.|++|+||||+++.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987664
No 191
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.63 E-value=0.0013 Score=59.49 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred CccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 153 DFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|++..++.+...+..+ ..+.++|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4678888887777666533 4688999999999999999987553
No 192
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.0014 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+|+|.|++|+||||+|+.+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999987644
No 193
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.62 E-value=0.001 Score=53.25 Aligned_cols=26 Identities=38% Similarity=0.614 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.62 E-value=0.0015 Score=51.61 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998754
No 195
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.61 E-value=0.01 Score=51.60 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=35.4
Q ss_pred HHHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccC-CCCCEEEEEEeCCC
Q 043094 163 DILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNN-KLFDLVVFSEMSQS 214 (261)
Q Consensus 163 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 214 (261)
+.++.+.. ..-..++|+|.+|+|||+|++.+.+....+ ..+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45666653 345688999999999999999999876431 2233 356666654
No 196
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.61 E-value=0.0014 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.61 E-value=0.0016 Score=50.01 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.|+|+.|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457899999999999999999998765
No 198
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.0019 Score=52.92 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999987653
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.60 E-value=0.0015 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...+|+|+|+.|+||||+++.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999843
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.59 E-value=0.0014 Score=49.81 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999765
No 201
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.59 E-value=0.017 Score=48.50 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+++++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987665
No 202
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.0015 Score=51.18 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|.|++|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998654
No 203
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.57 E-value=0.0015 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 204
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.56 E-value=0.0017 Score=49.98 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|+|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999987653
No 205
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.56 E-value=0.0015 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 206
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.55 E-value=0.0017 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+|+|+|+.|+||||+++.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998753
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.54 E-value=0.002 Score=54.41 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|+|++|+|||||++.+..-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999997655
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.51 E-value=0.0014 Score=52.80 Aligned_cols=28 Identities=18% Similarity=-0.167 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.-.++.|+|.+|+||||++..+.+....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4578899999999999999888877754
No 209
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0021 Score=50.95 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+|.|+|++|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999987654
No 210
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0019 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 211
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.50 E-value=0.00084 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.50 E-value=0.0015 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
-.+++|+|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999883
No 213
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.49 E-value=0.0017 Score=55.10 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
++.+||+|.|-||+||||.+-.+.--..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA 73 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 73 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence 4679999999999999999888876554
No 214
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.48 E-value=0.0019 Score=59.80 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 147 SNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3444567889888887777766644 5889999999999999999998654
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.47 E-value=0.0019 Score=51.84 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987654
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0079 Score=57.24 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=34.5
Q ss_pred cCCccccHHHHHHHHHHhc----C---------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALR----N---------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.++.++.|.+.+. . ...+-+.++|++|+|||.||+.+++...
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3455677776666655433 1 1235578999999999999999998765
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.0053 Score=49.50 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL 205 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~ 205 (261)
....|.|.|++|+||||+++.+.+.... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 4468999999999999999999988764 4444
No 218
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.46 E-value=0.0021 Score=57.01 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=35.1
Q ss_pred CCccccHHHHHHHHHHhcC--------------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 152 EDFESRISTLNDILGALRN--------------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.++.++.|...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4577877777666554421 1346789999999999999999998765
No 219
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0017 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=21.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+++|+|+.|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998653
No 220
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.44 E-value=0.0019 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.. .+++|+|+.|+|||||.+.+..-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999999854
No 221
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.43 E-value=0.0021 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0083 Score=48.30 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEI 224 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 224 (261)
-.++.|.|.+|+|||++|.+++.+...+. -..++|++.. .+...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 46889999999999999988764432111 1234555543 3455555554
No 223
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.40 E-value=0.0028 Score=50.18 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=28.6
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 161 LNDILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 161 ~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+..+..++.+ ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5555555553 2234689999999999999999998764
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0017 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
-.+|.|+|++|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987554
No 225
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.38 E-value=0.0024 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|.|.|+||+||+|.|+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997764
No 226
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.38 E-value=0.0012 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHH-HHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVA-RKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~-~~~ 197 (261)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 543
No 227
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.37 E-value=0.015 Score=48.80 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...+++++|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999977653
No 228
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.36 E-value=0.0019 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999753
No 229
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.36 E-value=0.0024 Score=53.89 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 230
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.36 E-value=0.0024 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 231
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.35 E-value=0.0023 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhc
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987543
No 232
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.34 E-value=0.0028 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...|.|.|++|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987654
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.34 E-value=0.0027 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|.|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 234
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.34 E-value=0.0025 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999987663
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0026 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|+|+.|+|||||++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999997654
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.32 E-value=0.0018 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999853
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.31 E-value=0.0026 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0018 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999876
No 239
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.29 E-value=0.02 Score=48.87 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=35.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
-.++.|.|.+|+||||||..++.+..... ..++|++. ..+...+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHH
Confidence 36889999999999999999988765321 24566554 4556666666644
No 240
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.28 E-value=0.02 Score=50.88 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=34.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
-.++.|.|.+|+|||||+..+..+...... ..++|++.. .+...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 468999999999999999999987653211 245666544 34455555543
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.25 E-value=0.013 Score=60.00 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=51.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFR------EESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 246 (261)
-.++.|.|.+|+||||||..+........ ..++|++........ .++.++.+.. ..+..+....+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 46899999999999999999988765322 246788777666543 1556664322 1122233333433
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.....+.-+||+|.+
T Consensus 805 lv~~~~~~lVVIDsL 819 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSV 819 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHccCCCEEEEech
Confidence 333345678899975
No 242
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.25 E-value=0.0089 Score=52.98 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=58.6
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCC-CCC-EEEEEEeCCCC-CHHHHHHHHHHH--hC-----CCC
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNK-LFD-LVVFSEMSQSP-DIRKIQGEIADK--LG-----LTF 232 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~i~~~i~~~--l~-----~~~ 232 (261)
.++.|.. .+-..++|+|.+|+|||+|+..+.+...... +-+ .++++-+.+.. .+.++.+.+... +. ...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444441 2335578999999999999999998876421 112 56777777654 456666665442 11 011
Q ss_pred CCCCchH------HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 233 REESGSG------RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~------~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.+.+... ..-.+.+++. .++..||++||+
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111111 1223566666 379999999985
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.24 E-value=0.0021 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997543
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.23 E-value=0.0021 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999853
No 245
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0014 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
.+++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876654
No 246
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.21 E-value=0.0027 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 247
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.20 E-value=0.02 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++|.|++|+||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987764
No 248
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.20 E-value=0.028 Score=49.82 Aligned_cols=51 Identities=18% Similarity=0.038 Sum_probs=35.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
-.++.|.|.+|+||||||..++.+...... ..++|++.. .+...+...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHH
Confidence 468899999999999999999887653211 245666554 455666666654
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.20 E-value=0.0026 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0036 Score=48.32 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|+|+.|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999987654
No 251
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.17 E-value=0.0024 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999753
No 252
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.17 E-value=0.0029 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.17 E-value=0.0024 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999853
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.17 E-value=0.0032 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 255
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.16 E-value=0.016 Score=51.97 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHH-HHHHHHHhcc----CCCCC-EEEEEEeCCCCC-HHHHHHHHHHHhCCC----
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTML-AKEVARKAKN----NKLFD-LVVFSEMSQSPD-IRKIQGEIADKLGLT---- 231 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtL-a~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~---- 231 (261)
.++.+. =.+-..++|+|.+|+|||+| ...+.+.... ..+-+ .++++-+.+..+ +.++.+.+...=...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 445444 23446789999999999999 5577766542 12344 478888887654 556666665421110
Q ss_pred ---CCCCCchHH------HHHHHHHHh-CCCcEEEEEeCC
Q 043094 232 ---FREESGSGR------ARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 232 ---~~~~~~~~~------~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..+.+.... .-.+-+++. .++..||++||+
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111111111 123445554 479999999985
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.16 E-value=0.0035 Score=53.59 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|+|+|++|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 257
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.16 E-value=0.0025 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 258
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.14 E-value=0.0029 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999853
No 259
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.14 E-value=0.0025 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999999853
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.14 E-value=0.0027 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999853
No 261
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.14 E-value=0.011 Score=47.85 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=28.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEE
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSE 210 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 210 (261)
...|.|.|+.|+||||+++.+.+.... .++.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 468999999999999999999988764 3465344443
No 262
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.13 E-value=0.0037 Score=51.55 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345789999999999999999998754
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.13 E-value=0.0023 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999854
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.11 E-value=0.0038 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+|.|+|++|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998764
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.11 E-value=0.0027 Score=51.89 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999754
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.11 E-value=0.013 Score=48.75 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEe
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEM 211 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~v 211 (261)
.-.+++|+|++|+|||||++.+.........- .++|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~-~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-KVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC-CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC-eEEEEeC
Confidence 34689999999999999999998876532111 3455544
No 267
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0043 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|+|+.|+|||||++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 357999999999999999999998654
No 268
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.10 E-value=0.0085 Score=51.59 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=28.9
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 161 LNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+...+. ..+..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444444 45678999999999999999999887653
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.09 E-value=0.019 Score=59.56 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=53.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE------ESGSGRARSLF 245 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~ 245 (261)
.-.++.|+|++|+||||||.++........ ..++|++....++... ++.++.+... .+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 346999999999999999999988776322 3578888887777542 5566654321 12223333333
Q ss_pred HHHhCCCcEEEEEeCC
Q 043094 246 SRLKKEKRILVILDNI 261 (261)
Q Consensus 246 ~~l~~~kr~LlVlDdv 261 (261)
.....++.-+||+|-+
T Consensus 455 ~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSV 470 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHHhcCCcEEEECCH
Confidence 3333345678888864
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.07 E-value=0.0029 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999854
No 271
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.07 E-value=0.0022 Score=53.77 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.06 E-value=0.0029 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999753
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.05 E-value=0.003 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999854
No 274
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.05 E-value=0.005 Score=54.78 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=59.8
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCC--CCEEEEEEeCCCC-CHHHHHHHHHHHhCC-------CC
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKL--FDLVVFSEMSQSP-DIRKIQGEIADKLGL-------TF 232 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~i~~~i~~~l~~-------~~ 232 (261)
.++.|.. .+-..++|+|.+|+|||+|+..+.++....+. =+.++++-+.+.. .+.++.+++...=.. ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555542 23456788999999999999999998875221 1357777777654 356677776543111 01
Q ss_pred CCCCchH------HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 233 REESGSG------RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~------~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
.+.+... ..-.+.+++. .++..||++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111 1123455655 479999999984
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.04 E-value=0.004 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.02 E-value=0.0032 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999754
No 277
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.01 E-value=0.0032 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999853
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.01 E-value=0.0032 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999853
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.00 E-value=0.0049 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998654
No 280
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.00 E-value=0.026 Score=50.11 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIA 225 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 225 (261)
-.++.|.|.+|+||||+|..++.+.-.++ ..++|++.. -+..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHH
Confidence 46899999999999999999988765431 246666544 34444544444
No 281
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.99 E-value=0.014 Score=51.94 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 157 RISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+..+..++...+ +.+.|.|.+|+||||++..+......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3444555655665443 48999999999999999999987754
No 282
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.99 E-value=0.004 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 283
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.97 E-value=0.0034 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
No 284
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.96 E-value=0.014 Score=51.65 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=58.7
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccC--------CCCC-EEEEEEeCCCC-CHHHHHHHHHHH--hC-
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNN--------KLFD-LVVFSEMSQSP-DIRKIQGEIADK--LG- 229 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~i~~~--l~- 229 (261)
.++.|. =.+-..++|+|.+|+|||+|+..+.+..... .+-+ .++++-+.+.. .+.++.+.+... +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 444444 2234567899999999999999999887642 1223 56777777654 355666665432 10
Q ss_pred ----CCCCCCCchH------HHHHHHHHHh--CCCcEEEEEeCC
Q 043094 230 ----LTFREESGSG------RARSLFSRLK--KEKRILVILDNI 261 (261)
Q Consensus 230 ----~~~~~~~~~~------~~~~l~~~l~--~~kr~LlVlDdv 261 (261)
....+.+... ..-.+.+++. .++..||++||+
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0111111111 1223566666 379999999985
No 285
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.96 E-value=0.0049 Score=48.34 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+.+.++....+.-.|.|+|.+|+|||||...+.++.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333444556678999999999999999888654
No 286
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.96 E-value=0.016 Score=46.23 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
..|.+.|+.|+||||+++.+.+..... .+..+.+..-+......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887653 3422333333222234455555554
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.95 E-value=0.0046 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345789999999999999999998765
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.94 E-value=0.021 Score=58.48 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=58.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCchHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKLGLTFRE------ESGSGRARSLFS 246 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 246 (261)
-++|-|+|+.|+||||||-++....... =..++|+...+.+++.- ++.+|.+.+. ....+....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999998665532 34688998888888763 7778776442 222334445555
Q ss_pred HHhCCCcEEEEEeCC
Q 043094 247 RLKKEKRILVILDNI 261 (261)
Q Consensus 247 ~l~~~kr~LlVlDdv 261 (261)
.++.+.--+||+|-|
T Consensus 1504 ~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHcCCCCEEEEccH
Confidence 555567778888865
No 289
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.93 E-value=0.011 Score=47.53 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
......|.|.|+.|+||||+++.+.+.......+++.....-+......+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 445678999999999999999999987654122343331222222223344555554
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.93 E-value=0.005 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.92 E-value=0.0055 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998643
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.92 E-value=0.0035 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999987543
No 293
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.91 E-value=0.023 Score=45.26 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCE
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDL 205 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~ 205 (261)
...|.|.|+.|+||||+++.+.+.... ..+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc
Confidence 368899999999999999999988764 34555
No 294
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.90 E-value=0.0067 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998664
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.90 E-value=0.0053 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 296
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.89 E-value=0.034 Score=50.56 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=40.7
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHHH
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGEI 224 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i 224 (261)
.++.|. -.+-..++|.|..|+|||+|+..+.+... -+.++++-+.+.. ...++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 455555 23457889999999999999999987643 3678888887763 345555443
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.88 E-value=0.0062 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 298
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.87 E-value=0.0051 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.|+|+.|+|||||+..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998543
No 299
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.87 E-value=0.0063 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+++|+|..|+|||||++.+.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 457999999999999999999987665
No 300
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0063 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 301
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.85 E-value=0.024 Score=50.79 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=56.4
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCCC-HHHHHHHHHHHhCCC-------C
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSPD-IRKIQGEIADKLGLT-------F 232 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~ 232 (261)
.++.+. =.+-..++|+|.+|+|||+|| ..+.+... -+. ++++-+.+..+ +.++.+.+...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 455554 234467899999999999995 57766542 453 57888887654 556666665431111 1
Q ss_pred CCCCchHH------HHHHHHHHh-CCCcEEEEEeCC
Q 043094 233 REESGSGR------ARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~~------~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.+.+.... .-.+-+++. .++..||++||+
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11111111 123445554 479999999985
No 302
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.85 E-value=0.0047 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
-.++.|+|++|+|||||+..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987543
No 303
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.85 E-value=0.0047 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+.--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999999853
No 304
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.84 E-value=0.027 Score=51.00 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCC-HHHHHHHH
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPD-IRKIQGEI 224 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i 224 (261)
.++.|.. .+-..++|+|..|+|||+|++.+.+... -+.++++-+.+..+ ..++++.+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 4555552 3446789999999999999999977643 36788898887665 45666554
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.80 E-value=0.0077 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|+|+|.+|+||||++..+.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987665
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.79 E-value=0.0067 Score=45.75 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999975
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.0045 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 308
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.77 E-value=0.0098 Score=48.42 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++.+.|.||+|||||+..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999987665
No 309
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.76 E-value=0.0043 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998764
No 310
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.76 E-value=0.013 Score=52.91 Aligned_cols=47 Identities=4% Similarity=-0.099 Sum_probs=34.3
Q ss_pred CccccHHHHHHHHHHhc--CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 153 DFESRISTLNDILGALR--NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....+.+..+.+.+... ..+..+|.+.|++|+||||+|+.+......
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34445555555555542 345578999999999999999999988763
No 311
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.75 E-value=0.011 Score=53.05 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHH-HHHHHHhccCCCCCE-EEEEEeCCCCC-HHHHHHHHHHHhCC-------CC
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLA-KEVARKAKNNKLFDL-VVFSEMSQSPD-IRKIQGEIADKLGL-------TF 232 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~-------~~ 232 (261)
.++.+.. .+-..++|+|.+|+|||+|| ..+.+.. +-+. ++++-+.+..+ +.++.+.+...=.. ..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 3444441 23467899999999999995 5776654 2454 57888887654 55666666542110 01
Q ss_pred CCCCchHH------HHHHHHHHh-CCCcEEEEEeCC
Q 043094 233 REESGSGR------ARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~~------~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.+.+.... .-.+.+++. .++..||++||+
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11111111 123445554 479999999985
No 312
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.73 E-value=0.024 Score=44.50 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=32.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
.|+|=|.-|+||||.++.+++..+.++ .+ +++..-+......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhh
Confidence 478889999999999999998876532 23 233333333334444555543
No 313
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.72 E-value=0.0059 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999853
No 314
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.71 E-value=0.0059 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3468999999999999999999853
No 315
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.0078 Score=45.88 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHH
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
+.+.+.+ .....|.|+|.+|+|||||...+.+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 4444444 5667889999999999999998874
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.70 E-value=0.062 Score=48.34 Aligned_cols=51 Identities=6% Similarity=0.074 Sum_probs=35.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
-.++.|.|.+|+||||||..+..+...+.. ..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHH
Confidence 468899999999999999999887753211 2456666543 55666666543
No 317
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.67 E-value=0.0063 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+.--
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999999999854
No 318
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.66 E-value=0.0052 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999997543
No 319
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.66 E-value=0.0064 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3468999999999999999999853
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.64 E-value=0.0061 Score=46.86 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999875
No 321
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0065 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3468999999999999999999854
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.64 E-value=0.0064 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...++.|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 323
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.64 E-value=0.015 Score=47.96 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 161 LNDILGALRNP--DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 161 ~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..-+..||... +..-+.++|++|+|||++|..+.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 45567777743 3457999999999999999999985
No 324
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.62 E-value=0.0072 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.++|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998654
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.62 E-value=0.0043 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 446899999999999999999975
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.61 E-value=0.0073 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999975
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.60 E-value=0.0074 Score=46.26 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|+++|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 328
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.60 E-value=0.0069 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999999999854
No 329
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.014 Score=44.85 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 163 DILGALRNPDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.+.+ +...+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 4455 44556678899999999999999999853
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.58 E-value=0.007 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999999853
No 331
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.57 E-value=0.0072 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+|.|+|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999987653
No 332
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0099 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44688999999999999999998653
No 333
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.56 E-value=0.012 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999998754
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.55 E-value=0.01 Score=44.35 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 335
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.54 E-value=0.0072 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987654
No 336
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.0045 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-+.++|++|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999997643
No 337
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.53 E-value=0.0089 Score=50.15 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
....++|+|+|-||+||||+|..+..-...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 456789999999999999999998876653
No 338
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.51 E-value=0.01 Score=46.77 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.....|.|+|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998754
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.50 E-value=0.01 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||.+.+....
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34599999999999999999987644
No 340
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.48 E-value=0.01 Score=52.17 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.44 E-value=0.0058 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 468999999999999999999854
No 342
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.43 E-value=0.015 Score=45.38 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHHHHHHH
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
+++.+. ..+...|+++|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 334442 34455789999999999999999864
No 343
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.43 E-value=0.013 Score=43.54 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.++|.+|+|||||...+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998754
No 344
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.43 E-value=0.0096 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.42 E-value=0.0094 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 346
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.42 E-value=0.01 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043094 175 MLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.|.++|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998654
No 347
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.42 E-value=0.016 Score=51.07 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=27.2
Q ss_pred HHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 163 DILGALRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+.+.+ ...-.+++|+|+.|+|||||.+.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344443 34567999999999999999999987654
No 348
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.42 E-value=0.011 Score=50.66 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-....+++|+|++|+|||||.+.+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456899999999999999999998644
No 349
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.41 E-value=0.011 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.+...|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998763
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.41 E-value=0.0098 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988654
No 351
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.39 E-value=0.012 Score=44.30 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998753
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.39 E-value=0.015 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-.++.|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 447899999999999999999998765
No 353
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.37 E-value=0.033 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
-.++.|+|.+|+|||||++.++....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997654
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.37 E-value=0.01 Score=51.51 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.+++|+|+.|+|||||++.+....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999998744
No 355
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.37 E-value=0.011 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999998765
No 356
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.37 E-value=0.012 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.37 E-value=0.0073 Score=53.49 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.|+|.+|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999887654
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.36 E-value=0.01 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999877653
No 359
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.36 E-value=0.12 Score=46.22 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHhc-CCCceEEEEEccCCCcHHHHH-HHHHHHhccCCCCC-EEEEEEeCCCCC-HHHHHHHHHHHhCCC-------C
Q 043094 164 ILGALR-NPDISMLGICGMGGIGKTMLA-KEVARKAKNNKLFD-LVVFSEMSQSPD-IRKIQGEIADKLGLT-------F 232 (261)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~ 232 (261)
.++.+. =.+-..++|+|..|+|||+|+ ..+.+.. +-+ .++++-+.+..+ +.++.+.+...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 344444 233467899999999999996 5666542 233 467888887654 566666654431111 0
Q ss_pred CCCCchH------HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 233 REESGSG------RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 233 ~~~~~~~------~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
.+.+... ..-.+-+++. .++..||++||+
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1111111 1112344443 479999999985
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.36 E-value=0.01 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.35 E-value=0.01 Score=44.30 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998654
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.34 E-value=0.024 Score=45.57 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...|.|.|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987753
No 363
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.34 E-value=0.0092 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.-.+++|+|+.|+|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346899999999999999999985
No 364
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.34 E-value=0.013 Score=53.18 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
....+|.++|++|+||||+|+.+.....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999987664
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.33 E-value=0.011 Score=44.31 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.32 E-value=0.012 Score=44.00 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.9
Q ss_pred eEEEEEccCCCcHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~ 194 (261)
-.|.|+|.+|+|||||...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 367
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.31 E-value=0.011 Score=45.58 Aligned_cols=25 Identities=12% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999754
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.31 E-value=0.014 Score=44.15 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999998763
No 369
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.30 E-value=0.0053 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999853
No 370
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.30 E-value=0.014 Score=44.27 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999988654
No 371
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.27 E-value=0.019 Score=48.25 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+++|.+.+. -.+++++|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666554 3578999999999999999998 54
No 372
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.27 E-value=0.011 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998643
No 373
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.27 E-value=0.0054 Score=50.33 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987543
No 374
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.27 E-value=0.014 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.029 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++.|+|+.|+||||++..+.....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999966665543
No 375
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.0094 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999863
No 376
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.26 E-value=0.043 Score=58.67 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=37.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIADKL 228 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 228 (261)
+-+.++|++|+|||++|+.+.... ..+ ....++.|...+...+++.+-..+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHB
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHh
Confidence 567899999999999997776543 123 345678888888877776665554
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.26 E-value=0.011 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.-.+++|+|+.|+|||||.+.+.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 447899999999999999999998865
No 378
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.25 E-value=0.011 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998753
No 379
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.24 E-value=0.01 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
-.|.++|.+|+|||||.+.+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3579999999999999998853
No 380
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.22 E-value=0.011 Score=45.86 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=23.0
Q ss_pred hcCCCceEEEEEccCCCcHHHHHHHHHH
Q 043094 168 LRNPDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 168 l~~~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
+...+...|.|+|.+|+|||||...+.+
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3345567799999999999999999864
No 381
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.22 E-value=0.012 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.19 E-value=0.0091 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-..++|+|+.|+|||||++.+..-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999864
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.19 E-value=0.016 Score=43.36 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999997643
No 384
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.19 E-value=0.013 Score=45.03 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998654
No 385
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.18 E-value=0.014 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 386
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.18 E-value=0.014 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+|+|.|+.|+||||+++.+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.18 E-value=0.012 Score=45.20 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999998877643
No 388
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.17 E-value=0.0096 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999874
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.15 E-value=0.013 Score=44.21 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998754
No 390
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.14 E-value=0.029 Score=51.48 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.8
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+...+|.|.|++|+||||+|+.+.+...
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 34557899999999999999999988754
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.13 E-value=0.013 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.12 E-value=0.016 Score=43.28 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988543
No 393
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.11 E-value=0.0079 Score=47.10 Aligned_cols=25 Identities=12% Similarity=0.144 Sum_probs=21.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.....++|+|.+|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999998864
No 394
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.10 E-value=0.012 Score=52.67 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=50.8
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccCCCCC-EEEEEEeCCCCC-HHHHHHHHHHHhCC-------CCCCCCchH--
Q 043094 172 DISMLGICGMGGIGKTMLA-KEVARKAKNNKLFD-LVVFSEMSQSPD-IRKIQGEIADKLGL-------TFREESGSG-- 239 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~-------~~~~~~~~~-- 239 (261)
+-..++|+|.+|+|||+|| ..+.+... -+ .++++-+.+..+ +.++.+.+...=.. ...+.+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3467899999999999995 57766542 44 467888887654 45565555432100 001111111
Q ss_pred ----HHHHHHHHHh-CCCcEEEEEeCC
Q 043094 240 ----RARSLFSRLK-KEKRILVILDNI 261 (261)
Q Consensus 240 ----~~~~l~~~l~-~~kr~LlVlDdv 261 (261)
..-.+.+++. .++..||++||+
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1223444443 479999999985
No 395
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=95.09 E-value=0.031 Score=50.64 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHhcC-CCceEEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCC-CHHHHHHH
Q 043094 164 ILGALRN-PDISMLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSP-DIRKIQGE 223 (261)
Q Consensus 164 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~ 223 (261)
.++.|.. .+-..++|.|..|+|||+|+..+.+... -+.++++-+.+.. ...+++++
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 4555542 2346789999999999999999987753 3678888887763 34445444
No 396
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.08 E-value=0.015 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
+...|+++|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 397
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.07 E-value=0.014 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998643
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=44.92 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.|.|+|.+|+|||||...+.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 44578999999999999999888654
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.05 E-value=0.016 Score=51.76 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
...+|.++|++|+||||+++.+.....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999999987764
No 400
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.05 E-value=0.019 Score=46.92 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=22.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
++|+|.|-||+||||+|..+..-...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888999999999999999887653
No 401
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.05 E-value=0.014 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988744
No 402
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.03 E-value=0.014 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998654
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.018 Score=44.50 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.....|.|+|.+|+|||||...+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345678999999999999999998753
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.012 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999998743
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.02 E-value=0.015 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997543
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.02 E-value=0.015 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3568999999999999999998765
No 407
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.00 E-value=0.021 Score=43.44 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998653
No 408
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.00 E-value=0.013 Score=44.27 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998753
No 409
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.99 E-value=0.015 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4578999999999999999998654
No 410
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.99 E-value=0.015 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..|.|+|.+|+|||||...+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 411
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.99 E-value=0.015 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.|.++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988643
No 412
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.98 E-value=0.017 Score=44.13 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.....|.|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999999988644
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.97 E-value=0.024 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 161 LNDILGALRNPDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
++++..++. -.+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccc
Confidence 445666554 257899999999999999999753
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.97 E-value=0.016 Score=49.48 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 170 NPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 170 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+..+++|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999976543
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.95 E-value=0.016 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998653
No 416
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.95 E-value=0.016 Score=43.96 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998754
No 417
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.94 E-value=0.022 Score=44.22 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34678999999999999999988654
No 418
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.94 E-value=0.022 Score=44.85 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999987644
No 419
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.93 E-value=0.017 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.++|+|.|-||+||||+|..+.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 46888999999999999999987665
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.016 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999988654
No 421
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.93 E-value=0.018 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998753
No 422
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.93 E-value=0.016 Score=44.06 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998644
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.91 E-value=0.015 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998864
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.88 E-value=0.012 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.|.++|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998874
No 425
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.86 E-value=0.15 Score=45.48 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhccccccccCCcchhhchhHHHHHHHHHHHHHhhhcCCCCccccccCCCccc
Q 043094 65 IEQNVQNWLASANKAIVEAKKFVGDEATENKHSFKGFCPNLKMRRRLRKEAVRQLDAIVKLREDGRFERISHSIIPEDTL 144 (261)
Q Consensus 65 ~~~~~~~Wl~~lr~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 144 (261)
....+..|..++-++.-.+|-.+|--. . .....+..+..++..+..+++++.....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e--d--------~~~~~~~~~~~~i~~l~~~l~~~~~~~~-------------- 216 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE--D--------LPPLDDEAIISDIENIAAEISQLLATKD-------------- 216 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS--S--------SCCCCTTTHHHHHHHHHHHHHHHTTTHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--c--------CChhhHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence 356788999999999888888877321 1 0112234456667777666665432100
Q ss_pred ccCCCCcCCccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 145 LMSNKGYEDFESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 145 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..+. +. .+ -.|+|+|.+|+|||||...+....
T Consensus 217 ----------------~~~~---~r-~~-~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 217 ----------------KGEL---LR-TG-LKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ----------------HHHH---HH-HC-EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ----------------hhhh---hc-CC-CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 0001 11 12 348999999999999999998764
No 426
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.017 Score=44.61 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998654
No 427
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.83 E-value=0.017 Score=44.93 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999999998754
No 428
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.82 E-value=0.019 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
...|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998875
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043094 174 SMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..++|+|+.|+|||||.+.++.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3499999999999999999985
No 430
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.82 E-value=0.01 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..++|+|+.|+|||||++.+..-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.81 E-value=0.018 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999864
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.80 E-value=0.018 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.80 E-value=0.018 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998654
No 434
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.80 E-value=0.042 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..|+|-|..|+||||+++.+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998875
No 435
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.80 E-value=0.025 Score=43.46 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|+|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998763
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.79 E-value=0.02 Score=44.95 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998754
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.79 E-value=0.017 Score=51.20 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..-..++|+|+.|+|||||++.+.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3457899999999999999999998765
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.78 E-value=0.022 Score=44.21 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34678999999999999999998754
No 439
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.78 E-value=0.016 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
....|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999984
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.78 E-value=0.018 Score=45.25 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.77 E-value=0.019 Score=44.33 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998754
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.018 Score=45.11 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987643
No 443
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.76 E-value=0.044 Score=49.94 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHh--cCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 155 ESRISTLNDILGAL--RNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 155 ~gr~~~~~~l~~~l--~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.|.+-.+.+.... ......+|.+.|++|+||||+|+.+.....
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 33444444555544 234457899999999999999999987654
No 444
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.74 E-value=0.025 Score=45.46 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
-.|.+.|.||+||||+|-.+......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35788999999999999888877654
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.74 E-value=0.019 Score=44.03 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 446
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.73 E-value=0.058 Score=50.19 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEccCCCcHHH-HHHHHHHHhccCCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 043094 158 ISTLNDILGALRNPDISMLGICGMGGIGKTM-LAKEVARKAKNNKLFDLVVFSEMSQSPDIRKIQGEIAD 226 (261)
Q Consensus 158 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 226 (261)
+.+.+.+...|... .+..|+||||+|||+ ++..|++-.+. ...+.|+......++.++..+..
T Consensus 192 ~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHh
Confidence 34455565555533 366799999999986 45555554442 23577776666666777776643
No 447
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.73 E-value=0.02 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988643
No 448
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.027 Score=43.41 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999864
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.72 E-value=0.021 Score=45.87 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45688999999999999999998643
No 450
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.72 E-value=0.021 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999764
No 451
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.70 E-value=0.024 Score=45.17 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.....|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999998764
No 452
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.021 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999998754
No 453
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.67 E-value=0.022 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 454
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.67 E-value=0.019 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999998543
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.66 E-value=0.018 Score=52.44 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.++...
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999754
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.65 E-value=0.019 Score=51.49 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
.+++|+|+.|+|||||.+.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 8999999999999999999987543
No 457
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.65 E-value=0.024 Score=42.31 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
..+..|+|+.|+||||+..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999874
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.65 E-value=0.026 Score=43.32 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678999999999999999988643
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.63 E-value=0.019 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999853
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.62 E-value=0.026 Score=43.83 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.....|.|+|.+|+|||||...+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999754
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.61 E-value=0.017 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988644
No 462
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.61 E-value=0.027 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...+|.+.|++|+||||+|+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.60 E-value=0.012 Score=56.19 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=34.8
Q ss_pred cCCccccHHHHHHHHHHhcC-------------CCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 151 YEDFESRISTLNDILGALRN-------------PDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..++.|.+...+.|.+.+.- .....+.++|++|+||||||+.+++...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 34556766666666655431 1345688999999999999999998875
No 464
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.58 E-value=0.022 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4678999999999999999998864
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.56 E-value=0.026 Score=45.04 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAKN 199 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 199 (261)
...|.+-|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999988763
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.56 E-value=0.022 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998644
No 467
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.54 E-value=0.099 Score=42.08 Aligned_cols=41 Identities=20% Similarity=0.011 Sum_probs=28.6
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 154 FESRISTLNDILGALRNPDISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+.-+..+.+.+..++... .+.|+|+.|+|||.+|..+....
T Consensus 92 ~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344555555555555432 37889999999999999887654
No 468
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.54 E-value=0.019 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
....|.++|.+|+|||||.+.+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999997765
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.017 Score=52.60 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
No 470
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.52 E-value=0.017 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987543
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.024 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998643
No 472
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.47 E-value=0.017 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999998754
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.023 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.019 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4478999999999999999998853
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.43 E-value=0.013 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=10.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.024 Score=43.62 Aligned_cols=25 Identities=32% Similarity=0.382 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 477
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.42 E-value=0.051 Score=43.55 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=29.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccCCCCCEEEEEEeCCCCCHH
Q 043094 175 MLGICGMGGIGKTMLAKEVARKAKNNKLFDLVVFSEMSQSPDIR 218 (261)
Q Consensus 175 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 218 (261)
.|+|.|-||+||||+|..+.......+ . .+.-|......+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g-~-~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY-D-KIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC-S-CEEEEEECTTSCHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeCCCCcChH
Confidence 367799999999999999998776432 2 24555554444443
No 478
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.41 E-value=0.03 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999987654
No 479
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.40 E-value=0.029 Score=48.12 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.0
Q ss_pred hcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 168 LRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 168 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.....+++.+.|.||+||||+|..+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3355568999999999999999998886554
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.36 E-value=0.023 Score=52.50 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
-.+++|+|+.|+|||||++.++...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999754
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.36 E-value=0.025 Score=44.24 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
..-.|.|+|.+|+|||||...+.+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999988643
No 482
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.35 E-value=0.026 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3467899999999999999998754
No 483
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.35 E-value=0.026 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999998753
No 484
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.33 E-value=0.029 Score=45.63 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999997543
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.024 Score=52.31 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043094 174 SMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 174 ~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.+++|+|+.|+|||||++.++.-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998644
No 486
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.27 E-value=0.08 Score=45.10 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.1
Q ss_pred hcCCCceEEEEEccCCCcHHHHHHHHHHHhc
Q 043094 168 LRNPDISMLGICGMGGIGKTMLAKEVARKAK 198 (261)
Q Consensus 168 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 198 (261)
+.....+++.+.|.||+||||+|..+.....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3345567888899999999999999987664
No 487
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.27 E-value=0.021 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999854
No 488
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.26 E-value=0.028 Score=44.32 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
.-.|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988754
No 489
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.26 E-value=0.026 Score=44.51 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
....|.|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998754
No 490
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.24 E-value=0.061 Score=43.94 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
+...|+++|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999998644
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.025 Score=52.21 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3468999999999999999999853
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.027 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVA 194 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~ 194 (261)
....|.|+|.+|+|||||...+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999886
No 493
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.21 E-value=0.026 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
...|.|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999987543
No 494
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.21 E-value=0.062 Score=44.07 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|.++|.+|+|||||...++...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998644
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.17 E-value=0.037 Score=42.36 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHH
Q 043094 171 PDISMLGICGMGGIGKTMLAKEVAR 195 (261)
Q Consensus 171 ~~~~vi~I~G~~G~GKTtLa~~v~~ 195 (261)
.+...|.|+|.+|+|||||...+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4567799999999999999999854
No 496
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.15 E-value=0.022 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043094 176 LGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 176 i~I~G~~G~GKTtLa~~v~~~ 196 (261)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999864
No 497
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.12 E-value=0.029 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-..++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999854
No 498
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.02 E-value=0.061 Score=44.52 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARKA 197 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 197 (261)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999997543
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.02 E-value=0.03 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043094 172 DISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 172 ~~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
.-.+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999754
No 500
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.96 E-value=0.033 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043094 173 ISMLGICGMGGIGKTMLAKEVARK 196 (261)
Q Consensus 173 ~~vi~I~G~~G~GKTtLa~~v~~~ 196 (261)
...|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998754
Done!