BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043096
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
pdb|4DMB|B Chain B, X-Ray Structure Of Human Hepatitus C Virus
Ns5a-Transactivated Protein 2 At The Resolution 1.9a,
Northeast Structural Genomics Consortium (Nesg) Target
Hr6723
Length = 204
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 6/161 (3%)
Query: 86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIV 145
+ FL L LK R GW+ ++ PES++DH YR A+ A + D ++++RC+++A+V
Sbjct: 18 LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHXYRXAVXAXVIKD-DRLNKDRCVRLALV 76
Query: 146 HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIE 205
HD AE IVGDI P+D +PKE K R E+EA ++ ++L +R +E+ ELW EYE +S E
Sbjct: 77 HDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLR-KELYELWEEYETQSSAE 135
Query: 206 ANLVKDFDKVEMILQALEYE-MEH--GKVLDEFFLSTAGKI 243
A VK D+ E ILQA EYE +EH G+ L +F+ STAGK
Sbjct: 136 AKFVKQLDQCEXILQASEYEDLEHKPGR-LQDFYDSTAGKF 175
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|B Chain B, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|C Chain C, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|D Chain D, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|E Chain E, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
pdb|2CQZ|F Chain F, Crystal Structure Of Ph0347 Protein From Pyrococcus
Horikoshii Ot3
Length = 177
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Query: 86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCI 140
I+ + L +LK R GW+ G++ PESIADH + +A + L+ D+ +D E+ +
Sbjct: 5 IEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDVEKAL 64
Query: 141 KIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYEN 200
K+AIVHD+AEAI+ DI S +E + + EAL KV E EL+ EY+
Sbjct: 65 KMAIVHDLAEAIITDIPLS---AQEFVDKDKAEALV-FKKVFP------EFYELYREYQE 114
Query: 201 NASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFF 236
+S EA LV+ DK++MILQA +YE+ K LDEF+
Sbjct: 115 CSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFW 150
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|B Chain B, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|C Chain C, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|D Chain D, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|E Chain E, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|F Chain F, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
Length = 184
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 85 AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGD---IPGV--DRERC 139
+ID + L LK R GW+ G+ PES+ADH YR+A + L+ + GV D E+
Sbjct: 9 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKA 68
Query: 140 IKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYE 199
+KIAI+HD+ EAI+ D+ P K E +AL ++ E EL+ EY
Sbjct: 69 LKIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDVLP---------EYTELFEEYS 118
Query: 200 NNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFF 236
++E LVK DK++MI+QA EYE+ K L EF+
Sbjct: 119 KALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFW 155
>pdb|1YOY|A Chain A, Predicted Coding Region Af1432 From Archaeoglobus Fulgidus
Length = 175
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 20/145 (13%)
Query: 86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIK---I 142
+ F+ SLK T R GW+ GI+ PES+A+H +R A++A I G E+ K
Sbjct: 13 VKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHSFRAAIIAFILALKSGESVEKACKAATA 72
Query: 143 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNA 202
A+ HD+ EA D+ + + S E+ G R E++ W E + +
Sbjct: 73 ALFHDLHEARTMDLHK---IARRYVSCDEE------------GAREEQLS--WMESKPDF 115
Query: 203 SIEANLVKDFDKVEMILQALEYEME 227
S V D DK+E+ Q +EY +
Sbjct: 116 SDVEVYVSDADKLELAFQGVEYSQQ 140
>pdb|1YNB|A Chain A, Crystal Structure Of Genomics Apc5600
pdb|1YNB|B Chain B, Crystal Structure Of Genomics Apc5600
pdb|1YNB|C Chain C, Crystal Structure Of Genomics Apc5600
Length = 173
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 20/145 (13%)
Query: 86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIK---I 142
+ F+ SLK T R GW+ GI+ PES+A+H +R A++A I G E+ K
Sbjct: 11 VKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATA 70
Query: 143 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNA 202
A+ HD+ EA D+ + + S E+ G R E++ W E + +
Sbjct: 71 ALFHDLHEARTMDL---HKIARRYVSCDEE------------GAREEQLS--WMESKPDF 113
Query: 203 SIEANLVKDFDKVEMILQALEYEME 227
S V D DK+E+ Q +EY +
Sbjct: 114 SDVEVYVSDADKLELAFQGVEYSQQ 138
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
pdb|3KH1|B Chain B, Crystal Structure Of Predicted Metal-Dependent
Phosphohydrolase (Zp_00055740.2) From Magnetospirillum
Magnetotacticum Ms-1 At 1.37 A Resolution
Length = 200
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 88 FLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIP--GVDRERCIKIAIV 145
F+ LKT R+ + + E+ A+H + +A A + + V R + ++
Sbjct: 16 FVVEIDKLKTILRQTLLTDSSRR-ENDAEHSWHIATXAFLLAEYADEAVQIGRVARXLLI 74
Query: 146 HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIE 205
HDI E GD D E K E++A + +L +A E LW EYE + +
Sbjct: 75 HDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPD-QAAEYSALWQEYEARETAD 133
Query: 206 ANLVKDFDKVEMILQALEYE 225
A D+++ +L E E
Sbjct: 134 ARFADALDRLQPLLHNFETE 153
>pdb|2PAR|A Chain A, Crystal Structure Of The 5'-Deoxynucleotidase Yfbr Mutant
E72a Complexed With Co(2+) And Tmp
pdb|2PAR|B Chain B, Crystal Structure Of The 5'-Deoxynucleotidase Yfbr Mutant
E72a Complexed With Co(2+) And Tmp
pdb|2PAU|A Chain A, Crystal Structure Of The 5'-Deoxynucleotidase Yfbr Mutant
E72a Complexed With Co(2+) And Damp
pdb|2PAU|B Chain B, Crystal Structure Of The 5'-Deoxynucleotidase Yfbr Mutant
E72a Complexed With Co(2+) And Damp
Length = 201
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD + + GD+ TP K
Sbjct: 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASAVLTGDLPTPV----K 85
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 86 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 145
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 146 KCLE-ELAAGN--NEFLLA 161
>pdb|3I09|A Chain A, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
pdb|3I09|B Chain B, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
Length = 375
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 153 VGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDF 212
+G IT G+ ++ + EA+ GG + + I+ ++A+++N A I A+ +++
Sbjct: 7 IGFITDXSGLYADIDGQGGLEAIKXAVADFGGKVNGKPIEVVYADHQNKADIAASKAREW 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,636,798
Number of Sequences: 62578
Number of extensions: 243318
Number of successful extensions: 598
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 13
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)