BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043096
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1
Length = 200
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 108/160 (67%), Gaps = 4/160 (2%)
Query: 86 IDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIV 145
+ F+ L LK R GW+ IK PES++DHMYRM++MAL DI V++ERC+K+A+V
Sbjct: 5 LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALV 63
Query: 146 HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIE 205
HD+AE IVGDI P+D V K K R E++A+ + +L G+R +EI LW EYE +S E
Sbjct: 64 HDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPE 122
Query: 206 ANLVKDFDKVEMILQALEYEMEHGK--VLDEFFLSTAGKI 243
A LVK+ D +EMI+QA EYE GK L EFF+ST GK
Sbjct: 123 AKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1
Length = 198
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 113/169 (66%), Gaps = 4/169 (2%)
Query: 78 SSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRE 137
+++ + S + FL LKTT R GW+ HGI+ PESIADHMYRM ++ ++ D P +++E
Sbjct: 2 NAAKSLSIVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKE 60
Query: 138 RCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKV---LGGGMRAEEIQEL 194
RC+KIA+VHD+AE+IVGDITP + V KE K RME EA+ + + L ++AEEI+EL
Sbjct: 61 RCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKEL 120
Query: 195 WAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKI 243
+ EYE+ ++ EA VKD DK EMI Q EYE + D + AGK+
Sbjct: 121 FLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQFTWAGKL 169
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=hddc2 PE=3 SV=1
Length = 190
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 113/173 (65%), Gaps = 13/173 (7%)
Query: 83 SSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMA-------LIAGDIPGVD 135
S+ ++F +C LKT KR GW+NHG++ PES++DHMYRMA+M LI D +D
Sbjct: 2 SNYLEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEID 61
Query: 136 RERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELW 195
+ + IK+A+VHD+ E++VGD TP D + KE K ++E+ A+ E+ L G + +EI +LW
Sbjct: 62 KMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTLSGEV-GKEIFDLW 120
Query: 196 AEYENNASIEANLVKDFDKVEMILQALEYE-----MEHGKVLDEFFLSTAGKI 243
EYE+ + EA LVKDFDK EMILQA EYE +E+ L FF ST GK
Sbjct: 121 QEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKF 173
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1
Length = 201
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 73 APIGSSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIP 132
A GS SS+ S + F+ L LK R GWI ++ PES++DHMYRMA+MA++ D
Sbjct: 2 AAAGSCSSAGKSLLQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTED-R 60
Query: 133 GVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQ 192
++++RCI++A+VHD+AE IVGDI P+D + KE K R E+ A+ + ++L ++ E+
Sbjct: 61 KLNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVY 119
Query: 193 ELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGK--VLDEFFLSTAGKI 243
+LW EYE+ + EA VK+ D+ EMILQALEYE + L +F+ STAGK
Sbjct: 120 DLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKF 172
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1
Length = 238
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 6/159 (3%)
Query: 88 FLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHD 147
FL + LK +R G+++ GIK ESI+DHMYR++++ ++ D V+R++C++IA+VHD
Sbjct: 51 FLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHD 109
Query: 148 IAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL---GGGMRAEEIQELWAEYENNASI 204
IAE++VGDITP D + KE K R E E + +C L + A+EI + W YEN S+
Sbjct: 110 IAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSL 169
Query: 205 EANLVKDFDKVEMILQALEYEMEHG--KVLDEFFLSTAG 241
EA VKD DK EM++Q EYE E+ K D+FF + A
Sbjct: 170 EARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVAS 208
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1
Length = 215
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 6/154 (3%)
Query: 88 FLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHD 147
FL + LKT +R GW++HGI ESI+DHMYRM L ++ D VDR +CI+IA+VHD
Sbjct: 32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHD 90
Query: 148 IAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL---GGGMRAEEIQELWAEYENNASI 204
AE++VGDITP+D + KE K R E E + +C+ + + EI + W YE +
Sbjct: 91 FAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCL 150
Query: 205 EANLVKDFDKVEMILQALEYEMEHG--KVLDEFF 236
E VKD DK EM++Q EYE ++ K L +F
Sbjct: 151 EGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL 184
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1
Length = 204
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 115/169 (68%), Gaps = 6/169 (3%)
Query: 78 SSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRE 137
S S + FL L LK R GW+ ++ PES++DHMYRMA+MA++ D ++++
Sbjct: 10 SGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKD 68
Query: 138 RCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAE 197
RC+++A+VHD+AE IVGDI P+D +PKE K R E+EA+ ++ ++L +R +E+ ELW E
Sbjct: 69 RCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEE 127
Query: 198 YENNASIEANLVKDFDKVEMILQALEYE-MEH--GKVLDEFFLSTAGKI 243
YE +S EA VK D+ EMILQA EYE +EH G+ L +F+ STAGK
Sbjct: 128 YETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGR-LQDFYDSTAGKF 175
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1
Length = 199
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 114/169 (67%), Gaps = 4/169 (2%)
Query: 77 SSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDR 136
+SS S + + FL L LK R GW+ ++ PES++DHMYRMA+MA++ D +++
Sbjct: 4 ASSGSGAGLLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNK 62
Query: 137 ERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWA 196
+RCI++A+VHD+AE IVGDI P+D +PKE K R E+EA+ ++ ++L +R +E+ ELW
Sbjct: 63 DRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWE 121
Query: 197 EYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKI 243
EYE +S EA VK D+ EMILQA EYE K L +F+ STAGK
Sbjct: 122 EYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1
Length = 205
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 5/176 (2%)
Query: 71 SEAPIGS-SSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAG 129
S +P+ + S + + FL L LK R GW+ ++ PES++DHMYRMA+MAL+
Sbjct: 3 SASPVATMSGRGARNLLQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTK 62
Query: 130 DIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAE 189
D ++++RC+++A+VHD+AE IVGDI P+D VP+E K R E+EA+ ++ ++L ++ +
Sbjct: 63 D-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-K 120
Query: 190 EIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKI 243
E+ ELW EYE +S EA VK D+ EMILQA EYE K L +F+ STAGK
Sbjct: 121 ELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176
>sp|A7MH33|Y928_CROS8 UPF0207 protein ESA_00928 OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=ESA_00928 PE=3 SV=1
Length = 199
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAVIKNRKFQGNVNPERIALLAMYHDASEVLTGDLPTPVKYFNS 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWA---EYENNASIEANLVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+Q+++A + + E +LVK D + L+
Sbjct: 88 QIAH--EYKAIEKIAQQKLIAMVPEELQDIFAPLLDEHHYTEDEKSLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLSTA 240
LE E+ G +EF L+ +
Sbjct: 146 LE-ELSAGN--NEFLLAKS 161
>sp|Q1R9C4|YFBR_ECOUT UPF0207 protein YfbR OS=Escherichia coli (strain UTI89 / UPEC)
GN=yfbR PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|Q8FFJ5|YFBR_ECOL6 5'-nucleotidase YfbR OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|Q0TFF5|YFBR_ECOL5 UPF0207 protein YfbR OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|A1ADE0|YFBR_ECOK1 UPF0207 protein YfbR OS=Escherichia coli O1:K1 / APEC GN=yfbR PE=3
SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7MXX0|YFBR_ECO81 UPF0207 protein YfbR OS=Escherichia coli O81 (strain ED1a) GN=yfbR
PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7MG55|YFBR_ECO45 UPF0207 protein YfbR OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+Q+++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7UFU9|YFBR_ECO27 UPF0207 protein YfbR OS=Escherichia coli O127:H6 (strain E2348/69 /
EPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNS 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+Q+++A + + E +LVK D + L+
Sbjct: 88 QIAK--EYKAIEKIAQQKLVDMVPEELQDIFAPLIDEHAYSDEEKSLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLS 238
LE E+ G +EF L+
Sbjct: 146 LE-ELAAGN--NEFLLA 159
>sp|Q87R72|Y926_VIBPA UPF0207 protein VP0926 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=VP0926 PE=3 SV=2
Length = 194
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 110 GPESIADHMYRMAL----MALIAGDIPG--VDRERCIKIAIVHDIAEAIVGDI-TPSDGV 162
PE++++H ++A +ALI G ++ ER +A+ HD +E + GD+ TP
Sbjct: 26 SPENVSEHSLQVAFVAHALALIKNKKFGGTLNPERIALLAMYHDSSEVLTGDLPTPVKYY 85
Query: 163 PKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEY---ENNASIEANLVKDFDKVEMIL 219
E+ ++ K+L M EE QE +A + ++ ++ +VK D + L
Sbjct: 86 NPEIAKEYKKIEAAAEHKLL--SMLPEEFQEDFAPFLLSHSSHEEDSQIVKQADSICAYL 143
Query: 220 QALE 223
+ LE
Sbjct: 144 KCLE 147
>sp|Q7MMF9|Y1113_VIBVY UPF0207 protein VV1113 OS=Vibrio vulnificus (strain YJ016)
GN=VV1113 PE=3 SV=2
Length = 194
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 112 ESIADHMYRMAL----MALIAGDIPG--VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A +ALI G ++ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAFVAHALALIKNKKFGGHINAERVAVLAMYHDSSEVLTGDLPTPVKYYNP 87
Query: 165 EVKSRMEQ-EALNEMCKVLGGGMRAEEIQELWAEY---ENNASIEANLVKDFDKVEMILQ 220
E+ ++ EA E K+L M EE QE + + + + EA +VK D + L+
Sbjct: 88 EIAKEYKKIEAAAEQ-KLL--SMLPEEFQEDFRPFVISQQTSEEEAQIVKQADSICAYLK 144
Query: 221 ALE 223
LE
Sbjct: 145 CLE 147
>sp|Q3YZR9|YFBR_SHISS UPF0207 protein YfbR OS=Shigella sonnei (strain Ss046) GN=yfbR PE=3
SV=1
Length = 199
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNS 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+++++A + + E +LVK D + L+
Sbjct: 88 QIAQ--EYKAIEKIAQQKLVNMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLS 238
LE E+ G +EF L+
Sbjct: 146 LE-ELAAGN--NEFLLA 159
>sp|Q32DP8|YFBR_SHIDS UPF0207 protein YfbR OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|P76491|YFBR_ECOLI 5'-nucleotidase YfbR OS=Escherichia coli (strain K12) GN=yfbR PE=1
SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B1X903|YFBR_ECODH UPF0207 protein YfbR OS=Escherichia coli (strain K12 / DH10B)
GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|C4ZVI4|YFBR_ECOBW UPF0207 protein YfbR OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B1LLP5|YFBR_ECOSM UPF0207 protein YfbR OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B6I7L3|YFBR_ECOSE UPF0207 protein YfbR OS=Escherichia coli (strain SE11) GN=yfbR PE=3
SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7N5Q3|YFBR_ECOLU UPF0207 protein YfbR OS=Escherichia coli O17:K52:H18 (strain UMN026
/ ExPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B1IXQ1|YFBR_ECOLC UPF0207 protein YfbR OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|A8A2G0|YFBR_ECOHS UPF0207 protein YfbR OS=Escherichia coli O9:H4 (strain HS) GN=yfbR
PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7M5X0|YFBR_ECO8A UPF0207 protein YfbR OS=Escherichia coli O8 (strain IAI1) GN=yfbR
PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7NNX0|YFBR_ECO7I UPF0207 protein YfbR OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B5YXT1|YFBR_ECO5E UPF0207 protein YfbR OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|Q8XCV3|YFBR_ECO57 5'-nucleotidase YfbR OS=Escherichia coli O157:H7 GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B7LBE5|YFBR_ECO55 UPF0207 protein YfbR OS=Escherichia coli (strain 55989 / EAEC)
GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|B2TW72|YFBR_SHIB3 UPF0207 protein YfbR OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|A7ZPA5|YFBR_ECO24 UPF0207 protein YfbR OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=yfbR PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M EE+++++A + + E +LVK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELAAGN--NEFLLA 159
>sp|A4WCS0|Y2835_ENT38 UPF0207 protein Ent638_2835 OS=Enterobacter sp. (strain 638)
GN=Ent638_2835 PE=3 SV=1
Length = 199
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFNGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNS 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEY--ENNASIEAN-LVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+++++A E+ S E LVK D + L+
Sbjct: 88 QIAQ--EYKAIEKIAQQKLVDMVPEELRDIFAALIDEHQCSEEERLLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLSTA 240
LE E+ G +EF L+ +
Sbjct: 146 LE-ELSAGN--NEFLLAKS 161
>sp|Q83QS4|YFBR_SHIFL UPF0207 protein YfbR OS=Shigella flexneri GN=yfbR PE=3 SV=1
Length = 199
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNA 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+++++A + + E +LVK D + L+
Sbjct: 88 QIAQ--EYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLS 238
LE E+ G +EF L+
Sbjct: 146 LE-ELAAGN--NEFLLA 159
>sp|Q0T2J6|YFBR_SHIF8 UPF0207 protein YfbR OS=Shigella flexneri serotype 5b (strain 8401)
GN=yfbR PE=3 SV=1
Length = 199
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNA 87
Query: 165 EVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMILQA 221
++ E +A+ ++ + M EE+++++A + + E +LVK D + L+
Sbjct: 88 QIAQ--EYKAIEKIAQQKLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKC 145
Query: 222 LEYEMEHGKVLDEFFLS 238
LE E+ G +EF L+
Sbjct: 146 LE-ELAAGN--NEFLLA 159
>sp|Q3A9J4|GRDB_CARHZ Glycine reductase complex component B subunit gamma
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=grdB PE=3 SV=2
Length = 435
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 19/234 (8%)
Query: 24 SPAFFYNR--TSSRPVFSTDAPNLRLVSVRARKPGSDGFG-YKKSVNL-TDSEAPIGSSS 79
PAF R T+ V NL + +V P + G YKKSV + +++ IG +
Sbjct: 87 GPAFNAGRYGTACGAVAEAVVKNLGIPAVTGMYPENPGVEMYKKSVYIIATADSAIGMRN 146
Query: 80 SSTSSAIDFLTLC--HSLKTTKRKGWINHGIKGPESIADHMYRMALMALIA--------G 129
+ A L L + T +++G+I GI+ + + A+ LIA
Sbjct: 147 AIPKMAALGLKLLKKEEIGTPEQEGYIARGIRKNYFAEERGAKRAVDMLIAKIKGENFTT 206
Query: 130 DIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAE 189
++P +R + D+++A + +T VPK R+E + ++ K G++
Sbjct: 207 ELPMPAFDRVPPNPAIKDLSKATIALVTSGGIVPKGNPDRIESSSASKFGKYSIAGVKDL 266
Query: 190 EIQELWAEYENNASIEANLVKDFDKVEM--ILQALEYEMEHGKVLDEFFLSTAG 241
+ + AN +D D+V +L+ +E E + GK L +++ +T G
Sbjct: 267 TSDTFETAHGGYDPVYAN--QDADRVLPVDVLREMEAEGKIGK-LHDYYYATVG 317
>sp|Q59465|HMCT_HELPY Cadmium, zinc and cobalt-transporting ATPase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=cadA PE=1 SV=2
Length = 686
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 145 VHDIAEAIVGDITPSDGVPKEVKSRMEQEAL---------NEMCKVLGGGMRAEEIQELW 195
V+DI VG+ P DGV + +S +++ AL +E KVLGG + + + E+
Sbjct: 209 VNDIVVVKVGEKVPVDGVVVKGESLLDERALSGESMPVNVSENSKVLGGSLNLKAVLEIQ 268
Query: 196 AEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEF 235
E S A + V+++ QA + E K + +F
Sbjct: 269 VEKMYKDSSIAKV------VDLVQQATNEKSETEKFITKF 302
>sp|A8ADU7|Y504_CITK8 UPF0207 protein CKO_00504 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_00504 PE=3 SV=1
Length = 199
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 112 ESIADHMYRMALMALIAGDIPG------VDRERCIKIAIVHDIAEAIVGDI-TPSDGVPK 164
E++++H ++A++A I V+ ER +A+ HD +E + GD+ TP K
Sbjct: 28 ENVSEHSLQVAMVAHALAAIKNRKFGGQVNAERIALLAMYHDASEVLTGDLPTPV----K 83
Query: 165 EVKSRMEQE--ALNEMCKVLGGGMRAEEIQELWAEYENNASI---EANLVKDFDKVEMIL 219
S++ QE A+ ++ + M +E+++++A + + E ++VK D + L
Sbjct: 84 YFNSQIAQEYKAIEKIAQQKLVDMVPDELRDIFAPLIDEHAYSEEEKSVVKQADALCAYL 143
Query: 220 QALEYEMEHGKVLDEFFLS 238
+ LE E+ G +EF L+
Sbjct: 144 KCLE-ELSAGN--NEFLLA 159
>sp|B2V5N9|COAX_SULSY Type III pantothenate kinase OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=coaX PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 201 NASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLS 238
N + E +KD DK+E L+++ +HGK +D++ ++
Sbjct: 9 NTTTEIGYIKDLDKIE----TLKFKTDHGKTIDDWLIN 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,697,498
Number of Sequences: 539616
Number of extensions: 3319455
Number of successful extensions: 10396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 10363
Number of HSP's gapped (non-prelim): 72
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)