Query 043096
Match_columns 243
No_of_seqs 128 out of 841
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3197 Predicted hydrolases o 100.0 1.9E-52 4.1E-57 359.8 18.1 163 79-243 21-185 (210)
2 PF13023 HD_3: HD domain; PDB: 100.0 6.9E-44 1.5E-48 301.3 6.8 144 92-236 1-146 (165)
3 PRK03826 5'-nucleotidase; Prov 100.0 1.8E-39 4E-44 282.3 13.4 149 85-237 2-160 (195)
4 COG1896 Predicted hydrolases o 100.0 3.1E-35 6.8E-40 255.3 13.6 154 84-239 4-164 (193)
5 PF12917 HD_2: HD containing h 99.9 1.7E-25 3.8E-30 196.9 13.9 149 85-237 3-163 (215)
6 cd00077 HDc Metal dependent ph 98.1 1.7E-06 3.6E-11 65.5 2.0 46 112-157 1-49 (145)
7 smart00471 HDc Metal dependent 97.9 2.8E-05 6.1E-10 57.8 5.5 108 111-223 2-120 (124)
8 PF01966 HD: HD domain; Inter 97.7 6.7E-06 1.5E-10 62.3 0.2 42 114-155 1-44 (122)
9 PRK10119 putative hydrolase; P 97.7 0.00027 5.8E-09 63.7 10.0 109 115-230 27-149 (231)
10 TIGR03401 cyanamide_fam HD dom 97.3 0.0027 5.9E-08 56.9 10.9 102 112-219 54-167 (228)
11 TIGR00295 conserved hypothetic 97.3 0.0013 2.7E-08 55.8 7.8 42 111-152 11-57 (164)
12 PRK12705 hypothetical protein; 97.1 0.0012 2.6E-08 65.6 7.2 93 111-217 321-416 (508)
13 COG1418 Predicted HD superfami 96.9 0.0028 6.1E-08 56.5 6.8 43 110-152 33-75 (222)
14 PRK13480 3'-5' exoribonuclease 96.4 0.036 7.9E-07 52.0 11.1 112 111-226 157-287 (314)
15 PRK12703 tRNA 2'-O-methylase; 96.4 0.016 3.5E-07 55.0 8.8 41 111-151 185-225 (339)
16 PRK12704 phosphodiesterase; Pr 96.4 0.01 2.2E-07 59.1 7.4 94 110-217 332-428 (520)
17 TIGR03319 YmdA_YtgF conserved 95.7 0.049 1.1E-06 54.3 8.9 94 111-218 327-423 (514)
18 TIGR00277 HDIG uncharacterized 95.7 0.012 2.7E-07 41.7 3.3 42 112-153 3-44 (80)
19 COG2206 c-di-GMP phosphodieste 95.6 0.022 4.8E-07 53.5 5.6 110 111-225 146-279 (344)
20 PRK00106 hypothetical protein; 95.0 0.17 3.7E-06 50.9 9.9 107 88-217 334-443 (535)
21 TIGR00488 putative HD superfam 94.9 0.025 5.5E-07 47.1 3.3 41 111-151 6-46 (158)
22 PRK07152 nadD putative nicotin 92.8 0.062 1.3E-06 50.3 2.0 54 97-152 182-235 (342)
23 COG1713 Predicted HD superfami 89.4 0.35 7.6E-06 42.7 3.2 36 114-149 18-53 (187)
24 COG4341 Predicted HD phosphohy 82.8 4.7 0.0001 35.4 6.6 58 100-163 18-77 (186)
25 PF13328 HD_4: HD domain; PDB: 81.4 16 0.00034 30.0 9.1 35 111-150 17-51 (153)
26 PF08668 HDOD: HDOD domain; I 81.1 3 6.4E-05 35.1 4.8 45 110-154 91-136 (196)
27 TIGR03760 ICE_TraI_Pfluor inte 76.6 3.8 8.3E-05 36.6 4.3 42 111-152 65-121 (218)
28 PRK01286 deoxyguanosinetriphos 70.9 3.3 7.2E-05 39.5 2.6 109 112-227 61-190 (336)
29 TIGR03276 Phn-HD phosphonate d 65.3 17 0.00037 31.8 5.7 37 111-152 23-59 (179)
30 PRK03007 deoxyguanosinetriphos 62.2 6.2 0.00014 38.8 2.7 39 111-149 68-106 (428)
31 TIGR01596 cas3_HD CRISPR-assoc 52.2 8.3 0.00018 31.5 1.5 37 115-151 2-46 (177)
32 TIGR01353 dGTP_triPase deoxygu 51.9 9.6 0.00021 36.8 2.0 39 111-149 36-85 (381)
33 TIGR00691 spoT_relA (p)ppGpp s 50.4 47 0.001 34.5 6.9 34 112-150 18-51 (683)
34 COG1639 Predicted signal trans 48.0 21 0.00046 33.6 3.6 49 110-158 113-163 (289)
35 KOG1157 Predicted guanosine po 47.4 35 0.00076 34.1 5.1 62 78-151 70-132 (543)
36 COG0751 GlyS Glycyl-tRNA synth 47.1 1.3E+02 0.0028 31.7 9.3 96 112-221 360-465 (691)
37 PRK11092 bifunctional (p)ppGpp 46.1 30 0.00065 36.2 4.7 34 112-150 43-76 (702)
38 COG0232 Dgt dGTP triphosphohyd 45.7 15 0.00031 36.3 2.2 60 89-149 42-109 (412)
39 PRK13298 tRNA CCA-pyrophosphor 43.8 2.4E+02 0.0053 27.8 10.3 37 111-152 226-262 (417)
40 PF08609 Fes1: Nucleotide exch 43.0 1.6E+02 0.0034 22.9 7.5 84 135-223 4-87 (92)
41 PF14244 UBN2_3: gag-polypepti 42.6 1E+02 0.0023 25.1 6.6 96 137-238 22-127 (152)
42 PRK01233 glyS glycyl-tRNA synt 39.8 29 0.00063 36.2 3.4 98 111-222 355-462 (682)
43 COG3481 Predicted HD-superfami 39.2 39 0.00085 31.8 3.9 42 111-152 138-181 (287)
44 COG1480 Predicted membrane-ass 36.3 1.3E+02 0.0028 31.8 7.4 46 116-161 492-546 (700)
45 TIGR01693 UTase_glnD [Protein- 34.9 78 0.0017 33.5 5.7 43 111-153 426-482 (850)
46 COG2844 GlnD UTP:GlnB (protein 33.8 62 0.0013 34.8 4.7 77 82-158 410-505 (867)
47 PF02092 tRNA_synt_2f: Glycyl- 33.5 2.2E+02 0.0047 29.2 8.4 98 111-222 352-460 (548)
48 TIGR01807 CM_P2 chorismate mut 28.8 2.3E+02 0.0051 20.6 6.2 50 141-197 22-74 (76)
49 PRK01096 deoxyguanosinetriphos 26.2 32 0.00069 34.0 1.1 39 111-149 59-112 (440)
50 PRK05318 deoxyguanosinetriphos 26.0 49 0.0011 32.6 2.3 39 111-149 56-105 (432)
51 COG0317 SpoT Guanosine polypho 21.3 1.2E+02 0.0025 32.1 4.1 35 111-150 46-80 (701)
52 TIGR02621 cas3_GSU0051 CRISPR- 20.8 87 0.0019 33.7 3.1 41 110-150 672-714 (844)
No 1
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-52 Score=359.76 Aligned_cols=163 Identities=62% Similarity=1.006 Sum_probs=156.0
Q ss_pred CCChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096 79 SSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITP 158 (243)
Q Consensus 79 ~s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~ 158 (243)
++...++++||..+++||+++|+||+.+||+.|||||+|||||+++||++.+ .+||.+||++|||+||++|+++|||+|
T Consensus 21 s~~~~sil~FL~l~~~LK~~~RTGWv~~gv~~pESIadHMYRM~llaml~~d-~~vnr~rC~kiAlVHD~AEslVgditP 99 (210)
T KOG3197|consen 21 SSSSKSILQFLDLLGRLKTTPRTGWVKRGVNEPESIADHMYRMALLAMLIKD-PGVNRERCMKIALVHDIAESLVGDITP 99 (210)
T ss_pred cCCchHHHHHHHHHHHhccCCCccccccCCCCcchHHHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344489999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcC--ccchhhh
Q 043096 159 SDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHG--KVLDEFF 236 (243)
Q Consensus 159 ~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~--~~l~ef~ 236 (243)
.+++++++|+++|-+|++.|+++|+++.+++|+.+||.|||+++|+||++||++||++|++||+|||+++| ++|++||
T Consensus 100 ~~~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~ 179 (210)
T KOG3197|consen 100 SDGVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF 179 (210)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999875 4799999
Q ss_pred hhccCCC
Q 043096 237 LSTAGKI 243 (243)
Q Consensus 237 ~s~~g~~ 243 (243)
||+|+|
T Consensus 180 -st~g~~ 185 (210)
T KOG3197|consen 180 -STVGKF 185 (210)
T ss_pred -Hhcccc
Confidence 899987
No 2
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=100.00 E-value=6.9e-44 Score=301.31 Aligned_cols=144 Identities=45% Similarity=0.738 Sum_probs=123.5
Q ss_pred HhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHH
Q 043096 92 CHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPG--VDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSR 169 (243)
Q Consensus 92 ~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~--vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~ 169 (243)
+++||+++|+||..+|++++||||||||+||++|++++...+ +|.+||++|||+||++|++||||+++++..+..|+.
T Consensus 1 ~~~Lk~i~R~gw~~~g~~~~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~ 80 (165)
T PF13023_consen 1 VDRLKFIKRTGWVLRGRPRPESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEE 80 (165)
T ss_dssp HHHCCCSB-HHHHHCTSSSG-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHH
T ss_pred CcccCcccCCCcccCCCCCCccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHH
Confidence 589999999999999988899999999999999999987655 999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhh
Q 043096 170 MEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFF 236 (243)
Q Consensus 170 ~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~ 236 (243)
+|++|+++++++||+++ +.+|..||.|||+++|+||++||++|||++++||++|+..++..++.++
T Consensus 81 ~E~~a~~~l~~~Lp~~l-~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~lq~~~~~~~~~~~~~~~~ 146 (165)
T PF13023_consen 81 REEAAIEELFSLLPEEL-QEELKELWEEFEEGESPEAKLVKAADKLEPLLQALEYEGDGWSEFEIFL 146 (165)
T ss_dssp HHHHHHHHHCTTSSCHH-HHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHCCT-T--TTT
T ss_pred HHHHHHHHHHHHhhhhH-HHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHHHHHHHccccchHHHHHH
Confidence 99999999999999875 5899999999999999999999999999999999999998877653333
No 3
>PRK03826 5'-nucleotidase; Provisional
Probab=100.00 E-value=1.8e-39 Score=282.30 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=132.2
Q ss_pred HHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC------CCCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096 85 AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI------PGVDRERCIKIAIVHDIAEAIVGDITP 158 (243)
Q Consensus 85 ~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~------~~vD~~KvlkmALiHDL~Ea~tGDI~~ 158 (243)
+.+|+.++++||+|+||||+. ++ ++||||||||+||+||++|+.+ .++|++||++|||+||++|++||||++
T Consensus 2 ~~~F~~~~~rLK~i~Rw~~~~-~~-~~EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~t 79 (195)
T PRK03826 2 QSHFFAHLSRLKLINRWPLMR-NV-RTENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPT 79 (195)
T ss_pred hHHHHHHHHhhccccccCCCC-CC-CCCccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCccc
Confidence 478999999999999999985 55 7999999999999999999853 369999999999999999999999998
Q ss_pred CCC----CChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchh
Q 043096 159 SDG----VPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDE 234 (243)
Q Consensus 159 ~d~----~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~e 234 (243)
|.+ ...+.+++.|++|.++|+++||+++ .++|..+|.|++ .+|+||++||++|||+++|||++|.+.||..+.+
T Consensus 80 PvK~~~~~~~~~~~~~E~~a~~~l~~~LP~~l-~~~~~~~~~e~e-~~~~Ea~lvK~aDkL~a~l~a~~e~~~Gn~ef~~ 157 (195)
T PRK03826 80 PVKYFNPEIAHEYKKIEKIAEQKLLDMLPEEL-QEDFRPLLDSHA-ASEEEKAIVKQADALCAYLKCLEELSAGNNEFNL 157 (195)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHhccc-CCcHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 753 3346788899999999999999876 589999999985 6899999999999999999999999999876655
Q ss_pred hhh
Q 043096 235 FFL 237 (243)
Q Consensus 235 f~~ 237 (243)
...
T Consensus 158 a~~ 160 (195)
T PRK03826 158 AKK 160 (195)
T ss_pred HHH
Confidence 443
No 4
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=255.33 Aligned_cols=154 Identities=40% Similarity=0.618 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096 84 SAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIP-----GVDRERCIKIAIVHDIAEAIVGDITP 158 (243)
Q Consensus 84 ~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~-----~vD~~KvlkmALiHDL~Ea~tGDI~~ 158 (243)
.+++|+..+++||.++|+||+..|+..+||||+|||+||++|++++... ++|++|++.|||+||++|++||||++
T Consensus 4 ~~~~~~~~~~~Lk~i~R~gw~~~g~~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~t 83 (193)
T COG1896 4 DLLKFFALLSRLKDIPRTGWLLRGIWNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPT 83 (193)
T ss_pred hHHHHHHHHHHHHhhhccchhhcCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCC
Confidence 4788889999999999999999999999999999999999999988653 48999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCcc--chhhh
Q 043096 159 SDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFF 236 (243)
Q Consensus 159 ~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~--l~ef~ 236 (243)
+.+.....+.+.++++++.++..+.+. ..++.++|.||++.+|+|+++||++|||++++|+++|.+.++.+ +..|+
T Consensus 84 p~k~~~~~~~~~~~e~e~~~~~~~~~~--p~e~~~~~~~~~~~~s~ea~~vk~aDkl~~~l~~~~~~~~~~~~~~~~~~~ 161 (193)
T COG1896 84 PVKYARAGLYKEEEEAEEAAIHLLFGL--PEELLELFREYEKRSSLEARIVKDADKLELLLQALEYEQGGNGEDILKAFL 161 (193)
T ss_pred chhhhcchHHHHHHHHHHHHHHcccCC--cHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 876555555555555666666654433 47999999999999999999999999999999999999866665 88877
Q ss_pred hhc
Q 043096 237 LST 239 (243)
Q Consensus 237 ~s~ 239 (243)
...
T Consensus 162 ~~~ 164 (193)
T COG1896 162 EAI 164 (193)
T ss_pred Hhh
Confidence 644
No 5
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=99.93 E-value=1.7e-25 Score=196.86 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=110.0
Q ss_pred HHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHhhhhhhhhcCCCCC
Q 043096 85 AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCIKIAIVHDIAEAIVGDITPS 159 (243)
Q Consensus 85 ~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD~~KvlkmALiHDL~Ea~tGDI~~~ 159 (243)
+-+|+.-+.+|++|.||+-+..- ..+|||+|||+||.+|++||.+ .+||+.+++.+||.||++|++||||++|
T Consensus 3 ~~~f~~~l~~le~I~R~pg~fk~--~~~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TP 80 (215)
T PF12917_consen 3 MHQFFQSLSRLETIIRWPGMFKF--QEHNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTP 80 (215)
T ss_dssp HHHHHHHHHHTTSSBSSTSS--S--S--BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-
T ss_pred HHHHHHHHHhhHHHHHccCccCc--chhhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCc
Confidence 56899999999999999988765 4999999999999999999875 3689999999999999999999999999
Q ss_pred CCCC----hHHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCcc--c
Q 043096 160 DGVP----KEVKSRMEQEALNEMC-KVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--L 232 (243)
Q Consensus 160 d~~~----~~~K~~~E~~A~~~L~-~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~--l 232 (243)
.+-. ...-...|+.+.++++ +.+|++++ +.|+....|- +.+|.|++||+++||++++++|...-+.||.. +
T Consensus 81 VKy~tPelr~~~~~VE~~m~~~~i~~~iP~e~q-~~Y~~~l~E~-KDdt~EG~Iv~~ADkidal~e~~~Ei~~GN~E~~F 158 (215)
T PF12917_consen 81 VKYATPELREMLAQVEEEMTENFIKKEIPEEFQ-EAYRRRLKEG-KDDTLEGQIVKAADKIDALYECFGEIQKGNPEKVF 158 (215)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHHHHHS-GGGH-HHHHHHHS----SSSHHHHHHHHHHHHHHHHHHHHHHHTT-S-THH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHhhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 8632 3334577888888877 48998664 5666666553 45799999999999999999999999999976 5
Q ss_pred hhhhh
Q 043096 233 DEFFL 237 (243)
Q Consensus 233 ~ef~~ 237 (243)
.+-|.
T Consensus 159 ~e~y~ 163 (215)
T PF12917_consen 159 KEIYR 163 (215)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 6
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.08 E-value=1.7e-06 Score=65.47 Aligned_cols=46 Identities=26% Similarity=0.189 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHhhhhhhhhcCCC
Q 043096 112 ESIADHMYRMALMALIAGDIP---GVDRERCIKIAIVHDIAEAIVGDIT 157 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~---~vD~~KvlkmALiHDL~Ea~tGDI~ 157 (243)
+++.+||++|+.++..++... +.|.+.+...||+||+++...++..
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~~~~~~ 49 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAI 49 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCccCcccc
Confidence 478899999999999877543 6788899999999999998877764
No 7
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.88 E-value=2.8e-05 Score=57.84 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHH-HhCCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGV-DRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCK-VLGGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~v-D~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~-lLp~~~~~ 188 (243)
.+++.+|+++|+.++..+++..+. |.+.+...||+||+++...++...... . ....-+......+-. .+++..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~-~--~~~~h~~~~~~~~~~~~~~~~~-- 76 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKT-S--VLEDHHFIGAEILLEEEEPRIL-- 76 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCc-c--HHHHhHHHHHHHHHhCCCCHHH--
Confidence 578999999999999988865555 778899999999999988776553210 0 111111212111111 122211
Q ss_pred HHHH---HHHH------HHhcCCChHHHHHHHHHHHHHHHHHHH
Q 043096 189 EEIQ---ELWA------EYENNASIEANLVKDFDKVEMILQALE 223 (243)
Q Consensus 189 ~e~~---~Lw~------EyE~~~T~EAklVK~~DkLe~llQa~e 223 (243)
.++. -.+. ++++..+..+++++.+|+++.+.+...
T Consensus 77 ~~~~~~~i~~h~~~~~~~~~~~~~~~~~il~~aD~~~~~~~~~~ 120 (124)
T smart00471 77 EEILATAILSHHERPDGLRGEPITLEARIVKVADRLDALRRDRR 120 (124)
T ss_pred HHHHhhHHHHhccccCCCCCCcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1110 1111 123367889999999999999876443
No 8
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=97.74 E-value=6.7e-06 Score=62.27 Aligned_cols=42 Identities=33% Similarity=0.316 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHhhhhhhhhcC
Q 043096 114 IADHMYRMALMALIAGDIPG--VDRERCIKIAIVHDIAEAIVGD 155 (243)
Q Consensus 114 VAEHS~~vAliAllla~~~~--vD~~KvlkmALiHDL~Ea~tGD 155 (243)
+.+||.+|+-+|..++...+ .|.+.+...||+||++-..++|
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~~~ 44 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPTPD 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHSTHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCCch
Confidence 46899999999998876545 8888999999999999988775
No 9
>PRK10119 putative hydrolase; Provisional
Probab=97.71 E-value=0.00027 Score=63.65 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHH----hCCCchHHH
Q 043096 115 ADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKV----LGGGMRAEE 190 (243)
Q Consensus 115 AEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~l----Lp~~~~~~e 190 (243)
-.|..||--+|..++..++.|.+-+...|++||+ ||.....+.... ....-...+..++.. +|++. .+.
T Consensus 27 ~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv-----~d~~k~~~~~~~-~~~~~a~~a~~~L~~~~~g~~~~~-i~~ 99 (231)
T PRK10119 27 ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDI-----VSLAKNHPQRHR-SSILAAEETRRILREDFPDFPAEK-IEA 99 (231)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc-----chhhhcCccccc-hhhHHHHHHHHHHHHcccCcCHHH-HHH
Confidence 5799999999998887778999999999999999 343222110000 001111122223222 33321 233
Q ss_pred HHHHHHHHh-----cCCChHHHHHHHHHHHHH-----HHHHHHHHHhcCc
Q 043096 191 IQELWAEYE-----NNASIEANLVKDFDKVEM-----ILQALEYEMEHGK 230 (243)
Q Consensus 191 ~~~Lw~EyE-----~~~T~EAklVK~~DkLe~-----llQa~eYe~~~~~ 230 (243)
+..+...-. ...|+|++||.++|||++ +..|+.|-...|.
T Consensus 100 V~~iI~~~sfs~~~~p~tlE~kIVQDADRLDAiGAIGIaR~f~~gG~~gr 149 (231)
T PRK10119 100 VCHAIEAHSFSAQIAPLTLEAKIVQDADRLEALGAIGLARVFAVSGALGV 149 (231)
T ss_pred HHHHHHHcCCCCCCCCCCHHHhhhhhHHHHHhcchHHHHHHHHHHHHhCC
Confidence 434433221 245899999999999998 5788888876554
No 10
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.31 E-value=0.0027 Score=56.91 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCch
Q 043096 112 ESIADHMYRMALMALIAGDIP----GVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMR 187 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~----~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~ 187 (243)
+-.-.||+||..+|..++... +.|.+-+..-||+|||+ |...+.+......+.....+..+++...++ ..
T Consensus 54 ~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG-----~~~~~~~~~~~~fe~~ga~~A~~~L~~~~G-~~ 127 (228)
T TIGR03401 54 PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG-----TTDENMTATKMSFEFYGGILALDVLKEQTG-AN 127 (228)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc-----cccccCCcccCCHHHHHHHHHHHHHHHCCC-CC
Confidence 356789999999999988532 79999999999999995 332221101111111112223333333311 11
Q ss_pred HHHHHHHHH-----HH---hcCCChHHHHHHHHHHHHHHH
Q 043096 188 AEEIQELWA-----EY---ENNASIEANLVKDFDKVEMIL 219 (243)
Q Consensus 188 ~~e~~~Lw~-----Ey---E~~~T~EAklVK~~DkLe~ll 219 (243)
.+....+|. ++ ....++|++||.++|+++.+=
T Consensus 128 ~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~G 167 (228)
T TIGR03401 128 QDQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVG 167 (228)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHcc
Confidence 233333332 12 122488999999999999863
No 11
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.25 E-value=0.0013 Score=55.77 Aligned_cols=42 Identities=31% Similarity=0.354 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHhhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIP-----GVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~-----~vD~~KvlkmALiHDL~Ea~ 152 (243)
++++-+||.+|+.+|..++... ++|.+.+...||+|||+-..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~ 57 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRAR 57 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCccc
Confidence 7889999999999999887643 38999999999999997654
No 12
>PRK12705 hypothetical protein; Provisional
Probab=97.12 E-value=0.0012 Score=65.62 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEE 190 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e 190 (243)
..|+-+||..||.+|..+|...++|.+.+...+|+|||+.++..++.. .|.. .-.+++...+.+ ..
T Consensus 321 gqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie~e~~~--------~H~~---iGaeLlkk~~~p---~~ 386 (508)
T PRK12705 321 GQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSIDRESDG--------NHVE---IGAELARKFNEP---DE 386 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcchhhhcc--------cHHH---HHHHHHHhcCCC---HH
Confidence 457999999999999999887789999999999999999986544311 1100 011122222211 23
Q ss_pred HHHHH---HHHhcCCChHHHHHHHHHHHHH
Q 043096 191 IQELW---AEYENNASIEANLVKDFDKVEM 217 (243)
Q Consensus 191 ~~~Lw---~EyE~~~T~EAklVK~~DkLe~ 217 (243)
+...+ .+...+.++++++|..+|.++.
T Consensus 387 Vv~aI~~HHe~~~~~~~~a~IVaiADaLSa 416 (508)
T PRK12705 387 VINAIASHHNKVNPETVYSVLVQIADALSA 416 (508)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHcC
Confidence 33333 3344668899999999998766
No 13
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=96.88 E-value=0.0028 Score=56.54 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh
Q 043096 110 GPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
..+|+-+||-+|+.+|+.++...++|++-+.+-||+||++=..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccc
Confidence 4689999999999999999987899999999999999995444
No 14
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=96.43 E-value=0.036 Score=52.04 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhhhhhhh--hcCCCC-CC--CC-ChHHHHHHHHHHHHHHHHHhC
Q 043096 111 PESIADHMYRMALMALIAGD-IPGVDRERCIKIAIVHDIAEAI--VGDITP-SD--GV-PKEVKSRMEQEALNEMCKVLG 183 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~-~~~vD~~KvlkmALiHDL~Ea~--tGDI~~-~d--~~-~~~~K~~~E~~A~~~L~~lLp 183 (243)
.-=.+|||..|+-+|..++. ++.+|.+-++..||+|||+=+. .|++.. ++ +. -.... +-.+.+.+.+..++
T Consensus 157 ~GGLleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~--lg~~~i~~~~~~l~ 234 (314)
T PRK13480 157 VSGLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHIS--IMVNEIAKAADELQ 234 (314)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHH--HHHHHHHHHHHHcC
Confidence 34478999999999998765 5789999999999999998554 444321 11 11 00000 00111122222222
Q ss_pred CCchHHHHHHH-------HHHHhcC-----CChHHHHHHHHHHHHHHHHHHHHHH
Q 043096 184 GGMRAEEIQEL-------WAEYENN-----ASIEANLVKDFDKVEMILQALEYEM 226 (243)
Q Consensus 184 ~~~~~~e~~~L-------w~EyE~~-----~T~EAklVK~~DkLe~llQa~eYe~ 226 (243)
-+ .++...| .-++|-+ .|+||-+++.+|.|++-++.+....
T Consensus 235 ~~--~e~~~~L~H~ILSHHG~~E~GSPv~P~t~EA~iLh~~D~lDAkl~~~~~~l 287 (314)
T PRK13480 235 ID--GEEVLILQHMVLSHHGKAEWGSPKPPLVKEAEILHYIDNIDAKMNMMDRAL 287 (314)
T ss_pred CC--HHHHHHHHhhhhccCCccccCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11 1222112 1133333 5999999999999999999886644
No 15
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.41 E-value=0.016 Score=55.03 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
.|.+..|+.+|+-+|..++...++|.+.++..||+||++-.
T Consensus 185 ~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~ 225 (339)
T PRK12703 185 SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRT 225 (339)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccc
Confidence 67899999999999999988778999999999999999543
No 16
>PRK12704 phosphodiesterase; Provisional
Probab=96.36 E-value=0.01 Score=59.13 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHH
Q 043096 110 GPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAE 189 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~ 189 (243)
...|+-.||.+||.+|..+|...++|.+.+...+|+||++-+...++.. ..... -.+++...+.. .
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~~~e~~~----~H~~i-------Ga~il~~~~~~---~ 397 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDHEVEG----SHVEI-------GAELAKKYKES---P 397 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCccccccC----CHHHH-------HHHHHHHcCCC---H
Confidence 3567899999999999999987789999999999999998875433211 00000 00112222211 2
Q ss_pred HHHHHHH---HHhcCCChHHHHHHHHHHHHH
Q 043096 190 EIQELWA---EYENNASIEANLVKDFDKVEM 217 (243)
Q Consensus 190 e~~~Lw~---EyE~~~T~EAklVK~~DkLe~ 217 (243)
.+..... +-....+.++.+|..+|.|+.
T Consensus 398 ~v~~aI~~HHe~~~~~~~~a~IV~~ADaLsa 428 (520)
T PRK12704 398 VVINAIAAHHGDEEPTSIEAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHhC
Confidence 2222222 112346899999999998774
No 17
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.74 E-value=0.049 Score=54.26 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEE 190 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e 190 (243)
..++-.||.+||.+|..+|...++|.+.+...+|+||++-++.-++.. .|.. .-.+++...+.. ..
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~e~~~--------~H~~---~Ga~ll~~~~~~---~~ 392 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDHEVEG--------SHVE---IGAELAKKYKES---PE 392 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccchhhcc--------cHHH---HHHHHHHHcCCC---HH
Confidence 456889999999999999977789999999999999998765322110 0100 001122222211 22
Q ss_pred HHHHHH---HHhcCCChHHHHHHHHHHHHHH
Q 043096 191 IQELWA---EYENNASIEANLVKDFDKVEMI 218 (243)
Q Consensus 191 ~~~Lw~---EyE~~~T~EAklVK~~DkLe~l 218 (243)
+..... +-....++++.+|..+|.++..
T Consensus 393 V~~aI~~HH~~~~~~~~~a~IV~~AD~lsa~ 423 (514)
T TIGR03319 393 VVNAIAAHHGDVEPTSIEAVLVAAADALSAA 423 (514)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhcCC
Confidence 332222 1123468999999999998863
No 18
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.67 E-value=0.012 Score=41.72 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIV 153 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~t 153 (243)
+.+-.|+.+++.+|..++...++|.+.+...||+||++....
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPIT 44 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCccc
Confidence 467899999999999998877899999999999999977653
No 19
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=95.61 E-value=0.022 Score=53.46 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHhhhhhhhhcCCCCC--CCCChHHHHHHHHHHHHH-------H
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRE---RCIKIAIVHDIAEAIVGDITPS--DGVPKEVKSRMEQEALNE-------M 178 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~---KvlkmALiHDL~Ea~tGDI~~~--d~~~~~~K~~~E~~A~~~-------L 178 (243)
-+....||.+||.+|..+|...+++-+ ++..-|++|||+-+.+=|-.-. .+.+ ..|.+.++. +
T Consensus 146 d~~t~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt-----~eE~~~ik~H~~~g~~i 220 (344)
T COG2206 146 DDYTYGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLT-----EEEFEIIKKHPIYGYDI 220 (344)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCC-----HHHHHHHHhchHHHHHH
Confidence 578899999999999999987666544 5677899999987764332211 1122 233344432 4
Q ss_pred HHHhCCCch-HHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHHHHHHHHH
Q 043096 179 CKVLGGGMR-AEEIQELWAEYENN-----------ASIEANLVKDFDKVEMILQALEYE 225 (243)
Q Consensus 179 ~~lLp~~~~-~~e~~~Lw~EyE~~-----------~T~EAklVK~~DkLe~llQa~eYe 225 (243)
+..++.... ..+..--..|-.+| -+.+|+|+..||-++++...--|.
T Consensus 221 L~~~~~~~~~~~~~~l~HHEr~DGtGYP~GL~GeeI~l~aRIiAVADvydAlts~RpYk 279 (344)
T COG2206 221 LKDLPEFLESVRAVALRHHERWDGTGYPRGLKGEEIPLEARIIAVADVYDALTSDRPYK 279 (344)
T ss_pred HHhcccccHHHHHHHHHhhhccCCCCCCCCCCcccCChHhHHHHHhhHHHHHhcCCCCc
Confidence 444442111 01122223444344 389999999999999999544443
No 20
>PRK00106 hypothetical protein; Provisional
Probab=94.99 E-value=0.17 Score=50.93 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=66.8
Q ss_pred HHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHH
Q 043096 88 FLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVK 167 (243)
Q Consensus 88 Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K 167 (243)
.+..+++||. |+ ...+|+-+||..||.+|..+|...++|.+.+...+|+|||+-++...+.. +
T Consensus 334 ~~~~lg~l~~--r~-------sy~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~e~~g----~---- 396 (535)
T PRK00106 334 LIKIMGRLQF--RT-------SYGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDREVEG----S---- 396 (535)
T ss_pred HHHHHHHHhh--hc-------cCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCccccC----C----
Confidence 3555666664 21 13567999999999999998876678999999999999999986543321 0
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---hcCCChHHHHHHHHHHHHH
Q 043096 168 SRMEQEALNEMCKVLGGGMRAEEIQELWAEY---ENNASIEANLVKDFDKVEM 217 (243)
Q Consensus 168 ~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~Ey---E~~~T~EAklVK~~DkLe~ 217 (243)
| .+. --.++...+. .+++....... ....++++.+|..+|.++.
T Consensus 397 H-a~i--Ga~ll~~~~~---~~~v~~aI~~HH~~~~~~s~~a~IV~~AD~lsa 443 (535)
T PRK00106 397 H-VEI--GMEFARKYKE---HPVVVNTIASHHGDVEPESVIAVIVAAADALSS 443 (535)
T ss_pred h-HHH--HHHHHHHcCC---CHHHHHHHHHhCCCCCCCChHHHHHHHHHHhcc
Confidence 0 000 0111111111 12233222221 1346899999999998873
No 21
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=94.90 E-value=0.025 Score=47.12 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
.+.--+||.+||.+|..++...++|.+++...+|+|||+..
T Consensus 6 ~~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 6 DEHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKF 46 (158)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhcc
Confidence 46678999999999999887667999999999999999974
No 22
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=92.83 E-value=0.062 Score=50.32 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=43.4
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh
Q 043096 97 TTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 97 ~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
.++++-++...+ .+..-.||.+||.+|..+|...+.|.+++...+|+||++-..
T Consensus 182 ~LY~e~~l~~~~--~~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 182 FLYLEDILKSFL--DEYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEW 235 (342)
T ss_pred CccccHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccC
Confidence 345555554433 577899999999999999977788999999999999999854
No 23
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=89.41 E-value=0.35 Score=42.66 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhh
Q 043096 114 IADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIA 149 (243)
Q Consensus 114 VAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~ 149 (243)
=-+|+.+|+=+|.-|+..-++|.+|+-.-+|+||++
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~a 53 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIA 53 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 358999999999999998899999999999999995
No 24
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=82.79 E-value=4.7 Score=35.37 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=41.1
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh--hcCCCCCCCCC
Q 043096 100 RKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI--VGDITPSDGVP 163 (243)
Q Consensus 100 R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~--tGDI~~~d~~~ 163 (243)
|.|=...+- .+=|-.||+.+.|.+|.--+. .+.+|.-||+|||+-.+ -||.+...++.
T Consensus 18 ~~g~e~y~g-e~VTq~eHaLQ~AtlAerdGa-----~~~lVaaALLHDiGhl~~~~g~~ps~~~i~ 77 (186)
T COG4341 18 RHGDEGYSG-EPVTQLEHALQCATLAERDGA-----DTALVAAALLHDIGHLYADYGHTPSAAGID 77 (186)
T ss_pred Hcccccccc-CcchhhhhHHHHhHHHHhcCC-----cHHHHHHHHHHhHHHHhhhcCCCccccccc
Confidence 555554442 467889999999988765433 25788999999998876 56677665543
No 25
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=81.42 E-value=16 Score=30.04 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAE 150 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~E 150 (243)
.+.--.|-..||.+ ++.+ +.| +.++.-||+||+.|
T Consensus 17 g~py~~H~~~va~~---l~~~-~~d-~~~i~aalLHD~ie 51 (153)
T PF13328_consen 17 GEPYISHPLEVAEI---LAEL-GLD-EETIAAALLHDVIE 51 (153)
T ss_dssp --BTTHHHHHHHHH---HHTS-----HHHHHHHHHTTHHH
T ss_pred CCcHHHHHHHHHHH---HHHc-CCC-HHHHhhheeecHHH
Confidence 35556788887755 4443 355 45899999999999
No 26
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=81.08 E-value=3 Score=35.08 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHhhhhhhhhc
Q 043096 110 GPESIADHMYRMALMALIAGDIPGV-DRERCIKIAIVHDIAEAIVG 154 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~v-D~~KvlkmALiHDL~Ea~tG 154 (243)
..+..-.||..+|.+|..++...+. +.+++...+|+||+++.+.=
T Consensus 91 ~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gLL~~iG~l~l~ 136 (196)
T PF08668_consen 91 NLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGLLHDIGKLLLL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHH
Confidence 3678899999999999988765444 46999999999999998743
No 27
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=76.59 E-value=3.8 Score=36.62 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCC----CCCCHH-----------HHHHHHHHhhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDI----PGVDRE-----------RCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~----~~vD~~-----------KvlkmALiHDL~Ea~ 152 (243)
+---.+||..|+.+|+-++.. .+.+++ -++..||+|||+.++
T Consensus 65 ~GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 65 LGGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred cchHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Confidence 344899999999999987642 244544 368899999999984
No 28
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=70.93 E-value=3.3 Score=39.49 Aligned_cols=109 Identities=15% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhh--------hhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhC
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAE--------AIVGDITPSDGVPKEVKSRMEQEALNEMCKVLG 183 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~E--------a~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp 183 (243)
-|=-+||..|+-+|-.++...+.|.+-+-..||.|||+= -...+....- ..-+-|...+ +++..|.
T Consensus 61 rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiGh~PfgH~gE~~l~~~~~~~-----~~f~hn~~s~-ri~~~l~ 134 (336)
T PRK01286 61 RTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLGHTPFGHAGEDALNELMKEY-----GGFEHNEQSL-RVVDKLE 134 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHhcccc-----CCCcHHHHHH-HHHHHHh
Confidence 477899999999999877655677777777999999953 1111111100 0011222222 2222221
Q ss_pred ----C-CchHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 043096 184 ----G-GMRAEEIQELWAEYE--------NNASIEANLVKDFDKVEMILQALEYEME 227 (243)
Q Consensus 184 ----~-~~~~~e~~~Lw~EyE--------~~~T~EAklVK~~DkLe~llQa~eYe~~ 227 (243)
+ .+... ..+-...|- ...|.|+.+|.++|.++-.+.=+|=-.+
T Consensus 135 ~~~~glnLT~~-tL~gilKyp~~~~~~k~~~~tle~~ive~ADdIaY~~~DiEDai~ 190 (336)
T PRK01286 135 KRYDGLNLTWE-VREGILKHSGPRNAPLGTAATLEGQIVRLADEIAYNNHDIDDGIR 190 (336)
T ss_pred hcCCCccCCHH-HHhhHHhCCccccccccCCCchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1 11111 222223342 2367899999999999877766655433
No 29
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=65.33 E-value=17 Score=31.82 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
+=|-.+|+.++|.+|.-- +.| +.++..||+|||+-.+
T Consensus 23 ~Vs~leH~LQ~A~lA~~~----Gad-~elvvAALLHDIGhll 59 (179)
T TIGR03276 23 AVSQLEHALQCAQLAEAA----GAD-DELIVAAFLHDIGHLL 59 (179)
T ss_pred CCcHHHHHHHHHHHHHHc----CCC-HHHHHHHHHHhcchhh
Confidence 567789999999877543 444 5668999999997544
No 30
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=62.23 E-value=6.2 Score=38.80 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIA 149 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~ 149 (243)
.-|--.||..||-+|-.++...+.|.+=+...||.|||+
T Consensus 68 ~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 68 PRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 578899999999999988776677888888999999995
No 31
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=52.25 E-value=8.3 Score=31.51 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhC-------CCCCC-CHHHHHHHHHHhhhhhh
Q 043096 115 ADHMYRMALMALIAG-------DIPGV-DRERCIKIAIVHDIAEA 151 (243)
Q Consensus 115 AEHS~~vAliAllla-------~~~~v-D~~KvlkmALiHDL~Ea 151 (243)
.+|+..|+-++..+. ...+. ..+-+...|++||++=+
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~ 46 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKI 46 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccC
Confidence 589999998887532 21222 35566778999999765
No 32
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=51.92 E-value=9.6 Score=36.77 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-----------CCCHHHHHHHHHHhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIP-----------GVDRERCIKIAIVHDIA 149 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~-----------~vD~~KvlkmALiHDL~ 149 (243)
.-|=-.||..||-+|--++... ..|.+=+-..||.|||+
T Consensus 36 ~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 36 VRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 4566899999999988665321 12556677899999995
No 33
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=50.39 E-value=47 Score=34.51 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAE 150 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~E 150 (243)
|.-..|-.+||.+ ++++ +.|.+ .+.-||+||+.|
T Consensus 18 ~PYi~Hpl~VA~i---L~~~-~~D~~-~i~AaLLHDvvE 51 (683)
T TIGR00691 18 EPYIIHPLAVALI---LAEL-GMDEE-TVCAALLHDVIE 51 (683)
T ss_pred CcHHHHHHHHHHH---HHHh-CCCHH-HHHHHhccchHh
Confidence 5566899998865 3442 45654 688999999998
No 34
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=47.97 E-value=21 Score=33.57 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHhhhhhhh-hcCCCC
Q 043096 110 GPESIADHMYRMALMALIAGDIPG-VDRERCIKIAIVHDIAEAI-VGDITP 158 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~-vD~~KvlkmALiHDL~Ea~-tGDI~~ 158 (243)
+...+-+++++.|++|..+++..+ .|.+++..-.|+|++++.. .-|.+.
T Consensus 113 ~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~~gLLh~lG~l~ll~~~~~ 163 (289)
T COG1639 113 DRQLFWDTAIETAMIAEGLARALGRADSDEAYTAGLLHNLGILVLLTDFPD 163 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHccHHHHHHHhHH
Confidence 467889999999999999886544 9999999999999999987 445544
No 35
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=47.44 E-value=35 Score=34.10 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCCChHHHHHHHHHHh-hcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 78 SSSSTSSAIDFLTLCH-SLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 78 ~~s~~~~~i~Fl~~~~-rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
.-++.+.++.=+.++. +++.++|..- .+--..| +...|++|+++. .| ..|+.-||+||..|.
T Consensus 70 ~t~~s~lv~KAl~~Aa~~HR~Q~Rad~-------~rPY~nH---~i~ta~iLAd~~-~d-s~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 70 KTFSSELVIKALYEAAKAHRGQMRADD-------DRPYLNH---CIETAMILADIG-AD-STVVVAAILHDVVDD 132 (543)
T ss_pred hcCcHHHHHHHHHHHHHHHhcccccCC-------CCchhhh---HHHHHHHHHHhh-cc-hHHHHHHHHHHHHhh
Confidence 3344566666444443 4455555321 1233344 345557777753 33 346667999999873
No 36
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=47.06 E-value=1.3e+02 Score=31.70 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHH
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIV--HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAE 189 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALi--HDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~ 189 (243)
=|.+||+=|+-.+|-.+|...+.|.+++..-|++ -||.--.+|-.|--.|+ |-+-..++.++ .+
T Consensus 360 GTl~dKv~Ri~~iA~~ia~~l~~d~~~~~rAa~l~KaDL~T~mV~EFpELQGi------------MG~~YA~~~Ge--~~ 425 (691)
T COG0751 360 GTLADKVERIKKIAAYIAPQLGADVEDADRAALLAKADLVTEMVGEFPELQGI------------MGEYYALHDGE--DE 425 (691)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhhhhhHhhhcCChhhhHH------------HHHHHHHHcCC--CH
Confidence 4899999999999999998777787776665554 37766666655433222 11122222222 13
Q ss_pred HHH-HHHHHHh-------cCCChHHHHHHHHHHHHHHHHH
Q 043096 190 EIQ-ELWAEYE-------NNASIEANLVKDFDKVEMILQA 221 (243)
Q Consensus 190 e~~-~Lw~EyE-------~~~T~EAklVK~~DkLe~llQa 221 (243)
++. .+.+.|. --+|+.+.+|-.+|||++++-+
T Consensus 426 ~VA~Ai~EhY~Pr~~gd~lP~t~~g~~valADKLDTLvg~ 465 (691)
T COG0751 426 EVALAIEEHYLPRFAGDELPSTPVGAVVALADKLDTLVGF 465 (691)
T ss_pred HHHHHHHHhcCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 333 6777772 2368899999999999999877
No 37
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=46.09 E-value=30 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAE 150 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~E 150 (243)
|.--.|-..||.+ ++++ +.|.+ .+.-||+||..|
T Consensus 43 ePYi~Hpl~VA~i---La~l-~~D~~-ti~AaLLHDvvE 76 (702)
T PRK11092 43 EPYITHPVAVACI---LAEM-RLDYE-TLMAALLHDVIE 76 (702)
T ss_pred CcHHHHHHHHHHH---HHHc-CCCHH-HHHHhcccchhh
Confidence 3344799988866 4443 57755 789999999999
No 38
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=45.71 E-value=15 Score=36.25 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHhhcccccccccccCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHhhhh
Q 043096 89 LTLCHSLKTTKRKGWINHGIK---GPESIADHMYRMALMALIAGDIPGVD-----RERCIKIAIVHDIA 149 (243)
Q Consensus 89 l~~~~rLK~i~R~Gw~~~gV~---~~ESVAEHS~~vAliAllla~~~~vD-----~~KvlkmALiHDL~ 149 (243)
+-.-..++.++...-++ +.. -.-|=--||..||-||--++...+.| .+=|=..||.|||+
T Consensus 42 IihSaAfRRLq~KTQVf-~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiG 109 (412)
T COG0232 42 IIHSAAFRRLQDKTQVF-PLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIG 109 (412)
T ss_pred hhhhHHHHhhcccceec-ccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCC
Confidence 34445567777776665 221 14455689999999998877655666 55666789999995
No 39
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=43.75 E-value=2.4e+02 Score=27.80 Aligned_cols=37 Identities=5% Similarity=-0.111 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
..++.+|++.+--.+- .. .-|. .+--.||+||++-..
T Consensus 226 ~~d~~~htl~~l~~~~---~~-~~~l-~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 226 KFNLGNYILMGLSKIS---KL-TKDI-DIRFSYLCQFLGSMI 262 (417)
T ss_pred chhHHHHHHHHHHHHH---hc-CCCH-HHHHHHHHhhhcCCC
Confidence 3467788875432221 11 1132 245578999998643
No 40
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=42.96 E-value=1.6e+02 Score=22.89 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 043096 135 DRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDK 214 (243)
Q Consensus 135 D~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~Dk 214 (243)
+++.+++-+|-|=-.. .|+-++....+...++....+++..++ ..|.+ +..++....-.++.++..-.-..++|.
T Consensus 4 ~l~~LLkWsI~ns~~~--~~~~~~~~~~~~~~~~~l~~~~L~~l~-~~~sd--a~lMK~a~~vl~~~~~t~edk~~Ald~ 78 (92)
T PF08609_consen 4 NLNGLLKWSIENSTTS--ASDAPPSAEQPDEERRQLDPEALDALF-GGPSD--AELMKEAMEVLEDPEVTLEDKLIALDN 78 (92)
T ss_pred HHHHHHHHHHHcCCCC--ccccccCcCCchhhhhhccHHHHHHHH-cCCCH--HHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4678888888887211 133333222333344556667777776 33443 456777777777666666666778999
Q ss_pred HHHHHHHHH
Q 043096 215 VEMILQALE 223 (243)
Q Consensus 215 Le~llQa~e 223 (243)
|+.+++.+.
T Consensus 79 le~LVE~ID 87 (92)
T PF08609_consen 79 LEELVENID 87 (92)
T ss_pred HHHHHHccc
Confidence 999988654
No 41
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=42.62 E-value=1e+02 Score=25.08 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=48.0
Q ss_pred HHHHHHHHH-hhhhhhhhcCCCCCCCCCh--HHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHhcCCChHHHH
Q 043096 137 ERCIKIAIV-HDIAEAIVGDITPSDGVPK--EVKSRMEQEALNEMCKVLGGGMR-----AEEIQELWAEYENNASIEANL 208 (243)
Q Consensus 137 ~KvlkmALi-HDL~Ea~tGDI~~~d~~~~--~~K~~~E~~A~~~L~~lLp~~~~-----~~e~~~Lw~EyE~~~T~EAkl 208 (243)
.+.+.++|. +++-..++|+++.|..... +.-.+.-..++.-|+..+.+.+. .+-=+++|+..+ .+|
T Consensus 22 ~~~~~~~L~~~~l~~~i~g~~~~P~~~~~~~~~W~~~d~~v~swl~~sis~~i~~~i~~~~tak~~W~~L~------~~f 95 (152)
T PF14244_consen 22 SQQMEMALRGKGLWGFIDGTIPKPPETDPAYEKWERKDQLVLSWLLNSISPDILSTIIFCETAKEIWDALK------ERF 95 (152)
T ss_pred HHHHHHHHHhCCCcccccCccccccccchhhhhHHHhhhHHHHHHHHhhcHHHHhhhHhhhhHHHHHHHHH------HHh
Confidence 345566554 8999999999998853221 11122222333334444443211 011124555443 333
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCccchhhhhh
Q 043096 209 VKDF--DKVEMILQALEYEMEHGKVLDEFFLS 238 (243)
Q Consensus 209 VK~~--DkLe~llQa~eYe~~~~~~l~ef~~s 238 (243)
...- -++-.+-+.+...++++..+.+||..
T Consensus 96 ~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~ 127 (152)
T PF14244_consen 96 SQKSNASRVFQLRNELHSLKQGDKSVTEYFNK 127 (152)
T ss_pred hcccHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3222 23333444555566777778888753
No 42
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=39.82 E-value=29 Score=36.25 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIV--HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALi--HDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~ 188 (243)
==|+.|.+-|+.-+|-.+++..++|.+.+.+-|.+ .||.--.+|--|--.|+ |-+......++.
T Consensus 355 LGs~~dK~~Ri~~La~~la~~l~~~~~~~~RAa~L~KaDL~T~mV~EFpELQGi------------MG~~YA~~~GE~-- 420 (682)
T PRK01233 355 LGTLYDKVERIRALAGYIAEQLGADAALAERAALLAKADLVTEMVGEFPELQGI------------MGRYYALHDGED-- 420 (682)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhccchhhccChHhhHH------------HHHHHHHHCCCC--
Confidence 35899999999999998887666665433333222 46655555544332221 122222222221
Q ss_pred HHHH-HHHHHHh-------cCCChHHHHHHHHHHHHHHHHHH
Q 043096 189 EEIQ-ELWAEYE-------NNASIEANLVKDFDKVEMILQAL 222 (243)
Q Consensus 189 ~e~~-~Lw~EyE-------~~~T~EAklVK~~DkLe~llQa~ 222 (243)
+++. .+.+.|. --+|+.+.+|-.+|||+++.-+.
T Consensus 421 ~~VA~AI~EhY~P~~~~d~lP~t~~g~ilaiADKlDtL~g~F 462 (682)
T PRK01233 421 EEVALAIEEHYLPRFAGDELPSTPVGAAVALADKLDTLVGIF 462 (682)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 2333 4555553 23688999999999999999773
No 43
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=39.18 E-value=39 Score=31.79 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=34.7
Q ss_pred CCC-HHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhhhhhhh
Q 043096 111 PES-IADHMYRMALMALIAGD-IPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ES-VAEHS~~vAliAllla~-~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
.++ .|+|++-|+-++.-+++ +..+|.+=+..-+++||++=..
T Consensus 138 ~~~gLa~ht~~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~ 181 (287)
T COG3481 138 FEGGLAEHTLTVLELYKRISEIYPTVNRELIYAGAILHDIGKVL 181 (287)
T ss_pred hhcchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcccccc
Confidence 566 89999998888877765 4789999999999999997543
No 44
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=36.32 E-value=1.3e+02 Score=31.76 Aligned_cols=46 Identities=28% Similarity=0.272 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhh---------hhhhcCCCCCCC
Q 043096 116 DHMYRMALMALIAGDIPGVDRERCIKIAIVHDIA---------EAIVGDITPSDG 161 (243)
Q Consensus 116 EHS~~vAliAllla~~~~vD~~KvlkmALiHDL~---------Ea~tGDI~~~d~ 161 (243)
.||--||-+|=.+|+.-|.|..=|-.-|.+|||+ |=-+|+..+.|.
T Consensus 492 ~HSvmVAnLAEaAa~~IGan~lLaRVgayYHDIGK~~rP~~FiENQ~~g~N~Hd~ 546 (700)
T COG1480 492 QHSVMVANLAEAAAEEIGANSLLARVGAYYHDIGKMKRPLFFIENQMGGKNPHDD 546 (700)
T ss_pred cchhhHHHHHHHHHHHhCCchHHHHHHHHHhhcccccCCccccccccCCCCCccc
Confidence 5899888888878877789999999999999996 667788877764
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=34.94 E-value=78 Score=33.46 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHhCC-------------CCCCCHHHHHHH-HHHhhhhhhhh
Q 043096 111 PESIADHMYRMALMALIAGD-------------IPGVDRERCIKI-AIVHDIAEAIV 153 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~-------------~~~vD~~Kvlkm-ALiHDL~Ea~t 153 (243)
..+|-+|+.++.-.+.-+.. +.+++...++++ ||+||++-...
T Consensus 426 ~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg~~ 482 (850)
T TIGR01693 426 VYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKGRG 482 (850)
T ss_pred ecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcCCC
Confidence 46999999986544332221 113333445555 89999997543
No 46
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=62 Score=34.77 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhhc-ccccccc----cccCCCCCCCCHHHHHHHHHHHHHHhCCC-------------CCC-CHHHHHHH
Q 043096 82 TSSAIDFLTLCHSL-KTTKRKG----WINHGIKGPESIADHMYRMALMALIAGDI-------------PGV-DRERCIKI 142 (243)
Q Consensus 82 ~~~~i~Fl~~~~rL-K~i~R~G----w~~~gV~~~ESVAEHS~~vAliAllla~~-------------~~v-D~~Kvlkm 142 (243)
....+..+...+-| +.++=|| .|+.+.-..=||-||+.++..-.--++.- .++ +++=++.-
T Consensus 410 ~~r~l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLylA 489 (867)
T COG2844 410 IRRTLRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYLA 489 (867)
T ss_pred HHHHHHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHHHHH
Confidence 34444444444444 2344454 34444333679999999987655444321 133 55777888
Q ss_pred HHHhhhhhhhhcCCCC
Q 043096 143 AIVHDIAEAIVGDITP 158 (243)
Q Consensus 143 ALiHDL~Ea~tGDI~~ 158 (243)
||+|||+=-.-||-.-
T Consensus 490 aLfHDIaKGRggDHs~ 505 (867)
T COG2844 490 ALFHDIAKGRGGDHSI 505 (867)
T ss_pred HHHHHhhcCCCCchHH
Confidence 9999999998888754
No 47
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=33.47 E-value=2.2e+02 Score=29.17 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHH--hhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhCCCch
Q 043096 111 PESIADHMYRMALMALIAGDIP-GVDRERCIKIAIV--HDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMR 187 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~-~vD~~KvlkmALi--HDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~ 187 (243)
-=|+.|-+-|+.-+|-.++... +.|.+.+...|.+ .||.--.+|--|--.|+ |-.......++
T Consensus 352 LGtl~dK~~Ri~~la~~ia~~l~~~~~~~~~rAa~L~KaDL~T~mV~EFPELQGi------------MG~~YA~~~GE-- 417 (548)
T PF02092_consen 352 LGTLYDKTERIRKLARYIAEQLGEEDKEDAERAALLCKADLVTNMVGEFPELQGI------------MGRYYALADGE-- 417 (548)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHhhhhcccccChHHHHH------------HHHHHHHHCCC--
Confidence 3589999999999998877643 5666655555544 67766666655432221 11222222222
Q ss_pred HHHHH-HHHHHHh-------cCCChHHHHHHHHHHHHHHHHHH
Q 043096 188 AEEIQ-ELWAEYE-------NNASIEANLVKDFDKVEMILQAL 222 (243)
Q Consensus 188 ~~e~~-~Lw~EyE-------~~~T~EAklVK~~DkLe~llQa~ 222 (243)
.+++. .+.+.|. --+|..+.+|-.+||+++++-+.
T Consensus 418 ~~~VA~AI~EhY~P~~~~d~lP~t~~g~ilsiADKlDtl~g~F 460 (548)
T PF02092_consen 418 SEEVALAIEEHYLPRFAGDELPSTPIGAILSIADKLDTLVGFF 460 (548)
T ss_pred chHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12333 4555552 22699999999999999999874
No 48
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=28.83 E-value=2.3e+02 Score=20.64 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHhhhhhhhhc---CCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 043096 141 KIAIVHDIAEAIVG---DITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAE 197 (243)
Q Consensus 141 kmALiHDL~Ea~tG---DI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~E 197 (243)
.|.+++++++.-.. +.+-++ ..+|++.++++...-.+++....+..+|.+
T Consensus 22 R~~~~~~i~~~K~~~~~~~~i~d-------~~Re~~vl~~~~~~~~~~l~~~~i~~if~~ 74 (76)
T TIGR01807 22 RATYAQAVGELKGSGASGASFYR-------PEREAQVIRRLQNLNKGPLDQEAIARIFRE 74 (76)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC-------hHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 48899999999875 454433 245666666665544333334677788865
No 49
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.19 E-value=32 Score=33.97 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC--C------------CH-HHHHHHHHHhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPG--V------------DR-ERCIKIAIVHDIA 149 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~--v------------D~-~KvlkmALiHDL~ 149 (243)
.-|=-.||..|+-+|-.++...+ + +. .=+...||.|||+
T Consensus 59 ~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiG 112 (440)
T PRK01096 59 IHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIG 112 (440)
T ss_pred CcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCC
Confidence 46778999999998876543110 1 11 1346689999985
No 50
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=25.98 E-value=49 Score=32.55 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC------C----C-CHHHHHHHHHHhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIP------G----V-DRERCIKIAIVHDIA 149 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~------~----v-D~~KvlkmALiHDL~ 149 (243)
.-|=-.||..||-+|--++... + . |..=+-..||.|||+
T Consensus 56 ~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 56 YRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred CcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 5677899999999887655321 1 2 333355889999985
No 51
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=21.26 E-value=1.2e+02 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhh
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAE 150 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~E 150 (243)
.|----|--.||.| |+++ +.| ...+.-||+||+.|
T Consensus 46 GePYi~Hpl~Va~i---Lael-~~d-~~tl~AaLLHD~vE 80 (701)
T COG0317 46 GEPYISHPLEVAEI---LAEL-HMD-METLAAALLHDTIE 80 (701)
T ss_pred CCchhhCHHHHHHH---HHHc-cCC-HHHHHHHHccchHh
Confidence 45555677776654 4442 233 45677899999998
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=20.82 E-value=87 Score=33.67 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-HHH-HHHHHHHhhhhh
Q 043096 110 GPESIADHMYRMALMALIAGDIPGVD-RER-CIKIAIVHDIAE 150 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~vD-~~K-vlkmALiHDL~E 150 (243)
..+++.||.-.||-+|-.++..-++. ..+ +-.++++||++=
T Consensus 672 ~~q~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK 714 (844)
T TIGR02621 672 DEVALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGK 714 (844)
T ss_pred CcEEHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccccc
Confidence 36899999999999998876543431 122 346999999974
Done!