Query 043096
Match_columns 243
No_of_seqs 128 out of 841
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dmb_A HD domain-containing pr 100.0 1.5E-50 5E-55 352.9 16.0 165 77-243 9-175 (204)
2 3kh1_A Predicted metal-depende 100.0 7.1E-45 2.4E-49 316.0 11.3 159 77-237 5-169 (200)
3 1ynb_A Hypothetical protein AF 100.0 3E-43 1E-47 300.0 5.3 142 80-239 5-149 (173)
4 1xx7_A Oxetanocin-like protein 100.0 1.6E-42 5.6E-47 297.3 7.9 146 85-240 9-159 (184)
5 2cqz_A 177AA long hypothetical 100.0 1.1E-39 3.7E-44 276.5 12.3 147 83-239 2-153 (177)
6 2paq_A 5'-deoxynucleotidase YF 100.0 5.5E-38 1.9E-42 271.7 10.9 144 85-232 5-158 (201)
7 3mzo_A LIN2634 protein; HD-dom 100.0 1.1E-36 3.9E-41 266.8 16.8 144 84-231 3-156 (216)
8 2gz4_A Hypothetical protein AT 100.0 7.9E-29 2.7E-33 216.5 8.7 138 82-238 25-165 (207)
9 3b57_A LIN1889 protein; Q92AN1 97.6 0.00031 1.1E-08 59.7 9.5 105 111-227 23-142 (209)
10 3dto_A BH2835 protein; all alp 97.4 0.00054 1.8E-08 59.6 8.7 108 111-230 23-144 (223)
11 3gw7_A Uncharacterized protein 97.3 0.00021 7.3E-09 62.9 5.2 108 114-230 26-149 (239)
12 3djb_A Hydrolase, HD family; a 97.3 0.0019 6.6E-08 56.0 10.8 108 111-230 23-144 (223)
13 2pjq_A Uncharacterized protein 96.8 0.0024 8.3E-08 55.1 7.2 106 111-228 28-148 (231)
14 2qgs_A Protein Se1688; alpha-h 96.8 0.0057 2E-07 52.5 9.4 107 111-230 23-145 (225)
15 3tm8_A BD1817, uncharacterized 96.7 0.0062 2.1E-07 55.1 9.2 113 110-225 163-297 (328)
16 2hek_A Hypothetical protein; p 96.6 0.0055 1.9E-07 57.1 8.2 144 91-238 27-188 (371)
17 2pq7_A Predicted HD superfamil 96.3 0.012 4.1E-07 49.8 8.1 109 111-227 31-151 (220)
18 2o08_A BH1327 protein; putativ 95.1 0.0085 2.9E-07 49.7 2.1 40 112-151 17-56 (188)
19 3ccg_A HD superfamily hydrolas 95.0 0.0092 3.1E-07 49.6 2.1 40 113-152 19-58 (190)
20 2ogi_A Hypothetical protein SA 94.9 0.01 3.4E-07 49.8 2.1 40 112-151 25-64 (196)
21 3hc1_A Uncharacterized HDOD do 94.2 0.062 2.1E-06 47.6 5.7 46 111-156 116-162 (305)
22 2dqb_A Deoxyguanosinetriphosph 93.3 0.77 2.6E-05 42.8 11.6 38 112-149 74-111 (376)
23 3nr1_A HD domain-containing pr 90.5 2.6 8.9E-05 35.1 10.6 116 82-219 7-127 (178)
24 3m1t_A Putative phosphohydrola 89.3 0.18 6.1E-06 44.1 2.6 44 111-154 103-146 (275)
25 3nqw_A CG11900; stringent resp 88.3 3.4 0.00012 34.3 9.8 117 81-219 8-129 (179)
26 3ljx_A MMOQ response regulator 88.3 0.36 1.2E-05 42.5 3.9 44 112-155 107-151 (288)
27 2q14_A Phosphohydrolase; BT420 86.0 0.81 2.8E-05 43.1 5.1 139 90-236 31-188 (410)
28 3i7a_A Putative metal-dependen 83.0 0.76 2.6E-05 40.0 3.2 42 112-153 116-164 (281)
29 1vqr_A Hypothetical protein CJ 77.6 1.2 4.2E-05 38.9 2.8 44 112-155 123-167 (297)
30 3mem_A Putative signal transdu 74.3 2.2 7.6E-05 40.1 3.7 45 110-154 275-323 (457)
31 1vj7_A Bifunctional RELA/SPOT; 68.6 6 0.00021 37.0 5.2 35 112-151 48-82 (393)
32 3irh_A HD domain protein; phos 61.0 8.8 0.0003 37.0 4.9 58 90-149 62-137 (480)
33 3u1n_A SAM domain and HD domai 48.0 14 0.00048 36.0 4.0 58 90-149 41-111 (528)
34 2ibn_A Inositol oxygenase; red 42.9 24 0.00082 31.4 4.3 45 111-159 57-111 (250)
35 3kq5_A Hypothetical cytosolic 39.1 26 0.0009 33.0 4.2 42 111-152 73-119 (393)
36 3sk9_A Putative uncharacterize 21.1 48 0.0017 29.0 2.5 42 110-151 22-79 (265)
37 3bg2_A DGTP triphosphohydrolas 20.3 53 0.0018 31.1 2.7 57 92-149 44-119 (444)
No 1
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=352.93 Aligned_cols=165 Identities=47% Similarity=0.816 Sum_probs=153.4
Q ss_pred CCCCChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCC
Q 043096 77 SSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDI 156 (243)
Q Consensus 77 ~~~s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI 156 (243)
.+...++++++|+.++++||+++||||+.+||+++||||||||+||+||+++++ .++|++||++|||+||++|++||||
T Consensus 9 ~~~~~~~~~~~Fl~~~~~LK~i~R~g~~~~gv~~~ESVAEHS~~vAliA~~l~~-~~vD~~r~~~maL~HDl~E~~tGDi 87 (204)
T 4dmb_A 9 FSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDI 87 (204)
T ss_dssp ----CHHHHHHHHHHHHHGGGCBCHHHHHTTCSSCCBHHHHHHHHHHHHHHSCC-TTSCHHHHHHHHHHTTTTHHHHCCC
T ss_pred ccccCHHHHHHHHHHHHHhccCccCCCcCCCCCCCCcHHHHHHHHHHHHHHHcc-ccCCHHHHHHHHHhcchHHhhcCCC
Confidence 355669999999999999999999999999998899999999999999999997 4699999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCc--cchh
Q 043096 157 TPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGK--VLDE 234 (243)
Q Consensus 157 ~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~--~l~e 234 (243)
++.+...+..|+++|++|+++++++||++. +.+|.+||.|||+++|+||+|||++|||+++|||++|+++||. +|++
T Consensus 88 tp~k~~~~~~k~~~E~~A~~~l~~~LP~~~-~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~ 166 (204)
T 4dmb_A 88 APADNIPKEEKHRREEEAMKQITQLLPEDL-RKELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQD 166 (204)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHH
T ss_pred ccccccchhhhHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHH
Confidence 888788888999999999999999999865 5899999999999999999999999999999999999999998 8999
Q ss_pred hhhhccCCC
Q 043096 235 FFLSTAGKI 243 (243)
Q Consensus 235 f~~s~~g~~ 243 (243)
||.++.|+|
T Consensus 167 ff~~~~~~~ 175 (204)
T 4dmb_A 167 FYDSTAGKF 175 (204)
T ss_dssp HHHHTTTCC
T ss_pred HHHHHHHHh
Confidence 999999886
No 2
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=100.00 E-value=7.1e-45 Score=316.05 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=142.9
Q ss_pred CCCCChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHhhhhhhhhc
Q 043096 77 SSSSSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI--PGVDRERCIKIAIVHDIAEAIVG 154 (243)
Q Consensus 77 ~~~s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~--~~vD~~KvlkmALiHDL~Ea~tG 154 (243)
+..++++++++|+.++++||+++||||+.++ .++||||||||+||+||++++++ .++|++||++|||+||++|++||
T Consensus 5 ~~~~~l~~~~~Fl~~~~~LK~i~R~~~~~~~-~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tG 83 (200)
T 3kh1_A 5 FPESRLAAQMSFVVEIDKLKTILRQTLLTDS-SRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAG 83 (200)
T ss_dssp GGGHHHHHHHHHHHHGGGGGGCEEEEECTTS-SSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHC
T ss_pred cchHHHHHHHHHHHHHHhhCcCCcCCCcCCC-CCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhC
Confidence 3445799999999999999999999998655 57999999999999999999975 36999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH----HhcCc
Q 043096 155 DITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYE----MEHGK 230 (243)
Q Consensus 155 DI~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe----~~~~~ 230 (243)
||+++++..+..|+++|++|+++++++||++. +++|.+||.|||+++|+||+|||++|||+++|||++|+ ..+|.
T Consensus 84 Di~~~~~~~~~~~~~~E~~A~~~l~~~LP~~~-~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~~lqa~~~~g~~w~~~gv 162 (200)
T 3kh1_A 84 DTFIHDEAGNEDKEERERKAAARLFGLLPPDQ-AAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGV 162 (200)
T ss_dssp CCCTTCCC---CHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTC
T ss_pred CccccccccHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccCc
Confidence 99999887788899999999999999999865 58999999999999999999999999999999999998 45777
Q ss_pred cchhhhh
Q 043096 231 VLDEFFL 237 (243)
Q Consensus 231 ~l~ef~~ 237 (243)
.+++|+.
T Consensus 163 ~~~q~~~ 169 (200)
T 3kh1_A 163 TRAKVDK 169 (200)
T ss_dssp BHHHHHH
T ss_pred cHHHHHH
Confidence 8888885
No 3
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=100.00 E-value=3e-43 Score=300.05 Aligned_cols=142 Identities=28% Similarity=0.377 Sum_probs=127.8
Q ss_pred CChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHhhhhhhhhcCC
Q 043096 80 SSTSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDR---ERCIKIAIVHDIAEAIVGDI 156 (243)
Q Consensus 80 s~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~---~KvlkmALiHDL~Ea~tGDI 156 (243)
.++.++++|+.++++||+++||||+.+||.++||||||||+||+||++++++.++|+ +||++|||+||++|++||||
T Consensus 5 ~~~~~~~~Fl~~~~~LK~i~R~gw~~~gv~~~EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~~~GDi 84 (173)
T 1ynb_A 5 KPMDDVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDL 84 (173)
T ss_dssp --CHHHHHHHHHHHGGGGSBCGGGGGGTCSSCCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCCC
T ss_pred HhHHHHHHHHHHHHHhccCccCCcccCCCCCCCcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHhhccCC
Confidence 368899999999999999999999999988999999999999999999998789999 99999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhh
Q 043096 157 TPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFF 236 (243)
Q Consensus 157 ~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~ 236 (243)
+++++.... ..|++|+++++++| +|.+||.|||+ |||++|||++++||++|++. |.++++||
T Consensus 85 ~~~~k~~~~---~~E~~a~~~l~~~L-------e~~~Lw~Eye~-------~vk~~Dkle~llq~~ey~~~-~~~~~~f~ 146 (173)
T 1ynb_A 85 HKIARRYVS---CDEEGAREEQLSWM-------ESKPDFSDVEV-------YVSDADKLELAFQGVEYSQQ-VSYAIRFA 146 (173)
T ss_dssp CTTGGGTCC---CCHHHHHHHHTTTC-------SSCCCCGGGHH-------HHHHHHHHHHHHHHHHHTTT-CGGGGGGG
T ss_pred Ccccccccc---HHHHHHHHHHHHhh-------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh-cccHHHHH
Confidence 887542211 46888999988766 46789999987 99999999999999999999 99999999
Q ss_pred hhc
Q 043096 237 LST 239 (243)
Q Consensus 237 ~s~ 239 (243)
.|+
T Consensus 147 ~~~ 149 (173)
T 1ynb_A 147 ENV 149 (173)
T ss_dssp SSC
T ss_pred HHh
Confidence 887
No 4
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=100.00 E-value=1.6e-42 Score=297.26 Aligned_cols=146 Identities=40% Similarity=0.648 Sum_probs=132.7
Q ss_pred HHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHhhhhhhhhcCCCCC
Q 043096 85 AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCIKIAIVHDIAEAIVGDITPS 159 (243)
Q Consensus 85 ~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD~~KvlkmALiHDL~Ea~tGDI~~~ 159 (243)
-++|+.++++||+++||||+.+|++++||||||||+||+||++++.+ .++|++||++|||+||++|++|||||.+
T Consensus 9 ~~~Fl~~~~~Lk~v~R~~~~~~gv~~~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~~GDip~~ 88 (184)
T 1xx7_A 9 SIDLILLAGKLKRIPRMGWLIKGVPNPESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLS 88 (184)
T ss_dssp CHHHHHHHHHTTTSBCHHHHHHTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHH
T ss_pred HHHHHHHHHHhccCcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhhcCCCCCc
Confidence 47899999999999999999888888999999999999999999875 6899999999999999999999999543
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhhc
Q 043096 160 DGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLST 239 (243)
Q Consensus 160 d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~~s~ 239 (243)
. .....+++.|++++++++ ++|.+||.||++.+|+||++||++|||++++||++|...||..+++||.++
T Consensus 89 ~-~~~~~~~~~E~~a~~~ll---------~e~~~l~~eye~~~t~Ea~~vK~aDkl~a~lqa~~~~~~g~~~~~~~~~~~ 158 (184)
T 1xx7_A 89 A-QKYLNKEEAEAKALKDVL---------PEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNAL 158 (184)
T ss_dssp H-HTTSCHHHHHHHHHHHHC---------GGGHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHH
T ss_pred c-cchHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 2 334567789999999883 468899999999999999999999999999999999999999999999875
Q ss_pred c
Q 043096 240 A 240 (243)
Q Consensus 240 ~ 240 (243)
.
T Consensus 159 ~ 159 (184)
T 1xx7_A 159 E 159 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-39 Score=276.54 Aligned_cols=147 Identities=39% Similarity=0.633 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHhhhhhhhhcCCC
Q 043096 83 SSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCIKIAIVHDIAEAIVGDIT 157 (243)
Q Consensus 83 ~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD~~KvlkmALiHDL~Ea~tGDI~ 157 (243)
+++++|+.++++||+++||||+.+|++++|||||||||||++|++++.. .++|+++|+.|||+||++|+++||+|
T Consensus 2 ~~~~~F~~~~~~Lk~i~R~~~~~~g~~~~esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~~GD~p 81 (177)
T 2cqz_A 2 KVMIEKILLVQTLKRLPRMGWLIKGVQEPESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDIP 81 (177)
T ss_dssp --CHHHHHHHGGGGTSBCHHHHHTTCSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCC
T ss_pred chHHHHHHHHHHhccCccCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHcCCCc
Confidence 5678999999999999999999999888999999999999999999875 79999999999999999999999994
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhh
Q 043096 158 PSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFL 237 (243)
Q Consensus 158 ~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~~ 237 (243)
. .......++..|..+++++ | .++..+|.||++.+|+||++||++|||++++||++|...+|..+++||.
T Consensus 82 ~-~~~~~~~~~~~E~~a~~~~---l------~~i~~l~~ef~~~~t~Ea~~vk~aDrL~a~l~a~~~~~~~~~~~~~f~~ 151 (177)
T 2cqz_A 82 L-SAQEFVDKDKAEALVFKKV---F------PEFYELYREYQECSSPEAQLVRIADKLDMILQAYQYELSGNKNLDEFWE 151 (177)
T ss_dssp T-TTTTTSCHHHHHHHHHHHT---C------GGGHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGG
T ss_pred c-ccccHHHHHHHHHHHHHHH---H------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhhcCCccHHHHHH
Confidence 4 3344556778899998887 3 3678999999999999999999999999999999999999999999997
Q ss_pred hc
Q 043096 238 ST 239 (243)
Q Consensus 238 s~ 239 (243)
++
T Consensus 152 kl 153 (177)
T 2cqz_A 152 AI 153 (177)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 6
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=100.00 E-value=5.5e-38 Score=271.71 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=126.5
Q ss_pred HHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhC----C-C-CCCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096 85 AIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAG----D-I-PGVDRERCIKIAIVHDIAEAIVGDITP 158 (243)
Q Consensus 85 ~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla----~-~-~~vD~~KvlkmALiHDL~Ea~tGDI~~ 158 (243)
+++|+.++++||+++||||+ +|+ ++||||+|||+||++|++++ . + .++|++||++|||+||++|++||||++
T Consensus 5 ~~~f~~~~~rLK~i~R~~~~-~~~-~~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~ 82 (201)
T 2paq_A 5 QSHFFAHLSRLKLINRWPLM-RNV-RTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPT 82 (201)
T ss_dssp CCCHHHHHGGGGGCBSCTTS-CCS-SCCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCC
T ss_pred HHHHHHHHHhhccCccCCCC-CCC-CCccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCc
Confidence 46799999999999999998 676 89999999999999999997 2 3 379999999999999999999999987
Q ss_pred CCC----CChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 043096 159 SDG----VPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVL 232 (243)
Q Consensus 159 ~d~----~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l 232 (243)
+.+ .....+++.|+++++.+++.||++. +++|..+|.||+ .+|+||++||++|+|++++||++|.+.||..+
T Consensus 83 p~k~~~~~~~~~~~~~E~~~~~~i~~~Lp~~~-~~e~~~l~~e~e-~~t~ea~lvk~aD~l~a~lqa~e~~~~Gn~ef 158 (201)
T 2paq_A 83 PVKYFNSQIAQEYKAIEKIAQQKLVDMVPEEL-RDIFAPLIDEHA-YSDEEKSLVKQADALCAYLKCLEELAAGNNEF 158 (201)
T ss_dssp C---------CTHHHHHHHHHHHHHTTSCGGG-HHHHHHHHTTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred hHhhhchHHHHHhcccHHHHHHHHHHhCCHHH-HHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 652 2345567889899999999999875 599999999997 69999999999999999999999999998743
No 7
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=100.00 E-value=1.1e-36 Score=266.83 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHhhhhhhhhcCCCC
Q 043096 84 SAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI-----PGVDRERCIKIAIVHDIAEAIVGDITP 158 (243)
Q Consensus 84 ~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD~~KvlkmALiHDL~Ea~tGDI~~ 158 (243)
.+.+|+.++++||+|+||||+. + .++||||||||+||+||++++.+ .++|++||++|||+||++|++||||++
T Consensus 3 ~~~~Fl~~~~rLK~i~Rw~~~~-~-~~~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~t 80 (216)
T 3mzo_A 3 GIHQYFQSLSDLENIYRCPGKF-K-YQEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKT 80 (216)
T ss_dssp SHHHHHHHHHHGGGCBSSCSSC-C-SSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCS
T ss_pred cHHHHHHHHHhcCcccCcCCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCc
Confidence 3789999999999999999996 3 37999999999999999999832 469999999999999999999999988
Q ss_pred CCCC-C---hHHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 043096 159 SDGV-P---KEVKSRMEQEALNEMC-KVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV 231 (243)
Q Consensus 159 ~d~~-~---~~~K~~~E~~A~~~L~-~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~ 231 (243)
|.+- . ...+++.|+.++++++ ++||+++ .++|..+|.|+ +.+|+||++||++|||++++||++|+..||..
T Consensus 81 Pvk~~~~~~~~~~~~~E~~a~~~li~~~LP~~~-~~~~~~~~~e~-~~~t~ea~~vK~aDkl~~~lqa~~~~~~Gn~e 156 (216)
T 3mzo_A 81 PVKYATTELREMLSEVEESMTKNFISREIPATF-QPIYRHLLKEG-KDSTLEGKILAISDKVDLLYESFGEIQKGNPE 156 (216)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHHHHHHSCGGG-HHHHHHHHSCC-CSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 7642 2 2345688999999865 9999875 47888888884 67999999999999999999999999999875
No 8
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=99.95 E-value=7.9e-29 Score=216.46 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCC
Q 043096 82 TSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDG 161 (243)
Q Consensus 82 ~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~ 161 (243)
....++|+..+++||++.||||+.+|+ ++||||||||+||+||+++. .++| .|++.|||+||++|++||||+++.+
T Consensus 25 ~~~~i~i~dia~~Lk~i~R~~~~~~~~-~~eSVAeHS~~va~ia~~l~--~~~~-~r~~~~aL~HD~~E~~~GDi~tPvK 100 (207)
T 2gz4_A 25 SPLDVEIADIAHGLARVARWNGQTRGD-HAFTVAQHCLIVETIFCRMC--PGAT-PDEMQMALLHDAPEYVIGDMISPFK 100 (207)
T ss_dssp CGGGCCHHHHHHHHTTCBSGGGCCSSS-SCCBHHHHHHHHHHHHHHHC--TTCC-HHHHHHHHTTTTTHHHHCCCCGGGG
T ss_pred ChhhhhHHHHHHHHhhCcccCCCCCCC-CCccHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHhcCchHhhccCCChHhh
Confidence 345678999999999999999998885 79999999999999999987 4788 6899999999999999999998864
Q ss_pred -CChHHHHHHHHHHHHHHHH--HhCCCchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhhh
Q 043096 162 -VPKEVKSRMEQEALNEMCK--VLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLS 238 (243)
Q Consensus 162 -~~~~~K~~~E~~A~~~L~~--lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~llQa~eYe~~~~~~l~ef~~s 238 (243)
.....+++.|+++++.|+. .||+ ...+.|+++||++||+++++||++|..-...+..+||..
T Consensus 101 ~~l~~~yk~iE~~~~~~i~~~f~Lp~---------------~~~~~e~~lVK~aDkl~a~lea~~~~g~~~~e~~~~~~~ 165 (207)
T 2gz4_A 101 SVVGGGYKTVEKRLEAAVHLRFGLPP---------------HASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGL 165 (207)
T ss_dssp GTSCHHHHHHHHHHHHHHHHHTTCCS---------------SCCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCC---------------CCChHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHcCC
Confidence 2335677899999998887 5663 345689999999999999999997743222334456654
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=97.59 E-value=0.00031 Score=59.68 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh--CCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL--GGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lL--p~~~~~ 188 (243)
+...-+|+.+|+-+|..++...+.|++-+...||+||+ |+....+... .-.+.+.+++..+ |++. .
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDi-----g~~~~~~~~~------~~a~~a~~~L~~~g~~~~~-~ 90 (209)
T 3b57_A 23 TGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDY-----SDIKLTTDEQ------EATKTLINWMETKEIPSEL-I 90 (209)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTC-----CC-------C------HHHHHHHHHHHHTTCCHHH-H
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc-----CcccCCCchH------HHHHHHHHHHHHCCCCHHH-H
Confidence 44558999999999998886567899999999999998 5544322111 1111223333333 3211 1
Q ss_pred HHHHHHHHH--Hh------cCCChHHHHHHHHHHHHHH-----HHHHHHHHh
Q 043096 189 EEIQELWAE--YE------NNASIEANLVKDFDKVEMI-----LQALEYEME 227 (243)
Q Consensus 189 ~e~~~Lw~E--yE------~~~T~EAklVK~~DkLe~l-----lQa~eYe~~ 227 (243)
..+..+... |. ...|+|+++|.++|+|+++ ..+..|...
T Consensus 91 ~~V~~~I~~Hs~~~~~~~~~~~~~ea~iv~dAD~LDalgaigiaR~~~y~g~ 142 (209)
T 3b57_A 91 KKIIRIIQSVSFKKGKNTFKALTIEEKIVQDADRLDAIGAIGIARTFTYGGA 142 (209)
T ss_dssp HHHHHHHHHHC---------CCCHHHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccCCCCCCCCHHHHHHcCHHHHhHHHhHHHHHHHHHHHh
Confidence 233333322 11 3369999999999999964 466777543
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=97.39 E-value=0.00054 Score=59.57 Aligned_cols=108 Identities=20% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh--CCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL--GGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lL--p~~~~~ 188 (243)
+.-.-+|+.+|+-+|..++...++|.+.+...||+||++-.. ..+.. ... ...+.+++..+ |++ ..
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k-----~~~~~---~~g---a~~a~~~L~~~g~~~~-~i 90 (223)
T 3dto_A 23 SGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK-----LVDDP---ETA---KQQLIDWMEAAGVPSQ-KI 90 (223)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC---------------CHH---HHHHHHHHHTTTCCHH-HH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc-----cCCCH---HHH---HHHHHHHHHHcCCCHH-HH
Confidence 445679999999999988766689999999999999996321 11110 000 11123333332 211 11
Q ss_pred HHHHHHHHH--Hh-----cCCChHHHHHHHHHHHHH-----HHHHHHHHHhcCc
Q 043096 189 EEIQELWAE--YE-----NNASIEANLVKDFDKVEM-----ILQALEYEMEHGK 230 (243)
Q Consensus 189 ~e~~~Lw~E--yE-----~~~T~EAklVK~~DkLe~-----llQa~eYe~~~~~ 230 (243)
..+..+... |. ...|+|+++|.++|+|++ +..|+.|....|.
T Consensus 91 ~~V~~~I~~Hs~~~~~~~~p~tlEa~IV~dADrLDalGaiGiaR~f~~~g~~~~ 144 (223)
T 3dto_A 91 DHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQ 144 (223)
T ss_dssp HHHHHHHHCC----------CCHHHHHHHHHHHGGGSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCccCCCCCCCCHHHHHHHhHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 223333321 21 247999999999999994 7788999876543
No 11
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=97.31 E-value=0.00021 Score=62.87 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCC--CCChHHHHHHHHHHHHHHHHH----hCCCch
Q 043096 114 IADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSD--GVPKEVKSRMEQEALNEMCKV----LGGGMR 187 (243)
Q Consensus 114 VAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d--~~~~~~K~~~E~~A~~~L~~l----Lp~~~~ 187 (243)
.-+|+.+|+-+|..++...+.|.+.+...||+||++ +.+... +....... .+.+.+++.. +|++.
T Consensus 26 ~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig-----~~~~~~~~~~~H~~~g---a~~A~~~L~~~~~g~~~e~- 96 (239)
T 3gw7_A 26 DVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIV-----SLAKNHPQRQRSSILA---AEETRRLLREEFEQFPAEK- 96 (239)
T ss_dssp -CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTT-----C--------CCSSHHH---HHHHHHHHHHHTTSSCTTT-
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcc-----cccccCCccccHHHHH---HHHHHHHHHhccCCcCHHH-
Confidence 458999999999999887789999999999999994 332211 00001110 1112233332 34321
Q ss_pred HHHHHHHHHH--Hh---cCCChHHHHHHHHHHHHH-----HHHHHHHHHhcCc
Q 043096 188 AEEIQELWAE--YE---NNASIEANLVKDFDKVEM-----ILQALEYEMEHGK 230 (243)
Q Consensus 188 ~~e~~~Lw~E--yE---~~~T~EAklVK~~DkLe~-----llQa~eYe~~~~~ 230 (243)
.+.+..+... |. ...|+|+++|.++|+|++ +-.+..|....|.
T Consensus 97 i~~V~~~I~~Hs~~~~~~p~t~Ea~IV~DADrLDalGAiGIaR~f~y~g~~~~ 149 (239)
T 3gw7_A 97 IEAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGV 149 (239)
T ss_dssp TTSTTTGGGSSCTTSCCCCCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhHHHHHHhhchhHHHHHHHHHHhCC
Confidence 1222222211 21 347999999999999996 7889999876554
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=97.28 E-value=0.0019 Score=56.01 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh--CCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL--GGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lL--p~~~~~ 188 (243)
+.-.-+|+.+|+-+|..++...++|.+.+...||+||++-...+| ..... . ..+.+++..+ |++. .
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k~~~---h~~~g--a------~~a~~~L~~~g~~~~~-i 90 (223)
T 3djb_A 23 SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNE---SEEAG--M------KKVSDWLEELHVEEEE-S 90 (223)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCS---SSTTT--H------HHHHHHHHHTCCCHHH-H
T ss_pred CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccccCC---cHHHH--H------HHHHHHHHHCCCCHHH-H
Confidence 445679999999999998876789999999999999997422211 11111 0 1112222222 2110 1
Q ss_pred HHHHHHHHH--Hh-----cCCChHHHHHHHHHHHHH-----HHHHHHHHHhcCc
Q 043096 189 EEIQELWAE--YE-----NNASIEANLVKDFDKVEM-----ILQALEYEMEHGK 230 (243)
Q Consensus 189 ~e~~~Lw~E--yE-----~~~T~EAklVK~~DkLe~-----llQa~eYe~~~~~ 230 (243)
..+..+... |. ...|+|+++|.++|+|++ +..|+.|....|.
T Consensus 91 ~~V~~~I~~Hs~~~~~~~~p~tlea~iV~dADrLDalGaiGiaR~f~~~g~~~~ 144 (223)
T 3djb_A 91 KHVLHIIANMSYKGGHGGKVESIEGKLVQDADRLDALGAIGIARTFAYGGAKGR 144 (223)
T ss_dssp HHHHHHTTCCC-----------HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCccCCCCCCCCHHHHHHHhHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 222222211 11 246899999999999994 6778888866543
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=96.83 E-value=0.0024 Score=55.15 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh--CCCchH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL--GGGMRA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lL--p~~~~~ 188 (243)
..-.-+|+.+|+-+|..++...++|.+-+...||+||++ |. .... ... .-.....+++..+ |++ ..
T Consensus 28 ~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDig-----k~-k~~~--~~~---~ga~~a~~~L~~~g~~~~-~~ 95 (231)
T 2pjq_A 28 SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI-----DD-KLMA--NPA---KAHQDLIVQLNAQNVTAD-DQ 95 (231)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-----C---------------CHHHHHHHHHTTTCCHH-HH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC-----cc-cCCC--hHH---HHHHHHHHHHHHCCCCHH-HH
Confidence 445679999999999988875678999999999999985 31 1110 000 0111223333332 221 11
Q ss_pred HHHHHHHH--HHhc------CCChHHHHHHHHHHHHH-----HHHHHHHHHhc
Q 043096 189 EEIQELWA--EYEN------NASIEANLVKDFDKVEM-----ILQALEYEMEH 228 (243)
Q Consensus 189 ~e~~~Lw~--EyE~------~~T~EAklVK~~DkLe~-----llQa~eYe~~~ 228 (243)
..+..+.. .|.. ..|+|+++|.++|+|++ +..+..|....
T Consensus 96 ~~V~~~I~~Hs~~~~~~~~~~~~~ea~Iv~dAD~LDalgaigiaR~~~y~g~~ 148 (231)
T 2pjq_A 96 TAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHV 148 (231)
T ss_dssp HHHHHHHTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 23333332 1222 45899999999999986 34566666543
No 14
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=96.81 E-value=0.0057 Score=52.52 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh--CCCch
Q 043096 111 PESIADHMYRMALMALIA-GDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL--GGGMR 187 (243)
Q Consensus 111 ~ESVAEHS~~vAliAlll-a~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~E~~A~~~L~~lL--p~~~~ 187 (243)
+.-.-+|+.+|+-+|..+ +...++|.+.+...||+||++-...+ . .. .-...+.+++..+ |++ .
T Consensus 23 ~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~~~~--------~-~~---~ga~~a~~~L~~~g~~~~-~ 89 (225)
T 2qgs_A 23 TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLT--------D-EI---LAYDQLKQFLSTLDLSSE-I 89 (225)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSS--------C-HH---HHHHHHHHHHHTTTCCHH-H
T ss_pred CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCCCCC--------c-HH---HHHHHHHHHHHHCCCCHH-H
Confidence 455789999999999887 76667899999999999999742111 1 11 1112233444433 221 1
Q ss_pred HHHHHHHHH--HHhc------CCChHHHHHHHHHHHHH-----HHHHHHHHHhcCc
Q 043096 188 AEEIQELWA--EYEN------NASIEANLVKDFDKVEM-----ILQALEYEMEHGK 230 (243)
Q Consensus 188 ~~e~~~Lw~--EyE~------~~T~EAklVK~~DkLe~-----llQa~eYe~~~~~ 230 (243)
...+..+.. .|.. ..|+|+++|.++|+|++ +-.+..|....|.
T Consensus 90 i~~V~~~I~~Hs~~~~~~~~~~~~~e~~Iv~dAD~LDalGaigiaR~~~y~g~~~~ 145 (225)
T 2qgs_A 90 SQQVLYIIKHMSYRAGKNNHVKLSIDGEIVRDADRLDAIGAIGIARTFQFSGHFGE 145 (225)
T ss_dssp HHHHHHHHHTTC-------CCCCCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCcccCCCCCCCCCHHHHHHHhhHHHHHhhhHHHHHHHHHHHhcCC
Confidence 123434332 1222 45999999999999975 5667778765443
No 15
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=96.70 E-value=0.0062 Score=55.15 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHhhhhhhhhcCCCCC--CCCChHHHHHHHHHHH--HH-HHH
Q 043096 110 GPESIADHMYRMALMALIAGDIPGVDRER----CIKIAIVHDIAEAIVGDITPS--DGVPKEVKSRMEQEAL--NE-MCK 180 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~~vD~~K----vlkmALiHDL~Ea~tGDI~~~--d~~~~~~K~~~E~~A~--~~-L~~ 180 (243)
..+...+||.+||.+|..++...+++.+. +..-||+||++-+.+-+-.-. .....++......-.. .+ |..
T Consensus 163 ~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G~~~ll~ 242 (328)
T 3tm8_A 163 TDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQD 242 (328)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999998765666554 555899999997754332211 1112222111111110 11 222
Q ss_pred HhCCCchHHHHHHHHHHH-h--c----------CCChHHHHHHHHHHHHHHHHHHHHH
Q 043096 181 VLGGGMRAEEIQELWAEY-E--N----------NASIEANLVKDFDKVEMILQALEYE 225 (243)
Q Consensus 181 lLp~~~~~~e~~~Lw~Ey-E--~----------~~T~EAklVK~~DkLe~llQa~eYe 225 (243)
..+ . ..++......- | + +-+..|+++..+|.++++...-.|.
T Consensus 243 ~~~--~-~~~v~~~i~~HHEr~dGsGP~gl~g~~I~~~arIv~vaD~~dal~~~r~y~ 297 (328)
T 3tm8_A 243 KKH--F-DQTVINIIGQHEETINGTGPKGLREKDMDPLAVLVSSANAMDRLITFEGVP 297 (328)
T ss_dssp CTT--S-CHHHHHHHHHTTCCTBSCSTTCCBGGGSCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCC--C-cHHHHHHHHHhcCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 222 1 13444433322 1 2 3467899999999999998754443
No 16
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=96.59 E-value=0.0055 Score=57.07 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=83.5
Q ss_pred HHhhcccccccc---cccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHhhhhhhhhcCCCC------CC
Q 043096 91 LCHSLKTTKRKG---WINHGIKGPESIADHMYRMALMALIAGDIPGVDR-ERCIKIAIVHDIAEAIVGDITP------SD 160 (243)
Q Consensus 91 ~~~rLK~i~R~G---w~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~-~KvlkmALiHDL~Ea~tGDI~~------~d 160 (243)
...+|+++.--| ++..|. ..+--+||.+|+.+|..++...++|. +.+...||+||++-..-+.... .+
T Consensus 27 ~fqRLr~i~QlG~~~~v~p~a--~~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pfsh~~e~~~~~g~~ 104 (371)
T 2hek_A 27 PFQRLRYVKQLGLAYLVFPSA--QHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFSHTTEVLLPRERS 104 (371)
T ss_dssp HHHGGGGSBTTTTGGGTSTTC--CCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSSSCHHHHSTTSSS
T ss_pred HHhCccccCccCccceeeCCC--CCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCccccccchHHHhccCCC
Confidence 455677766656 444442 47889999999999998887667777 6788899999997643211110 11
Q ss_pred CCChHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHH--hcCCChHHHHHH---HHHHHHHHHHHHHHHHh--cCccc
Q 043096 161 GVPKEVKSRMEQEALNEMCKV-LGGGMRAEEIQELWAEY--ENNASIEANLVK---DFDKVEMILQALEYEME--HGKVL 232 (243)
Q Consensus 161 ~~~~~~K~~~E~~A~~~L~~l-Lp~~~~~~e~~~Lw~Ey--E~~~T~EAklVK---~~DkLe~llQa~eYe~~--~~~~l 232 (243)
..... ..-.++..+.+++.. ++.+ ..+.+..+...- ....+.++++|. ++||++.++.-..|... |+.++
T Consensus 105 He~~g-~~i~~~~~i~~iL~~~~~~~-~i~~I~~~I~~~~~~~~~~~l~~IVs~~lDaDRlDYl~RDs~~~g~~~g~~d~ 182 (371)
T 2hek_A 105 HEDFT-ERVIKETEIYEILKQDYSHE-DIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAYFCGVSYGFFDY 182 (371)
T ss_dssp CCCHH-HHHHHHSHHHHHHHTTSCHH-HHHHHHHHHHTCCSSHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred HHHHH-HHHHhcchHHHHHHHhCCHH-HHHHHHHHHhcCCCCcccchHHHHhcCCCCccccchhccchhhhcCCcCCcCH
Confidence 01111 111111222333332 2210 011144444421 002466899999 99999999998877754 34566
Q ss_pred hhhhhh
Q 043096 233 DEFFLS 238 (243)
Q Consensus 233 ~ef~~s 238 (243)
+....+
T Consensus 183 ~rll~~ 188 (371)
T 2hek_A 183 DRLIST 188 (371)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 665543
No 17
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=96.33 E-value=0.012 Score=49.80 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCChHHHHHH-HHHHHHHHHHHhCCCc-hH
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDGVPKEVKSRM-EQEALNEMCKVLGGGM-RA 188 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~~~~~~K~~~-E~~A~~~L~~lLp~~~-~~ 188 (243)
....-+|+.+|+.+|..++...+.|.+.+..-||+||++-....+ .+. .+.. -...+.+++..++-+. ..
T Consensus 31 ~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~~~~~----~~~----~H~~~ga~~a~~~L~~~~~~~~~i 102 (220)
T 2pq7_A 31 PAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEAL----TGV----DHAESGAEYASGLLPTMGFDISFV 102 (220)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHH----HCC----CHHHHHHHHHHHHGGGGTCCHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCcccCC----CcC----CHHHHHHHHHHHHHHHCCCCHHHH
Confidence 556789999999999988875578999999999999995322100 000 0100 1111222333222110 01
Q ss_pred HHHHHHHHH--H---hcCCChHHHHHHHHHHHHHH-----HHHHHHHHh
Q 043096 189 EEIQELWAE--Y---ENNASIEANLVKDFDKVEMI-----LQALEYEME 227 (243)
Q Consensus 189 ~e~~~Lw~E--y---E~~~T~EAklVK~~DkLe~l-----lQa~eYe~~ 227 (243)
..+..+... + ....++|+++|.++|+|+.+ -.+++|...
T Consensus 103 ~~v~~~I~~H~~~~~~~~~~~~a~Iv~dAD~Ldal~a~~i~r~~~~~~~ 151 (220)
T 2pq7_A 103 AEVSKAIRSHRYSGGLTPTSLTGKILQDADRLDAIGAVAIARVFSYSGK 151 (220)
T ss_dssp HHHHHHHHHCC-----CCCSHHHHHHHHHHHGGGSSHHHHHHHHHC---
T ss_pred HHHHHHHHHcCcccCCCCCCHHHHHHHHhhHHhhccchHHHHHHHHHHh
Confidence 223333221 1 13458999999999999964 455666543
No 18
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.07 E-value=0.0085 Score=49.74 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
+..-+||.+||.+|..+|...++|.+++...+|+||++-.
T Consensus 17 ~~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 17 EHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 4688999999999999987778999999999999999875
No 19
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=94.99 E-value=0.0092 Score=49.60 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhh
Q 043096 113 SIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAI 152 (243)
Q Consensus 113 SVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~ 152 (243)
..-+||.+||.+|..+|...++|.+++...+|+||++-..
T Consensus 19 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 19 KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 4678999999999999877789999999999999998653
No 20
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=94.89 E-value=0.01 Score=49.76 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
+..-+||.+||.+|..+|...++|.+++...+|+||++-.
T Consensus 25 ~~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 5688999999999999987778999999999999999875
No 21
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=94.21 E-value=0.062 Score=47.65 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHhhhhhhhhcCC
Q 043096 111 PESIADHMYRMALMALIAGDIPGV-DRERCIKIAIVHDIAEAIVGDI 156 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~v-D~~KvlkmALiHDL~Ea~tGDI 156 (243)
.+..-.||.++|.+|..++...+. |.+.+...+|+||++.+..-+.
T Consensus 116 ~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIGkl~l~~~ 162 (305)
T 3hc1_A 116 RSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFF 162 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhHHHHHHH
Confidence 467899999999999988865444 8999999999999999887543
No 22
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=93.31 E-value=0.77 Score=42.83 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIA 149 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~ 149 (243)
-|--+||..||.+|-.++...++|.+-+-..||+|||+
T Consensus 74 ~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 74 RTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57789999999999988876788988888899999997
No 23
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=90.52 E-value=2.6 Score=35.09 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCC
Q 043096 82 TSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSDG 161 (243)
Q Consensus 82 ~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d~ 161 (243)
+.+.+.|...++. ...|.+- .-|.--.|-..||.+.. .+ .++.-..++.-||+||+.|- ++++
T Consensus 7 l~~A~~~A~~aH~--gQ~rk~~------~G~PYi~Hpl~VA~il~--~~-~~~~d~~~i~AALLHDvvED--t~~t---- 69 (178)
T 3nr1_A 7 LLEAADFAARKHR--QQRRKDP------EGTPYINHPIGVARILT--HE-AGITDIVVLQAALLHDTVED--TDTT---- 69 (178)
T ss_dssp HHHHHHHHHHHTT--TCBCSST------TCCBTTHHHHHHHHHHH--HT-SCCCCHHHHHHHHHTTHHHH--SSCC----
T ss_pred HHHHHHHHHHHcc--cCcCCCC------CCCcHHHHHHHHHHHHH--HH-cCCCCHHHHHHHHhhhHHhc--CCCC----
Confidence 4455556655553 3333220 12445589998885531 23 24433568888999999994 2222
Q ss_pred CChHHHHHHHHH---HHHHHHHHhCCC--chHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 043096 162 VPKEVKSRMEQE---ALNEMCKVLGGG--MRAEEIQELWAEYENNASIEANLVKDFDKVEMIL 219 (243)
Q Consensus 162 ~~~~~K~~~E~~---A~~~L~~lLp~~--~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~ll 219 (243)
.+ ..++. .+..++..+-.. +...+-.....|.-....+.+.+||.+|++..|-
T Consensus 70 --~e---~i~~~FG~~Va~lV~gvTk~~~~~~~~~~~~q~e~~~~~d~rvvlIKLADRl~NmR 127 (178)
T 3nr1_A 70 --LD---EVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLR 127 (178)
T ss_dssp --HH---HHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred --HH---HHHHHHCHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 11 12221 223344443321 1111212222222245889999999999999974
No 24
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=89.27 E-value=0.18 Score=44.10 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhc
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVG 154 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tG 154 (243)
.+..-.||.++|.+|..++...+.|.+++...+|+||++....-
T Consensus 103 ~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiGkl~l~ 146 (275)
T 3m1t_A 103 LADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIV 146 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccHHHHH
Confidence 35688999999999999887667899999999999999998753
No 25
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=88.34 E-value=3.4 Score=34.33 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhhhhcCCCCCC
Q 043096 81 STSSAIDFLTLCHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEAIVGDITPSD 160 (243)
Q Consensus 81 ~~~~~i~Fl~~~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea~tGDI~~~d 160 (243)
.+...+.|....+. ...|.+- ..+.--.|-..||.| ++...+++-..++.-||+||+.|- ++++.
T Consensus 8 ~l~~A~~~A~~~H~--gQ~rk~~------~G~pyi~Hpl~VA~i---la~~l~~~D~~~i~AAlLHDvvED--t~~t~-- 72 (179)
T 3nqw_A 8 KFMECLQYAAFKHR--QQRRKDP------QETPYVNHVINVSTI---LSVEACITDEGVLMAALLHDVVED--TDASF-- 72 (179)
T ss_dssp HHHHHHHHHHHHST--TCBCSSS------SCCBTHHHHHHHHHH---HHTTTCCCCHHHHHHHHTTTHHHH--SSCCH--
T ss_pred HHHHHHHHHHHHhc--cCcCCCC------CCCcHHHHHHHHHHH---HHHHcCCCCHHHHHHHHhhhHHhc--CCCCH--
Confidence 35556666555543 3333210 134456899988854 442235522458888999999994 22221
Q ss_pred CCChHHHHHHHHH---HHHHHHHHhCCC--chHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 043096 161 GVPKEVKSRMEQE---ALNEMCKVLGGG--MRAEEIQELWAEYENNASIEANLVKDFDKVEMIL 219 (243)
Q Consensus 161 ~~~~~~K~~~E~~---A~~~L~~lLp~~--~~~~e~~~Lw~EyE~~~T~EAklVK~~DkLe~ll 219 (243)
+ ..++. .+..++..+-.. +...+-.....|--..+.+.+.+||.+|++..|-
T Consensus 73 ----e---~i~~~FG~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~~d~rvvlIKLADRl~NmR 129 (179)
T 3nqw_A 73 ----E---DVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLR 129 (179)
T ss_dssp ----H---HHHHHHCHHHHHHHHHTCCCTTSCHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHH
T ss_pred ----H---HHHHHHCHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1 12221 233344443321 1111211222222235789999999999999874
No 26
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=88.31 E-value=0.36 Score=42.45 Aligned_cols=44 Identities=5% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHhhhhhhhhcC
Q 043096 112 ESIADHMYRMALMALIAGDIPGV-DRERCIKIAIVHDIAEAIVGD 155 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~v-D~~KvlkmALiHDL~Ea~tGD 155 (243)
+..-.||.++|.+|..++...+. |.+++...+|+||++....-.
T Consensus 107 ~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agLLhdiGkl~l~~ 151 (288)
T 3ljx_A 107 AAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALAT 151 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccHHHHHH
Confidence 44789999999999998865444 899999999999999987644
No 27
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=86.05 E-value=0.81 Score=43.12 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=77.4
Q ss_pred HHHhhccccccccc---ccCCCCCCCCHHHHHHHHHHHHHHhCCC-----CCCC---HHHHHHHHHHhhhhhh---hhcC
Q 043096 90 TLCHSLKTTKRKGW---INHGIKGPESIADHMYRMALMALIAGDI-----PGVD---RERCIKIAIVHDIAEA---IVGD 155 (243)
Q Consensus 90 ~~~~rLK~i~R~Gw---~~~gV~~~ESVAEHS~~vAliAllla~~-----~~vD---~~KvlkmALiHDL~Ea---~tGD 155 (243)
....||+++.--|. +..|- .-|=-+||..|+-+|-.++.. .++| .+.+...||+||++=. -+|+
T Consensus 31 ~~fqRL~~~~Qlg~~~~v~p~a--~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh~PfsH~~E 108 (410)
T 2q14_A 31 PLLQRLTRIKQVGLSSVVYPGA--QHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPFSHVLE 108 (410)
T ss_dssp HHHHGGGGSBTTTTTTTTCTTC--CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTCCTTHHHHH
T ss_pred HHHHhHhhhhccCCceeecCCC--CCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCccccccH
Confidence 45678888877663 44442 349999999999999876642 1244 4778889999999631 1221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCChHHHHHH---HHHHHHHHHHHHHHHH--hcCc
Q 043096 156 ITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVK---DFDKVEMILQALEYEM--EHGK 230 (243)
Q Consensus 156 I~~~d~~~~~~K~~~E~~A~~~L~~lLp~~~~~~e~~~Lw~EyE~~~T~EAklVK---~~DkLe~llQa~eYe~--~~~~ 230 (243)
-.-..+..-+. .-...++.+...+++.+ ....+++.. ....+.++++|. ++||++-++.-..+.. -|+.
T Consensus 109 ~~~~~~~~He~---~s~~ii~~l~~~i~~~L--~~~~~ii~g-~~~~~~l~~ivs~~ldaDr~DYL~RDa~~~Gv~~G~~ 182 (410)
T 2q14_A 109 DTIVQGVSHEE---ISLMLMERMNKEMNGQL--SLAIQIFKD-EYPKRFLHQLVSGQLDMDRLDYLRRDSFYTGVTEGNI 182 (410)
T ss_dssp TTTSTTCCHHH---HHHHHHHHHHHHTTTTT--HHHHHHHTT-CSSSTHHHHHHSSTTCHHHHHHHHHHHHHHCCGGGCC
T ss_pred HhhcCCCCHHH---HHHHHHHHhhhhHHHHH--HHHHHHHcC-CCccchHHHhhcCCcCcHHHHHhcchHHHhCCCCCCC
Confidence 11111111111 11122223333344322 222333322 123678999999 9999999988554432 1334
Q ss_pred cchhhh
Q 043096 231 VLDEFF 236 (243)
Q Consensus 231 ~l~ef~ 236 (243)
+++...
T Consensus 183 d~~Rii 188 (410)
T 2q14_A 183 GSARII 188 (410)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 455444
No 28
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=82.99 E-value=0.76 Score=40.02 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHhCCC-------CCCCHHHHHHHHHHhhhhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDI-------PGVDRERCIKIAIVHDIAEAIV 153 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~-------~~vD~~KvlkmALiHDL~Ea~t 153 (243)
+..-.||.++|.+|..++.. .+.|.+++...+|+||++....
T Consensus 116 ~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~l 164 (281)
T 3i7a_A 116 DEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPV 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHHH
Confidence 44789999999999987742 5789999999999999998754
No 29
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=77.60 E-value=1.2 Score=38.89 Aligned_cols=44 Identities=7% Similarity=-0.070 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhhhhhhhhcC
Q 043096 112 ESIADHMYRMALMALIAGD-IPGVDRERCIKIAIVHDIAEAIVGD 155 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~-~~~vD~~KvlkmALiHDL~Ea~tGD 155 (243)
+..-.||.++|.+|..++. ..+.|.+++..-+|+||++....-+
T Consensus 123 ~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDIGkl~l~~ 167 (297)
T 1vqr_A 123 QNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSN 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHccHHHHHH
Confidence 4577899999999887665 3457889999999999999988643
No 30
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=74.29 E-value=2.2 Score=40.06 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHhhhhhhhhc
Q 043096 110 GPESIADHMYRMALMALIAGDIP----GVDRERCIKIAIVHDIAEAIVG 154 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAllla~~~----~vD~~KvlkmALiHDL~Ea~tG 154 (243)
..+..-.||.++|.+|..++... ..|.+.+...+|+||++....-
T Consensus 275 ~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~ 323 (457)
T 3mem_A 275 GYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLA 323 (457)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHH
Confidence 35789999999999999888542 3588999999999999998864
No 31
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=68.56 E-value=6 Score=37.03 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh
Q 043096 112 ESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA 151 (243)
Q Consensus 112 ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea 151 (243)
|.--.|-..||.+ ++++ +.|.+ ++.-||+||..|-
T Consensus 48 ePYi~Hpl~VA~i---La~l-~~D~~-~i~AALLHDvvED 82 (393)
T 1vj7_A 48 EPYIVHPIQVAGI---LADL-HLDAV-TVACGFLHDVVED 82 (393)
T ss_dssp CBTTHHHHHHHHH---HHHT-TCCHH-HHHHHHHTTHHHH
T ss_pred CcHHHHHHHHHHH---HHHh-cCCHH-HHHHHHhhhHHhc
Confidence 4456899988866 3332 45654 7788999999984
No 32
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=61.03 E-value=8.8 Score=37.01 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHhhccccccccc---ccCCCCCCCCHHHHHHHHHHHHHHhCCC-----C-------CCC---HHHHHHHHHHhhhh
Q 043096 90 TLCHSLKTTKRKGW---INHGIKGPESIADHMYRMALMALIAGDI-----P-------GVD---RERCIKIAIVHDIA 149 (243)
Q Consensus 90 ~~~~rLK~i~R~Gw---~~~gV~~~ESVAEHS~~vAliAllla~~-----~-------~vD---~~KvlkmALiHDL~ 149 (243)
....||+++.--|. +..| ..-|=-+||..|+-+|-.++.. . +++ ..-+...||+|||+
T Consensus 62 ~~FqRLr~i~QlG~~~~v~pg--a~HTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 62 AEVQRLRRIKQLGTSSFTFHG--AEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHGGGGSBSSTTGGGTSTT--CCCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHhhhhhhcccccceecCC--CCcCHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 45678888877663 4444 2458999999999998765421 0 133 23345789999995
No 33
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=47.97 E-value=14 Score=36.03 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHhhcccccccc---cccCCCCCCCCHHHHHHHHHHHHHHhCCC-------CCCCH---HHHHHHHHHhhhh
Q 043096 90 TLCHSLKTTKRKG---WINHGIKGPESIADHMYRMALMALIAGDI-------PGVDR---ERCIKIAIVHDIA 149 (243)
Q Consensus 90 ~~~~rLK~i~R~G---w~~~gV~~~ESVAEHS~~vAliAllla~~-------~~vD~---~KvlkmALiHDL~ 149 (243)
....||+++.=-| ++..|- .-|=-+||..|+-+|-.++.. .+++. .-+...||+|||+
T Consensus 41 ~~FqRLr~i~Qlg~~~~v~pga--~hTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 41 PQFQRLRYIKQLGGGYYVFPGA--SHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHGGGGSBTTGGGTTTCTTC--CCBHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHhhccCccccCCcccccCCC--CcCHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 4456777777666 344442 358899999999998765431 12333 2345579999996
No 34
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=42.89 E-value=24 Score=31.35 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhhhhhh----------hhcCCCCC
Q 043096 111 PESIADHMYRMALMALIAGDIPGVDRERCIKIAIVHDIAEA----------IVGDITPS 159 (243)
Q Consensus 111 ~ESVAEHS~~vAliAllla~~~~vD~~KvlkmALiHDL~Ea----------~tGDI~~~ 159 (243)
.-+=-+|++++|-.|--- +-|.+-+...||+|||+-+ ++||..+.
T Consensus 57 ~v~ql~HaLQTAe~ar~d----g~d~dw~~laaLlHDLGkll~~~~~~qW~vvgdtfpv 111 (250)
T 2ibn_A 57 DFPNSFHAFQTAEGIRKA----HPDKDWFHLVGLLHDLGKVLALFGEPQWAVVGDTFPV 111 (250)
T ss_dssp CCCHHHHHHHHHHHHHHH----STTCHHHHHHHHHTTGGGHHHHTTCCGGGTSSCCCBS
T ss_pred cccHHHHHHHHHHHHHHh----CcChhHHHHHHHHhccHhhhcccCCcchhhccCcccc
Confidence 455579999999776433 4566778899999999985 58887763
No 35
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=39.09 E-value=26 Score=32.98 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=31.4
Q ss_pred CCCHHHHHHH-HHHHHHHhCC-CCC-CCHH--HHHHHHHHhhhhhhh
Q 043096 111 PESIADHMYR-MALMALIAGD-IPG-VDRE--RCIKIAIVHDIAEAI 152 (243)
Q Consensus 111 ~ESVAEHS~~-vAliAllla~-~~~-vD~~--KvlkmALiHDL~Ea~ 152 (243)
+=-..||+.. |+.+|.-++. +.. .+++ -++.-||+|||+-++
T Consensus 73 ~GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 73 LCSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 3447899999 9999987764 332 2334 568899999999886
No 36
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=21.11 E-value=48 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHh------------CCCCCCCH----HHHHHHHHHhhhhhh
Q 043096 110 GPESIADHMYRMALMALIA------------GDIPGVDR----ERCIKIAIVHDIAEA 151 (243)
Q Consensus 110 ~~ESVAEHS~~vAliAlll------------a~~~~vD~----~KvlkmALiHDL~Ea 151 (243)
.-..+..|+.-||-+|..+ +...+++. +-+..++.+|||+=.
T Consensus 22 ~~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~ 79 (265)
T 3sk9_A 22 PFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKA 79 (265)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccc
Confidence 4688999999999998874 22224553 345668899999876
No 37
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=20.27 E-value=53 Score=31.12 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=34.0
Q ss_pred HhhcccccccccccCCCCCCCCHHHHHHHHHHHHHHhCCC---------C------CCCHH----HHHHHHHHhhhh
Q 043096 92 CHSLKTTKRKGWINHGIKGPESIADHMYRMALMALIAGDI---------P------GVDRE----RCIKIAIVHDIA 149 (243)
Q Consensus 92 ~~rLK~i~R~Gw~~~gV~~~ESVAEHS~~vAliAllla~~---------~------~vD~~----KvlkmALiHDL~ 149 (243)
..||+++.=-|-...+ ...-|=-+||..|+-+|--++.. . +++.+ -+-..||.|||+
T Consensus 44 frRL~~ktQv~~~~~~-~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiG 119 (444)
T 3bg2_A 44 FRSLQDKTQVIPLSKT-DFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG 119 (444)
T ss_dssp HHHGGGCBCSCC---C-CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HhhhccCCccCCCCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhcccC
Confidence 4566665554444322 23678899999999988644321 1 22322 345689999996
Done!