BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043097
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMA-KLIQEPQMAKKMGENARH 106
+MA P I GG E I++ G+LC A +L+++ ++ + MGE AR
Sbjct: 304 AMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARE 363
Query: 107 HVMESF-STKIFGQH 120
V E F S KI Q+
Sbjct: 364 SVYEQFRSEKIVSQY 378
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMA-KLIQEPQMAKKMGENARH 106
+MA P I GG E I++ G+LC A +L+++ ++ + MGE AR
Sbjct: 324 AMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARE 383
Query: 107 HVMESF-STKIFGQH 120
V E F S KI Q+
Sbjct: 384 SVYEQFRSEKIVSQY 398
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKK 99
P + A+ KPVIA + GG ET+ NE G+L N E + K+ + P KK
Sbjct: 114 PIEAXASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAXKKVSKNPDKFKK 168
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPT-PQEFSLSMAKLIQEPQMAKKMGEN 103
P +MA+ P + +GGP E + G L +P P++ + + K + + E
Sbjct: 375 PVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEK 434
Query: 104 ARHHVMESFS 113
+ V E ++
Sbjct: 435 GKQRVEERYT 444
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 54 PVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFS 113
PVIA SGG ET+ + + S + +L+ +P MG R HV +S
Sbjct: 305 PVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWS 364
Query: 114 TKIFGQHLNRLL 125
+I G+ L +L
Sbjct: 365 WEIMGERLTNIL 376
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 54 PVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFS 113
PVIA SGG ET+ + + S + +L+ +P MG R HV +S
Sbjct: 305 PVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWS 364
Query: 114 TKIFGQHLNRLL 125
+I G+ L +L
Sbjct: 365 WEIMGERLTNIL 376
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 36 AVNVYQFDKPHSSMAAYKPVI---------------ACDSGGPVETIKNEVVGFLCNPTP 80
V Y DKP ++M K I +SG PV KNEV+G P
Sbjct: 130 TVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP 189
Query: 81 QEFS 84
EF+
Sbjct: 190 NEFN 193
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 36 AVNVYQFDKPHSSMAAYKPVI---------------ACDSGGPVETIKNEVVGFLCNPTP 80
V Y DKP ++M K I +SG PV KNEV+G P
Sbjct: 130 TVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP 189
Query: 81 QEFS 84
EF+
Sbjct: 190 NEFN 193
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 78 PTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESF 112
PTPQ+F+ S+A++ EP + M HV+ +
Sbjct: 216 PTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTL 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,515,795
Number of Sequences: 62578
Number of extensions: 124541
Number of successful extensions: 282
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 9
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)