Query 043097
Match_columns 134
No_of_seqs 135 out of 1489
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15427 colanic acid biosynth 99.9 3.9E-21 8.4E-26 138.1 13.0 122 3-127 255-405 (406)
2 TIGR03088 stp2 sugar transfera 99.9 1.2E-20 2.6E-25 133.8 13.5 124 3-129 231-374 (374)
3 cd03813 GT1_like_3 This family 99.8 1.3E-19 2.8E-24 132.5 13.2 124 3-126 326-475 (475)
4 TIGR02470 sucr_synth sucrose s 99.8 3.8E-19 8.2E-24 134.6 13.2 124 2-125 582-745 (784)
5 TIGR03449 mycothiol_MshA UDP-N 99.8 8.9E-19 1.9E-23 125.4 14.0 127 3-130 254-404 (405)
6 cd04962 GT1_like_5 This family 99.8 9.2E-19 2E-23 123.6 13.7 123 3-128 229-371 (371)
7 KOG0853 Glycosyltransferase [C 99.8 1.2E-18 2.6E-23 125.3 14.1 117 13-129 328-469 (495)
8 TIGR02472 sucr_P_syn_N sucrose 99.8 6.7E-19 1.5E-23 127.6 12.8 110 17-126 304-439 (439)
9 PLN00142 sucrose synthase 99.8 8.6E-19 1.9E-23 132.8 13.4 124 2-125 605-768 (815)
10 TIGR02468 sucrsPsyn_pln sucros 99.8 8E-19 1.7E-23 135.5 13.2 116 15-131 533-674 (1050)
11 PLN02949 transferase, transfer 99.8 1.9E-18 4.1E-23 125.8 14.1 127 3-131 305-460 (463)
12 PRK15490 Vi polysaccharide bio 99.8 1.3E-18 2.7E-23 127.3 12.5 122 3-127 431-575 (578)
13 TIGR02918 accessory Sec system 99.8 1.2E-18 2.7E-23 127.8 12.5 121 3-128 352-500 (500)
14 TIGR02149 glgA_Coryne glycogen 99.8 1.8E-18 4E-23 123.0 12.2 86 44-129 296-388 (388)
15 cd03805 GT1_ALG2_like This fam 99.8 2.9E-18 6.4E-23 122.1 12.6 119 3-121 247-392 (392)
16 cd04946 GT1_AmsK_like This fam 99.8 2.1E-18 4.6E-23 124.0 11.4 107 16-122 275-406 (407)
17 PRK15484 lipopolysaccharide 1, 99.8 6.9E-18 1.5E-22 120.4 13.4 85 44-129 293-379 (380)
18 cd05844 GT1_like_7 Glycosyltra 99.8 6.3E-18 1.4E-22 119.2 12.5 118 3-123 221-366 (367)
19 PRK15179 Vi polysaccharide bio 99.8 2E-18 4.4E-23 130.1 10.5 122 2-126 549-692 (694)
20 cd03818 GT1_ExpC_like This fam 99.8 4.1E-18 8.8E-23 122.0 11.7 79 44-122 316-395 (396)
21 cd03796 GT1_PIG-A_like This fa 99.8 1E-17 2.2E-22 120.0 13.6 125 3-131 226-371 (398)
22 PRK10307 putative glycosyl tra 99.8 8.7E-18 1.9E-22 120.8 12.5 124 2-131 260-411 (412)
23 PLN02871 UDP-sulfoquinovose:DA 99.8 1.1E-17 2.4E-22 122.1 12.6 86 44-130 347-437 (465)
24 cd03825 GT1_wcfI_like This fam 99.7 2.2E-17 4.7E-22 116.1 11.5 101 28-128 264-365 (365)
25 cd03792 GT1_Trehalose_phosphor 99.7 3.9E-17 8.5E-22 116.0 12.1 83 44-127 289-371 (372)
26 cd03807 GT1_WbnK_like This fam 99.7 1.4E-16 3E-21 111.0 12.4 120 3-126 226-365 (365)
27 cd03800 GT1_Sucrose_synthase T 99.7 1.5E-16 3.2E-21 113.2 12.7 120 3-122 253-397 (398)
28 PLN02939 transferase, transfer 99.7 2.1E-16 4.5E-21 121.1 13.9 127 2-131 809-970 (977)
29 PHA01630 putative group 1 glyc 99.7 1.4E-16 3E-21 111.8 11.5 101 27-127 208-330 (331)
30 cd04949 GT1_gtfA_like This fam 99.7 1.2E-16 2.5E-21 113.3 10.7 115 3-121 237-372 (372)
31 PRK09922 UDP-D-galactose:(gluc 99.7 1.4E-16 3E-21 112.8 10.9 122 3-130 212-358 (359)
32 PRK00654 glgA glycogen synthas 99.7 1.5E-16 3.3E-21 116.2 11.5 124 2-130 312-465 (466)
33 PLN02316 synthase/transferase 99.7 5.1E-16 1.1E-20 120.4 13.9 128 2-129 870-1035(1036)
34 cd04955 GT1_like_6 This family 99.7 3.8E-16 8.2E-21 109.8 12.2 79 44-126 284-363 (363)
35 PRK14099 glycogen synthase; Pr 99.7 1.7E-16 3.6E-21 116.4 10.4 85 44-131 385-482 (485)
36 TIGR02095 glgA glycogen/starch 99.7 1.9E-16 4.2E-21 115.8 10.7 82 44-128 381-473 (473)
37 cd03814 GT1_like_2 This family 99.7 5.4E-16 1.2E-20 108.5 11.7 96 30-126 268-364 (364)
38 cd03799 GT1_amsK_like This is 99.7 4.6E-16 9.9E-21 109.0 11.2 77 44-120 277-354 (355)
39 PRK10125 putative glycosyl tra 99.7 3E-16 6.6E-21 112.8 10.5 95 28-128 306-405 (405)
40 cd03822 GT1_ecORF704_like This 99.7 9.7E-16 2.1E-20 107.3 12.3 81 44-126 285-366 (366)
41 cd03795 GT1_like_4 This family 99.7 4.7E-16 1E-20 109.0 10.7 112 3-117 220-356 (357)
42 cd03806 GT1_ALG11_like This fa 99.7 6.3E-16 1.4E-20 111.6 11.5 117 2-119 274-418 (419)
43 cd03821 GT1_Bme6_like This fam 99.7 1.1E-15 2.3E-20 106.9 12.3 118 3-122 236-374 (375)
44 cd04951 GT1_WbdM_like This fam 99.7 1.4E-15 3E-20 106.7 12.9 118 3-126 221-359 (360)
45 cd03808 GT1_cap1E_like This fa 99.7 1E-15 2.2E-20 106.3 12.1 79 44-122 279-358 (359)
46 cd03801 GT1_YqgM_like This fam 99.7 1.5E-15 3.2E-20 105.5 12.0 83 44-126 291-374 (374)
47 PF13524 Glyco_trans_1_2: Glyc 99.7 6.6E-16 1.4E-20 89.5 8.3 78 44-122 14-91 (92)
48 cd03816 GT1_ALG1_like This fam 99.7 1.3E-15 2.9E-20 109.8 11.4 112 3-120 271-409 (415)
49 cd03819 GT1_WavL_like This fam 99.7 8.6E-16 1.9E-20 107.8 10.2 115 3-117 218-355 (355)
50 cd03820 GT1_amsD_like This fam 99.7 2.3E-15 4.9E-20 104.2 12.0 116 3-122 211-347 (348)
51 cd03802 GT1_AviGT4_like This f 99.7 2.7E-15 5.9E-20 104.5 12.0 76 44-126 260-335 (335)
52 TIGR03087 stp1 sugar transfera 99.6 3.6E-15 7.9E-20 106.9 10.9 82 44-126 314-395 (397)
53 PRK14098 glycogen synthase; Pr 99.6 4.2E-15 9.1E-20 109.2 11.2 123 2-130 337-488 (489)
54 cd03791 GT1_Glycogen_synthase_ 99.6 3E-15 6.5E-20 109.5 9.4 80 44-126 386-475 (476)
55 cd03794 GT1_wbuB_like This fam 99.6 1.8E-14 3.9E-19 101.1 11.7 77 45-121 316-393 (394)
56 cd03798 GT1_wlbH_like This fam 99.6 1.5E-14 3.2E-19 100.8 11.2 108 19-128 248-377 (377)
57 cd03809 GT1_mtfB_like This fam 99.6 3.1E-14 6.8E-19 99.7 11.8 115 3-122 228-364 (365)
58 cd03823 GT1_ExpE7_like This fa 99.6 5.9E-14 1.3E-18 97.9 11.4 93 30-126 264-358 (359)
59 cd03817 GT1_UGDG_like This fam 99.6 1E-13 2.2E-18 96.9 12.2 117 3-127 235-373 (374)
60 cd03804 GT1_wbaZ_like This fam 99.5 8.7E-14 1.9E-18 98.0 10.6 76 42-121 274-350 (351)
61 PF00534 Glycos_transf_1: Glyc 99.5 2.3E-14 5.1E-19 91.5 6.8 64 44-107 108-172 (172)
62 PHA01633 putative glycosyl tra 99.5 1.3E-13 2.8E-18 96.7 10.2 92 30-123 225-335 (335)
63 PLN02846 digalactosyldiacylgly 99.5 2.5E-13 5.4E-18 98.6 10.9 112 3-126 261-390 (462)
64 cd03811 GT1_WabH_like This fam 99.5 5.5E-13 1.2E-17 92.3 10.7 108 3-113 222-352 (353)
65 cd03812 GT1_CapH_like This fam 99.4 4.8E-13 1E-17 94.0 8.4 102 3-108 225-346 (358)
66 cd03793 GT1_Glycogen_synthase_ 99.4 1.9E-12 4.1E-17 95.5 10.6 100 30-130 476-589 (590)
67 KOG1111 N-acetylglucosaminyltr 99.4 2.9E-12 6.3E-17 88.9 9.9 122 3-131 228-370 (426)
68 PLN02501 digalactosyldiacylgly 99.4 5.7E-12 1.2E-16 94.6 11.0 110 3-125 579-707 (794)
69 cd03788 GT1_TPS Trehalose-6-Ph 99.4 1.2E-11 2.6E-16 90.4 11.6 79 42-124 374-458 (460)
70 TIGR02400 trehalose_OtsA alpha 99.3 3.1E-11 6.7E-16 88.1 12.0 84 38-125 365-454 (456)
71 PRK05749 3-deoxy-D-manno-octul 99.3 2.2E-11 4.8E-16 88.2 11.2 86 43-131 335-423 (425)
72 COG0438 RfaG Glycosyltransfera 99.3 4.3E-11 9.4E-16 82.3 10.6 87 44-130 292-379 (381)
73 PLN02275 transferase, transfer 99.3 1.2E-11 2.5E-16 88.3 7.5 85 3-91 263-371 (371)
74 PLN03063 alpha,alpha-trehalose 99.2 2.8E-10 6.1E-15 87.9 11.5 98 30-130 377-480 (797)
75 TIGR03713 acc_sec_asp1 accesso 99.2 3.1E-10 6.7E-15 84.0 11.1 77 44-125 443-519 (519)
76 PRK00726 murG undecaprenyldiph 99.2 2.6E-10 5.7E-15 80.7 8.9 82 44-126 264-356 (357)
77 TIGR01133 murG undecaprenyldip 99.1 1.8E-10 3.9E-15 81.1 7.0 101 17-118 222-345 (348)
78 PLN02605 monogalactosyldiacylg 99.1 7.4E-10 1.6E-14 79.3 9.6 78 44-124 294-378 (382)
79 PRK13608 diacylglycerol glucos 99.1 2.3E-09 4.9E-14 77.1 10.8 85 44-130 285-374 (391)
80 PRK13609 diacylglycerol glucos 99.1 2.2E-09 4.7E-14 76.8 10.1 110 15-128 243-372 (380)
81 PRK14501 putative bifunctional 99.0 2.9E-09 6.3E-14 81.9 10.8 87 39-130 372-465 (726)
82 cd03785 GT1_MurG MurG is an N- 99.0 1.4E-09 3.1E-14 76.6 7.5 99 17-118 224-348 (350)
83 COG0297 GlgA Glycogen synthase 98.9 1.9E-08 4.1E-13 73.8 11.3 85 44-131 384-481 (487)
84 KOG1387 Glycosyltransferase [C 98.9 7.2E-08 1.6E-12 67.3 12.3 128 2-131 306-462 (465)
85 cd04950 GT1_like_1 Glycosyltra 98.9 1.8E-08 3.9E-13 72.0 9.7 77 44-127 294-371 (373)
86 PRK09814 beta-1,6-galactofuran 98.9 5.3E-09 1.2E-13 73.7 6.9 72 45-120 253-324 (333)
87 TIGR00236 wecB UDP-N-acetylglu 98.6 6.2E-08 1.3E-12 69.0 4.4 77 45-123 286-363 (365)
88 PRK00025 lpxB lipid-A-disaccha 98.6 7.1E-07 1.5E-11 63.8 9.5 84 44-129 272-375 (380)
89 KOG2941 Beta-1,4-mannosyltrans 98.6 1.1E-06 2.3E-11 61.6 9.5 74 45-121 358-435 (444)
90 PLN03064 alpha,alpha-trehalose 98.5 2E-06 4.2E-11 67.7 10.7 97 30-129 461-563 (934)
91 PF13692 Glyco_trans_1_4: Glyc 98.5 1.9E-07 4E-12 57.2 3.5 64 29-93 71-135 (135)
92 PF05693 Glycogen_syn: Glycoge 98.3 1.2E-06 2.6E-11 65.4 5.5 101 30-131 471-585 (633)
93 TIGR02398 gluc_glyc_Psyn gluco 98.3 3.1E-05 6.8E-10 57.3 12.7 79 44-126 397-481 (487)
94 cd01635 Glycosyltransferase_GT 98.3 9.4E-07 2E-11 57.9 3.7 47 30-76 183-229 (229)
95 COG4641 Uncharacterized protei 98.2 7.4E-06 1.6E-10 57.9 7.0 84 45-129 280-363 (373)
96 TIGR02919 accessory Sec system 98.2 1.6E-05 3.5E-10 58.2 8.9 86 17-108 319-426 (438)
97 cd03786 GT1_UDP-GlcNAc_2-Epime 98.1 9.1E-06 2E-10 57.7 6.4 83 17-100 244-344 (363)
98 TIGR02094 more_P_ylases alpha- 98.1 0.00012 2.6E-09 55.6 11.3 77 48-125 499-598 (601)
99 PF13844 Glyco_transf_41: Glyc 97.7 0.00039 8.4E-09 51.3 9.0 115 14-129 325-468 (468)
100 PF00982 Glyco_transf_20: Glyc 97.3 0.0075 1.6E-07 44.9 11.4 82 42-126 386-473 (474)
101 COG1519 KdtA 3-deoxy-D-manno-o 97.3 0.0025 5.4E-08 46.2 8.1 66 44-110 334-403 (419)
102 PRK10117 trehalose-6-phosphate 97.2 0.025 5.4E-07 42.1 12.7 82 44-129 367-455 (474)
103 cd04299 GT1_Glycogen_Phosphory 96.9 0.019 4.1E-07 45.2 10.2 77 48-125 588-687 (778)
104 TIGR01426 MGT glycosyltransfer 96.9 0.0038 8.3E-08 45.0 6.0 80 44-124 303-389 (392)
105 TIGR00215 lpxB lipid-A-disacch 96.5 0.032 6.9E-07 40.5 8.8 68 45-113 279-370 (385)
106 TIGR03492 conserved hypothetic 96.5 0.0091 2E-07 43.5 5.8 76 44-119 307-390 (396)
107 PLN02205 alpha,alpha-trehalose 96.5 0.065 1.4E-06 42.9 10.7 71 54-128 480-552 (854)
108 COG0381 WecB UDP-N-acetylgluco 96.2 0.087 1.9E-06 38.1 9.0 77 45-127 293-370 (383)
109 PHA03392 egt ecdysteroid UDP-g 96.2 0.032 6.9E-07 42.0 7.2 61 44-104 376-443 (507)
110 COG1819 Glycosyl transferases, 96.0 0.035 7.6E-07 40.6 6.8 82 44-126 312-400 (406)
111 COG0707 MurG UDP-N-acetylgluco 95.9 0.037 8.1E-07 39.8 6.3 65 44-108 264-339 (357)
112 COG0380 OtsA Trehalose-6-phosp 95.8 0.23 5E-06 37.2 10.2 72 52-127 406-479 (486)
113 PLN02670 transferase, transfer 95.5 0.077 1.7E-06 39.7 7.0 83 44-127 369-465 (472)
114 TIGR03568 NeuC_NnaA UDP-N-acet 95.5 0.031 6.7E-07 40.3 4.7 71 46-124 294-364 (365)
115 PF00201 UDPGT: UDP-glucoronos 95.3 0.0087 1.9E-07 44.6 1.4 56 44-99 353-415 (500)
116 smart00672 CAP10 Putative lipo 95.2 0.28 6.1E-06 33.7 8.4 80 48-127 164-248 (256)
117 COG3914 Spy Predicted O-linked 95.2 0.12 2.6E-06 39.2 6.8 125 5-132 463-618 (620)
118 PLN02410 UDP-glucoronosyl/UDP- 95.2 0.084 1.8E-06 39.2 6.1 62 44-106 354-422 (451)
119 PLN02208 glycosyltransferase f 94.8 0.095 2.1E-06 38.8 5.6 63 44-106 341-415 (442)
120 PF05686 Glyco_transf_90: Glyc 94.8 0.23 5.1E-06 36.3 7.5 79 48-126 233-316 (395)
121 PLN02992 coniferyl-alcohol glu 94.6 0.18 3.9E-06 37.8 6.7 51 44-94 368-428 (481)
122 cd03784 GT1_Gtf_like This fami 94.4 0.12 2.6E-06 37.4 5.3 51 44-94 316-373 (401)
123 PLN02210 UDP-glucosyl transfer 94.3 0.21 4.6E-06 37.2 6.5 51 44-94 354-416 (456)
124 PLN02562 UDP-glycosyltransfera 94.0 0.29 6.2E-06 36.4 6.6 56 44-99 358-419 (448)
125 PF02350 Epimerase_2: UDP-N-ac 93.8 0.16 3.5E-06 36.4 4.8 73 47-125 272-345 (346)
126 PLN03004 UDP-glycosyltransfera 93.7 0.2 4.4E-06 37.3 5.3 53 44-96 364-427 (451)
127 KOG3742 Glycogen synthase [Car 93.3 0.19 4.1E-06 37.3 4.5 94 32-126 504-611 (692)
128 PLN00414 glycosyltransferase f 93.3 0.5 1.1E-05 35.2 6.8 64 44-107 342-417 (446)
129 PLN02448 UDP-glycosyltransfera 93.2 0.42 9.2E-06 35.6 6.4 63 44-106 353-429 (459)
130 PLN02554 UDP-glycosyltransfera 93.2 0.63 1.4E-05 34.9 7.3 52 44-95 372-443 (481)
131 PLN03007 UDP-glucosyltransfera 93.0 0.81 1.8E-05 34.4 7.6 51 44-94 375-441 (482)
132 PLN02152 indole-3-acetate beta 92.7 0.51 1.1E-05 35.3 6.2 51 44-94 357-418 (455)
133 PLN02167 UDP-glycosyltransfera 92.6 1.1 2.3E-05 33.7 7.8 51 44-94 370-435 (475)
134 PLN02764 glycosyltransferase f 92.4 0.83 1.8E-05 34.1 6.9 85 44-128 347-446 (453)
135 PLN00164 glucosyltransferase; 91.7 1.2 2.6E-05 33.6 7.1 63 44-106 369-445 (480)
136 PF15024 Glyco_transf_18: Glyc 91.7 1.1 2.4E-05 34.2 6.9 76 42-127 354-455 (559)
137 PRK12446 undecaprenyldiphospho 91.6 0.52 1.1E-05 33.9 5.0 54 45-98 265-330 (352)
138 PF04101 Glyco_tran_28_C: Glyc 91.4 0.017 3.6E-07 36.7 -2.4 60 44-103 84-154 (167)
139 PLN02173 UDP-glucosyl transfer 91.1 1.1 2.3E-05 33.5 6.3 62 44-106 347-420 (449)
140 PLN02207 UDP-glycosyltransfera 90.9 1.6 3.5E-05 32.8 7.1 49 44-92 362-425 (468)
141 PLN02555 limonoid glucosyltran 90.8 1.2 2.6E-05 33.6 6.4 63 44-107 367-442 (480)
142 PLN02863 UDP-glucoronosyl/UDP- 89.7 3.9 8.4E-05 30.9 8.2 49 44-92 373-432 (477)
143 PLN03015 UDP-glucosyl transfer 85.5 3.9 8.5E-05 30.8 6.1 49 44-92 365-425 (470)
144 PRK02797 4-alpha-L-fucosyltran 85.2 4.8 0.0001 28.7 6.1 71 48-131 246-320 (322)
145 KOG4626 O-linked N-acetylgluco 83.3 6.4 0.00014 31.0 6.4 121 11-133 796-946 (966)
146 PRK10017 colanic acid biosynth 83.0 8.5 0.00018 28.7 6.9 50 48-99 342-398 (426)
147 COG0058 GlgP Glucan phosphoryl 82.3 21 0.00046 28.7 9.0 33 48-80 598-632 (750)
148 PF04464 Glyphos_transf: CDP-G 82.0 3.4 7.3E-05 29.7 4.5 52 44-97 280-340 (369)
149 PF13528 Glyco_trans_1_3: Glyc 81.2 1.2 2.6E-05 31.0 2.0 46 44-89 262-316 (318)
150 TIGR00661 MJ1255 conserved hyp 78.8 1.9 4E-05 30.5 2.3 48 44-92 259-313 (321)
151 PLN02534 UDP-glycosyltransfera 77.5 21 0.00046 27.2 7.6 49 44-92 374-443 (491)
152 COG0803 LraI ABC-type metal io 77.2 14 0.0003 26.1 6.2 83 27-109 80-173 (303)
153 COG4370 Uncharacterized protei 76.6 15 0.00032 26.5 6.0 63 48-110 326-396 (412)
154 COG0763 LpxB Lipid A disacchar 75.6 19 0.00042 26.4 6.6 60 44-105 275-356 (381)
155 PF00852 Glyco_transf_10: Glyc 75.5 3.8 8.1E-05 29.6 3.1 51 48-99 250-304 (349)
156 cd01020 TroA_b Metal binding p 75.2 18 0.00039 24.9 6.3 98 24-126 48-149 (264)
157 KOG1192 UDP-glucuronosyl and U 75.0 16 0.00035 27.3 6.5 56 44-99 366-428 (496)
158 COG1911 RPL30 Ribosomal protei 70.8 18 0.0004 21.0 4.7 39 2-41 36-74 (100)
159 PF02684 LpxB: Lipid-A-disacch 70.1 41 0.00088 24.7 9.2 57 44-100 271-347 (373)
160 KOG1021 Acetylglucosaminyltran 69.2 39 0.00084 25.6 7.3 70 44-115 359-433 (464)
161 PLN02929 NADH kinase 67.8 21 0.00046 25.4 5.3 45 49-93 84-137 (301)
162 PF03016 Exostosin: Exostosin 66.4 14 0.0003 25.6 4.3 59 29-87 237-299 (302)
163 PF04007 DUF354: Protein of un 65.9 32 0.00069 24.9 6.0 45 45-91 260-308 (335)
164 PF13407 Peripla_BP_4: Peripla 62.2 44 0.00096 22.3 6.1 54 8-61 36-89 (257)
165 PRK14986 glycogen phosphorylas 62.0 20 0.00043 29.2 4.7 39 48-86 663-703 (815)
166 cd07347 harmonin_N_like N-term 60.8 28 0.0006 19.5 5.2 46 79-126 4-49 (78)
167 TIGR03590 PseG pseudaminic aci 60.0 21 0.00045 24.8 4.2 18 44-61 252-269 (279)
168 PRK09545 znuA high-affinity zi 58.6 53 0.0012 23.3 6.1 50 74-126 147-199 (311)
169 PRK06843 inosine 5-monophospha 54.8 40 0.00087 25.1 5.0 67 26-92 10-89 (404)
170 KOG2619 Fucosyltransferase [Ca 54.7 42 0.0009 24.7 5.0 50 48-99 273-325 (372)
171 TIGR02093 P_ylase glycogen/sta 53.0 26 0.00056 28.5 4.0 78 48-131 647-734 (794)
172 cd01018 ZntC Metal binding pro 52.4 65 0.0014 22.2 5.6 36 74-109 114-152 (266)
173 cd01409 SIRT4 SIRT4: Eukaryoti 52.2 72 0.0016 22.1 5.8 57 2-61 181-240 (260)
174 PRK14985 maltodextrin phosphor 51.9 30 0.00064 28.2 4.2 39 48-86 649-689 (798)
175 KOG0780 Signal recognition par 51.7 1E+02 0.0022 23.2 9.0 120 2-126 184-341 (483)
176 PRK04885 ppnK inorganic polyph 50.5 82 0.0018 21.9 5.8 70 15-93 16-93 (265)
177 PF13169 Poxvirus_B22R_N: Poxv 50.5 48 0.001 19.1 5.1 23 106-128 44-66 (92)
178 COG4566 TtrR Response regulato 49.9 22 0.00049 23.6 2.8 46 48-93 72-122 (202)
179 cd01016 TroA Metal binding pro 49.8 83 0.0018 21.9 5.8 83 27-109 49-141 (276)
180 PTZ00106 60S ribosomal protein 49.5 52 0.0011 19.5 4.1 47 2-55 42-88 (108)
181 PF07368 DUF1487: Protein of u 49.1 67 0.0015 21.7 5.0 40 47-88 91-133 (215)
182 KOG2458 Endoplasmic reticulum 49.0 98 0.0021 23.8 6.2 48 79-126 395-442 (528)
183 PHA02516 W baseplate wedge sub 48.8 23 0.0005 20.7 2.6 56 71-128 4-63 (103)
184 PF01297 TroA: Periplasmic sol 47.2 22 0.00049 24.2 2.7 81 28-109 47-132 (256)
185 COG4671 Predicted glycosyl tra 46.9 94 0.002 23.0 5.7 87 4-93 254-365 (400)
186 PF00072 Response_reg: Respons 46.3 45 0.00097 18.8 3.6 38 51-88 70-112 (112)
187 COG2327 WcaK Polysaccharide py 45.8 68 0.0015 23.8 5.0 44 48-93 300-350 (385)
188 KOG2456 Aldehyde dehydrogenase 45.1 58 0.0013 24.4 4.5 83 2-93 247-359 (477)
189 PRK00771 signal recognition pa 44.9 1.3E+02 0.0029 22.7 7.5 76 46-125 253-333 (437)
190 PF03401 TctC: Tripartite tric 44.9 55 0.0012 22.7 4.3 37 68-104 202-243 (274)
191 PF12738 PTCB-BRCT: twin BRCT 44.8 3.6 7.7E-05 21.4 -1.2 54 5-59 2-62 (63)
192 PF13263 PHP_C: PHP-associated 43.5 5.5 0.00012 20.4 -0.6 40 48-88 11-52 (56)
193 PHA00451 protein kinase 43.3 47 0.001 23.5 3.7 38 51-92 205-242 (362)
194 PRK06683 hypothetical protein; 42.4 62 0.0014 18.1 4.4 48 2-58 28-76 (82)
195 COG1105 FruK Fructose-1-phosph 42.2 96 0.0021 22.3 5.2 85 9-95 109-201 (310)
196 PF05159 Capsule_synth: Capsul 42.0 15 0.00033 25.2 1.2 18 44-61 210-227 (269)
197 PF15586 Imm47: Immunity prote 41.3 45 0.00098 20.1 3.0 22 71-92 68-90 (116)
198 COG0646 MetH Methionine syntha 41.3 1.3E+02 0.0029 21.5 7.1 42 48-92 243-284 (311)
199 PRK03372 ppnK inorganic polyph 41.1 52 0.0011 23.5 3.8 37 49-94 93-129 (306)
200 PF07429 Glyco_transf_56: 4-al 40.0 86 0.0019 23.0 4.7 68 48-128 285-356 (360)
201 PF01884 PcrB: PcrB family; I 39.7 46 0.00099 22.7 3.2 36 2-37 33-68 (230)
202 PF08766 DEK_C: DEK C terminal 39.5 39 0.00085 17.1 2.3 35 81-115 3-37 (54)
203 PF09337 zf-H2C2: His(2)-Cys(2 38.3 48 0.001 15.7 2.3 25 104-128 11-35 (39)
204 TIGR00959 ffh signal recogniti 38.3 1.7E+02 0.0038 22.0 8.4 74 48-125 262-340 (428)
205 PRK01911 ppnK inorganic polyph 38.2 48 0.001 23.4 3.2 36 50-94 86-121 (292)
206 COG1817 Uncharacterized protei 37.8 44 0.00096 24.1 2.9 49 44-94 263-315 (346)
207 COG4531 ZnuA ABC-type Zn2+ tra 37.8 1.5E+02 0.0032 21.1 6.8 84 24-108 71-190 (318)
208 PRK04539 ppnK inorganic polyph 37.5 75 0.0016 22.5 4.1 35 50-93 90-124 (296)
209 PRK02649 ppnK inorganic polyph 37.4 50 0.0011 23.6 3.2 38 48-94 88-125 (305)
210 PF03568 Peptidase_C50: Peptid 37.0 47 0.001 24.4 3.1 17 44-60 359-375 (383)
211 PTZ00409 Sir2 (Silent Informat 36.9 1.5E+02 0.0032 20.8 5.8 79 2-85 176-257 (271)
212 PRK02155 ppnK NAD(+)/NADH kina 36.8 65 0.0014 22.8 3.7 35 50-93 85-119 (291)
213 cd01539 PBP1_GGBP Periplasmic 36.8 1.4E+02 0.0031 20.6 7.3 16 46-61 76-91 (303)
214 PF10911 DUF2717: Protein of u 36.4 57 0.0012 18.1 2.6 8 93-100 31-38 (77)
215 PRK14075 pnk inorganic polypho 36.4 1.4E+02 0.0031 20.6 6.2 33 52-93 62-94 (256)
216 PF08757 CotH: CotH protein; 36.1 1.5E+02 0.0032 20.7 5.9 43 86-128 243-285 (323)
217 PRK14089 ipid-A-disaccharide s 35.7 79 0.0017 23.0 4.1 15 44-58 246-260 (347)
218 COG3660 Predicted nucleoside-d 35.3 1.2E+02 0.0026 21.6 4.6 15 44-58 257-271 (329)
219 PRK01231 ppnK inorganic polyph 35.0 58 0.0012 23.1 3.2 34 51-93 85-118 (295)
220 cd01410 SIRT7 SIRT7: Eukaryoti 34.3 1.4E+02 0.0031 19.8 5.3 57 2-61 132-191 (206)
221 PRK03501 ppnK inorganic polyph 34.2 1.6E+02 0.0035 20.5 5.7 35 52-94 64-98 (264)
222 TIGR00715 precor6x_red precorr 34.2 1.6E+02 0.0035 20.4 6.2 79 3-91 176-255 (256)
223 cd01137 PsaA Metal binding pro 34.0 1.4E+02 0.003 20.9 5.0 50 74-126 119-171 (287)
224 cd06311 PBP1_ABC_sugar_binding 33.6 1.3E+02 0.0028 20.2 4.8 44 17-61 50-94 (274)
225 PTZ00314 inosine-5'-monophosph 33.6 75 0.0016 24.4 3.8 74 19-92 10-97 (495)
226 PRK14142 heat shock protein Gr 33.3 1.6E+02 0.0034 20.1 5.4 48 80-128 49-96 (223)
227 PRK10867 signal recognition pa 33.3 2.1E+02 0.0046 21.6 8.0 74 48-125 263-341 (433)
228 KOG4540 Putative lipase essent 32.9 58 0.0012 23.4 2.9 43 18-60 264-306 (425)
229 COG5153 CVT17 Putative lipase 32.9 58 0.0012 23.4 2.9 43 18-60 264-306 (425)
230 cd01017 AdcA Metal binding pro 32.8 1.4E+02 0.0031 20.7 4.9 50 74-126 115-167 (282)
231 COG3628 Phage baseplate assemb 32.6 79 0.0017 19.1 3.0 58 70-128 10-71 (116)
232 PF00919 UPF0004: Uncharacteri 32.5 1E+02 0.0023 17.8 3.7 36 2-37 37-77 (98)
233 COG3456 Predicted component of 32.4 1.3E+02 0.0029 22.6 4.7 53 67-122 320-373 (430)
234 PF00478 IMPDH: IMP dehydrogen 32.3 84 0.0018 23.0 3.7 65 26-90 3-82 (352)
235 PRK14717 putative glycine/sarc 32.0 1E+02 0.0022 18.1 3.3 46 17-62 7-53 (107)
236 PLN02274 inosine-5'-monophosph 31.4 1.1E+02 0.0025 23.5 4.5 76 17-92 13-101 (505)
237 PF11071 DUF2872: Protein of u 31.3 35 0.00075 21.2 1.4 12 48-59 96-107 (141)
238 PF05524 PEP-utilisers_N: PEP- 30.3 1.2E+02 0.0027 17.9 5.3 46 82-127 68-113 (123)
239 PF04312 DUF460: Protein of un 29.9 23 0.0005 22.1 0.5 22 48-69 72-94 (138)
240 COG1609 PurR Transcriptional r 29.9 2.1E+02 0.0046 20.5 7.4 40 48-92 133-172 (333)
241 KOG0180 20S proteasome, regula 29.7 48 0.001 21.6 1.9 21 79-99 158-178 (204)
242 TIGR01769 GGGP geranylgeranylg 29.4 1.4E+02 0.0029 20.1 4.1 36 2-37 25-62 (205)
243 cd01413 SIR2_Af2 SIR2_Af2: Arc 29.3 1.8E+02 0.0039 19.5 5.6 57 2-61 148-207 (222)
244 PF02376 CUT: CUT domain; Int 29.1 19 0.00041 20.5 0.0 28 90-117 47-74 (87)
245 cd01019 ZnuA Zinc binding prot 28.0 2.1E+02 0.0046 20.0 6.2 36 74-109 123-161 (286)
246 PRK12362 germination protease; 27.6 69 0.0015 23.0 2.6 14 48-61 216-229 (318)
247 cd04300 GT1_Glycogen_Phosphory 27.2 51 0.0011 26.9 2.1 39 48-86 650-690 (797)
248 cd01145 TroA_c Periplasmic bin 27.1 1.7E+02 0.0037 19.2 4.3 50 74-126 110-162 (203)
249 TIGR03239 GarL 2-dehydro-3-deo 26.8 1.9E+02 0.0042 19.9 4.6 45 48-92 58-108 (249)
250 TIGR01501 MthylAspMutase methy 26.3 1.7E+02 0.0036 18.2 3.9 13 79-91 120-132 (134)
251 PF06258 Mito_fiss_Elm1: Mitoc 25.9 2.3E+02 0.005 20.3 5.0 19 44-62 241-259 (311)
252 KOG2550 IMP dehydrogenase/GMP 25.8 1.6E+02 0.0035 22.3 4.2 74 17-90 21-107 (503)
253 PRK05567 inosine 5'-monophosph 25.5 1.7E+02 0.0036 22.4 4.5 66 26-91 9-87 (486)
254 PRK02231 ppnK inorganic polyph 25.3 1.1E+02 0.0023 21.5 3.2 54 30-92 44-97 (272)
255 TIGR02634 xylF D-xylose ABC tr 25.1 1.9E+02 0.0041 20.1 4.5 16 46-61 73-88 (302)
256 PF10087 DUF2325: Uncharacteri 24.6 1.5E+02 0.0031 16.9 4.6 17 48-64 71-87 (97)
257 PF09016 Pas_Saposin: Pas fact 24.6 1.3E+02 0.0029 16.4 5.0 45 83-129 5-50 (76)
258 cd06317 PBP1_ABC_sugar_binding 24.6 2.2E+02 0.0048 18.9 5.1 16 46-61 75-90 (275)
259 COG1618 Predicted nucleotide k 24.4 1.6E+02 0.0034 19.3 3.5 46 47-92 125-176 (179)
260 PRK14077 pnk inorganic polypho 24.3 1.2E+02 0.0026 21.4 3.3 36 49-93 85-120 (287)
261 PRK10128 2-keto-3-deoxy-L-rham 23.8 2.6E+02 0.0055 19.6 4.8 45 48-92 64-114 (267)
262 PF10649 DUF2478: Protein of u 23.6 52 0.0011 21.1 1.3 13 46-58 117-129 (159)
263 PRK10558 alpha-dehydro-beta-de 23.4 2.2E+02 0.0048 19.7 4.4 45 48-92 65-115 (256)
264 PRK14164 heat shock protein Gr 23.3 2.5E+02 0.0054 19.1 5.7 45 83-128 89-133 (218)
265 PF14053 DUF4248: Domain of un 23.2 97 0.0021 16.8 2.1 40 79-118 20-60 (69)
266 COG2433 Uncharacterized conser 23.1 1E+02 0.0022 24.4 2.9 56 48-103 284-350 (652)
267 PF05591 DUF770: Protein of un 23.0 2E+02 0.0043 18.4 3.8 11 79-89 100-110 (157)
268 PRK05333 NAD-dependent deacety 22.9 2.8E+02 0.006 19.5 8.7 82 2-89 191-275 (285)
269 PF00532 Peripla_BP_1: Peripla 21.9 2.8E+02 0.0061 19.1 6.5 82 4-92 34-115 (279)
270 cd06309 PBP1_YtfQ_like Peripla 21.8 2.6E+02 0.0056 18.7 4.9 56 5-61 33-89 (273)
271 PRK03378 ppnK inorganic polyph 21.8 1.2E+02 0.0027 21.4 3.0 34 51-93 86-119 (292)
272 COG3181 Uncharacterized protei 21.8 3.2E+02 0.007 19.8 6.0 55 69-125 246-305 (319)
273 PRK04169 geranylgeranylglycery 21.6 2E+02 0.0043 19.7 3.8 35 2-37 33-69 (232)
274 COG2197 CitB Response regulato 21.3 2.6E+02 0.0056 18.5 5.7 30 63-92 89-119 (211)
275 PF11238 DUF3039: Protein of u 21.3 59 0.0013 17.0 1.0 14 45-58 17-30 (58)
276 PF13907 DUF4208: Domain of un 21.2 1.8E+02 0.004 16.8 4.2 31 96-128 70-100 (100)
277 PF08769 Spo0A_C: Sporulation 21.1 94 0.002 18.3 2.0 50 81-130 19-70 (106)
278 TIGR01302 IMP_dehydrog inosine 21.1 2.3E+02 0.0051 21.4 4.5 66 27-92 3-81 (450)
279 TIGR01768 GGGP-family geranylg 21.1 2.2E+02 0.0047 19.4 3.9 35 2-37 28-64 (223)
280 PRK14155 heat shock protein Gr 21.0 2.7E+02 0.006 18.7 5.6 44 84-128 33-76 (208)
281 COG1879 RbsB ABC-type sugar tr 21.0 2.4E+02 0.0051 19.7 4.4 48 15-64 80-128 (322)
282 PF12697 Abhydrolase_6: Alpha/ 20.9 1.6E+02 0.0035 18.4 3.3 19 45-63 17-35 (228)
283 PF10933 DUF2827: Protein of u 20.8 1.7E+02 0.0037 21.6 3.5 64 45-116 287-352 (364)
284 COG4565 CitB Response regulato 20.6 2.7E+02 0.0058 19.1 4.2 34 59-92 85-119 (224)
285 COG1139 Uncharacterized conser 20.3 1.5E+02 0.0032 22.6 3.2 62 52-113 127-194 (459)
No 1
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.87 E-value=3.9e-21 Score=138.05 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=104.9
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------------CchhhhhcCCCE
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------------KPHSSMAAYKPV 55 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------------~~~eAma~G~pv 55 (134)
.+++++.+- ..+++.+.+.++++++.|.|+|. ..|.|. .+.|||+||+||
T Consensus 255 ~l~ivG~G~---~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 255 RYRILGIGP---WERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred EEEEEECch---hHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 456666542 34568888888999999999985 122222 356899999999
Q ss_pred EeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 56 IACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 56 i~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
|+|+.++.+|++.++.+|+++++ |+++++++|.+++. |++.+.+|++++++++.++|+|+.+.+++.++|++
T Consensus 332 I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 332 VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999999998 99999999999999 99999999999999999999999999999999976
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.86 E-value=1.2e-20 Score=133.75 Aligned_cols=124 Identities=20% Similarity=0.295 Sum_probs=105.3
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------ccccC----------CchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQFD----------KPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~----------~~~eAma~G~pvi~s~~~~~ 63 (134)
.++++|.+.. ..++.+.+.++++.+.+.|+|.. .|.+. ...|||+||+|||+|+.++.
T Consensus 231 ~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~ 307 (374)
T TIGR03088 231 RLVIVGDGPA---RGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGN 307 (374)
T ss_pred EEEEecCCch---HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCc
Confidence 4677775432 34577788888888889998851 22222 46679999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 129 (134)
.|++.++.+|++++. |++++++++..++.++..+..+++++++.+.++|||+.+.+++.++|++++
T Consensus 308 ~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 308 PELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred HHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 999999989999988 899999999999999999999999999999899999999999999998763
No 3
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.83 E-value=1.3e-19 Score=132.47 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=106.6
Q ss_pred ceEeecCcc-chhhHHHHHHHHHHcCCCCeEEeccc--------cccccC----------CchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKF-TATTFANTFKKLHARGIHPVVLYPAV--------NVYQFD----------KPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~v~~~g~--------~~~~~~----------~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++... ...+.+++.+.++++++.+.|.|.|. ..+.+. .++|||+||+|||+|+.++.
T Consensus 326 ~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~ 405 (475)
T cd03813 326 EGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSC 405 (475)
T ss_pred EEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCCh
Confidence 467777653 34566788899999999999999994 122222 46689999999999999999
Q ss_pred ccceee------CceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 64 VETIKN------EVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 64 ~e~i~~------~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
.+++.+ +.+|+++++ |+++++++|.+++.|+..+..|++++++++.+.|+|+.+.++|.++|+
T Consensus 406 ~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 406 RELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999988 568999988 999999999999999999999999999999999999999999999984
No 4
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.82 E-value=3.8e-19 Score=134.57 Aligned_cols=124 Identities=19% Similarity=0.371 Sum_probs=103.9
Q ss_pred cceEeecCccc---------hhhHHHHHHHHHHcCCCCeEEecccc-------------c---cccC----------Cch
Q 043097 2 ADVILVNSKFT---------ATTFANTFKKLHARGIHPVVLYPAVN-------------V---YQFD----------KPH 46 (134)
Q Consensus 2 a~~v~~~s~~~---------~~~~~~~~~~~~~~~~~~~v~~~g~~-------------~---~~~~----------~~~ 46 (134)
+.++++++... ....+++.+.+.++++.+.|.|+|.. . +.|. +++
T Consensus 582 ~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvL 661 (784)
T TIGR02470 582 VNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVL 661 (784)
T ss_pred eEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHH
Confidence 46788886542 12446778888899999999998841 1 2333 355
Q ss_pred hhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 47 SSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLI----QEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 47 eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
|||+||+|||+|+.||+.|++.++.+|+++++ |+++++++|.+++ .|+..+.+|++++++++.++|||+.+++++
T Consensus 662 EAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~l 741 (784)
T TIGR02470 662 EAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERL 741 (784)
T ss_pred HHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 79999999999999999999999999999998 9999999999876 699999999999999999999999999999
Q ss_pred HHHH
Q 043097 122 NRLL 125 (134)
Q Consensus 122 ~~~~ 125 (134)
.++.
T Consensus 742 l~l~ 745 (784)
T TIGR02470 742 LTLA 745 (784)
T ss_pred HHHH
Confidence 8775
No 5
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.81 E-value=8.9e-19 Score=125.45 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=105.3
Q ss_pred ceEeecCccc-h-hhHHHHHHHHHHcCCCCeEEeccc-----------ccccc----------CCchhhhhcCCCEEecc
Q 043097 3 DVILVNSKFT-A-TTFANTFKKLHARGIHPVVLYPAV-----------NVYQF----------DKPHSSMAAYKPVIACD 59 (134)
Q Consensus 3 ~~v~~~s~~~-~-~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~----------~~~~eAma~G~pvi~s~ 59 (134)
.+++++.... . ...+++.+.+..+++.+.|.|+|. ..+.+ ..++|||++|+|||+++
T Consensus 254 ~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~ 333 (405)
T TIGR03449 254 RVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAAR 333 (405)
T ss_pred EEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEec
Confidence 3566664221 2 345667888888899888999885 12222 25678999999999999
Q ss_pred CCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 60 SGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 60 ~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
.++..|++.++.+|+++++ |+++++++|.+++.++..+.+|++++++.+ ++|||+.+++++.++|.+++.
T Consensus 334 ~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 334 VGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred CCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988 999999999999999999999999999877 689999999999999998763
No 6
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.81 E-value=9.2e-19 Score=123.61 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=102.3
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------ccc----------cCCchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQ----------FDKPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~----------~~~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++.+... ..+.+.+.++++.+.+.|.|.. .+. ..+..|||++|+|||+|+.++.
T Consensus 229 ~l~i~G~g~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~ 305 (371)
T cd04962 229 RLLLVGDGPER---SPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGI 305 (371)
T ss_pred eEEEEcCCcCH---HHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCc
Confidence 46677655332 3466667777777778888752 122 2256789999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.|++.++.+|+++++ |++++++++.++++++..+..|++++++.+.++|+|+.+.+++.++|+++
T Consensus 306 ~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 306 PEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred hhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999889999988 89999999999999999999999999999889999999999999999864
No 7
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.81 E-value=1.2e-18 Score=125.29 Aligned_cols=117 Identities=24% Similarity=0.422 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHcCC-CCeEEeccc--------------------cccccC-CchhhhhcCCCEEeccCCCcccceeeC
Q 043097 13 ATTFANTFKKLHARGI-HPVVLYPAV--------------------NVYQFD-KPHSSMAAYKPVIACDSGGPVETIKNE 70 (134)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~v~~~g~--------------------~~~~~~-~~~eAma~G~pvi~s~~~~~~e~i~~~ 70 (134)
-.++.++.+++.++++ .+.++|... ..+.|. .|+|||+||+|||+|+.||+.|++.++
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~ 407 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHG 407 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcC
Confidence 3456788899999988 577777432 123344 899999999999999999999999999
Q ss_pred ceEEEecCCHH---HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 043097 71 VVGFLCNPTPQ---EFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 71 ~~g~~~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 129 (134)
.+|++++++.+ .+++++.++..||+.+.+|++++++++.+.|+|.++.+++..+.....
T Consensus 408 ~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 408 VTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred CcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 99999998655 699999999999999999999999999999999999999988887543
No 8
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.81 E-value=6.7e-19 Score=127.63 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCeEEeccc-----------cc----cccC----------CchhhhhcCCCEEeccCCCcccceeeCc
Q 043097 17 ANTFKKLHARGIHPVVLYPAV-----------NV----YQFD----------KPHSSMAAYKPVIACDSGGPVETIKNEV 71 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~-----------~~----~~~~----------~~~eAma~G~pvi~s~~~~~~e~i~~~~ 71 (134)
+++...+.+.++...|.|+|. .. |.|. .++|||+||+|||+|+.++..|++.++.
T Consensus 304 ~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~ 383 (439)
T TIGR02472 304 QKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCR 383 (439)
T ss_pred HHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCC
Confidence 345566777788888888773 11 4443 4557999999999999999999999999
Q ss_pred eEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 72 VGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 72 ~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
+|+++++ |+++++++|.++++++..+.+|++++++++.++|||+.+++++.++++
T Consensus 384 ~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 384 NGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred cEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999988 999999999999999999999999999999999999999999988763
No 9
>PLN00142 sucrose synthase
Probab=99.81 E-value=8.6e-19 Score=132.84 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=100.6
Q ss_pred cceEeecCccch---------hhHHHHHHHHHHcCCCCeEEecccc----------------ccccC----------Cch
Q 043097 2 ADVILVNSKFTA---------TTFANTFKKLHARGIHPVVLYPAVN----------------VYQFD----------KPH 46 (134)
Q Consensus 2 a~~v~~~s~~~~---------~~~~~~~~~~~~~~~~~~v~~~g~~----------------~~~~~----------~~~ 46 (134)
+.++++++.... ....++.+.+.++++.+.|.|.|.. .+.|. +++
T Consensus 605 ~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvL 684 (815)
T PLN00142 605 VNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVV 684 (815)
T ss_pred cEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHH
Confidence 467888765210 1234577788888998888887630 12333 456
Q ss_pred hhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 47 SSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKL----IQEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 47 eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
|||+||+|||+|+.||+.|++.++.+|+++++ |+++++++|..+ +.|+..+.+|++++++++.++|||+.+++++
T Consensus 685 EAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rl 764 (815)
T PLN00142 685 EAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERL 764 (815)
T ss_pred HHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 79999999999999999999999999999998 999999998765 4699999999999999999999999999999
Q ss_pred HHHH
Q 043097 122 NRLL 125 (134)
Q Consensus 122 ~~~~ 125 (134)
.++.
T Consensus 765 l~L~ 768 (815)
T PLN00142 765 LTLG 768 (815)
T ss_pred HHHH
Confidence 8765
No 10
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.81 E-value=8e-19 Score=135.50 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCCCCeEEeccc-----------cc----cccC----------CchhhhhcCCCEEeccCCCcccceee
Q 043097 15 TFANTFKKLHARGIHPVVLYPAV-----------NV----YQFD----------KPHSSMAAYKPVIACDSGGPVETIKN 69 (134)
Q Consensus 15 ~~~~~~~~~~~~~~~~~v~~~g~-----------~~----~~~~----------~~~eAma~G~pvi~s~~~~~~e~i~~ 69 (134)
...++.+.+.++++.+.|.|+|. .. +.|. .++|||+||+|||+|+.||+.|++.+
T Consensus 533 ~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 533 VLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred HHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 45678889999999999999985 11 3443 35679999999999999999999999
Q ss_pred CceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 70 EVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 70 ~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
+.+|+++++ |+++|+++|..++.++..+.+|++++++.+ ++|+|+.+++++.+.+..+..+
T Consensus 613 g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v-~~FSWe~ia~~yl~~i~~~~~~ 674 (1050)
T TIGR02468 613 LDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNI-HLFSWPEHCKTYLSRIASCRPR 674 (1050)
T ss_pred CCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhcc
Confidence 999999998 999999999999999999999999999998 5799999999999999887543
No 11
>PLN02949 transferase, transferring glycosyl groups
Probab=99.80 E-value=1.9e-18 Score=125.77 Aligned_cols=127 Identities=18% Similarity=0.259 Sum_probs=104.1
Q ss_pred ceEeecCccc---hhhHHHHHHHHHHcCCCCeEEecccc--------------------ccccC-CchhhhhcCCCEEec
Q 043097 3 DVILVNSKFT---ATTFANTFKKLHARGIHPVVLYPAVN--------------------VYQFD-KPHSSMAAYKPVIAC 58 (134)
Q Consensus 3 ~~v~~~s~~~---~~~~~~~~~~~~~~~~~~~v~~~g~~--------------------~~~~~-~~~eAma~G~pvi~s 58 (134)
.++++|+... ....+++++.+.++++.+.|.|.|.- .+.|+ .+.|||++|+|||++
T Consensus 305 ~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~ 384 (463)
T PLN02949 305 KLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAH 384 (463)
T ss_pred EEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEe
Confidence 5788887532 23457888999999999999998851 12233 688999999999999
Q ss_pred cCCCcc-cceee---CceEEEecCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 59 DSGGPV-ETIKN---EVVGFLCNPTPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 59 ~~~~~~-e~i~~---~~~g~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
+.||.. +++.+ +.+|++++ |+++++++|.++++ ++..+.+|++++++.+ ++|||+.+.+++.+.+++++.+
T Consensus 385 ~~gGp~~eIV~~~~~g~tG~l~~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 385 NSAGPKMDIVLDEDGQQTGFLAT-TVEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CCCCCcceeeecCCCCcccccCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 998864 66654 56788886 99999999999998 6788899999999998 6799999999999999988754
No 12
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.80 E-value=1.3e-18 Score=127.33 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=98.9
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------ccccC----------CchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQFD----------KPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~----------~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++.+. ..+++.+.+.++++.+.|.|.|.. .|.|. .++|||+||+|||+|+.++.
T Consensus 431 rLvIVGdG~---~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~ 507 (578)
T PRK15490 431 RFVLVGDGD---LRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGS 507 (578)
T ss_pred EEEEEeCch---hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCc
Confidence 567777543 345688888999999999999972 22332 45679999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSM---AKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
.|++.++.+|+++++ |++++++.+ ..+......+..|++++++++.++|||+.+.++|.++|.+
T Consensus 508 ~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 508 AECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 999999999999998 787877766 3344455556678999999999999999999999999975
No 13
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.80 E-value=1.2e-18 Score=127.78 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=98.2
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc--------ccccC----------CchhhhhcCCCEEeccCC-Cc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN--------VYQFD----------KPHSSMAAYKPVIACDSG-GP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~--------~~~~~----------~~~eAma~G~pvi~s~~~-~~ 63 (134)
.++++|.+.. .+.+.+.+.++++.+.|.|.|.. .+.|. ++.||||||+|||+|+++ |.
T Consensus 352 ~l~i~G~G~~---~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~ 428 (500)
T TIGR02918 352 TFDIYGEGGE---KQKLQKIINENQAQDYIHLKGHRNLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGN 428 (500)
T ss_pred EEEEEECchh---HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCC
Confidence 4566776533 35577888888999999999961 22222 466799999999999986 89
Q ss_pred ccceeeCceEEEecC-----C----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-----T----PQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-----~----~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
+|++.++.+|++++. | +++++++|.+++ +++.+.+|++++++.+ +.|||+.+.++|.++++++
T Consensus 429 ~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~~~~~~~~~a~~~a-~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 429 PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSNDIDAFHEYSYQIA-EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhC
Confidence 999999999999973 2 889999999999 4667899999999976 7899999999999998763
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.79 E-value=1.8e-18 Score=122.98 Aligned_cols=86 Identities=29% Similarity=0.443 Sum_probs=80.4
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TP------QEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~------~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
..+|||++|+|||+|+.++..|++.++.+|++++. |+ ++++++|.+++.++..+.+|++++++.+.++|||+.
T Consensus 296 ~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 296 VNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45789999999999999999999999889999987 77 999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHh
Q 043097 117 FGQHLNRLLAYVA 129 (134)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (134)
+++++.++|++++
T Consensus 376 ~~~~~~~~y~~~~ 388 (388)
T TIGR02149 376 IAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999763
No 15
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.79 E-value=2.9e-18 Score=122.07 Aligned_cols=119 Identities=34% Similarity=0.545 Sum_probs=98.5
Q ss_pred ceEeecCccch-----hhHHHHHHHHHH-cCCCCeEEecccc-----------cc----------ccCCchhhhhcCCCE
Q 043097 3 DVILVNSKFTA-----TTFANTFKKLHA-RGIHPVVLYPAVN-----------VY----------QFDKPHSSMAAYKPV 55 (134)
Q Consensus 3 ~~v~~~s~~~~-----~~~~~~~~~~~~-~~~~~~v~~~g~~-----------~~----------~~~~~~eAma~G~pv 55 (134)
.++++|+.... ...+++.+.+.+ +++++.|.|+|.- .+ ...+++|||+||+||
T Consensus 247 ~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~Pv 326 (392)
T cd03805 247 RLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPV 326 (392)
T ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCE
Confidence 56777764322 234677888888 8888889888861 11 123577899999999
Q ss_pred EeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 56 IACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 56 i~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
|+|+.++..|++.++.+|++++.|++++++.+.+++.++..+.+|++++++++.++|+|+.+.+++
T Consensus 327 I~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 327 IACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred EEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 999999999999998899998779999999999999999999999999999999999999988763
No 16
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.79 E-value=2.1e-18 Score=124.01 Aligned_cols=107 Identities=24% Similarity=0.247 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCCCeEEecccc-------------ccccC----------CchhhhhcCCCEEeccCCCcccceeeCce
Q 043097 16 FANTFKKLHARGIHPVVLYPAVN-------------VYQFD----------KPHSSMAAYKPVIACDSGGPVETIKNEVV 72 (134)
Q Consensus 16 ~~~~~~~~~~~~~~~~v~~~g~~-------------~~~~~----------~~~eAma~G~pvi~s~~~~~~e~i~~~~~ 72 (134)
...+++.+..++..+.|.|+|.- .+.|. +++|||++|+|||+|++||.+|++.++.+
T Consensus 275 ~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~ 354 (407)
T cd04946 275 EDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGN 354 (407)
T ss_pred HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCc
Confidence 34466677677778889998861 22232 35679999999999999999999999988
Q ss_pred EEEecC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 73 GFLCNP--TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 73 g~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
|+++++ |+++++++|.+++.|+..+.+|++++++.+.++|+|+...+++.
T Consensus 355 G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 355 GLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 998875 69999999999999999999999999999999999999988875
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.78 E-value=6.9e-18 Score=120.38 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=77.1
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEE-EecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGF-LCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~-~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
..+|||+||+|||+|+.|+..|++.++.+|+ ++++ |+++++++|.++++|+.. .+|++++++.+.++|+|+.+++++
T Consensus 293 ~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~ 371 (380)
T PRK15484 293 VAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRF 371 (380)
T ss_pred HHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999999999999999998 4556 999999999999999975 789999999998999999999999
Q ss_pred HHHHHHHh
Q 043097 122 NRLLAYVA 129 (134)
Q Consensus 122 ~~~~~~~~ 129 (134)
.++|++..
T Consensus 372 ~~~l~~~~ 379 (380)
T PRK15484 372 EEQIHNWF 379 (380)
T ss_pred HHHHHHhc
Confidence 99998753
No 18
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.78 E-value=6.3e-18 Score=119.22 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=97.8
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------------CchhhhhcCCCE
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------------KPHSSMAAYKPV 55 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------------~~~eAma~G~pv 55 (134)
++++++.+. ..+++.+.+.++++.+.+.|.|. ..+.+. .+.|||+||+||
T Consensus 221 ~l~ivG~g~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~Pv 297 (367)
T cd05844 221 RLVIIGDGP---LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPV 297 (367)
T ss_pred EEEEEeCch---HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCE
Confidence 566777532 23456777777778888888885 122221 466899999999
Q ss_pred EeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 56 IACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 56 i~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
|+|+.++..|++.++.+|+++++ |+++++++|.+++++++.+.++++++++++.++|||+.+++++.+
T Consensus 298 I~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 298 VATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred EEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999999999999999987 899999999999999999999999999999899999999998875
No 19
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.78 E-value=2e-18 Score=130.07 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=101.6
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------ccccC----------CchhhhhcCCCEEeccCCC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQFD----------KPHSSMAAYKPVIACDSGG 62 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~----------~~~eAma~G~pvi~s~~~~ 62 (134)
.++++++.+. ..+++.+.+.++++.+.|.|+|.. .+.|. +++|||+||+|||+|+++|
T Consensus 549 ~~LvIvG~G~---~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG 625 (694)
T PRK15179 549 VRFIMVGGGP---LLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG 625 (694)
T ss_pred eEEEEEccCc---chHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCC
Confidence 3578888653 345578888999999999999972 22222 4567999999999999999
Q ss_pred cccceeeCceEEEecC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 63 PVETIKNEVVGFLCNP-T--PQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 63 ~~e~i~~~~~g~~~~~-~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
..|++.++.+|+++++ | ++++++++.+++.+......+++++++++.++|||+.+.+++.++|+
T Consensus 626 ~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 626 AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999986 4 56899999888887766677889999999899999999999999995
No 20
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.78 E-value=4.1e-18 Score=121.97 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=74.6
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+++|||+||+|||+|+.++..|++.++.+|+++++ |+++++++|.+++.+++.+.+|++++++.+.++|+|+.+.++|.
T Consensus 316 ~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 316 SLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 46799999999999999999999999889999988 89999999999999999999999999999988899999998875
No 21
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.78 E-value=1e-17 Score=120.03 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=100.1
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------CchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------~~~eAma~G~pvi~s~~~ 61 (134)
.+++++.+.. ...+.+.+.++++.+.|.|+|. ..|.+. ++.|||+||+|||+|+.+
T Consensus 226 ~l~i~G~g~~---~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 226 RFIIGGDGPK---RILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred EEEEEeCCch---HHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 4566665432 3457778888889899999985 122222 566899999999999999
Q ss_pred CcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 62 GPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
+..|++.++. ++++++|++++++++.+++.++.....+++++++.+.++|||+.+++++.++|++++..
T Consensus 303 g~~e~i~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 303 GIPEVLPPDM-ILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred CchhheeCCc-eeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcC
Confidence 9999998764 45555589999999999999877666788899999999999999999999999998753
No 22
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.77 E-value=8.7e-18 Score=120.79 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=100.7
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC--------------CchhhhhcCCCEE
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD--------------KPHSSMAAYKPVI 56 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~--------------~~~eAma~G~pvi 56 (134)
.+++++|.+.. .+++.+.+.++++. .|.|.|. ..|.+. ...|||+||+|||
T Consensus 260 ~~l~ivG~g~~---~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi 335 (412)
T PRK10307 260 LIFVICGQGGG---KARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVV 335 (412)
T ss_pred eEEEEECCChh---HHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEE
Confidence 35778886543 34577778888886 4888885 122211 2458999999999
Q ss_pred eccCCC--cccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 57 ACDSGG--PVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 57 ~s~~~~--~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
+|+.++ ..+++. .+|+++++ |+++++++|.++++++..+..|++++++++.++|||+.+.+++.++|++++..
T Consensus 336 ~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 336 ATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred EEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999876 457776 47999988 99999999999999999999999999999999999999999999999998765
No 23
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.77 E-value=1.1e-17 Score=122.08 Aligned_cols=86 Identities=24% Similarity=0.401 Sum_probs=79.4
Q ss_pred CchhhhhcCCCEEeccCCCcccceee---CceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKN---EVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQ 119 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~---~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 119 (134)
.++|||+||+|||+|+.++..|++.+ +.+|+++++ |+++++++|..++++++.+.+|++++++.+ ++|+|+.+++
T Consensus 347 ~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~fsw~~~a~ 425 (465)
T PLN02871 347 VVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEV-EKWDWRAATR 425 (465)
T ss_pred HHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHH
Confidence 46689999999999999999999988 889999988 999999999999999999999999999988 5899999999
Q ss_pred HHHH-HHHHHhc
Q 043097 120 HLNR-LLAYVAR 130 (134)
Q Consensus 120 ~~~~-~~~~~~~ 130 (134)
++.+ .|++++.
T Consensus 426 ~l~~~~Y~~~~~ 437 (465)
T PLN02871 426 KLRNEQYSAAIW 437 (465)
T ss_pred HHHHHHHHHHHH
Confidence 9998 6987753
No 24
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.75 E-value=2.2e-17 Score=116.06 Aligned_cols=101 Identities=22% Similarity=0.432 Sum_probs=90.5
Q ss_pred CCCeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 28 IHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARH 106 (134)
Q Consensus 28 ~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 106 (134)
..+.+++|+..+.....+.|||++|+|||+++.++..+++.++.+|++++. |++++++++.+++.+++.+.++++++++
T Consensus 264 ~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 264 AADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred hCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 446677776655555578899999999999999999999999888999988 8999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 043097 107 HVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 107 ~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+.++|||+.+++++.++|+++
T Consensus 344 ~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 344 LAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHhcCHHHHHHHHHHHHhhC
Confidence 9989999999999999999864
No 25
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.74 E-value=3.9e-17 Score=115.99 Aligned_cols=83 Identities=31% Similarity=0.444 Sum_probs=77.4
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
.++|||+||+|||+|+.++..+++.++.+|++++ ++++++.++.+++.+++.+..|++++++.+.++|+|+.+++++.+
T Consensus 289 ~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~-~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 289 TVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD-TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHHHHcCCCEEEcCCCCchhhcccCCceEEeC-CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5678999999999999999999999999999887 678899999999999999999999999999889999999999999
Q ss_pred HHHH
Q 043097 124 LLAY 127 (134)
Q Consensus 124 ~~~~ 127 (134)
+|+.
T Consensus 368 ~~~~ 371 (372)
T cd03792 368 LISK 371 (372)
T ss_pred HHHh
Confidence 9986
No 26
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.72 E-value=1.4e-16 Score=111.01 Aligned_cols=120 Identities=23% Similarity=0.350 Sum_probs=93.4
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-------------------cccccCCchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-------------------NVYQFDKPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-------------------~~~~~~~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++............. .+.++.+.+.+.|. .......+.|||+||+|||+++.++.
T Consensus 226 ~l~i~G~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~ 303 (365)
T cd03807 226 RLLLVGDGPDRANLELLAL--KELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDN 303 (365)
T ss_pred EEEEecCCcchhHHHHHHH--HhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCCh
Confidence 3566665443333222222 25566666766663 22222367799999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
.+++.+ +|++++. |++++++++..++++++.+.++++++++.+.++|||+++.+++.++|+
T Consensus 304 ~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 304 AELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999977 6888887 899999999999999999999999999999999999999999999884
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.72 E-value=1.5e-16 Score=113.19 Aligned_cols=120 Identities=17% Similarity=0.312 Sum_probs=95.9
Q ss_pred ceEeecCccch---hhHHHHHHHHHHcCCCCeEEeccc-----------cccc----------cCCchhhhhcCCCEEec
Q 043097 3 DVILVNSKFTA---TTFANTFKKLHARGIHPVVLYPAV-----------NVYQ----------FDKPHSSMAAYKPVIAC 58 (134)
Q Consensus 3 ~~v~~~s~~~~---~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~----------~~~~~eAma~G~pvi~s 58 (134)
.+++++..... .....+.+.+..+++.+.+.|.|. ..+. ...+.|||++|+|||++
T Consensus 253 ~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 253 NLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVAT 332 (398)
T ss_pred EEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEEC
Confidence 46677654332 122345556666677777777775 1112 22577899999999999
Q ss_pred cCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 59 DSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 59 ~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+.++..+++.++.+|+++++ |++++++.|.++++++..+..|++++++.+.++|||+.+++++.
T Consensus 333 ~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 333 AVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 99999999999889999988 89999999999999999999999999999989999999999875
No 28
>PLN02939 transferase, transferring glycosyl groups
Probab=99.72 E-value=2.1e-16 Score=121.13 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=99.2
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------CchhhhhcCCCEEeccC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------KPHSSMAAYKPVIACDS 60 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------~~~eAma~G~pvi~s~~ 60 (134)
+.++++|++........+......++..+.|.|.|. ..|.|. +++|||+||+|+|++++
T Consensus 809 vqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~v 888 (977)
T PLN02939 809 GQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKT 888 (977)
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecC
Confidence 357888877544444556677777777777877764 122333 35569999999999999
Q ss_pred CCcccceee---------CceEEEecC-CHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 61 GGPVETIKN---------EVVGFLCNP-TPQEFSLSMAKLIQ----EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 61 ~~~~e~i~~---------~~~g~~~~~-~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
||+.+++.+ +.+|+++++ |+++++++|.+++. ++..+..|++++. .+.|||+.++++|.++|+
T Consensus 889 GGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am---~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 889 GGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDM---NIDFSWDSSASQYEELYQ 965 (977)
T ss_pred CCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Confidence 999998865 468999988 99999999988765 7899999987664 478999999999999999
Q ss_pred HHhcC
Q 043097 127 YVARG 131 (134)
Q Consensus 127 ~~~~~ 131 (134)
.++.+
T Consensus 966 ~ll~~ 970 (977)
T PLN02939 966 RAVAR 970 (977)
T ss_pred HHHHh
Confidence 98754
No 29
>PHA01630 putative group 1 glycosyl transferase
Probab=99.72 E-value=1.4e-16 Score=111.77 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=80.5
Q ss_pred CCCCeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEe--------------------cCCHHHHHHH
Q 043097 27 GIHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLC--------------------NPTPQEFSLS 86 (134)
Q Consensus 27 ~~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~--------------------~~~~~~l~~~ 86 (134)
...|..++|+..+.....++||||||+|||+|+.+|..|++.++.+|+++ ++|.++++++
T Consensus 208 ~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ 287 (331)
T PHA01630 208 AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQK 287 (331)
T ss_pred HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHH
Confidence 34578888888655555789999999999999999999999888776665 4477888888
Q ss_pred HHHHhcCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 87 MAKLIQEP--QMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 87 i~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
+.+++.++ +.+.++..++.+.+.++|||+++++++.++|++
T Consensus 288 ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 288 LLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 98988863 445555555555667899999999999999964
No 30
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.71 E-value=1.2e-16 Score=113.30 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=91.9
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------c----------cccCCchhhhhcCCCEEeccCC-C
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------V----------YQFDKPHSSMAAYKPVIACDSG-G 62 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~----------~~~~~~~eAma~G~pvi~s~~~-~ 62 (134)
++++++..... ..+...+.++++.+.+.+.|.. . ......+|||++|+|||+++.+ +
T Consensus 237 ~l~i~G~g~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g 313 (372)
T cd04949 237 TLDIYGYGDEE---EKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG 313 (372)
T ss_pred EEEEEEeCchH---HHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC
Confidence 45666654332 3355556667777888888741 1 1122567899999999999987 7
Q ss_pred cccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 63 PVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 63 ~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
..+++.++.+|+++++ |+++++++|..++.++..+..+++++++.. ++|||+++.++|
T Consensus 314 ~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 314 PSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred cHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 8999999999999998 999999999999999999999999999985 799999998765
No 31
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.71 E-value=1.4e-16 Score=112.84 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=95.8
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc-------------ccccC----------CchhhhhcCCCEEecc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN-------------VYQFD----------KPHSSMAAYKPVIACD 59 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-------------~~~~~----------~~~eAma~G~pvi~s~ 59 (134)
++++++.+-. .+.+.+.+.++++.+.|.|.|.. .+.+. ..+|||+||+|||+|+
T Consensus 212 ~l~ivG~g~~---~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~ 288 (359)
T PRK09922 212 QLHIIGDGSD---FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSD 288 (359)
T ss_pred EEEEEeCCcc---HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeC
Confidence 5777776533 34577888888888899999852 12222 4567999999999999
Q ss_pred -CCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 60 -SGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 60 -~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
.++..|++.++.+|+++++ |+++++++|.++++++..+. .++.....++|+.+.+.+++.+.|..+.+
T Consensus 289 ~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 289 CMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred CCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 8899999999999999988 99999999999999987541 22333344788889999999999998765
No 32
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.71 E-value=1.5e-16 Score=116.19 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=92.4
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc----------ccccC----------CchhhhhcCCCEEeccCC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN----------VYQFD----------KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~----------~~~~~----------~~~eAma~G~pvi~s~~~ 61 (134)
..+++++.+. ....+.+.+.+.+++. ...++.|.+ .|.|. +.+|||+||+|+|++++|
T Consensus 312 ~~lvivG~g~-~~~~~~l~~l~~~~~~-~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g 389 (466)
T PRK00654 312 GQLVLLGTGD-PELEEAFRALAARYPG-KVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG 389 (466)
T ss_pred CEEEEEecCc-HHHHHHHHHHHHHCCC-cEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC
Confidence 3567777542 2233455666655543 233445541 22222 455799999999999999
Q ss_pred CcccceeeC------ceEEEecC-CHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 62 GPVETIKNE------VVGFLCNP-TPQEFSLSMAKLIQ---EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 62 ~~~e~i~~~------~~g~~~~~-~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
|+.|++.++ .+|+++++ |+++++++|.+++. ++..+.+|++++. .+.|||+.+++++.++|++++.
T Consensus 390 G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 390 GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAM---AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHHhh
Confidence 999999887 88999998 99999999999876 6777788887775 3689999999999999999875
No 33
>PLN02316 synthase/transferase
Probab=99.70 E-value=5.1e-16 Score=120.37 Aligned_cols=128 Identities=10% Similarity=0.026 Sum_probs=98.7
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCC--CCeEEeccc-----------cccccC----------CchhhhhcCCCEEec
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGI--HPVVLYPAV-----------NVYQFD----------KPHSSMAAYKPVIAC 58 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~--~~~v~~~g~-----------~~~~~~----------~~~eAma~G~pvi~s 58 (134)
+.+|+++++....+...+.++..++++ .+.+.|.+. ..|.|. +.+|||+||+|+|++
T Consensus 870 ~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs 949 (1036)
T PLN02316 870 GQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVR 949 (1036)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEE
Confidence 457888877544445566677776654 345655432 123333 455699999999999
Q ss_pred cCCCcccceeeC-------------ceEEEecC-CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 59 DSGGPVETIKNE-------------VVGFLCNP-TPQEFSLSMAKLIQE-PQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 59 ~~~~~~e~i~~~-------------~~g~~~~~-~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
++||+++++.++ .+|+++++ |+++++.+|.+++.+ +..+..+++.+++.+.+.|||+.++++|.+
T Consensus 950 ~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~ 1029 (1036)
T PLN02316 950 KTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYME 1029 (1036)
T ss_pred cCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 999999999773 58999998 999999999999986 355666788888888889999999999999
Q ss_pred HHHHHh
Q 043097 124 LLAYVA 129 (134)
Q Consensus 124 ~~~~~~ 129 (134)
+|+.+.
T Consensus 1030 LY~~a~ 1035 (1036)
T PLN02316 1030 LYHSAR 1035 (1036)
T ss_pred HHHHHh
Confidence 999875
No 34
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.70 E-value=3.8e-16 Score=109.80 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=71.3
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
.++|||+||+|||+|+.++..|++.+ +|.++++ ++ +++.+.+++.+++.+..+++++++.+.++|||+.+++++.
T Consensus 284 ~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 284 SLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred HHHHHHHcCCCEEEecCCccceeecC--CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57889999999999999999999866 5787775 43 9999999999999999999999999988899999999999
Q ss_pred HHHH
Q 043097 123 RLLA 126 (134)
Q Consensus 123 ~~~~ 126 (134)
++|+
T Consensus 360 ~~y~ 363 (363)
T cd04955 360 ELYK 363 (363)
T ss_pred HHhC
Confidence 9884
No 35
>PRK14099 glycogen synthase; Provisional
Probab=99.70 E-value=1.7e-16 Score=116.40 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=74.8
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeC---------ceEEEecC-CHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNE---------VVGFLCNP-TPQEFSLSMAK---LIQEPQMAKKMGENARHHVME 110 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~---------~~g~~~~~-~~~~l~~~i~~---~~~~~~~~~~~~~~~~~~~~~ 110 (134)
+.+|||+||+|+|++++||+.|++.++ .+|+++++ |+++++++|.+ ++.|++.+.+|+++++ .+
T Consensus 385 ~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~---~~ 461 (485)
T PRK14099 385 TQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGM---TT 461 (485)
T ss_pred HHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh---hh
Confidence 445799999999999999999998764 58999998 99999999997 6779999999999886 37
Q ss_pred hcCHHHHHHHHHHHHHHHhcC
Q 043097 111 SFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 111 ~~s~~~~~~~~~~~~~~~~~~ 131 (134)
.|||+++++++.++|++++.+
T Consensus 462 ~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 462 DVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred cCChHHHHHHHHHHHHHHHhh
Confidence 899999999999999998754
No 36
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.70 E-value=1.9e-16 Score=115.79 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=73.9
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeC------ceEEEecC-CHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNE------VVGFLCNP-TPQEFSLSMAKLIQ----EPQMAKKMGENARHHVMESF 112 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~------~~g~~~~~-~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~ 112 (134)
..+|||+||+|+|+|+.+|+.|++.++ .+|+++++ |+++++++|.+++. +++.+.+|++++. .+.|
T Consensus 381 ~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~~f 457 (473)
T TIGR02095 381 TQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAM---SQDF 457 (473)
T ss_pred HHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCC
Confidence 455799999999999999999999887 88999988 99999999999888 8888999988875 3689
Q ss_pred CHHHHHHHHHHHHHHH
Q 043097 113 STKIFGQHLNRLLAYV 128 (134)
Q Consensus 113 s~~~~~~~~~~~~~~~ 128 (134)
||++++++|.++|+++
T Consensus 458 sw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 458 SWDKSAKQYVELYRSL 473 (473)
T ss_pred CcHHHHHHHHHHHHhC
Confidence 9999999999999864
No 37
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.69 E-value=5.4e-16 Score=108.47 Aligned_cols=96 Identities=26% Similarity=0.415 Sum_probs=84.4
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHV 108 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 108 (134)
+.+++++........++|||+||+|||+++.++..+++.++.+|+++++ +++++++.+.+++.+++.+.++++++++.+
T Consensus 268 d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 268 DVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred CEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5555555554444578899999999999999999999998889999988 899999999999999999999999999988
Q ss_pred HHhcCHHHHHHHHHHHHH
Q 043097 109 MESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 109 ~~~~s~~~~~~~~~~~~~ 126 (134)
++|+|+.+.+++.++|+
T Consensus 348 -~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 348 -ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred -hhcCHHHHHHHHHHhhC
Confidence 78999999999998873
No 38
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.69 E-value=4.6e-16 Score=108.98 Aligned_cols=77 Identities=27% Similarity=0.494 Sum_probs=72.3
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
.+.|||++|+|+|+++.++.++++.++.+|++++. |+++++++|.+++.++..+..+++++++.+.++|+|+..+++
T Consensus 277 ~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 277 VLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 56789999999999999999999999888999988 899999999999999999999999999999999999998865
No 39
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.69 E-value=3e-16 Score=112.81 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=77.1
Q ss_pred CCCeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHH----HHH
Q 043097 28 IHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKK----MGE 102 (134)
Q Consensus 28 ~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~----~~~ 102 (134)
..|.+++|+..+....+++||||||+|||+|++||.+|++.++ +|+++++ |+++|++.+ ++..+.. +.+
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~-----~~~~~~~~~~~~~~ 379 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLS-----KPEIAQAVFGTTLA 379 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhcc-----CHHHHHHhhhhHHH
Confidence 3577888888655555788999999999999999999999775 8999999 999999854 3333332 235
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 103 NARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 103 ~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
++++++.++|||+.++++|.++|+++
T Consensus 380 ~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 380 EFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 57888888999999999999999864
No 40
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.68 E-value=9.7e-16 Score=107.34 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=73.4
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
.+.|||++|+|||+++.++ .+.+.++.+|++++. |++++++++..+++++..+.+|++++++.+.+ |||+.+++++.
T Consensus 285 ~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~ 362 (366)
T cd03822 285 VLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYL 362 (366)
T ss_pred HHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHH
Confidence 5678999999999999999 666777778999988 89999999999999999999999999998865 99999999999
Q ss_pred HHHH
Q 043097 123 RLLA 126 (134)
Q Consensus 123 ~~~~ 126 (134)
++|+
T Consensus 363 ~~~~ 366 (366)
T cd03822 363 RLLA 366 (366)
T ss_pred HHhC
Confidence 9873
No 41
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.68 E-value=4.7e-16 Score=108.99 Aligned_cols=112 Identities=22% Similarity=0.335 Sum_probs=91.0
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc-----------cccc-----------C-CchhhhhcCCCEEecc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN-----------VYQF-----------D-KPHSSMAAYKPVIACD 59 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-----------~~~~-----------~-~~~eAma~G~pvi~s~ 59 (134)
.+++++++... ..+.+.+.+.+..+.|.|.|.- .+.+ + .+.|||++|+|||+|+
T Consensus 220 ~l~i~G~g~~~---~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~ 296 (357)
T cd03795 220 PLVIVGEGPLE---AELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTE 296 (357)
T ss_pred EEEEEeCChhH---HHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecC
Confidence 56777765433 3355666667788888888851 2221 1 3568999999999999
Q ss_pred CCCcccceee-CceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHH
Q 043097 60 SGGPVETIKN-EVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIF 117 (134)
Q Consensus 60 ~~~~~e~i~~-~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 117 (134)
.++..+.+.+ +.+|++++. |++++++++..++++++.+..|++++++.+.++|||+.+
T Consensus 297 ~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 297 IGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred CCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 9999998875 889999987 899999999999999999999999999999999999976
No 42
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.68 E-value=6.3e-16 Score=111.63 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred cceEeecCccch---hhHHHHHHHHHHcCCCCeEEeccc-----------cccc---------c-CCchhhhhcCCCEEe
Q 043097 2 ADVILVNSKFTA---TTFANTFKKLHARGIHPVVLYPAV-----------NVYQ---------F-DKPHSSMAAYKPVIA 57 (134)
Q Consensus 2 a~~v~~~s~~~~---~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~---------~-~~~~eAma~G~pvi~ 57 (134)
..++++|+.... ...+++++++.++++.+.|.|.|. ..+. | ..+.|||+||+|||+
T Consensus 274 ~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa 353 (419)
T cd03806 274 IKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA 353 (419)
T ss_pred eEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE
Confidence 457888875322 356778888999999999999985 1111 2 257789999999999
Q ss_pred ccCCCc-cccee---eCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 043097 58 CDSGGP-VETIK---NEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQ 119 (134)
Q Consensus 58 s~~~~~-~e~i~---~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 119 (134)
++.+|. .+++. ++.+|++++ |+++++++|.+++.++.....+..++++.+.++|||+.+.+
T Consensus 354 ~~~ggp~~~iv~~~~~g~~G~l~~-d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 354 HASGGPLLDIVVPWDGGPTGFLAS-TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred EcCCCCchheeeccCCCCceEEeC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 998764 57777 788999986 99999999999999665444444555666778999998753
No 43
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.68 E-value=1.1e-15 Score=106.91 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=91.3
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc---------------------cccccCCchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV---------------------NVYQFDKPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~---------------------~~~~~~~~~eAma~G~pvi~s~~~ 61 (134)
.+++++.... .........+.++++.+.+.|.|. .+.....+.|||+||+|||+++.+
T Consensus 236 ~l~i~G~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~ 314 (375)
T cd03821 236 HLVIAGPDEG-GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV 314 (375)
T ss_pred EEEEECCCCc-chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC
Confidence 4556664322 222233333466677777777775 111122467899999999999999
Q ss_pred CcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 62 GPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+..+++.+ ..|++++.++++++++|.+++.++..+..+++++++.+.++|+|+.+++++.
T Consensus 315 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 315 PWQELIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CHHHHhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999988 6789888777999999999999999999999999999889999999998875
No 44
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.68 E-value=1.4e-15 Score=106.71 Aligned_cols=118 Identities=19% Similarity=0.293 Sum_probs=92.0
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------cccc----------CCchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQF----------DKPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~----------~~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++++... ..+.+.+.++++.+.+.+.|.. .+.+ ..+.|||++|+|||+++.++.
T Consensus 221 ~l~i~G~g~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 297 (360)
T cd04951 221 KLLIAGDGPLR---ATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGV 297 (360)
T ss_pred EEEEEcCCCcH---HHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCCh
Confidence 45667655433 3466667777777888888751 2222 246689999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
.|++.+ +|+++.. |++++++++.+++. ++..+..++++ ++.+.++|||+.+++++.++|+
T Consensus 298 ~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 298 REVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred hhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999976 5788777 89999999999984 66667777666 7778899999999999999996
No 45
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.68 E-value=1e-15 Score=106.28 Aligned_cols=79 Identities=32% Similarity=0.513 Sum_probs=74.1
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
.+.|||++|+|||+|+.++..+++.++.+|++++. |++++++++..++.+++.+.++++++++++.++|+|+.+.+++.
T Consensus 279 ~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 279 VLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 56789999999999999999999988889999988 89999999999999999999999999999889999999998875
No 46
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.67 E-value=1.5e-15 Score=105.53 Aligned_cols=83 Identities=29% Similarity=0.513 Sum_probs=77.7
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
.+.|||++|+|||+++.++..+++.++.+|++++. |++++++++.+++.++..+.++++++++.+.+.|+|+++.+++.
T Consensus 291 ~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 291 VLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred hHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 57789999999999999999999998889999988 79999999999999999999999999988889999999999999
Q ss_pred HHHH
Q 043097 123 RLLA 126 (134)
Q Consensus 123 ~~~~ 126 (134)
++|+
T Consensus 371 ~~~~ 374 (374)
T cd03801 371 EVYY 374 (374)
T ss_pred HhhC
Confidence 8873
No 47
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.67 E-value=6.6e-16 Score=89.51 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.9
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
.+.|+|+||+|+|+++.+++.+++.++..++++. |++++.+++..+++||..+.++++++++++.++|+|+..++++.
T Consensus 14 r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~-~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 14 RIFEAMACGTPVISDDSPGLREIFEDGEHIITYN-DPEELAEKIEYLLENPEERRRIAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC-CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6789999999999999999999999998888888 99999999999999999999999999999999999999998875
No 48
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.66 E-value=1.3e-15 Score=109.85 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=89.7
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC-------------CchhhhhcCCCEEec
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD-------------KPHSSMAAYKPVIAC 58 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~-------------~~~eAma~G~pvi~s 58 (134)
.++++|.+.. .+++.+.++++++++.+++.|. ..|.+. .+.|||+||+|||+|
T Consensus 271 ~l~ivG~G~~---~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s 347 (415)
T cd03816 271 LCIITGKGPL---KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAL 347 (415)
T ss_pred EEEEEecCcc---HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEe
Confidence 4567776543 4568888888999888888763 123322 257899999999999
Q ss_pred cCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 59 DSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE---PQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 59 ~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
+.++..|++.++.+|++++ |+++++++|..+++| ++.+.+|++++++.. .++|++.-.+
T Consensus 348 ~~~~~~eiv~~~~~G~lv~-d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~--~~~~~~~~~~ 409 (415)
T cd03816 348 DFKCIDELVKHGENGLVFG-DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES--ELRWDENWDR 409 (415)
T ss_pred CCCCHHHHhcCCCCEEEEC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh--hcCHHHHHHH
Confidence 9999999999999999996 999999999999999 899999999999876 5666654443
No 49
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.66 E-value=8.6e-16 Score=107.78 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=92.1
Q ss_pred ceEeecCccch-hhHHHHHHHHHHcCCCCeEEecccc---------ccccC-----------CchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTA-TTFANTFKKLHARGIHPVVLYPAVN---------VYQFD-----------KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~-----------~~~eAma~G~pvi~s~~~ 61 (134)
.+++++..... ...+.+.+.+.++++.+.|.|.|.. .+.+. .+.|||++|+|||+++.+
T Consensus 218 ~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~ 297 (355)
T cd03819 218 HLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG 297 (355)
T ss_pred EEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC
Confidence 46777765443 3445666777777888888888862 22222 355799999999999999
Q ss_pred CcccceeeCceEEEecC-CHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhcCHHHH
Q 043097 62 GPVETIKNEVVGFLCNP-TPQEFSLSMAKLI-QEPQMAKKMGENARHHVMESFSTKIF 117 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~ 117 (134)
+..+++.++.+|+++++ |+++++++|..++ .+++.+.++++++++.+.++|+|+.+
T Consensus 298 ~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 298 GARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred CcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999889999988 8999999996555 48999999999999999999999863
No 50
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.66 E-value=2.3e-15 Score=104.15 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=88.8
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-------------------cccccCCchhhhhcCCCEEeccCC-C
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-------------------NVYQFDKPHSSMAAYKPVIACDSG-G 62 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-------------------~~~~~~~~~eAma~G~pvi~s~~~-~ 62 (134)
.+++++...... .+.+.+.+.++.+.+.+.|. .+.....+.|||++|+|||+++.+ +
T Consensus 211 ~l~i~G~~~~~~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 287 (348)
T cd03820 211 KLRIVGDGPERE---ALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG 287 (348)
T ss_pred EEEEEeCCCCHH---HHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCc
Confidence 456666543332 34555666677777777774 111122577899999999999875 5
Q ss_pred cccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 63 PVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 63 ~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
..+++.++.+|++++. |++++++++.+++.+++.+..|++++++.+ +.|+|+++.++|.
T Consensus 288 ~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 288 PSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred hHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 5667777778999988 899999999999999999999999997655 7899999998875
No 51
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.66 E-value=2.7e-15 Score=104.51 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=66.6
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
.++|||+||+|||+|+.++..|++.++.+|++++ +++++++++..+.... .+++++.+.++|||+.++++|.+
T Consensus 260 ~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~-~~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~~ 332 (335)
T cd03802 260 VMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVD-SVEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYLA 332 (335)
T ss_pred HHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeC-CHHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 5778999999999999999999999998999998 4999999999886543 24567778899999999999999
Q ss_pred HHH
Q 043097 124 LLA 126 (134)
Q Consensus 124 ~~~ 126 (134)
+|+
T Consensus 333 ~y~ 335 (335)
T cd03802 333 LYR 335 (335)
T ss_pred HhC
Confidence 984
No 52
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.63 E-value=3.6e-15 Score=106.88 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=70.6
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
.++|||+||+|||+|+.++ ..+...+.+|+++..|+++++++|.+++.|+..+.+|++++++++.++|||+...+++.+
T Consensus 314 ~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~ 392 (397)
T TIGR03087 314 KVLEAMAMAKPVVASPEAA-EGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDA 392 (397)
T ss_pred HHHHHHHcCCCEEecCccc-ccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4778999999999998753 233334456888766899999999999999999999999999999899999999999998
Q ss_pred HHH
Q 043097 124 LLA 126 (134)
Q Consensus 124 ~~~ 126 (134)
+|.
T Consensus 393 ~l~ 395 (397)
T TIGR03087 393 LLE 395 (397)
T ss_pred Hhc
Confidence 875
No 53
>PRK14098 glycogen synthase; Provisional
Probab=99.63 E-value=4.2e-15 Score=109.16 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=90.0
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------CchhhhhcCCCEEeccC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------KPHSSMAAYKPVIACDS 60 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------~~~eAma~G~pvi~s~~ 60 (134)
..+++++++-. ...+.+.+.+.+++ +.|.+.|. ..|.|. ..+|||+||+|+|++++
T Consensus 337 ~~lvivG~G~~-~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~ 413 (489)
T PRK14098 337 IQLVICGSGDK-EYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAG 413 (489)
T ss_pred cEEEEEeCCCH-HHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecC
Confidence 35677776422 23345566665543 45555543 223333 34469999999999999
Q ss_pred CCcccceee----CceEEEecC-CHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 61 GGPVETIKN----EVVGFLCNP-TPQEFSLSMAKLI---QEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 61 ~~~~e~i~~----~~~g~~~~~-~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
||+.|++.+ +.+|+++++ |+++++++|.+++ .+++.+.++++++ +.+.|||+.++++|.++|++++.
T Consensus 414 GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~---~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 414 GGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEA---MERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHHhc
Confidence 999998864 568999988 9999999999865 5787777777655 34789999999999999998864
No 54
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.62 E-value=3e-15 Score=109.45 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=69.9
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCc------eEEEecC-CHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcC
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEV------VGFLCNP-TPQEFSLSMAKLIQ---EPQMAKKMGENARHHVMESFS 113 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~------~g~~~~~-~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s 113 (134)
+..|||+||+|+|+++.||+.|++.++. +|+++++ |++++++++.+++. +++.+.++++++. .+.||
T Consensus 386 ~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~---~~~fs 462 (476)
T cd03791 386 TQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAM---AQDFS 462 (476)
T ss_pred HHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh---ccCCC
Confidence 4468999999999999999999999887 8999998 89999999999875 6677777777664 36799
Q ss_pred HHHHHHHHHHHHH
Q 043097 114 TKIFGQHLNRLLA 126 (134)
Q Consensus 114 ~~~~~~~~~~~~~ 126 (134)
|+.+++++.++|+
T Consensus 463 w~~~a~~~~~~y~ 475 (476)
T cd03791 463 WDRSAKEYLELYR 475 (476)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999986
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.60 E-value=1.8e-14 Score=101.09 Aligned_cols=77 Identities=31% Similarity=0.531 Sum_probs=72.6
Q ss_pred chhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 043097 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHL 121 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 121 (134)
..|||++|+|||+++.++..+++.++.+|++++. |+++++++|..++.++..+..+++++++.+.++|+|+.+++++
T Consensus 316 ~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 316 LFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 4799999999999999999999988788999988 8999999999999999999999999999998899999999876
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.60 E-value=1.5e-14 Score=100.84 Aligned_cols=108 Identities=26% Similarity=0.319 Sum_probs=88.6
Q ss_pred HHHHHHHcCCCCeEEeccc---------------------cccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEec
Q 043097 19 TFKKLHARGIHPVVLYPAV---------------------NVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCN 77 (134)
Q Consensus 19 ~~~~~~~~~~~~~v~~~g~---------------------~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~ 77 (134)
+.+.+...+..+.+.+.|. .......+.|||++|+|+|+++.++..+++.++.+|++++
T Consensus 248 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~ 327 (377)
T cd03798 248 LEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVP 327 (377)
T ss_pred HHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEEC
Confidence 4455555566666666664 2122225778999999999999999999999998899998
Q ss_pred C-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 78 P-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 78 ~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
. |++++++++.+++.++.. .+++++++.+.++|+|+.+.+++.++|+++
T Consensus 328 ~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 328 PGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred CCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8 899999999999998876 778888889999999999999999998763
No 57
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.59 E-value=3.1e-14 Score=99.68 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=86.1
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc---------------------cccccCCchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV---------------------NVYQFDKPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~---------------------~~~~~~~~~eAma~G~pvi~s~~~ 61 (134)
.++++++..... ......+...+..+.+.+.|. .......+.|||++|+|||+++.+
T Consensus 228 ~l~i~G~~~~~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 305 (365)
T cd03809 228 KLVIVGKRGWLN--EELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNIS 305 (365)
T ss_pred CEEEecCCcccc--HHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCC
Confidence 456666543221 122233345567777777775 111222567899999999999999
Q ss_pred CcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 62 GPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+..|++.+ .|+++.. |++++++++.+++.++..+..+++++++.+ ++|+|+++++++.
T Consensus 306 ~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~~~~~~~ 364 (365)
T cd03809 306 SLPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARA-KRFSWEKTARRTL 364 (365)
T ss_pred CccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence 99998854 4777777 899999999999999999999999999655 7899999998875
No 58
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.57 E-value=5.9e-14 Score=97.89 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=78.2
Q ss_pred CeEEecccc-ccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 30 PVVLYPAVN-VYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHH 107 (134)
Q Consensus 30 ~~v~~~g~~-~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 107 (134)
+.+++|+.. +.....++|||+||+|||+|+.++..+++.++.+|++++. |++++++++.++++++..+..+++++++.
T Consensus 264 d~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 264 DVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred CEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 555666543 3333368899999999999999999999998888999988 89999999999999999999999998876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 043097 108 VMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 108 ~~~~~s~~~~~~~~~~~~~ 126 (134)
.. .+.+.+++.++|+
T Consensus 344 ~~----~~~~~~~~~~~~~ 358 (359)
T cd03823 344 RS----IEDQAEEYLKLYR 358 (359)
T ss_pred hh----HHHHHHHHHHHhh
Confidence 53 2888888888885
No 59
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.56 E-value=1e-13 Score=96.95 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=86.7
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc---------------------cccccCCchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV---------------------NVYQFDKPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~---------------------~~~~~~~~~eAma~G~pvi~s~~~ 61 (134)
.+++++..... ..+.+.+.+.++.+.+.+.|. .........|||+||+|||+++.+
T Consensus 235 ~l~i~G~~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 235 KLVIVGDGPER---EELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred EEEEEeCCchH---HHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 35556544322 334555555566666776664 111122467899999999999999
Q ss_pred CcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 62 GPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
+..+++.++.+|++++. +. ++++++.++++++..+..|++++++.+.+ +. +.+++.++|++
T Consensus 312 ~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~ 373 (374)
T cd03817 312 GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEK-FS---FAKKVEKLYEE 373 (374)
T ss_pred ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH-HH---HHHHHHHHHhc
Confidence 99999999889999987 45 99999999999999999999999998854 44 55666666654
No 60
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.54 E-value=8.7e-14 Score=98.03 Aligned_cols=76 Identities=28% Similarity=0.403 Sum_probs=62.9
Q ss_pred cCCchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 42 FDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 42 ~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
...+.|||+||+|||+++.++..|++.++.+|+++++ |+++++++|..+++++. .++++.++.+ ++|+|+++.++
T Consensus 274 g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~~ 349 (351)
T cd03804 274 GIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHA-ERFSESRFREK 349 (351)
T ss_pred CchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHH-HhcCHHHHHHH
Confidence 3467899999999999999999999999889999987 89999999999999873 2333444445 57999998876
Q ss_pred H
Q 043097 121 L 121 (134)
Q Consensus 121 ~ 121 (134)
+
T Consensus 350 ~ 350 (351)
T cd03804 350 I 350 (351)
T ss_pred h
Confidence 5
No 61
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.54 E-value=2.3e-14 Score=91.55 Aligned_cols=64 Identities=39% Similarity=0.639 Sum_probs=59.1
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHH 107 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 107 (134)
.+.|||++|+|||+++.++..+++.++.+|+++++ ++++++++|.+++.+++.+..|+++++++
T Consensus 108 ~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 108 SLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 67789999999999999999999999999999988 89999999999999999999999999864
No 62
>PHA01633 putative glycosyl transferase group 1
Probab=99.53 E-value=1.3e-13 Score=96.66 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=66.7
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCcccceee------------------CceEEEecC-CHHHHHHHHHHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKN------------------EVVGFLCNP-TPQEFSLSMAKL 90 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~------------------~~~g~~~~~-~~~~l~~~i~~~ 90 (134)
+.+++|+..+.....++|||+||+|||+|++++++|+..+ ...|+.++. |+++++++|.++
T Consensus 225 DifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~ 304 (335)
T PHA01633 225 DFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILA 304 (335)
T ss_pred CEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHH
Confidence 4455555443334467789999999999999999997542 224667776 999999999998
Q ss_pred hcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 91 IQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
+... .+...+.++++.+ ++|+|+++.++|.+
T Consensus 305 ~~~~-~~~~~~~~~~~~a-~~f~~~~~~~~~~~ 335 (335)
T PHA01633 305 FELQ-DREERSMKLKELA-KKYDIRNLYTRFLE 335 (335)
T ss_pred Hhcc-ChhhhhHHHHHHH-HhcCHHHHHHHhhC
Confidence 5532 2333466777766 79999999998863
No 63
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.51 E-value=2.5e-13 Score=98.63 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=83.5
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc--------cccccC----------CchhhhhcCCCEEeccCCCcc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV--------NVYQFD----------KPHSSMAAYKPVIACDSGGPV 64 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~--------~~~~~~----------~~~eAma~G~pvi~s~~~~~~ 64 (134)
.++++|.+-.... +++.+.++++...+ |.|. ..|.|. +.+||||||+|||+++.++ .
T Consensus 261 ~l~ivGdGp~~~~---L~~~a~~l~l~~~v-f~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~ 335 (462)
T PLN02846 261 EVDLYGSGEDSDE---VKAAAEKLELDVRV-YPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N 335 (462)
T ss_pred EEEEECCCccHHH---HHHHHHhcCCcEEE-ECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-c
Confidence 4678887755444 67777777776444 6665 233333 4567999999999999997 5
Q ss_pred cceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 65 ETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 65 e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
+++.++.+|+.++ |.+++++++..++.++. ..++.++ .+.|||+..++++.++|+
T Consensus 336 ~~v~~~~ng~~~~-~~~~~a~ai~~~l~~~~--~~~~~~a----~~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 336 EFFKQFPNCRTYD-DGKGFVRATLKALAEEP--APLTDAQ----RHELSWEAATERFLRVAD 390 (462)
T ss_pred ceeecCCceEecC-CHHHHHHHHHHHHccCc--hhHHHHH----HHhCCHHHHHHHHHHHhc
Confidence 8998899998886 89999999999998542 2233332 258999999999999996
No 64
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.48 E-value=5.5e-13 Score=92.31 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=82.2
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-------------------cccccCCchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-------------------NVYQFDKPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-------------------~~~~~~~~~eAma~G~pvi~s~~~~~ 63 (134)
.+++++..... ....+.+..+++.+.+.+.|. .......+.|||++|+|||+|+.++.
T Consensus 222 ~l~i~G~~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~ 298 (353)
T cd03811 222 RLVILGDGPLR---EELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP 298 (353)
T ss_pred eEEEEcCCccH---HHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence 45566644333 334566666677777777764 11122256789999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHHhcC
Q 043097 64 VETIKNEVVGFLCNP-TPQEF---SLSMAKLIQEPQMAKKMGENARHHVMESFS 113 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s 113 (134)
.|++.++.+|++++. +++.+ .+.+..+..++..+..+++++++.+.++|+
T Consensus 299 ~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 299 REILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred HHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988 78888 777888888999999999988888877775
No 65
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.45 E-value=4.8e-13 Score=93.98 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=76.3
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------cccc----------CCchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQF----------DKPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~----------~~~~eAma~G~pvi~s~~~~~ 63 (134)
.++++|++-. ...+.+.+.+.++.+.+.+.|.. .+.+ ..+.|||++|+|||+|+.++.
T Consensus 225 ~l~ivG~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~ 301 (358)
T cd03812 225 KLLLVGDGEL---EEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK 301 (358)
T ss_pred EEEEEeCCch---HHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch
Confidence 4567765433 23466666677888888888851 2222 246689999999999999999
Q ss_pred ccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHV 108 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 108 (134)
.+++.++ .|++... ++++++++|.+++.++..+..++.++....
T Consensus 302 ~~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 302 EVDLTDL-VKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hhhhccC-ccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 9999885 4555554 689999999999999999888877766544
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.43 E-value=1.9e-12 Score=95.47 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=76.2
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCc----ccceeeC-ceEEEec-------C-CHHHHHHHHHHHhcCHHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGP----VETIKNE-VVGFLCN-------P-TPQEFSLSMAKLIQEPQM 96 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~----~e~i~~~-~~g~~~~-------~-~~~~l~~~i~~~~~~~~~ 96 (134)
+..+||+..+.....++|||+||+|+|+|+.+|+ +|++.++ ..|+++. . ++++++++|.+++.. ..
T Consensus 476 dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-~~ 554 (590)
T cd03793 476 HLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-SR 554 (590)
T ss_pred eEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-cH
Confidence 6677788777777789999999999999999988 5555444 3466554 2 488899999998854 45
Q ss_pred HHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 97 AKKMGENAR-HHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 97 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
++.+.++++ +...+.|+|+++...|.+.|.-.+.
T Consensus 555 r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 555 RQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 666666544 2344789999999999999987764
No 67
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.41 E-value=2.9e-12 Score=88.90 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=89.1
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC----------CchhhhhcCCCEEeccCC
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD----------KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~----------~~~eAma~G~pvi~s~~~ 61 (134)
.+++++.+..... +++...++.+++++.+.|. ..+.|. ...||++||+|||+|+.|
T Consensus 228 rfii~GDGPk~i~---lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVG 304 (426)
T KOG1111|consen 228 RFIIIGDGPKRID---LEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVG 304 (426)
T ss_pred eEEEecCCcccch---HHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 4677776665555 4555555678899999995 334444 345699999999999999
Q ss_pred CcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 62 GPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 62 ~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
|++|++.++ .-++.++++++++.++...+...... -....+.+.+.|+|+..+++.+++|.++.+.
T Consensus 305 GIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~---p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t 370 (426)
T KOG1111|consen 305 GIPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTL---PLEFHDRVKKMYSWKDVAERTEKVYDRAATT 370 (426)
T ss_pred CccccCCcc-ceeccCCChHHHHHHHHHHHHHhccC---chhHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999776 33444547888888888877532211 2334556788999999999999999988654
No 68
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.39 E-value=5.7e-12 Score=94.55 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEecccc---------ccccC----------CchhhhhcCCCEEeccCCCc
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVN---------VYQFD----------KPHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~---------~~~~~----------~~~eAma~G~pvi~s~~~~~ 63 (134)
.++++|.+-... ++.+.+.++++ .+.|.|.. .|.|. +.+||||||+|||+++.++.
T Consensus 579 rLvIVGDGP~re---eLe~la~eLgL--~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~ 653 (794)
T PLN02501 579 NLDVFGNGEDAH---EVQRAAKRLDL--NLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN 653 (794)
T ss_pred EEEEEcCCccHH---HHHHHHHHcCC--EEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC
Confidence 567888765433 46666666665 36666651 23333 45579999999999999985
Q ss_pred ccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043097 64 VETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLL 125 (134)
Q Consensus 64 ~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 125 (134)
+++.++.+|++.. |++++++++.+++.++..+..+++ ...|||+..++++.+.-
T Consensus 654 -e~V~~g~nGll~~-D~EafAeAI~~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 654 -EFFRSFPNCLTYK-TSEDFVAKVKEALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred -ceEeecCCeEecC-CHHHHHHHHHHHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 4576777777654 899999999999998875544332 24899999999998764
No 69
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.37 E-value=1.2e-11 Score=90.45 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=66.8
Q ss_pred cCCchhhhhcCCC----EEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHH
Q 043097 42 FDKPHSSMAAYKP----VIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQE-PQMAKKMGENARHHVMESFSTK 115 (134)
Q Consensus 42 ~~~~~eAma~G~p----vi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~~ 115 (134)
..++.|||+||+| +|+|+.+|..+. +.+|+++++ |+++++++|..++++ +..+..+++++++.+ ++|++.
T Consensus 374 ~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v-~~~~~~ 449 (460)
T cd03788 374 NLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYV-RTHDVQ 449 (460)
T ss_pred CcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHH
Confidence 3367789999999 999988887776 356899988 999999999999984 478888888899887 689999
Q ss_pred HHHHHHHHH
Q 043097 116 IFGQHLNRL 124 (134)
Q Consensus 116 ~~~~~~~~~ 124 (134)
..++++..-
T Consensus 450 ~w~~~~l~~ 458 (460)
T cd03788 450 AWANSFLDD 458 (460)
T ss_pred HHHHHHHHh
Confidence 999888754
No 70
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.34 E-value=3.1e-11 Score=88.14 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=70.6
Q ss_pred cccccCCchhhhhcCCC----EEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh
Q 043097 38 NVYQFDKPHSSMAAYKP----VIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMES 111 (134)
Q Consensus 38 ~~~~~~~~~eAma~G~p----vi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 111 (134)
.+..-.++.|||+||+| +|+|+.+|..+.+. +|+++++ |+++++++|.++++ ++.++..+.+++++++ .+
T Consensus 365 ~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v-~~ 440 (456)
T TIGR02400 365 RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKL-RK 440 (456)
T ss_pred ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hh
Confidence 33334477899999999 99999888877774 5899988 99999999999998 6788888899999987 57
Q ss_pred cCHHHHHHHHHHHH
Q 043097 112 FSTKIFGQHLNRLL 125 (134)
Q Consensus 112 ~s~~~~~~~~~~~~ 125 (134)
||+...++.+.+-+
T Consensus 441 ~~~~~W~~~~l~~l 454 (456)
T TIGR02400 441 NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999887654
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.34 E-value=2.2e-11 Score=88.15 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCchhhhhcCCCEEeccC-CCcccceeeC-ceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 043097 43 DKPHSSMAAYKPVIACDS-GGPVETIKNE-VVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQ 119 (134)
Q Consensus 43 ~~~~eAma~G~pvi~s~~-~~~~e~i~~~-~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 119 (134)
..++|||+||+|||+++. ++..++.... .+|.++.. |++++++++..+++|++.+.+|++++++.+.++ ....+
T Consensus 335 ~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~ 411 (425)
T PRK05749 335 HNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QGALQ 411 (425)
T ss_pred CCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---ccHHH
Confidence 368899999999999865 4455654431 34666555 999999999999999999999999999988654 35667
Q ss_pred HHHHHHHHHhcC
Q 043097 120 HLNRLLAYVARG 131 (134)
Q Consensus 120 ~~~~~~~~~~~~ 131 (134)
++.+.+...+.+
T Consensus 412 ~~~~~l~~~l~~ 423 (425)
T PRK05749 412 RTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHhccc
Confidence 777777665543
No 72
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=4.3e-11 Score=82.31 Aligned_cols=87 Identities=31% Similarity=0.491 Sum_probs=75.0
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
...|||++|+|+|+++.++..+++.++..|+++.. +.++++.++..+++++..+..+++.+++.+.+.|+|+...+++.
T Consensus 292 ~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (381)
T COG0438 292 VLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLL 371 (381)
T ss_pred HHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999988766776666 69999999999999987788888766666768999999999999
Q ss_pred HHHHHHhc
Q 043097 123 RLLAYVAR 130 (134)
Q Consensus 123 ~~~~~~~~ 130 (134)
+++.....
T Consensus 372 ~~~~~~~~ 379 (381)
T COG0438 372 ELYEELLA 379 (381)
T ss_pred HHHHHHHh
Confidence 99987754
No 73
>PLN02275 transferase, transferring glycosyl groups
Probab=99.29 E-value=1.2e-11 Score=88.25 Aligned_cols=85 Identities=16% Similarity=0.070 Sum_probs=65.9
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc-----------cccccC-------------CchhhhhcCCCEEec
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV-----------NVYQFD-------------KPHSSMAAYKPVIAC 58 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~-----------~~~~~~-------------~~~eAma~G~pvi~s 58 (134)
.++++|.+-. .+++.+.+.++++++.+++.|. ..|.|. .+.||||||+|||++
T Consensus 263 ~l~ivG~G~~---~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 263 LFIITGKGPQ---KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred EEEEEeCCCC---HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 4677776543 3568888888899885555552 122221 366799999999999
Q ss_pred cCCCcccceeeCceEEEecCCHHHHHHHHHHHh
Q 043097 59 DSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLI 91 (134)
Q Consensus 59 ~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~ 91 (134)
+.++..|++.++.+|++++ ++++++++|.+++
T Consensus 340 ~~gg~~eiv~~g~~G~lv~-~~~~la~~i~~l~ 371 (371)
T PLN02275 340 SYSCIGELVKDGKNGLLFS-SSSELADQLLELL 371 (371)
T ss_pred cCCChHHHccCCCCeEEEC-CHHHHHHHHHHhC
Confidence 9999999999999999998 8999999998764
No 74
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.21 E-value=2.8e-10 Score=87.94 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred CeEEeccccccccCCchhhhhcCCC----EEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKP----VIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGEN 103 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~p----vi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~ 103 (134)
+..++++.....-..+.|||+||+| +|+|..+|..+.+ +..|+++++ |+++++++|.++++ ++.++....++
T Consensus 377 DvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~ 454 (797)
T PLN03063 377 DVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRH 454 (797)
T ss_pred CEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333344344445578899999999 9999999888876 335899998 99999999999999 88888888888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhc
Q 043097 104 ARHHVMESFSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~~~ 130 (134)
.++++ ++++|...++.+.+.++.+..
T Consensus 455 ~~~~v-~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 455 NFQYV-KTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHhh-hhCCHHHHHHHHHHHHHHHhh
Confidence 99888 689999999999998887653
No 75
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.20 E-value=3.1e-10 Score=84.03 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=70.3
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
...||+++|+|+| .-+..+++.++.+|+++. |..+|++++..++.++..+.++...+++.+ ++||-+++.++|.+
T Consensus 443 ~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li~-d~~~l~~al~~~L~~~~~wn~~~~~sy~~~-~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 443 TQISGISAGIPQI---NKVETDYVEHNKNGYIID-DISELLKALDYYLDNLKNWNYSLAYSIKLI-DDYSSENIIERLNE 517 (519)
T ss_pred HHHHHHHcCCCee---ecCCceeeEcCCCcEEeC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHh
Confidence 7788999999999 445679999999999996 999999999999999999999999999988 79999999999987
Q ss_pred HH
Q 043097 124 LL 125 (134)
Q Consensus 124 ~~ 125 (134)
++
T Consensus 518 ~~ 519 (519)
T TIGR03713 518 LI 519 (519)
T ss_pred hC
Confidence 53
No 76
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.16 E-value=2.6e-10 Score=80.73 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=67.4
Q ss_pred CchhhhhcCCCEEeccCCCc--------ccceeeCceEEEecC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGGP--------VETIKNEVVGFLCNP-T--PQEFSLSMAKLIQEPQMAKKMGENARHHVMESF 112 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~--------~e~i~~~~~g~~~~~-~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (134)
...|||++|+|+|+++.++. .+.+.+...|++++. | ++++++++.+++.+++.+..|++++++.. +.+
T Consensus 264 ~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~ 342 (357)
T PRK00726 264 TVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG-KPD 342 (357)
T ss_pred HHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC-CcC
Confidence 46689999999999876421 244656667988876 6 99999999999999999999999999876 688
Q ss_pred CHHHHHHHHHHHHH
Q 043097 113 STKIFGQHLNRLLA 126 (134)
Q Consensus 113 s~~~~~~~~~~~~~ 126 (134)
+.+.+.+.+.++.+
T Consensus 343 ~~~~~~~~~~~~~~ 356 (357)
T PRK00726 343 AAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888877653
No 77
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.13 E-value=1.8e-10 Score=81.07 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCCeEEeccc-------ccccc------CCchhhhhcCCCEEeccCCCc-------ccceeeCceEEEe
Q 043097 17 ANTFKKLHARGIHPVVLYPAV-------NVYQF------DKPHSSMAAYKPVIACDSGGP-------VETIKNEVVGFLC 76 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~-------~~~~~------~~~~eAma~G~pvi~s~~~~~-------~e~i~~~~~g~~~ 76 (134)
+++.+.+.++++.+.+.|... ..|.+ ..+.|||++|+|+|+++.++. .+++.++.+|+++
T Consensus 222 ~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~ 301 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVI 301 (348)
T ss_pred HHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEE
Confidence 456677777777777766642 12221 246699999999999987542 2467778889998
Q ss_pred cC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 043097 77 NP-T--PQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFG 118 (134)
Q Consensus 77 ~~-~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 118 (134)
+. | ++++++++.+++.|++.+.+|++++++++ +.+..++++
T Consensus 302 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~ 345 (348)
T TIGR01133 302 RQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA-KPDAAKRIA 345 (348)
T ss_pred ecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC-CccHHHHHH
Confidence 76 5 99999999999999999999999998766 344444443
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.12 E-value=7.4e-10 Score=79.35 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred CchhhhhcCCCEEeccC------CCcccceeeCceEEEecCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYKPVIACDS------GGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE-PQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~------~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
..+|||+||+|+|+++. +... .+.++..|+++. |++++++++.+++.+ ++.+..|++++++.. ...+.+.
T Consensus 294 ti~EAma~g~PvI~~~~~pgqe~gn~~-~i~~~g~g~~~~-~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~-~~~a~~~ 370 (382)
T PLN02605 294 TIAEALIRGLPIILNGYIPGQEEGNVP-YVVDNGFGAFSE-SPKEIARIVAEWFGDKSDELEAMSENALKLA-RPEAVFD 370 (382)
T ss_pred hHHHHHHcCCCEEEecCCCccchhhHH-HHHhCCceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCchHHH
Confidence 56899999999999984 3333 333444576653 999999999999998 999999999998876 4667777
Q ss_pred HHHHHHHH
Q 043097 117 FGQHLNRL 124 (134)
Q Consensus 117 ~~~~~~~~ 124 (134)
+++.+.+.
T Consensus 371 i~~~l~~~ 378 (382)
T PLN02605 371 IVHDLHEL 378 (382)
T ss_pred HHHHHHHH
Confidence 77666544
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.08 E-value=2.3e-09 Score=77.13 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CchhhhhcCCCEEeccCCCccc-----ceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVE-----TIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFG 118 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e-----~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 118 (134)
..+|||++|+|+|+++..+..| ++.+...|+... +++++++.+..+++|++.+.+|++++++.. +.++++.++
T Consensus 285 tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~-~~~s~~~i~ 362 (391)
T PRK13608 285 TISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD-TPEEAIKIVASLTNGNEQLTNMISTMEQDK-IKYATQTIC 362 (391)
T ss_pred HHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-CCCCHHHHH
Confidence 3579999999999986432223 233445566554 899999999999999999999999999876 579999999
Q ss_pred HHHHHHHHHHhc
Q 043097 119 QHLNRLLAYVAR 130 (134)
Q Consensus 119 ~~~~~~~~~~~~ 130 (134)
+.+.+++..+..
T Consensus 363 ~~l~~l~~~~~~ 374 (391)
T PRK13608 363 RDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHHhhhhhh
Confidence 999998876543
No 80
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.06 E-value=2.2e-09 Score=76.75 Aligned_cols=110 Identities=9% Similarity=-0.080 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCCCCeEEeccc---------cccccC------CchhhhhcCCCEEecc-CCCcc----cceeeCceEE
Q 043097 15 TFANTFKKLHARGIHPVVLYPAV---------NVYQFD------KPHSSMAAYKPVIACD-SGGPV----ETIKNEVVGF 74 (134)
Q Consensus 15 ~~~~~~~~~~~~~~~~~v~~~g~---------~~~~~~------~~~eAma~G~pvi~s~-~~~~~----e~i~~~~~g~ 74 (134)
..+.+.+.+...+ +.+.+.|+ ..|.+. ..+|||++|+|+|+++ .++.. +.+.+...++
T Consensus 243 ~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~ 320 (380)
T PRK13609 243 LKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAV 320 (380)
T ss_pred HHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEE
Confidence 3445555555443 56777775 222222 3569999999999986 44421 2333222334
Q ss_pred EecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 75 LCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 75 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.. .|++++++++.+++.+++.+.+|++++++.. +.++++.+++.+.+.+...
T Consensus 321 ~~-~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~-~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 321 VI-RDDEEVFAKTEALLQDDMKLLQMKEAMKSLY-LPEPADHIVDDILAENHVE 372 (380)
T ss_pred EE-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHhhhhh
Confidence 33 3899999999999999999999999988755 5689999999998887643
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.05 E-value=2.9e-09 Score=81.95 Aligned_cols=87 Identities=9% Similarity=0.111 Sum_probs=68.6
Q ss_pred ccccCCchhhhhcCC-----CEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHh
Q 043097 39 VYQFDKPHSSMAAYK-----PVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQE-PQMAKKMGENARHHVMES 111 (134)
Q Consensus 39 ~~~~~~~~eAma~G~-----pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 111 (134)
...-.++.|||+||+ ||++...|+..++. .|+++++ |+++++++|.++++. +..+....+++++++ ++
T Consensus 372 EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v-~~ 446 (726)
T PRK14501 372 DGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERL-RR 446 (726)
T ss_pred cccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hh
Confidence 333447788999955 56666667777764 3789998 999999999999985 355666667888887 68
Q ss_pred cCHHHHHHHHHHHHHHHhc
Q 043097 112 FSTKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 112 ~s~~~~~~~~~~~~~~~~~ 130 (134)
|||...++++.+.|+++..
T Consensus 447 ~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 447 YDVHKWASDFLDELREAAE 465 (726)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 82
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.02 E-value=1.4e-09 Score=76.59 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCCeEEecccc---------cccc------CCchhhhhcCCCEEeccCCC--------cccceeeCceE
Q 043097 17 ANTFKKLHARGIHPVVLYPAVN---------VYQF------DKPHSSMAAYKPVIACDSGG--------PVETIKNEVVG 73 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~~---------~~~~------~~~~eAma~G~pvi~s~~~~--------~~e~i~~~~~g 73 (134)
+++.+.+.++ .+.+.+.|.. .+.+ ..+.|||++|+|+|+++.++ ..+.+.+..+|
T Consensus 224 ~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g 301 (350)
T cd03785 224 EEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAA 301 (350)
T ss_pred HHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCE
Confidence 4455555543 3556777741 2222 24679999999999987654 12455556678
Q ss_pred EEecC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 043097 74 FLCNP---TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFG 118 (134)
Q Consensus 74 ~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 118 (134)
++++. |++++++++..++.+++.+..|++++++++ +.+.-++++
T Consensus 302 ~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~ 348 (350)
T cd03785 302 VLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA-RPDAAERIA 348 (350)
T ss_pred EEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 88875 699999999999999999999999998876 456665554
No 83
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.9e-08 Score=73.83 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=69.1
Q ss_pred CchhhhhcCCCEEeccCCCcccceee--------CceEEEecC-CHHHHHHHHHHHhc---CHHH-HHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKN--------EVVGFLCNP-TPQEFSLSMAKLIQ---EPQM-AKKMGENARHHVME 110 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~--------~~~g~~~~~-~~~~l~~~i~~~~~---~~~~-~~~~~~~~~~~~~~ 110 (134)
.-.+||..|+++|+..+||+.+.+.+ ..+|+.+.+ ++++++.+|++.+. ++.. ...+..++- ..
T Consensus 384 ~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m---~~ 460 (487)
T COG0297 384 TQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAM---GA 460 (487)
T ss_pred HHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc---cc
Confidence 33459999999999999999999875 468999988 99999999998776 4444 555555543 36
Q ss_pred hcCHHHHHHHHHHHHHHHhcC
Q 043097 111 SFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 111 ~~s~~~~~~~~~~~~~~~~~~ 131 (134)
.|+|+..+.+|.+.|+.++.+
T Consensus 461 d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 461 DFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred ccCchhHHHHHHHHHHHHhcc
Confidence 899999999999999998754
No 84
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.91 E-value=7.2e-08 Score=67.31 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=96.8
Q ss_pred cceEeecCccchhh---HHHHHHHHHHcCCCCeEEeccc---------------------cccccCCchhhhhcCCCEEe
Q 043097 2 ADVILVNSKFTATT---FANTFKKLHARGIHPVVLYPAV---------------------NVYQFDKPHSSMAAYKPVIA 57 (134)
Q Consensus 2 a~~v~~~s~~~~~~---~~~~~~~~~~~~~~~~v~~~g~---------------------~~~~~~~~~eAma~G~pvi~ 57 (134)
+.+++++|-=..+. .+.++.....+.++..|.|.-- +++..+...|+||+|+-+|+
T Consensus 306 iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~ 385 (465)
T KOG1387|consen 306 IKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIV 385 (465)
T ss_pred ceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEE
Confidence 45788887544333 3455666677778777766531 34445588899999999999
Q ss_pred ccCCCcc-ccee---eCceEEEecCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 58 CDSGGPV-ETIK---NEVVGFLCNPTPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 58 s~~~~~~-e~i~---~~~~g~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
.+.||+. +++. ...+|++.+ +.++.++++-++.. +++.+..|++++|..+ .+|+-..+.+.|.+.+..+++.
T Consensus 386 h~SgGP~lDIV~~~~G~~tGFla~-t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 386 HNSGGPLLDIVTPWDGETTGFLAP-TDEEYAEAILKIVKLNYDERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred eCCCCCceeeeeccCCccceeecC-ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhcc
Confidence 9887654 4443 245788876 78899999998888 7788999999999877 6999999999999999988765
No 85
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.90 E-value=1.8e-08 Score=72.04 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=53.6
Q ss_pred CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEP-QMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
...|||+||+|||+|+.+...+ ....+++...|+++++++|..++.++ ..+.. +.++ +.+.|||+..++++.
T Consensus 294 Kl~EylA~G~PVVat~~~~~~~---~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~-~~~~~sW~~~a~~~~ 366 (373)
T cd04950 294 KLFEYLAAGKPVVATPLPEVRR---YEDEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR-LAAQNSWDARAAEML 366 (373)
T ss_pred hHHHHhccCCCEEecCcHHHHh---hcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH-HHHHCCHHHHHHHHH
Confidence 3678999999999998765443 33335555548999999999976533 22222 2222 457899999999998
Q ss_pred HHHHH
Q 043097 123 RLLAY 127 (134)
Q Consensus 123 ~~~~~ 127 (134)
..+++
T Consensus 367 ~~l~~ 371 (373)
T cd04950 367 EALQE 371 (373)
T ss_pred HHHHh
Confidence 66543
No 86
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.90 E-value=5.3e-09 Score=73.71 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=59.5
Q ss_pred chhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
.+++||||+|||+++.++..+++.++.+|++++ +.+++.+.+..+ +++++.+|++++++.. +.+.-..+.++
T Consensus 253 ~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~-~~~el~~~l~~~--~~~~~~~m~~n~~~~~-~~~~~g~~~~~ 324 (333)
T PRK09814 253 LSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD-SLEELPEIIDNI--TEEEYQEMVENVKKIS-KLLRNGYFTKK 324 (333)
T ss_pred HHHHHHCCCCEEECCCccHHHHHHhCCceEEeC-CHHHHHHHHHhc--CHHHHHHHHHHHHHHH-HHHhcchhHHH
Confidence 445899999999999999999999999999998 788999999885 4677889999999877 45554444444
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.59 E-value=6.2e-08 Score=68.99 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=56.0
Q ss_pred chhhhhcCCCEEec-cCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 45 PHSSMAAYKPVIAC-DSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 45 ~~eAma~G~pvi~s-~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
..|||++|+|+|++ +.++.++++..+. +.+++.|++++++++..++.++..+.+|+++...+. +..+++++++.+.+
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~e~~~~g~-~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g-~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERPETVEAGT-NKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYG-DGEASERIVEELLN 363 (365)
T ss_pred HHHHHHcCCCEEECCCCCCChHHHhcCc-eEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCc-CchHHHHHHHHHHh
Confidence 57899999999996 6677888887664 556655999999999999999988888876552222 23444555544443
No 88
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.58 E-value=7.1e-07 Score=63.77 Aligned_cols=84 Identities=7% Similarity=0.005 Sum_probs=56.6
Q ss_pred CchhhhhcCCCEEec-----------------cCCCcccceeeCc--eEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIAC-----------------DSGGPVETIKNEV--VGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGEN 103 (134)
Q Consensus 44 ~~~eAma~G~pvi~s-----------------~~~~~~e~i~~~~--~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~ 103 (134)
.++|||++|+|+|++ +.+++.+++.++. .+++.+. |++.+++.+.+++.|++.++.|+++
T Consensus 272 ~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 351 (380)
T PRK00025 272 VTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEG 351 (380)
T ss_pred HHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456999999999987 3344456655442 3355555 8999999999999999999999998
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh
Q 043097 104 ARHHVMESFSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~~ 129 (134)
+.+... ... ....+++.+.+.+.+
T Consensus 352 ~~~~~~-~~~-~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 352 FTELHQ-QLR-CGADERAAQAVLELL 375 (380)
T ss_pred HHHHHH-HhC-CCHHHHHHHHHHHHh
Confidence 765443 222 223444444444443
No 89
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.1e-06 Score=61.59 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=62.8
Q ss_pred chhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ----EPQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
......||+||++-+...+.|++.++.+|+++. |.+++++.++.+++ +.....++.++.++. +...|+..-++
T Consensus 358 VVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~-Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~ 434 (444)
T KOG2941|consen 358 VVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE-DSEELAEQLQMLFKNFPDNADELNQLKKNLREE--QELRWDESWER 434 (444)
T ss_pred HHHhhcCCCceeeecchhHHHHHhcCCCceEec-cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH--HhhhHHHHHHH
Confidence 334899999999999999999999999999998 89999999999999 788889999998875 45666654444
Q ss_pred H
Q 043097 121 L 121 (134)
Q Consensus 121 ~ 121 (134)
.
T Consensus 435 ~ 435 (444)
T KOG2941|consen 435 T 435 (444)
T ss_pred h
Confidence 3
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.50 E-value=2e-06 Score=67.66 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=76.1
Q ss_pred CeEEeccccccccCCchhhhhcCC----CEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYK----PVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGEN 103 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~----pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~ 103 (134)
+..++++.....-..+.|||+|+. ++|.|..+|..+.+ +..++++.+ |+++++++|.++++ +++++..+.++
T Consensus 461 DV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~ 538 (934)
T PLN03064 461 DVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKRHRH 538 (934)
T ss_pred CEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444444444557889999954 55569888888777 334799999 99999999999998 89999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh
Q 043097 104 ARHHVMESFSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~~ 129 (134)
.++++ ..+++...++.+.+-+....
T Consensus 539 ~~~~V-~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 539 NFMHV-TTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHhhc-ccCCHHHHHHHHHHHHHHHH
Confidence 99988 58999999999887776653
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.46 E-value=1.9e-07 Score=57.25 Aligned_cols=64 Identities=31% Similarity=0.425 Sum_probs=39.6
Q ss_pred CCeEEeccc-cccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 29 HPVVLYPAV-NVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 29 ~~~v~~~g~-~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
.+.++.|.. +......+.|||++|+|+|+++. +..++......|.++..+++++++++.+++.|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 355666654 33233478899999999999998 46666655556777654999999999998764
No 92
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.32 E-value=1.2e-06 Score=65.42 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=67.4
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCcccceee-----CceEEEec-C---C----HHHHHHHHHHHhc-CHH
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKN-----EVVGFLCN-P---T----PQEFSLSMAKLIQ-EPQ 95 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~-----~~~g~~~~-~---~----~~~l~~~i~~~~~-~~~ 95 (134)
+..+||++.+-+.-.|+|+.++|+|.|+|+..|+...+.+ ...|+.+- . + ++++++.|..+.. ++.
T Consensus 471 dLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~r 550 (633)
T PF05693_consen 471 DLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQLSRR 550 (633)
T ss_dssp SEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HH
T ss_pred ceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHH
Confidence 3345555555555578899999999999999887765532 34465543 2 2 5666666666665 667
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Q 043097 96 MAKKMGENARHHVMESFSTKIFGQHLNRLLAYVARG 131 (134)
Q Consensus 96 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 131 (134)
++..+++++.+.. +.++|+++..-|.+.|.-.+++
T Consensus 551 qri~~Rn~ae~LS-~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 551 QRIIQRNRAERLS-DLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp HHHHHHHHHHHHG-GGGBHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHh
Confidence 7777777776655 7899999999999999876643
No 93
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.32 E-value=3.1e-05 Score=57.32 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=64.3
Q ss_pred CchhhhhcCC----CEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHH
Q 043097 44 KPHSSMAAYK----PVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQE-PQMAKKMGENARHHVMESFSTKIF 117 (134)
Q Consensus 44 ~~~eAma~G~----pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 117 (134)
++.|+++|+. |+|.|..+|..+.+. .++++.+ |+++++++|.+.++. +.++....++.++.+ ..++....
T Consensus 397 Va~Eyva~~~~~~GvLILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W 472 (487)
T TIGR02398 397 VAKEYVAAQGLLDGVLVLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRW 472 (487)
T ss_pred chhhHHhhhcCCCCCEEEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHH
Confidence 6779999988 999999998887663 3689999 999999999999994 456666667777777 68899988
Q ss_pred HHHHHHHHH
Q 043097 118 GQHLNRLLA 126 (134)
Q Consensus 118 ~~~~~~~~~ 126 (134)
++.+..-+.
T Consensus 473 ~~~fl~~l~ 481 (487)
T TIGR02398 473 ADEFLAAVS 481 (487)
T ss_pred HHHHHHHhh
Confidence 888776554
No 94
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.28 E-value=9.4e-07 Score=57.92 Aligned_cols=47 Identities=32% Similarity=0.408 Sum_probs=35.3
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEe
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLC 76 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~ 76 (134)
+.+++++........+.|||++|+|+|+|+.++..|++.++.+|+++
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 33444443333334677899999999999999999999888888864
No 95
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=7.4e-06 Score=57.90 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=73.3
Q ss_pred chhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043097 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRL 124 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 124 (134)
..|+++||.|.|++.+.+...++.++.. +++..|..++.+.++.++..++.++++++.+++.+...|+.+.-..++.+.
T Consensus 280 vFeiagc~~~liT~~~~~~e~~f~pgk~-~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~ 358 (373)
T COG4641 280 VFEIAGCGGFLITDYWKDLEKFFKPGKD-IIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNE 358 (373)
T ss_pred HHHHhhcCCccccccHHHHHHhcCCchh-eEEecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHH
Confidence 4579999999999999999999988874 333349999999999999999999999999999999999999999888888
Q ss_pred HHHHh
Q 043097 125 LAYVA 129 (134)
Q Consensus 125 ~~~~~ 129 (134)
..++.
T Consensus 359 i~sI~ 363 (373)
T COG4641 359 IASIN 363 (373)
T ss_pred HHHHH
Confidence 77653
No 96
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.20 E-value=1.6e-05 Score=58.20 Aligned_cols=86 Identities=12% Similarity=0.204 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCCeEEecccc----------ccccC----------CchhhhhcCCCEEeccCC-CcccceeeCceEEE
Q 043097 17 ANTFKKLHARGIHPVVLYPAVN----------VYQFD----------KPHSSMAAYKPVIACDSG-GPVETIKNEVVGFL 75 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~~----------~~~~~----------~~~eAma~G~pvi~s~~~-~~~e~i~~~~~g~~ 75 (134)
.++.++ .++ .+.++|+|.. ++.+. ...||++.|+|+++.+.. +..+++.+ |.+
T Consensus 319 ~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l 392 (438)
T TIGR02919 319 SKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENI 392 (438)
T ss_pred HHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---Cce
Confidence 445555 443 7889999952 22222 455799999999999876 55566655 567
Q ss_pred ecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 76 CNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHV 108 (134)
Q Consensus 76 ~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 108 (134)
++. ++++++++|..+++++......-...++.+
T Consensus 393 ~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 393 FEHNEVDQLISKLKDLLNDPNQFRELLEQQREHA 426 (438)
T ss_pred ecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 777 899999999999999977666544444433
No 97
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.13 E-value=9.1e-06 Score=57.65 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCC-CCeEEeccc-----------cccccC-----CchhhhhcCCCEEeccC-CCcccceeeCceEEEecC
Q 043097 17 ANTFKKLHARGI-HPVVLYPAV-----------NVYQFD-----KPHSSMAAYKPVIACDS-GGPVETIKNEVVGFLCNP 78 (134)
Q Consensus 17 ~~~~~~~~~~~~-~~~v~~~g~-----------~~~~~~-----~~~eAma~G~pvi~s~~-~~~~e~i~~~~~g~~~~~ 78 (134)
..+.+.+.+++. .+.+.|.|. ..+.+. ...|||++|+|+|+++. +..++.+.++. +..+..
T Consensus 244 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sggi~~Ea~~~g~PvI~~~~~~~~~~~~~~g~-~~~~~~ 322 (363)
T cd03786 244 PRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEASFLGVPVLNLRDRTERPETVESGT-NVLVGT 322 (363)
T ss_pred HHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCccHHhhhhhcCCCEEeeCCCCccchhhheee-EEecCC
Confidence 445555555554 455666653 133332 35589999999999965 44556665553 344433
Q ss_pred CHHHHHHHHHHHhcCHHHHHHH
Q 043097 79 TPQEFSLSMAKLIQEPQMAKKM 100 (134)
Q Consensus 79 ~~~~l~~~i~~~~~~~~~~~~~ 100 (134)
+++++++++..++.++..+..|
T Consensus 323 ~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 323 DPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred CHHHHHHHHHHHhcCchhhhcC
Confidence 6999999999999988776665
No 98
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.05 E-value=0.00012 Score=55.65 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=61.5
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEec------------C-CHHHHHHHHHHHh-----cC-----HHHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCN------------P-TPQEFSLSMAKLI-----QE-----PQMAKKMGENA 104 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~------------~-~~~~l~~~i~~~~-----~~-----~~~~~~~~~~~ 104 (134)
||..|.+.+++--|...|.. ++.+|+.+. . |+++|.++|++.+ .+ |..+..|.+++
T Consensus 499 a~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~a 577 (601)
T TIGR02094 499 AAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKES 577 (601)
T ss_pred HHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHH
Confidence 99999999999777777766 566899987 3 8999999997755 23 55678888887
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 043097 105 RHHVMESFSTKIFGQHLNRLL 125 (134)
Q Consensus 105 ~~~~~~~~s~~~~~~~~~~~~ 125 (134)
.......|||++++++|.+.|
T Consensus 578 m~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 578 IATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HhccCCCCCHHHHHHHHHHHh
Confidence 665445799999999999876
No 99
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.73 E-value=0.00039 Score=51.26 Aligned_cols=115 Identities=14% Similarity=0.265 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHcCCC-CeEEecccc---------------ccccC-----CchhhhhcCCCEEeccCCCccc-----ce
Q 043097 14 TTFANTFKKLHARGIH-PVVLYPAVN---------------VYQFD-----KPHSSMAAYKPVIACDSGGPVE-----TI 67 (134)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~v~~~g~~---------------~~~~~-----~~~eAma~G~pvi~s~~~~~~e-----~i 67 (134)
...+.+.+...+.|+. ++++|.+.. .|.|+ ...||+.+|+|||+-.-..... ++
T Consensus 325 ~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL 404 (468)
T PF13844_consen 325 SGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL 404 (468)
T ss_dssp THHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH
Confidence 3346677778888887 667777641 11122 4667999999999954332222 11
Q ss_pred ee-CceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHh
Q 043097 68 KN-EVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMES--FSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 68 ~~-~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~ 129 (134)
.. |-..+++. |.+++.+...++..|++.+..++++.++...+. |+-..+++.+++.|+.++
T Consensus 405 ~~lGl~ElIA~-s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 405 RALGLPELIAD-SEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp HHHT-GGGB-S-SHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred HHcCCchhcCC-CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 11 11123343 899999999999999999999999988776433 999999999999998764
No 100
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.34 E-value=0.0075 Score=44.91 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=58.1
Q ss_pred cCCchhhhhcCCC----EEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHH
Q 043097 42 FDKPHSSMAAYKP----VIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTK 115 (134)
Q Consensus 42 ~~~~~eAma~G~p----vi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ 115 (134)
=..+.|+.+|..+ +|.|...|..+.+.++ .+++.| |+++++++|...++ .++++....++.++.+ ..++..
T Consensus 386 NLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~--al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v-~~~~~~ 462 (474)
T PF00982_consen 386 NLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA--ALLVNPWDIEEVADAIHEALTMPPEERKERHARLREYV-REHDVQ 462 (474)
T ss_dssp -HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS---EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHH-HHT-HH
T ss_pred CCcceEEEEEecCCCCceEeeccCCHHHHcCCc--cEEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-HhCCHH
Confidence 3356677777665 7788888888888544 478888 99999999999999 6677777777788877 688988
Q ss_pred HHHHHHHHHHH
Q 043097 116 IFGQHLNRLLA 126 (134)
Q Consensus 116 ~~~~~~~~~~~ 126 (134)
..++.+.+-++
T Consensus 463 ~W~~~~l~~L~ 473 (474)
T PF00982_consen 463 WWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 88888776553
No 101
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.0025 Score=46.17 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=52.0
Q ss_pred CchhhhhcCCCEEeccC----CCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDS----GGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVME 110 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~----~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 110 (134)
.|+|+.++|+|+|.-.. ....+-+.+...++.++ |.+.+...+..+.+|+..+.+|++++.+.+.+
T Consensus 334 N~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~-~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 334 NPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE-DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred ChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC-CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 68999999999998433 33333344455578887 68899999999999999999999999988764
No 102
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.19 E-value=0.025 Score=42.11 Aligned_cols=82 Identities=9% Similarity=0.116 Sum_probs=66.0
Q ss_pred CchhhhhcCC-----CEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYK-----PVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 44 ~~~eAma~G~-----pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
++.|+.+|.. ++|.|...|..+.+. + .+++.+ |.++++++|.+.++ .++++....+..++.+ ..++...
T Consensus 367 VAkEyva~q~~~~~GvLILSefAGaA~~L~-~--AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v-~~~dv~~ 442 (474)
T PRK10117 367 VAKEYVAAQDPANPGVLVLSQFAGAANELT-S--ALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVI-VKNDINH 442 (474)
T ss_pred ccchheeeecCCCCccEEEecccchHHHhC-C--CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhCCHHH
Confidence 5667888865 378898888877774 2 588888 99999999999999 6677777777788877 6889999
Q ss_pred HHHHHHHHHHHHh
Q 043097 117 FGQHLNRLLAYVA 129 (134)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (134)
.++.+..-+..+.
T Consensus 443 W~~~fL~~L~~~~ 455 (474)
T PRK10117 443 WQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHHhh
Confidence 9999888777654
No 103
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=96.89 E-value=0.019 Score=45.23 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=60.6
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEecC-------------CHHHHHHHHHHHhc----C------HHHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNP-------------TPQEFSLSMAKLIQ----E------PQMAKKMGENA 104 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~~-------------~~~~l~~~i~~~~~----~------~~~~~~~~~~~ 104 (134)
||..|.+-+++--|-..|.. ++.+|+.+.. ++++|.+.+++.+- + |..+.+|.+++
T Consensus 588 A~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~s 666 (778)
T cd04299 588 AALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHS 666 (778)
T ss_pred HHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 99999999999887777776 6778998854 36777777765333 2 67788999998
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 043097 105 RHHVMESFSTKIFGQHLNRLL 125 (134)
Q Consensus 105 ~~~~~~~~s~~~~~~~~~~~~ 125 (134)
...+...|||.++++.|.+-|
T Consensus 667 m~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 667 MATLGPRFSAERMVREYVERF 687 (778)
T ss_pred HHhcccCCCHHHHHHHHHHHh
Confidence 887777999999999996544
No 104
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=96.86 E-value=0.0038 Score=45.04 Aligned_cols=80 Identities=14% Similarity=0.258 Sum_probs=51.1
Q ss_pred CchhhhhcCCCEEeccCCCccc----ceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVE----TIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e----~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
+..||+++|+|+|+....+-.. .+.+...|..... +++++++++++++.++..++.+.+ .++.+...-..+.
T Consensus 303 t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~-l~~~~~~~~~~~~ 381 (392)
T TIGR01426 303 STMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRK-MRAEIREAGGARR 381 (392)
T ss_pred HHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHcCCHHH
Confidence 4667999999999975543222 2333345655543 589999999999999876555433 3333444556665
Q ss_pred HHHHHHHH
Q 043097 117 FGQHLNRL 124 (134)
Q Consensus 117 ~~~~~~~~ 124 (134)
.++.+.++
T Consensus 382 aa~~i~~~ 389 (392)
T TIGR01426 382 AADEIEGF 389 (392)
T ss_pred HHHHHHHh
Confidence 55555544
No 105
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.53 E-value=0.032 Score=40.48 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=42.1
Q ss_pred chhhhhcCCCEEec-cCCCcc----------------cceeeCceEE-Ee-cC-CHHHHHHHHHHHhcCH----HHHHHH
Q 043097 45 PHSSMAAYKPVIAC-DSGGPV----------------ETIKNEVVGF-LC-NP-TPQEFSLSMAKLIQEP----QMAKKM 100 (134)
Q Consensus 45 ~~eAma~G~pvi~s-~~~~~~----------------e~i~~~~~g~-~~-~~-~~~~l~~~i~~~~~~~----~~~~~~ 100 (134)
.+|+|++|+|+|+. ..+.+. .++.+..... +. .. +++.+++.+.+++.|+ +.+.++
T Consensus 279 tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~ 358 (385)
T TIGR00215 279 ALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRE 358 (385)
T ss_pred HHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45999999999886 222221 2222221111 11 22 6899999999999999 888777
Q ss_pred HHHHHHHHHHhcC
Q 043097 101 GENARHHVMESFS 113 (134)
Q Consensus 101 ~~~~~~~~~~~~s 113 (134)
.+...+ +.+...
T Consensus 359 ~~~~~~-~~~~l~ 370 (385)
T TIGR00215 359 RQFFEE-LRQRIY 370 (385)
T ss_pred HHHHHH-HHHHhc
Confidence 665554 334443
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=96.50 E-value=0.0091 Score=43.46 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=47.1
Q ss_pred CchhhhhcCCCEEeccCCCcc---cceee-----CceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPV---ETIKN-----EVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTK 115 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~---e~i~~-----~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 115 (134)
...|++++|+|+|.....+.. .+... +....+.+.+++.+++.+..++.|++.+..|.+++++...+....+
T Consensus 307 ~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~ 386 (396)
T TIGR03492 307 ATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASA 386 (396)
T ss_pred HHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHH
Confidence 356899999999998643221 12222 2222233337899999999999999888888754443332233344
Q ss_pred HHHH
Q 043097 116 IFGQ 119 (134)
Q Consensus 116 ~~~~ 119 (134)
.+++
T Consensus 387 ~ia~ 390 (396)
T TIGR03492 387 RIAE 390 (396)
T ss_pred HHHH
Confidence 4443
No 107
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.47 E-value=0.065 Score=42.87 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=54.9
Q ss_pred CEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 54 PVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 54 pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+|.|...|....+. + .+.+.| |+++++++|.+.++ .+.++....++.++++ ..++....++.+..-++..
T Consensus 480 vLiLSEfaGaa~~L~-~--Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 480 MLVVSEFIGCSPSLS-G--AIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERT 552 (854)
T ss_pred ceEeeeccchhHHhC-c--CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHH
Confidence 367788777666663 2 588888 99999999999999 5566666667777777 6889999888887776654
No 108
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.17 E-value=0.087 Score=38.09 Aligned_cols=77 Identities=10% Similarity=0.197 Sum_probs=55.7
Q ss_pred chhhhhcCCCEEeccC-CCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 45 PHSSMAAYKPVIACDS-GGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~-~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
--||-..|+||++-+. .--+|.+..+ +-.++..+.+.+.+.+..++++++.+++|+.. ...|.-.+..+++.+
T Consensus 293 qEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~~-----~npYgdg~as~rIv~ 366 (383)
T COG0381 293 QEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGTDEENILDAATELLEDEEFYERMSNA-----KNPYGDGNASERIVE 366 (383)
T ss_pred hhhHHhcCCcEEeeccCCCCccceecC-ceEEeCccHHHHHHHHHHHhhChHHHHHHhcc-----cCCCcCcchHHHHHH
Confidence 3469999999999644 4556666555 35666668999999999999999888887653 245666666666666
Q ss_pred HHHH
Q 043097 124 LLAY 127 (134)
Q Consensus 124 ~~~~ 127 (134)
++.+
T Consensus 367 ~l~~ 370 (383)
T COG0381 367 ILLN 370 (383)
T ss_pred HHHH
Confidence 6553
No 109
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.16 E-value=0.032 Score=42.02 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKKMGENA 104 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~ 104 (134)
+..||+.+|+|+|+-+..+ ....+.....|...+. +.+++.+++++++.++..++...+-+
T Consensus 376 s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls 443 (507)
T PHA03392 376 STDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELR 443 (507)
T ss_pred cHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4557999999999975542 2222333445766654 68999999999999977665544433
No 110
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.03 E-value=0.035 Score=40.61 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=54.6
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeCceEEEec--C-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNEVVGFLCN--P-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~~~g~~~~--~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
+..||+.+|+|+|+-..+. .-+-+++-..|.... . +++.++++++++++++..++...+ .++...+.-..++
T Consensus 312 tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~-~~~~~~~~~g~~~ 390 (406)
T COG1819 312 TTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAER-LAEEFKEEDGPAK 390 (406)
T ss_pred hHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHH-HHHHhhhcccHHH
Confidence 4566999999999965542 223345556777666 3 799999999999999877665443 4444545556555
Q ss_pred HHHHHHHHHH
Q 043097 117 FGQHLNRLLA 126 (134)
Q Consensus 117 ~~~~~~~~~~ 126 (134)
.++.++++..
T Consensus 391 ~a~~le~~~~ 400 (406)
T COG1819 391 AADLLEEFAR 400 (406)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 111
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.037 Score=39.80 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=49.8
Q ss_pred CchhhhhcCCCEEeccCCCc---c-----cceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGP---V-----ETIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKKMGENARHHV 108 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~---~-----e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 108 (134)
.+.|..++|+|+|.-+.+.. . ..+.+...+.+++. +++.+.+.+..++++++....|.+++++..
T Consensus 264 Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 264 TIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 46679999999999766533 1 23444555777665 489999999999999999999999887644
No 112
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.23 Score=37.20 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 52 YKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 52 G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
+-|.|.|...|....+.+ .+++.+ |.++++++|.+.++ .++++++.-+..++.+ ..++....+..+.+-+..
T Consensus 406 ~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v-~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 406 PGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQV-LTHDVARWANSFLDDLAQ 479 (486)
T ss_pred CCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHh
Confidence 457888888877777754 588888 99999999999999 6677777667777767 578888888887766654
No 113
>PLN02670 transferase, transferring glycosyl groups
Probab=95.54 E-value=0.077 Score=39.66 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=49.8
Q ss_pred CchhhhhcCCCEEeccCC----CcccceeeCceEEEec------C-CHHHHHHHHHHHhcCHHHHHHHHHHHHHH---HH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETIKNEVVGFLCN------P-TPQEFSLSMAKLIQEPQMAKKMGENARHH---VM 109 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i~~~~~g~~~~------~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~ 109 (134)
+..||+++|+|+|+-+.. .+...+.....|+.+. . +.+++.+++++++.+++ -..+++++++. +.
T Consensus 369 S~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~ 447 (472)
T PLN02670 369 SVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFG 447 (472)
T ss_pred hHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHh
Confidence 688999999999996543 2222333345566553 1 58999999999997642 12333444433 33
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 043097 110 ESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 110 ~~~s~~~~~~~~~~~~~~ 127 (134)
..=+....++.+.+.+.+
T Consensus 448 ~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 448 DMDRNNRYVDELVHYLRE 465 (472)
T ss_pred CcchhHHHHHHHHHHHHH
Confidence 334445555555555444
No 114
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.49 E-value=0.031 Score=40.26 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=46.8
Q ss_pred hhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043097 46 HSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRL 124 (134)
Q Consensus 46 ~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 124 (134)
.||.++|+|+|+- +.-+|.+..+.+.+.+..+++++.+++.+++ ++..+..+ ......|...+..+++.++
T Consensus 294 ~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~-~~~~~~~~-----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 294 IEAPSFGVPTINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEKLL-DPAFKKSL-----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred HhhhhcCCCEEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHHHh-ChHHHHHH-----hhCCCCCCCChHHHHHHHh
Confidence 5799999999954 4466777667777767669999999999854 44332222 1122346666666666553
No 115
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.30 E-value=0.0087 Score=44.59 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=37.6
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~ 99 (134)
+..||+.+|+|+|+-+.-+ +...+.+...|...+. +.+++.++|++++.|+..++.
T Consensus 353 s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~ 415 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKEN 415 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHH
T ss_pred hhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHH
Confidence 5668999999999975532 2223444455776654 689999999999999865444
No 116
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=95.23 E-value=0.28 Score=33.73 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=57.8
Q ss_pred hhhcCCCEEeccCC---CcccceeeCceEEEecCCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSG---GPVETIKNEVVGFLCNPTP--QEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 48 Ama~G~pvi~s~~~---~~~e~i~~~~~g~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
-|+|+-.|+..... -..+.+.+..+-+-+..|- +++.++|..+.++++..+++++++++++.+..+.+.+..-+.
T Consensus 164 ~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~Y~~ 243 (256)
T smart00672 164 ILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDYMF 243 (256)
T ss_pred HHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 78888888776421 2223344444434344343 349999999999999999999999999998899998887776
Q ss_pred HHHHH
Q 043097 123 RLLAY 127 (134)
Q Consensus 123 ~~~~~ 127 (134)
.++.+
T Consensus 244 ~ll~e 248 (256)
T smart00672 244 HLLQE 248 (256)
T ss_pred HHHHH
Confidence 66643
No 117
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.12 Score=39.25 Aligned_cols=125 Identities=10% Similarity=0.110 Sum_probs=77.3
Q ss_pred EeecCccchhhHHHHHHHHHHcCCC-CeEEeccc--------------------cccccCCchhhhhcCCCEEec-----
Q 043097 5 ILVNSKFTATTFANTFKKLHARGIH-PVVLYPAV--------------------NVYQFDKPHSSMAAYKPVIAC----- 58 (134)
Q Consensus 5 v~~~s~~~~~~~~~~~~~~~~~~~~-~~v~~~g~--------------------~~~~~~~~~eAma~G~pvi~s----- 58 (134)
++.+.+-.+.+.+.+.....+.|+. +++.|.+. ....-...+||+-+|+|||+-
T Consensus 463 ~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~F 542 (620)
T COG3914 463 LLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQF 542 (620)
T ss_pred EEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeeccHHH
Confidence 3334434555666666666666664 34455443 112222678999999999983
Q ss_pred --cCCCcccceee-CceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHhcCC
Q 043097 59 --DSGGPVETIKN-EVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVME--SFSTKIFGQHLNRLLAYVARGK 132 (134)
Q Consensus 59 --~~~~~~e~i~~-~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~ 132 (134)
+.++ .++.+ |..-+++. +.+++.+.-..+-+|...+.+.+....+.... -|+.+.+++++..+|..+.+..
T Consensus 543 asR~~~--si~~~agi~e~vA~-s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~y 618 (620)
T COG3914 543 ASRNGA--SIATNAGIPELVAD-SRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSEY 618 (620)
T ss_pred HHhhhH--HHHHhcCCchhhcC-CHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHhh
Confidence 3332 12221 22234444 67777777778887887776665544433322 4999999999999999987653
No 118
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.16 E-value=0.084 Score=39.23 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=40.3
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeC-ceEEEecC--CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNE-VVGFLCNP--TPQEFSLSMAKLIQEPQMAKKMGENARH 106 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~-~~g~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 106 (134)
+..||+++|+|+|+-+..+ +...+.+. ..|+-+.. +.+++++++++++.+++ -+.+.+++++
T Consensus 354 S~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~-~~~~r~~a~~ 422 (451)
T PLN02410 354 STLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEE-GEEMRKRAIS 422 (451)
T ss_pred HHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCc-HHHHHHHHHH
Confidence 6789999999999965432 22223222 45665533 78999999999998753 2344444443
No 119
>PLN02208 glycosyltransferase family protein
Probab=94.82 E-value=0.095 Score=38.85 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=40.8
Q ss_pred CchhhhhcCCCEEeccCCC----cccceee-CceEEEec------CCHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKN-EVVGFLCN------PTPQEFSLSMAKLIQEP-QMAKKMGENARH 106 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~-~~~g~~~~------~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~ 106 (134)
+.+||+++|+|+|+-+..+ +...+.+ -..|+... .+.+++.+++++++.++ +..+++.+++.+
T Consensus 341 S~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 341 TIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred HHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 6889999999999964432 2222222 33455552 26789999999999765 344555555544
No 120
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=94.81 E-value=0.23 Score=36.28 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=59.5
Q ss_pred hhhcCCCEEeccCC---CcccceeeCceEEEecC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSG---GPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 48 Ama~G~pvi~s~~~---~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
-|+||-.|+..+.. -..+.+.+..+-+-+.. +-.++.++|+.+.++++..++++++|++++.+.++.+.+..-+.
T Consensus 233 lL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~ 312 (395)
T PF05686_consen 233 LLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWR 312 (395)
T ss_pred HHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 68899888875322 22233445555555555 68999999999999999999999999999999999888876665
Q ss_pred HHHH
Q 043097 123 RLLA 126 (134)
Q Consensus 123 ~~~~ 126 (134)
.++.
T Consensus 313 ~LL~ 316 (395)
T PF05686_consen 313 RLLL 316 (395)
T ss_pred HHHH
Confidence 5554
No 121
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=94.65 E-value=0.18 Score=37.85 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.3
Q ss_pred CchhhhhcCCCEEeccCCC----cccce-eeCceEEEec----C-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETI-KNEVVGFLCN----P-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i-~~~~~g~~~~----~-~~~~l~~~i~~~~~~~ 94 (134)
+..||+.+|+|+|+-+..+ +...+ ..-..|+..+ . +.+++.+++.+++.++
T Consensus 368 S~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 368 STLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 6889999999999965432 22233 2333465552 2 6899999999999753
No 122
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=94.44 E-value=0.12 Score=37.38 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=35.7
Q ss_pred CchhhhhcCCCEEeccCCCc----ccceeeCceEEEecC---CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSGGP----VETIKNEVVGFLCNP---TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~----~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~ 94 (134)
+..||+++|+|+|+.+..+- ...+.....|..... +++++.+++++++.++
T Consensus 316 t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 316 TTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred hHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 46679999999999866542 223333445655543 5899999999999754
No 123
>PLN02210 UDP-glucosyl transferase
Probab=94.30 E-value=0.21 Score=37.17 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=35.6
Q ss_pred CchhhhhcCCCEEeccCCC----cccceee-CceEEEec------C-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKN-EVVGFLCN------P-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~-~~~g~~~~------~-~~~~l~~~i~~~~~~~ 94 (134)
+..||+.+|+|+|+-+..+ +...+.+ -..|+.+. . +.+++.+++++++.++
T Consensus 354 S~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 354 STIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred cHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 6789999999999965432 2223333 34565552 2 6899999999999764
No 124
>PLN02562 UDP-glycosyltransferase
Probab=94.03 E-value=0.29 Score=36.42 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=38.5
Q ss_pred CchhhhhcCCCEEeccCC----Ccccceee-CceEEEecC-CHHHHHHHHHHHhcCHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETIKN-EVVGFLCNP-TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i~~-~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~ 99 (134)
+..||+.+|+|+|+-+.. .+...+.+ -..|+-+.. +.+++++++++++.++..+..
T Consensus 358 S~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 358 STMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred hHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 577899999999986543 22233332 234555544 789999999999988654433
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=93.76 E-value=0.16 Score=36.41 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=44.2
Q ss_pred hhhhcCCCEEec-cCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043097 47 SSMAAYKPVIAC-DSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLL 125 (134)
Q Consensus 47 eAma~G~pvi~s-~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 125 (134)
||.++|+|+|.- +.+.-++....+. ..+++.+++++.+++.+++.++..+..+.. ....|.-.+..+++.+++
T Consensus 272 Ea~~lg~P~v~iR~~geRqe~r~~~~-nvlv~~~~~~I~~ai~~~l~~~~~~~~~~~-----~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 272 EAPSLGKPVVNIRDSGERQEGRERGS-NVLVGTDPEAIIQAIEKALSDKDFYRKLKN-----RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp HGGGGT--EEECSSS-S-HHHHHTTS-EEEETSSHHHHHHHHHHHHH-HHHHHHHHC-----S--TT-SS-HHHHHHHHH
T ss_pred HHHHhCCeEEEecCCCCCHHHHhhcc-eEEeCCCHHHHHHHHHHHHhChHHHHhhcc-----CCCCCCCCcHHHHHHHhh
Confidence 899999999997 4455555555554 445777999999999999987544443321 123566666667766655
No 126
>PLN03004 UDP-glycosyltransferase
Probab=93.67 E-value=0.2 Score=37.28 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=37.0
Q ss_pred CchhhhhcCCCEEeccC----CCccccee-eCceEEEec-----C-CHHHHHHHHHHHhcCHHH
Q 043097 44 KPHSSMAAYKPVIACDS----GGPVETIK-NEVVGFLCN-----P-TPQEFSLSMAKLIQEPQM 96 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~----~~~~e~i~-~~~~g~~~~-----~-~~~~l~~~i~~~~~~~~~ 96 (134)
+..||+++|+|+|+-+. ..+...+. .-..|+..+ . +.+++++++++++.++..
T Consensus 364 S~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~ 427 (451)
T PLN03004 364 SILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPV 427 (451)
T ss_pred HHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHH
Confidence 68899999999999643 33333343 224565553 2 689999999999987543
No 127
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.19 Score=37.34 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=58.2
Q ss_pred EEeccccccccCCchhhhhcCCCEEeccCCCcccceee-----CceEEEe-c------C-CHHHHHHHHHHHhcCHHHHH
Q 043097 32 VLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKN-----EVVGFLC-N------P-TPQEFSLSMAKLIQEPQMAK 98 (134)
Q Consensus 32 v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~-----~~~g~~~-~------~-~~~~l~~~i~~~~~~~~~~~ 98 (134)
-+||++.+.+.-.|.|---+|.|.|+|+..|+.-++++ ...|+.+ + . +.+++++-|..+... ..|.
T Consensus 504 GVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F~~q-sRRQ 582 (692)
T KOG3742|consen 504 GVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEFCKQ-SRRQ 582 (692)
T ss_pred cccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHHHHH-HHHH
Confidence 34555555556678889999999999998877655432 2345443 2 1 367777777666542 3333
Q ss_pred HHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 99 KMG-ENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 99 ~~~-~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
++- ++--++...-.+|..+..-|.+.=.
T Consensus 583 RIiqRNrtErLSdLLDWk~lG~~Y~~aR~ 611 (692)
T KOG3742|consen 583 RIIQRNRTERLSDLLDWKYLGRYYRKARH 611 (692)
T ss_pred HHHHhcchhhHHHHHhHHHHhHHHHHHHH
Confidence 333 3333445566889988877765543
No 128
>PLN00414 glycosyltransferase family protein
Probab=93.27 E-value=0.5 Score=35.18 Aligned_cols=64 Identities=5% Similarity=0.018 Sum_probs=42.1
Q ss_pred CchhhhhcCCCEEeccCC----Ccccce-eeCceEEEec-----C-CHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETI-KNEVVGFLCN-----P-TPQEFSLSMAKLIQEP-QMAKKMGENARHH 107 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i-~~~~~g~~~~-----~-~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~ 107 (134)
+..||+.+|+|+|+-+.. .+...+ ..-..|+... . +.+++.+++++++.++ +..+++.+++++.
T Consensus 342 S~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 342 SMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 688999999999996543 222233 2334565552 2 6899999999999764 3455555555543
No 129
>PLN02448 UDP-glycosyltransferase family protein
Probab=93.23 E-value=0.42 Score=35.62 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=39.0
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeC-ceEEEec-------C-CHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNE-VVGFLCN-------P-TPQEFSLSMAKLIQEP-QMAKKMGENARH 106 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~-~~g~~~~-------~-~~~~l~~~i~~~~~~~-~~~~~~~~~~~~ 106 (134)
+..||+++|+|+|+-+..+ +...+.+. ..|+-+. . +.+++++++++++.++ +.-+.|++++.+
T Consensus 353 S~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 353 STLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred HHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5678999999999965432 22223221 2344431 2 6899999999999864 333444444443
No 130
>PLN02554 UDP-glycosyltransferase family protein
Probab=93.15 E-value=0.63 Score=34.95 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=34.6
Q ss_pred CchhhhhcCCCEEeccCC----Ccc-cceeeCceEEEec-------------C-CHHHHHHHHHHHhc-CHH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPV-ETIKNEVVGFLCN-------------P-TPQEFSLSMAKLIQ-EPQ 95 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~-e~i~~~~~g~~~~-------------~-~~~~l~~~i~~~~~-~~~ 95 (134)
+..||+.+|+|+|+-+.. .+. ..+..-..|+.++ . +.+++.+++++++. ++.
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~ 443 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD 443 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH
Confidence 688999999999996543 222 1233323454431 2 68999999999996 543
No 131
>PLN03007 UDP-glucosyltransferase family protein
Probab=93.00 E-value=0.81 Score=34.40 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=32.5
Q ss_pred CchhhhhcCCCEEeccCCC----cccceee-CceEEEe----------cC-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKN-EVVGFLC----------NP-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~-~~~g~~~----------~~-~~~~l~~~i~~~~~~~ 94 (134)
+..||+.+|+|+|+-+..+ +...+.+ -..|+-+ +. +.+++.+++++++.++
T Consensus 375 S~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 375 SLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred HHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 6778999999999965432 2111111 1122221 12 6899999999999875
No 132
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.74 E-value=0.51 Score=35.25 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=33.2
Q ss_pred CchhhhhcCCCEEeccCC----CcccceeeC-ceEEEec-----C-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETIKNE-VVGFLCN-----P-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i~~~-~~g~~~~-----~-~~~~l~~~i~~~~~~~ 94 (134)
+..||+.+|+|+|+-+.. .+...+.+. ..|+-.. . +.+++++++++++.++
T Consensus 357 S~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 357 SSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence 688999999999996443 222222221 1233331 2 5899999999999754
No 133
>PLN02167 UDP-glycosyltransferase family protein
Probab=92.62 E-value=1.1 Score=33.75 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=33.9
Q ss_pred CchhhhhcCCCEEeccCC----Cccc-ceeeCceEEEec---------C-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVE-TIKNEVVGFLCN---------P-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e-~i~~~~~g~~~~---------~-~~~~l~~~i~~~~~~~ 94 (134)
+..||+++|+|+|+-+.. .+.. ++..-..|+.+. . +.+++++++++++.+.
T Consensus 370 S~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 370 SVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred cHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 688899999999996433 2221 133333455431 2 6899999999999753
No 134
>PLN02764 glycosyltransferase family protein
Probab=92.35 E-value=0.83 Score=34.14 Aligned_cols=85 Identities=6% Similarity=0.031 Sum_probs=48.9
Q ss_pred CchhhhhcCCCEEeccCCC----cccce-eeCceEEEec-----C-CHHHHHHHHHHHhcCH-HHHHHHHHHHHH---HH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETI-KNEVVGFLCN-----P-TPQEFSLSMAKLIQEP-QMAKKMGENARH---HV 108 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i-~~~~~g~~~~-----~-~~~~l~~~i~~~~~~~-~~~~~~~~~~~~---~~ 108 (134)
+..||+.+|+|+|+-+..+ +...+ ..-..|+-.. . +.+++.+++++++.++ +..+++.+++.+ .+
T Consensus 347 S~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~ 426 (453)
T PLN02764 347 SMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL 426 (453)
T ss_pred HHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 6789999999999965432 22233 2223454431 2 6899999999999764 334445444443 23
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 043097 109 MESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 109 ~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+.=|-.+..+++.+.+.+.
T Consensus 427 ~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 427 ASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HhcCCHHHHHHHHHHHHHHh
Confidence 22233334444444444443
No 135
>PLN00164 glucosyltransferase; Provisional
Probab=91.71 E-value=1.2 Score=33.56 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=39.9
Q ss_pred CchhhhhcCCCEEeccCC----Ccccce-eeCceEEEec-------C-CHHHHHHHHHHHhcCHH-HHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETI-KNEVVGFLCN-------P-TPQEFSLSMAKLIQEPQ-MAKKMGENARH 106 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i-~~~~~g~~~~-------~-~~~~l~~~i~~~~~~~~-~~~~~~~~~~~ 106 (134)
+..||+++|+|+|+-+.. .+...+ ..-..|+... . +.+++.+++++++.++. +.+.+.+++.+
T Consensus 369 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 369 SVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred hHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 688999999999996432 222223 2234565542 1 57999999999997643 24444444444
No 136
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=91.70 E-value=1.1 Score=34.21 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=50.4
Q ss_pred cCCchhhhhcCCCEEeccCCCcc-----c--------------------ceeeCceEEEecC-CHHHHHHHHHHHhcCHH
Q 043097 42 FDKPHSSMAAYKPVIACDSGGPV-----E--------------------TIKNEVVGFLCNP-TPQEFSLSMAKLIQEPQ 95 (134)
Q Consensus 42 ~~~~~eAma~G~pvi~s~~~~~~-----e--------------------~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~~ 95 (134)
.+.|+||+++|+|-|-......+ + .|+. -.-+.++. |.+++.++|++++..+.
T Consensus 354 gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~-PhVytVd~~n~~~v~~Avk~il~~~v 432 (559)
T PF15024_consen 354 GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGE-PHVYTVDINNSTEVEAAVKAILATPV 432 (559)
T ss_pred CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCC-CeEEEEcCCCHHHHHHHHHHHHhcCC
Confidence 66899999999999876432111 1 1221 22345566 89999999999998652
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 96 MAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 96 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
. . ++--.|+-+.+.+++..++++
T Consensus 433 ~--P-------y~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 433 E--P-------YLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred C--C-------cCCcccCHHHHHHHHHHHHHh
Confidence 1 1 233468888888888766654
No 137
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=91.57 E-value=0.52 Score=33.87 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=36.5
Q ss_pred chhhhhcCCCEEeccCCC----ccc-----ceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHH
Q 043097 45 PHSSMAAYKPVIACDSGG----PVE-----TIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAK 98 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~----~~e-----~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~ 98 (134)
..|++++|+|.|.-+... ..+ .+.+...+..... +++.+.+.+..++.|++.+.
T Consensus 265 ~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 265 IFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 456999999999986531 122 2333434555433 58999999999998876653
No 138
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=91.43 E-value=0.017 Score=36.71 Aligned_cols=60 Identities=18% Similarity=0.370 Sum_probs=36.1
Q ss_pred CchhhhhcCCCEEeccCCCc--------ccceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGP--------VETIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKKMGEN 103 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~--------~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~ 103 (134)
...|++++|+|.|.-+.... ...+.+...+..... +++.|.+.+..++.++..+..+.++
T Consensus 84 Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 84 TIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp HHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred HHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 46789999999988766551 112222223333332 4788999999999998876666554
No 139
>PLN02173 UDP-glucosyl transferase family protein
Probab=91.13 E-value=1.1 Score=33.55 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=38.6
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeC-ceEEEec------C-CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNE-VVGFLCN------P-TPQEFSLSMAKLIQEPQMAKKMGENARH 106 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~-~~g~~~~------~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 106 (134)
+..||+++|+|+|+-+..+ +...+.+. ..|+-+. . +.+++.+++++++.+++ .+++.+++.+
T Consensus 347 S~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~~~r~~a~~ 420 (449)
T PLN02173 347 STMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SKEMKENAGK 420 (449)
T ss_pred hHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 6889999999999965432 22233321 3454432 1 57999999999997642 2344444443
No 140
>PLN02207 UDP-glycosyltransferase
Probab=90.87 E-value=1.6 Score=32.76 Aligned_cols=49 Identities=6% Similarity=-0.034 Sum_probs=32.3
Q ss_pred CchhhhhcCCCEEeccCCC----cccceee-CceEEEe---------cC-CHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKN-EVVGFLC---------NP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~-~~~g~~~---------~~-~~~~l~~~i~~~~~ 92 (134)
+..||+.+|+|+|+-+..+ +...+.+ -..|+-+ .. +.+++.+++++++.
T Consensus 362 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 362 SIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 6789999999999965432 2222222 2344422 12 67899999999996
No 141
>PLN02555 limonoid glucosyltransferase
Probab=90.80 E-value=1.2 Score=33.58 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=39.7
Q ss_pred CchhhhhcCCCEEeccCCC----cccceeeC-ceEEEe------c-C-CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETIKNE-VVGFLC------N-P-TPQEFSLSMAKLIQEPQMAKKMGENARHH 107 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i~~~-~~g~~~------~-~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 107 (134)
+..||+.+|+|+|+.+..+ +...+.+. ..|+-. . . +.+++..++++++.++ +-+++++++++.
T Consensus 367 S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l 442 (480)
T PLN02555 367 STMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKW 442 (480)
T ss_pred hHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHH
Confidence 5778999999999965432 22223232 456554 1 1 5889999999999753 234455555443
No 142
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=89.68 E-value=3.9 Score=30.87 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=31.9
Q ss_pred CchhhhhcCCCEEeccCC----Ccccce-eeCceEEEec-----C-CHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSG----GPVETI-KNEVVGFLCN-----P-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~----~~~e~i-~~~~~g~~~~-----~-~~~~l~~~i~~~~~ 92 (134)
+..||+++|+|+|+-+.. .+...+ +.-..|+-.. . +.+++.+++++++.
T Consensus 373 S~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 373 SVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS 432 (477)
T ss_pred HHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 677899999999996433 222222 2224565441 2 57889999988773
No 143
>PLN03015 UDP-glucosyl transferase
Probab=85.46 E-value=3.9 Score=30.83 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=32.5
Q ss_pred CchhhhhcCCCEEeccCCC----cccce-eeCceEEEec------C-CHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGG----PVETI-KNEVVGFLCN------P-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~----~~e~i-~~~~~g~~~~------~-~~~~l~~~i~~~~~ 92 (134)
+..||+++|+|+|+-+..+ +...+ ..-..|+-.. . +.+++.+++++++.
T Consensus 365 S~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 365 SVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred hHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 7889999999999965432 11222 2223444442 2 68899999999995
No 144
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.20 E-value=4.8 Score=28.68 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=43.0
Q ss_pred hhhcCCCEEec-cCCCcccceeeCceEEEecC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 48 SMAAYKPVIAC-DSGGPVETIKNEVVGFLCNP---TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 48 Ama~G~pvi~s-~~~~~~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
.+..|+||+.+ +++...++.+.+- .++++. |...+.+ ..+++...-++.+ .|+-++..+.|.+
T Consensus 246 Li~~G~~v~l~r~n~fwqdl~e~gv-~Vlf~~d~L~~~~v~e----------~~rql~~~dk~~I--~Ff~pn~~~~W~~ 312 (322)
T PRK02797 246 LIQLGKPVVLSRDNPFWQDLTEQGL-PVLFTGDDLDEDIVRE----------AQRQLASVDKNII--AFFSPNYLQGWRN 312 (322)
T ss_pred HHHCCCcEEEecCCchHHHHHhCCC-eEEecCCcccHHHHHH----------HHHHHHhhCccee--eecCHhHHHHHHH
Confidence 89999999887 4555555554443 443433 2333322 1222333333334 2999999999999
Q ss_pred HHHHHhcC
Q 043097 124 LLAYVARG 131 (134)
Q Consensus 124 ~~~~~~~~ 131 (134)
+|+.....
T Consensus 313 ~l~~~~g~ 320 (322)
T PRK02797 313 ALAIAAGE 320 (322)
T ss_pred HHHHhhCC
Confidence 99876543
No 145
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.25 E-value=6.4 Score=31.04 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred cchhhHHHHHHHHHHcCCC-CeEEecccc---------------ccccC-----CchhhhhcCCCEEec-------cCCC
Q 043097 11 FTATTFANTFKKLHARGIH-PVVLYPAVN---------------VYQFD-----KPHSSMAAYKPVIAC-------DSGG 62 (134)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~v~~~g~~---------------~~~~~-----~~~eAma~G~pvi~s-------~~~~ 62 (134)
|....-+.++..+.++|++ ++|+|.... .|.+. ...+.+-+|+|+|+- ++++
T Consensus 796 fPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~ 875 (966)
T KOG4626|consen 796 FPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAA 875 (966)
T ss_pred ccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHH
Confidence 3333336777888888875 566666641 11111 234588999999873 2221
Q ss_pred cccceeeCceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHhcCCC
Q 043097 63 PVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVM--ESFSTKIFGQHLNRLLAYVARGKE 133 (134)
Q Consensus 63 ~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~ 133 (134)
. .+..-..|-++-.+.+++.+.-.++-+|.+.+..+....|..-. .-|+-..++..+++.|..++++.+
T Consensus 876 S--ll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~ 946 (966)
T KOG4626|consen 876 S--LLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYC 946 (966)
T ss_pred H--HHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhc
Confidence 1 11111123233337888888888999999988888777665422 338999999999999999887543
No 146
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=82.97 E-value=8.5 Score=28.66 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=31.7
Q ss_pred hhhcCCCEEeccCC----CcccceeeCceEEEe--cC-CHHHHHHHHHHHhcCHHHHHH
Q 043097 48 SMAAYKPVIACDSG----GPVETIKNEVVGFLC--NP-TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 48 Ama~G~pvi~s~~~----~~~e~i~~~~~g~~~--~~-~~~~l~~~i~~~~~~~~~~~~ 99 (134)
|++.|+|+|+-... ++-+.+.-.. +.. .. +.+++.+.+.+++.+.+...+
T Consensus 342 a~~~gvP~i~i~Y~~K~~~~~~~lg~~~--~~~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 342 SMNFGTPAIAINYEHKSAGIMQQLGLPE--MAIDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred HHHcCCCEEEeeehHHHHHHHHHcCCcc--EEechhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 99999999985332 2222232221 222 22 678999999999988765444
No 147
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=82.32 E-value=21 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=28.8
Q ss_pred hhhcCCCEEeccCCCccccee--eCceEEEecCCH
Q 043097 48 SMAAYKPVIACDSGGPVETIK--NEVVGFLCNPTP 80 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~--~~~~g~~~~~~~ 80 (134)
++..|.+.|+|--|...|+.+ ++.+|+++..+.
T Consensus 598 ~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 598 AALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred HHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 999999999999999999886 788999997643
No 148
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=81.99 E-value=3.4 Score=29.71 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=30.4
Q ss_pred CchhhhhcCCCEEec--cCC-------CcccceeeCceEEEecCCHHHHHHHHHHHhcCHHHH
Q 043097 44 KPHSSMAAYKPVIAC--DSG-------GPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEPQMA 97 (134)
Q Consensus 44 ~~~eAma~G~pvi~s--~~~-------~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~~~~ 97 (134)
...|++.+++|||.. |.. ...+ ..+...|.++. +.++|.+.|+.++.++...
T Consensus 280 i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~-~~~eL~~~i~~~~~~~~~~ 340 (369)
T PF04464_consen 280 IIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY-NFEELIEAIENIIENPDEY 340 (369)
T ss_dssp HHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES-SHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC-CHHHHHHHHHhhhhCCHHH
Confidence 355699999999964 331 1112 22233455555 7899999999888765443
No 149
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=81.16 E-value=1.2 Score=31.04 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.1
Q ss_pred CchhhhhcCCCEEeccCCCccc------ceeeCceEEEecC---CHHHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP---TPQEFSLSMAK 89 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~---~~~~l~~~i~~ 89 (134)
...|++++|+|+|+-+..+..| .+.....|...+. +++.+.+.|++
T Consensus 262 t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 262 TISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 4677999999999987754333 2333444555442 57888877765
No 150
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=78.76 E-value=1.9 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=29.0
Q ss_pred CchhhhhcCCCEEeccCCCccc------ceeeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
+..||+++|+|+|..+..+..| .+.+...|...+. +. ++.+.+...++
T Consensus 259 t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 259 LISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRN 313 (321)
T ss_pred HHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhccc
Confidence 4567999999999988765333 2434445666654 44 44444444333
No 151
>PLN02534 UDP-glycosyltransferase
Probab=77.45 E-value=21 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=30.1
Q ss_pred CchhhhhcCCCEEeccCCCccc----ce-eeCceEEEe--------------c-C-CHHHHHHHHHHHhc
Q 043097 44 KPHSSMAAYKPVIACDSGGPVE----TI-KNEVVGFLC--------------N-P-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~~~e----~i-~~~~~g~~~--------------~-~-~~~~l~~~i~~~~~ 92 (134)
+..||+.+|+|+|+-+..+-.. .+ +.-..|+-+ . . +.+++++++++++.
T Consensus 374 s~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 374 STIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred HHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 6778999999999965432111 11 111112211 0 1 57899999999985
No 152
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=77.21 E-value=14 Score=26.15 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCCeEEeccccccccCCchhhhhcCCC--EEe-ccCCCcccceee-----CceEEEecC-CHHHHHHHHHHHhc--CHH
Q 043097 27 GIHPVVLYPAVNVYQFDKPHSSMAAYKP--VIA-CDSGGPVETIKN-----EVVGFLCNP-TPQEFSLSMAKLIQ--EPQ 95 (134)
Q Consensus 27 ~~~~~v~~~g~~~~~~~~~~eAma~G~p--vi~-s~~~~~~e~i~~-----~~~g~~~~~-~~~~l~~~i~~~~~--~~~ 95 (134)
.-.+.+++.|...+.|..-....+-+.+ +|. ++.-.....-.. .....+.++ +...+++.|...+. +|+
T Consensus 80 ~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~L~~~dP~ 159 (303)
T COG0803 80 RKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADALVELDPE 159 (303)
T ss_pred HhCCEEEEcCCChHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHHhCcc
Confidence 3446777777665554433334444444 222 222122222211 123455555 66667777766666 888
Q ss_pred HHHHHHHHHHHHHH
Q 043097 96 MAKKMGENARHHVM 109 (134)
Q Consensus 96 ~~~~~~~~~~~~~~ 109 (134)
....+.+|+.++..
T Consensus 160 ~~~~y~~N~~~y~~ 173 (303)
T COG0803 160 NKETYEKNAEAYLK 173 (303)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888887765
No 153
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.63 E-value=15 Score=26.45 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=39.5
Q ss_pred hhhcCCCEEeccCCCcccc---eee-----CceEEEecCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVET---IKN-----EVVGFLCNPTPQEFSLSMAKLIQEPQMAKKMGENARHHVME 110 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~---i~~-----~~~g~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 110 (134)
+...|+|||..+..|..-. -+. +..-.++.+.++.-....+.++.|++....+..++++++-+
T Consensus 326 avGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 326 AVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred hhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 8889999999866544321 100 22123344344444444455999999999888888877643
No 154
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=75.57 E-value=19 Score=26.44 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=37.9
Q ss_pred CchhhhhcCCCEEec-cCCC----------------cccceeeCceEEEe----cC-CHHHHHHHHHHHhcCHHHHHHHH
Q 043097 44 KPHSSMAAYKPVIAC-DSGG----------------PVETIKNEVVGFLC----NP-TPQEFSLSMAKLIQEPQMAKKMG 101 (134)
Q Consensus 44 ~~~eAma~G~pvi~s-~~~~----------------~~e~i~~~~~g~~~----~~-~~~~l~~~i~~~~~~~~~~~~~~ 101 (134)
..+|++.+|+|.|++ .... ++.++-+.. ++- +. .++.++.++..++.|...+.++.
T Consensus 275 ~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~--ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~ 352 (381)
T COG0763 275 ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGRE--IVPELIQEDCTPENLARALEELLLNGDRREALK 352 (381)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCc--cchHHHhhhcCHHHHHHHHHHHhcChHhHHHHH
Confidence 467899999999884 3222 222332211 111 11 49999999999999986666665
Q ss_pred HHHH
Q 043097 102 ENAR 105 (134)
Q Consensus 102 ~~~~ 105 (134)
+.-.
T Consensus 353 ~~~~ 356 (381)
T COG0763 353 EKFR 356 (381)
T ss_pred HHHH
Confidence 5443
No 155
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=75.48 E-value=3.8 Score=29.57 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=35.8
Q ss_pred hhhcCCCEEecc--CCCcccceeeCceEEEecC--CHHHHHHHHHHHhcCHHHHHH
Q 043097 48 SMAAYKPVIACD--SGGPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 48 Ama~G~pvi~s~--~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~~~~~~~~ 99 (134)
|+..|+-+|+-. .+...+++.++. -+-++. ++++|++.|+.+.+|+....+
T Consensus 250 al~~g~VPI~~G~~~~~~~~~~P~~S-fI~~~df~s~~~La~yl~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 250 ALLAGTVPIYWGPPRPNYEEFAPPNS-FIHVDDFKSPKELADYLKYLDKNDELYNK 304 (349)
T ss_dssp HHHTTSEEEEES---TTHHHHS-GGG-SEEGGGSSSHHHHHHHHHHHHT-HHHHH-
T ss_pred HHHCCeEEEEECCEecccccCCCCCC-ccchhcCCCHHHHHHHHHHHhcCHHHHhh
Confidence 999999888876 667777776643 333433 799999999999998876544
No 156
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=75.17 E-value=18 Score=24.90 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=52.0
Q ss_pred HHcCCCCeEEeccccccccC-CchhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc--CHHHHHH
Q 043097 24 HARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ--EPQMAKK 99 (134)
Q Consensus 24 ~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~--~~~~~~~ 99 (134)
..+.-.+.+++.|...+.+. .+.+.+ -+.+++....++..+ -...+..++.++ +...+++.|...+. +|.....
T Consensus 48 ~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~~~~~ 125 (264)
T cd01020 48 AKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDD-KEGDNPHLWYDPETMSKVANALADALVKADPDNKKY 125 (264)
T ss_pred HHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccC-CCCCCCceecCHhHHHHHHHHHHHHHHHhCcccHHH
Confidence 33344577888876554332 222222 344555543332111 011123355555 67777777777776 7888888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 100 MGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 100 ~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
..+|+.++..+ ++..-+.+.+.+.
T Consensus 126 y~~N~~~~~~~---l~~l~~~~~~~~~ 149 (264)
T cd01020 126 YQANAKKFVAS---LKPLAAKIAELSA 149 (264)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 88887776642 3444444444443
No 157
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=74.98 E-value=16 Score=27.29 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=34.3
Q ss_pred CchhhhhcCCCEEeccC----CCcccce-eeCceEEEecC--CHHHHHHHHHHHhcCHHHHHH
Q 043097 44 KPHSSMAAYKPVIACDS----GGPVETI-KNEVVGFLCNP--TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~----~~~~e~i-~~~~~g~~~~~--~~~~l~~~i~~~~~~~~~~~~ 99 (134)
+..|++.+|+|+|+.+. ..+...+ ..+..++.... ....+.+++..++.++.....
T Consensus 366 St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~ 428 (496)
T KOG1192|consen 366 STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEEYKEA 428 (496)
T ss_pred HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHH
Confidence 67899999999996432 2223333 34444444433 233478888888877655443
No 158
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=70.84 E-value=18 Score=21.04 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=20.4
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccc
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQ 41 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 41 (134)
|.+|++.++......+++.-...-. --+.++|.|...+.
T Consensus 36 aKliiiAsN~P~~~k~~ieyYAkLs-~ipV~~y~Gt~~eL 74 (100)
T COG1911 36 AKLIIIASNCPKELKEDIEYYAKLS-DIPVYVYEGTSVEL 74 (100)
T ss_pred CcEEEEecCCCHHHHHHHHHHHHHc-CCcEEEecCCceeH
Confidence 4566777776666655555443222 22445555555444
No 159
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=70.13 E-value=41 Score=24.73 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=35.3
Q ss_pred CchhhhhcCCCEEec-cCC----------------CcccceeeCc-eE-EEecC-CHHHHHHHHHHHhcCHHHHHHH
Q 043097 44 KPHSSMAAYKPVIAC-DSG----------------GPVETIKNEV-VG-FLCNP-TPQEFSLSMAKLIQEPQMAKKM 100 (134)
Q Consensus 44 ~~~eAma~G~pvi~s-~~~----------------~~~e~i~~~~-~g-~~~~~-~~~~l~~~i~~~~~~~~~~~~~ 100 (134)
..+|++.+|+|.|+. ..+ ++..++-+.. .. ++-+. +++.+++.+..++.|+..+...
T Consensus 271 aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~ 347 (373)
T PF02684_consen 271 ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQ 347 (373)
T ss_pred HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 577899999999773 322 2222322211 00 11123 6999999999999998775443
No 160
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=69.25 E-value=39 Score=25.57 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=38.3
Q ss_pred CchhhhhcCC-CEEeccCC--CcccceeeCceEEEecCCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcCHH
Q 043097 44 KPHSSMAAYK-PVIACDSG--GPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFSTK 115 (134)
Q Consensus 44 ~~~eAma~G~-pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ 115 (134)
...||+..|| |||.+|.- ...++++-..-+++++ .+++.+.+.+.+. ...+...|.++....+.++|-+.
T Consensus 359 R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~--~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 359 RLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP--EKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred hHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE--HHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 4556999998 77777653 4445554455555554 3444444344444 23444555555554455555444
No 161
>PLN02929 NADH kinase
Probab=67.84 E-value=21 Score=25.37 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=31.7
Q ss_pred hhcCCCEEeccCCCc---------ccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 49 MAAYKPVIACDSGGP---------VETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 49 ma~G~pvi~s~~~~~---------~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
+..++||+.-+.|.. .++=..+..|+++..+++++.+.+.+++..
T Consensus 84 ~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 84 LDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFG 137 (301)
T ss_pred cCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcC
Confidence 366899999877631 111112357999888889999999998874
No 162
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=66.39 E-value=14 Score=25.59 Aligned_cols=59 Identities=14% Similarity=-0.031 Sum_probs=33.0
Q ss_pred CCeEEeccccccccCCchhhhhcCCC-EEeccCC--CcccceeeCceEEEecC-CHHHHHHHH
Q 043097 29 HPVVLYPAVNVYQFDKPHSSMAAYKP-VIACDSG--GPVETIKNEVVGFLCNP-TPQEFSLSM 87 (134)
Q Consensus 29 ~~~v~~~g~~~~~~~~~~eAma~G~p-vi~s~~~--~~~e~i~~~~~g~~~~~-~~~~l~~~i 87 (134)
+..++.|..+.-.-....|||.+||- ||.++.- ...+++.-....+.++. +..++.+.+
T Consensus 237 S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 237 SKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred CeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 34444443343344568899999984 5555432 45566755665666654 444444433
No 163
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=65.91 E-value=32 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=29.2
Q ss_pred chhhhhcCCCEEeccCC---CcccceeeCceEEEecC-CHHHHHHHHHHHh
Q 043097 45 PHSSMAAYKPVIACDSG---GPVETIKNEVVGFLCNP-TPQEFSLSMAKLI 91 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~ 91 (134)
..||...|+|+|.+-.+ +..+.+.+ .|++... |++++.+.+....
T Consensus 260 a~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 260 AREAALLGTPAISCFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHhCCCEEEecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhh
Confidence 44699999999986432 33344423 2666665 8998888665543
No 164
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=62.16 E-value=44 Score=22.25 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=28.5
Q ss_pred cCccchhhHHHHHHHHHHcCCCCeEEeccccccccCCchhhhhcCCCEEeccCC
Q 043097 8 NSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 8 ~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~ 61 (134)
.+.+......+..+.+...+.+-.++.+..........-++...|.|||..+.+
T Consensus 36 ~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 36 DAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 444444433344444434454333333333333333455688899999998776
No 165
>PRK14986 glycogen phosphorylase; Provisional
Probab=61.99 E-value=20 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=32.7
Q ss_pred hhhcCCCEEeccCCCcccceee--CceEEEecCCHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKN--EVVGFLCNPTPQEFSLS 86 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~--~~~g~~~~~~~~~l~~~ 86 (134)
+|..|.+.++|--|...|+.++ +.+|+++..+.++..+.
T Consensus 663 ~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev~~~ 703 (815)
T PRK14986 663 FALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEAL 703 (815)
T ss_pred HHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHHHHH
Confidence 9999999999999989898865 77899998766666554
No 166
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=60.78 E-value=28 Score=19.45 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 79 TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 79 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
....+.++++.++ ++.++..|.....++.. ..+.+.....+..++.
T Consensus 4 ~~r~f~~q~~~LL-~~~Er~~~~~~L~~Y~~-~~~Vd~LV~~L~~vLd 49 (78)
T cd07347 4 QAREFSQQVDHLL-TDAEREQVTRALERYHQ-ERNVDDLVRDLYLVLD 49 (78)
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHcC
Confidence 3567888898998 66778888888777774 4488888877776654
No 167
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.98 E-value=21 Score=24.79 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.0
Q ss_pred CchhhhhcCCCEEeccCC
Q 043097 44 KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~ 61 (134)
...|++++|+|+|+-...
T Consensus 252 T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 252 TSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHHHHcCCCEEEEEec
Confidence 577899999999987654
No 168
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=58.64 E-value=53 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=29.6
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
++.++ +...+++.|...+. +|.....+.+|+..+..+ ++..-+.+.+.+.
T Consensus 147 iWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~ 199 (311)
T PRK09545 147 IWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ---LAQTDKQIGNQLA 199 (311)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 44444 56666666666665 888888888887766542 3444444444443
No 169
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.78 E-value=40 Score=25.10 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred cCCCCeEEecccc------ccccCCchhhhhcCCCEEeccCCCccc------ceeeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 26 RGIHPVVLYPAVN------VYQFDKPHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 26 ~~~~~~v~~~g~~------~~~~~~~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
+..+|..+.|+.. .+.-..+.+.+....|+|.++-.+..+ +-+.+..|++... +++++.+.+.++-.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk~ 89 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKT 89 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHHh
Confidence 5777888888862 222223446888999999976543332 2234666777654 78888888877653
No 170
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=54.74 E-value=42 Score=24.72 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred hhhcCC-CEEeccCCCcccceeeCceEEEecC--CHHHHHHHHHHHhcCHHHHHH
Q 043097 48 SMAAYK-PVIACDSGGPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 48 Ama~G~-pvi~s~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~~~~~~~~ 99 (134)
|+-.|. ||+.-. +...+++.+. .-+-+++ ++++|++.|+.+-.|+....+
T Consensus 273 al~~gsVPVvlg~-~n~e~fvP~~-SfI~vdDF~s~~ela~ylk~L~~n~~~Y~~ 325 (372)
T KOG2619|consen 273 ALDAGSVPVVLGP-PNYENFVPPD-SFIHVDDFQSPQELAAYLKKLDKNPAAYLS 325 (372)
T ss_pred hhhcCcccEEECC-ccccccCCCc-ceEehhhcCCHHHHHHHHHHhhcCHHHHHH
Confidence 666665 555444 6566667633 3344554 799999999999988866544
No 171
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=53.01 E-value=26 Score=28.46 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=48.5
Q ss_pred hhhcCCCEEeccCCCcccceee--CceEEEecCCHHHHHHHHHH-------HhcCHHHHHHHHHHHHHHH-HHhcCHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKN--EVVGFLCNPTPQEFSLSMAK-------LIQEPQMAKKMGENARHHV-MESFSTKIF 117 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~--~~~g~~~~~~~~~l~~~i~~-------~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 117 (134)
+|..|.+.|+|--|...|+.++ +.+++++..+.++..+.-.. .-.+|..+.. .+.+ ...|+.. -
T Consensus 647 ~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~-----~d~i~~g~f~~~-~ 720 (794)
T TIGR02093 647 FMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRV-----LDLISSGTFSPG-D 720 (794)
T ss_pred HHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHHHHHHHcCCCchhcccCCHHHHHH-----HHHHhcCCCCCC-C
Confidence 9999999999988888888765 67889988776666654322 2223333222 2222 2345532 1
Q ss_pred HHHHHHHHHHHhcC
Q 043097 118 GQHLNRLLAYVARG 131 (134)
Q Consensus 118 ~~~~~~~~~~~~~~ 131 (134)
...+..+|.+++..
T Consensus 721 ~~~f~~l~~~l~~~ 734 (794)
T TIGR02093 721 PGLFRPLYDSLLNH 734 (794)
T ss_pred chHHHHHHHHHccC
Confidence 34567777777653
No 172
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.40 E-value=65 Score=22.18 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=24.7
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVM 109 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 109 (134)
++.++ +...+++.|...+. +|.....+.+|+..+..
T Consensus 114 ~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 152 (266)
T cd01018 114 IWLSPANAKIMAENIYEALAELDPQNATYYQANLDALLA 152 (266)
T ss_pred cCcCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44444 56777777777666 78777777777776654
No 173
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=52.20 E-value=72 Score=22.08 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=40.8
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC---CchhhhhcCCCEEeccCC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD---KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~eAma~G~pvi~s~~~ 61 (134)
++.|+.+-......+....+.+. ..|.++..|.....++ .+.+|...|.|+|.-+..
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~---~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~ 240 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLA---EADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG 240 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHh---cCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC
Confidence 56777776666555566666665 3688999998777765 456688899999887654
No 174
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=51.86 E-value=30 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=31.8
Q ss_pred hhhcCCCEEeccCCCcccceee--CceEEEecCCHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKN--EVVGFLCNPTPQEFSLS 86 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~--~~~g~~~~~~~~~l~~~ 86 (134)
+|..|.+.|+|--|...|+.+. +.+|+++..+.+++.+.
T Consensus 649 ~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ev~~~ 689 (798)
T PRK14985 649 LALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKAL 689 (798)
T ss_pred HHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHHHHHH
Confidence 9999999999988888888764 67899998776666554
No 175
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.65 E-value=1e+02 Score=23.22 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=64.7
Q ss_pred cceEeecCc----cchhhHHHHHHHHHHcCCCCeEEeccc----c----cccc---------------------CCchhh
Q 043097 2 ADVILVNSK----FTATTFANTFKKLHARGIHPVVLYPAV----N----VYQF---------------------DKPHSS 48 (134)
Q Consensus 2 a~~v~~~s~----~~~~~~~~~~~~~~~~~~~~~v~~~g~----~----~~~~---------------------~~~~eA 48 (134)
.|+|||+.. .....+++..+.....+.+..++..-. . ...| ..++--
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV 263 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV 263 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh
Confidence 578888853 234456676666666665555444321 0 0011 112225
Q ss_pred hhcCCCEEeccCCC-cccc--e-eeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 49 MAAYKPVIACDSGG-PVET--I-KNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 49 ma~G~pvi~s~~~~-~~e~--i-~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
-+.++||+.-.+|- +.++ + .+.-.+-+... |.+.|.+.++.+-. +..+++.++.. .-+|+...+.+++.+
T Consensus 264 aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~--~d~~el~~kl~---~gkFtlrd~y~Qfq~ 338 (483)
T KOG0780|consen 264 AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGK--DDAKELVEKLK---QGKFTLRDFYDQFQN 338 (483)
T ss_pred hhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhh--hhHHHHHHHHH---hCCccHHHHHHHHHH
Confidence 56789998766552 2221 1 11111112223 78888888888862 22233333332 257999999888887
Q ss_pred HHH
Q 043097 124 LLA 126 (134)
Q Consensus 124 ~~~ 126 (134)
+..
T Consensus 339 imk 341 (483)
T KOG0780|consen 339 IMK 341 (483)
T ss_pred HHh
Confidence 764
No 176
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.51 E-value=82 Score=21.95 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCCC------CeEEeccccccccCCchhhhh--cCCCEEeccCCCcccceeeCceEEEecCCHHHHHHH
Q 043097 15 TFANTFKKLHARGIH------PVVLYPAVNVYQFDKPHSSMA--AYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLS 86 (134)
Q Consensus 15 ~~~~~~~~~~~~~~~------~~v~~~g~~~~~~~~~~eAma--~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~ 86 (134)
...++.+.+.+.|.+ +.++-.|-|-...-....+.. .++|++.-+. |..|++.+.+++++.+.
T Consensus 16 ~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~---------G~lGFL~~~~~~~~~~~ 86 (265)
T PRK04885 16 VASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT---------GHLGFYTDWRPFEVDKL 86 (265)
T ss_pred HHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC---------CCceecccCCHHHHHHH
Confidence 344555555555543 334444444333322222222 5888887665 34578876678889888
Q ss_pred HHHHhcC
Q 043097 87 MAKLIQE 93 (134)
Q Consensus 87 i~~~~~~ 93 (134)
+.++++.
T Consensus 87 l~~i~~g 93 (265)
T PRK04885 87 VIALAKD 93 (265)
T ss_pred HHHHHcC
Confidence 8888764
No 177
>PF13169 Poxvirus_B22R_N: Poxvirus B22R protein N-terminal
Probab=50.45 E-value=48 Score=19.12 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=18.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 043097 106 HHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 106 ~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
..+...|+|+.+.+.+.+.|...
T Consensus 44 ~~l~~~fnWt~I~~~V~~~F~~~ 66 (92)
T PF13169_consen 44 ERLESKFNWTSIRESVKDEFIKK 66 (92)
T ss_pred HHHHhcCChHHHHHHHHHHHHHH
Confidence 34668999999999999888653
No 178
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=49.93 E-value=22 Score=23.56 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=33.3
Q ss_pred hhhcCCCEEe-ccCCCccc---ceeeCceEEEecC-CHHHHHHHHHHHhcC
Q 043097 48 SMAAYKPVIA-CDSGGPVE---TIKNEVVGFLCNP-TPQEFSLSMAKLIQE 93 (134)
Q Consensus 48 Ama~G~pvi~-s~~~~~~e---~i~~~~~g~~~~~-~~~~l~~~i~~~~~~ 93 (134)
.....+|||. |..|.++- .++.|-.-|+.+| +.+.+.+++++.+..
T Consensus 72 ~~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 72 ERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 7788899976 55555444 3455555577777 889999999998874
No 179
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.78 E-value=83 Score=21.86 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCCCeEEeccccccccC-CchhhhhcCCCEEec-cCCCcccceee-----CceEEEecC-CHHHHHHHHHHHhc--CHHH
Q 043097 27 GIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIAC-DSGGPVETIKN-----EVVGFLCNP-TPQEFSLSMAKLIQ--EPQM 96 (134)
Q Consensus 27 ~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s-~~~~~~e~i~~-----~~~g~~~~~-~~~~l~~~i~~~~~--~~~~ 96 (134)
.-.+.+++.|...+.+. .+......+.++|.. +.-....+..+ .+..++.++ ....+++.|...+. +|..
T Consensus 49 ~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~ 128 (276)
T cd01016 49 QNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEH 128 (276)
T ss_pred HhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHHCccc
Confidence 34577777776555433 223333223344443 21111111111 122344444 56777777777666 7777
Q ss_pred HHHHHHHHHHHHH
Q 043097 97 AKKMGENARHHVM 109 (134)
Q Consensus 97 ~~~~~~~~~~~~~ 109 (134)
...+.+|+..+..
T Consensus 129 ~~~y~~N~~~~~~ 141 (276)
T cd01016 129 KDEFQANSEAYVE 141 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766553
No 180
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=49.50 E-value=52 Score=19.51 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=26.5
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccCCchhhhhcCCCE
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFDKPHSSMAAYKPV 55 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~eAma~G~pv 55 (134)
+.+|++-++...+...++...+...++ +.+.|.+...+. ..+||+|.
T Consensus 42 aklViiA~D~~~~~kkki~~~~~~~~V-pv~~~~~t~~eL------G~A~Gk~~ 88 (108)
T PTZ00106 42 AKLVIISNNCPPIRRSEIEYYAMLSKT-GVHHYAGNNNDL------GTACGRHF 88 (108)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhhcCC-CEEEeCCCHHHH------HHHhCCcc
Confidence 456777777777776777766665443 222233322221 57777764
No 181
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=49.14 E-value=67 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=29.0
Q ss_pred hhhhcCCCEEeccCCCcccceeeCceEEEecC---CHHHHHHHHH
Q 043097 47 SSMAAYKPVIACDSGGPVETIKNEVVGFLCNP---TPQEFSLSMA 88 (134)
Q Consensus 47 eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~---~~~~l~~~i~ 88 (134)
..+..+.|+|++|.. ...++++.+|++.-. ++++..+...
T Consensus 91 ~~~~~aSPilV~d~~--h~~fg~~PTgViTlhtFRt~~Ea~~l~~ 133 (215)
T PF07368_consen 91 NVPPPASPILVCDFT--HSYFGDGPTGVITLHTFRTPKEAIELCA 133 (215)
T ss_pred CCCCCCCCEEEcCCC--HHHcCCCCCeEEEEEccCCHHHHHHHHh
Confidence 378999999999764 456777888887643 5666665443
No 182
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=48.97 E-value=98 Score=23.77 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 79 TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 79 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
+-.++..++...-++.++.+.+|++|.+++++...++.+..-+..+++
T Consensus 395 ~c~slkfaV~Wgn~h~~~Aq~Igk~gs~f~r~~L~m~~vYdYmfhllq 442 (528)
T KOG2458|consen 395 NCRSLKFAVDWGNNHDEEAQKIGKEGSEFARKNLKMDYVYDYMFHLLQ 442 (528)
T ss_pred chhHHHHHHHhcccChHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 567888889888889999999999999999988998888776655554
No 183
>PHA02516 W baseplate wedge subunit; Provisional
Probab=48.81 E-value=23 Score=20.68 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=33.7
Q ss_pred ceEEEecCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 71 VVGFLCNPTPQEFSLSMAKLIQ----EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 71 ~~g~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+|.+.. +.+++.+.|..++. ....+..+|....+++.+..+ ......+.......
T Consensus 4 ~tG~~~~-~~~~I~qsI~~iL~T~~Ger~~~p~fG~~l~dl~~~~~~-~~~~~~i~~~i~~a 63 (103)
T PHA02516 4 ETGRALS-DLEHIRQSIGDILLTPLGSRVMRREYGSLLPDLIDQPQN-PALRLQIYAACAMA 63 (103)
T ss_pred CCCCCcc-CHHHHHHHHHHHHcCCCcccccCcccccchHHHhCCCCC-HHHHHHHHHHHHHH
Confidence 4555555 68899999999888 335566677666666654444 33344444444433
No 184
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=47.19 E-value=22 Score=24.16 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred CCCeEEeccccccccC-CchhhhhcCCCEEeccCCCccc-ceeeCceEEEecC-CHHHHHHHHHHHhc--CHHHHHHHHH
Q 043097 28 IHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSGGPVE-TIKNEVVGFLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGE 102 (134)
Q Consensus 28 ~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~~~~e-~i~~~~~g~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~ 102 (134)
-.+.+++.|...+.+. ...++.......+..-..++.. .-.++.. ++.++ +...+++.|...+. +|.....+.+
T Consensus 47 ~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~npH-~Wldp~~~~~~~~~Ia~~L~~~~P~~~~~y~~ 125 (256)
T PF01297_consen 47 KADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNPH-VWLDPENAKKMAEAIADALSELDPANKDYYEK 125 (256)
T ss_dssp HSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBEST-GGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred hCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCCCCc-hHHHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3577888886665443 2222223333333322222211 1111222 33333 45566666665555 7777777777
Q ss_pred HHHHHHH
Q 043097 103 NARHHVM 109 (134)
Q Consensus 103 ~~~~~~~ 109 (134)
|+.++..
T Consensus 126 N~~~~~~ 132 (256)
T PF01297_consen 126 NAEKYLK 132 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 185
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=46.91 E-value=94 Score=22.99 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred eEeecCccchhhHHHHHHHHHHcCCCCeEEeccc---------------cccccCCchhhhhcCCCEEeccCCCccc--c
Q 043097 4 VILVNSKFTATTFANTFKKLHARGIHPVVLYPAV---------------NVYQFDKPHSSMAAYKPVIACDSGGPVE--T 66 (134)
Q Consensus 4 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~---------------~~~~~~~~~eAma~G~pvi~s~~~~~~e--~ 66 (134)
+++.+.......++.+.....+. +.+....+ ....|...-|-+++|||.+.-+....++ .
T Consensus 254 ~ivtGP~MP~~~r~~l~~~A~~~---p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQl 330 (400)
T COG4671 254 LIVTGPFMPEAQRQKLLASAPKR---PHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQL 330 (400)
T ss_pred EEEeCCCCCHHHHHHHHHhcccC---CCeEEEEhhhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHH
Confidence 56666666666666655554322 22222222 1222444556899999998876654444 1
Q ss_pred eee------CceEEEecC--CHHHHHHHHHHHhcC
Q 043097 67 IKN------EVVGFLCNP--TPQEFSLSMAKLIQE 93 (134)
Q Consensus 67 i~~------~~~g~~~~~--~~~~l~~~i~~~~~~ 93 (134)
+.- +-..++.+. +++.+++++...+..
T Consensus 331 iRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 331 IRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred HHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 100 222233333 689999999888873
No 186
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=46.27 E-value=45 Score=18.77 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=25.7
Q ss_pred cCCCEEe-ccCCC---cccceeeCceEEEecC-CHHHHHHHHH
Q 043097 51 AYKPVIA-CDSGG---PVETIKNEVVGFLCNP-TPQEFSLSMA 88 (134)
Q Consensus 51 ~G~pvi~-s~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~ 88 (134)
.++|+|. |+... ..+.+.-+..+++..+ +++++.++++
T Consensus 70 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 5777765 43332 2334566778899998 9999988764
No 187
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=45.76 E-value=68 Score=23.77 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=25.3
Q ss_pred hhhcCCCEEeccCC----CcccceeeCceEEEe--cC-CHHHHHHHHHHHhcC
Q 043097 48 SMAAYKPVIACDSG----GPVETIKNEVVGFLC--NP-TPQEFSLSMAKLIQE 93 (134)
Q Consensus 48 Ama~G~pvi~s~~~----~~~e~i~~~~~g~~~--~~-~~~~l~~~i~~~~~~ 93 (134)
|++.|+|+|+-... ++-+-+.-. ++.. .+ +.+.+.+.+.+.+..
T Consensus 300 al~~g~p~i~i~Y~~K~~~l~~~~gl~--~~~~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 300 ALAFGVPAIAIAYDPKVRGLMQDLGLP--GFAIDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred HHhcCCCeEEEeecHHHHHHHHHcCCC--cccccCCCCchHHHHHHHHHHHhc
Confidence 99999999985332 222222111 2222 23 677777777776663
No 188
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=45.12 E-value=58 Score=24.42 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=53.2
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccc------------cCCchhhhhcC-----------------
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQ------------FDKPHSSMAAY----------------- 52 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~------------~~~~~eAma~G----------------- 52 (134)
+|+|++.+.+.......++..+.+ |.|-+... |... .++.-+
T Consensus 247 pDYiL~~k~~~~kli~alk~~l~e--------FYG~n~~eS~d~sRiIn~~hf~Rl-~~ll~~~~kv~~Gg~~d~~d~~I 317 (477)
T KOG2456|consen 247 PDYILCSKSIQPKLIDALKSTLKE--------FYGENPKESKDLSRIINQRHFQRL-SALLDETGKVAIGGESDESDRYI 317 (477)
T ss_pred CCeEEecHhhhHHHHHHHHHHHHH--------HhCCCccccccHHHHhhHHHHHHH-HHHhcCCCceecCCccchhhccc
Confidence 688888888777776666666653 23321111 1111 133333
Q ss_pred CCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhcC
Q 043097 53 KPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQE 93 (134)
Q Consensus 53 ~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~ 93 (134)
-|.|..|++-...++.+.--|-+.+. +++++.++|+-+-+.
T Consensus 318 ~PTIL~DV~~~~p~M~eEIFGPiLPIi~v~~l~Eai~~In~~ 359 (477)
T KOG2456|consen 318 APTILLDVPEDSPVMQEEIFGPILPIITVQSLDEAINFINER 359 (477)
T ss_pred CCeEEecCCCCChhhhhhhccCccceeEhhhHHHHHHHHhcC
Confidence 58888888877778877766766666 889999988776553
No 189
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.92 E-value=1.3e+02 Score=22.66 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=39.8
Q ss_pred hhhhhcCCCEEeccCCCccccee----eCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 043097 46 HSSMAAYKPVIACDSGGPVETIK----NEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQH 120 (134)
Q Consensus 46 ~eAma~G~pvi~s~~~~~~e~i~----~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 120 (134)
+-+...|+|+..-.+|---+-+. +.-...+... |+..|.+.++..+ +.+..+.+.++. ....|+.+.+.++
T Consensus 253 s~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~-~~~~~~~~~~~~---~~~~f~l~d~~~q 328 (437)
T PRK00771 253 SAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEAL-DEEEEEKDVEKM---MKGKFTLKDMYKQ 328 (437)
T ss_pred HHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhh-hHHHHHHHHHHH---HcCCcCHHHHHHH
Confidence 33778899996654442111111 1111111222 6777777777655 333333333332 2356899888887
Q ss_pred HHHHH
Q 043097 121 LNRLL 125 (134)
Q Consensus 121 ~~~~~ 125 (134)
+..+-
T Consensus 329 ~~~~~ 333 (437)
T PRK00771 329 LEAMN 333 (437)
T ss_pred HHHHH
Confidence 77654
No 190
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=44.87 E-value=55 Score=22.72 Aligned_cols=37 Identities=11% Similarity=0.242 Sum_probs=23.7
Q ss_pred eeCceEEEecC-C----HHHHHHHHHHHhcCHHHHHHHHHHH
Q 043097 68 KNEVVGFLCNP-T----PQEFSLSMAKLIQEPQMAKKMGENA 104 (134)
Q Consensus 68 ~~~~~g~~~~~-~----~~~l~~~i~~~~~~~~~~~~~~~~~ 104 (134)
-....|++.+. . .+.|.+++++..++|+..+.+.+.+
T Consensus 202 ~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~pe~~~~~~~~g 243 (274)
T PF03401_consen 202 FGSWRGLFAPKGTPDEIVDKLADAIKKALEDPEFQEFLEKMG 243 (274)
T ss_dssp -EEEEEEEEETTS-HHHHHHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred eeeeeeeecCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 34566888877 3 4667777777777887776665544
No 191
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=44.78 E-value=3.6 Score=21.42 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=28.3
Q ss_pred EeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccCC-------chhhhhcCCCEEecc
Q 043097 5 ILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFDK-------PHSSMAAYKPVIACD 59 (134)
Q Consensus 5 v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-------~~eAma~G~pvi~s~ 59 (134)
++.-++|.......+.+.+..+|-.-.--+ .......+. .-.|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~l-t~~~THLI~~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGKYSKDL-TKKTTHLICSSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-EEESSS-STT-SEEEEES--HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEeccc-cCCceEEEEeCCCcHHHHHHHHCCCcEECCC
Confidence 455667777777778888877653211111 111111111 112888898888654
No 192
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=43.47 E-value=5.5 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=12.0
Q ss_pred hhhcCCCEEec-cCCCcccceeeCceEEEecC-CHHHHHHHHH
Q 043097 48 SMAAYKPVIAC-DSGGPVETIKNEVVGFLCNP-TPQEFSLSMA 88 (134)
Q Consensus 48 Ama~G~pvi~s-~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~ 88 (134)
|...|+|+++. |.....+ +....+-+-.+. ++++|.++|+
T Consensus 11 A~~~~lp~~~gSDAH~~~~-vG~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 11 AEKYGLPFTGGSDAHFLEE-VGRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHTT--EEEE--BSSGGG-TTTTHHHH---------------
T ss_pred HHHcCCCeEeEEcccChhh-cCCEeeecccccccccccccccc
Confidence 66789999884 6554444 433322121111 4566666554
No 193
>PHA00451 protein kinase
Probab=43.32 E-value=47 Score=23.54 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=24.2
Q ss_pred cCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhc
Q 043097 51 AYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ 92 (134)
Q Consensus 51 ~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~ 92 (134)
.|+|+|+-++....+-- ...| ++.||++|...++.+..
T Consensus 205 ~g~p~ITDPVSFS~dr~--re~G--F~ldPd~LiaEvEaia~ 242 (362)
T PHA00451 205 DGVPYITDPVSFSHDRE--REPG--FPLDPDELIAEVEAIAN 242 (362)
T ss_pred CCCeEecCCccccCccc--cCCC--CCCCHHHHHHHHHHHHH
Confidence 47888887776443322 2335 33389999888887754
No 194
>PRK06683 hypothetical protein; Provisional
Probab=42.37 E-value=62 Score=18.08 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=27.5
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccCCchh-hhhcCCCEEec
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFDKPHS-SMAAYKPVIAC 58 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~e-Ama~G~pvi~s 58 (134)
+.+|++.++-......++...+...++.- +.+. .-.| ..+||+|+-++
T Consensus 28 aklViiA~Da~~~~~~~i~~~~~~~~Vpv-~~~~--------t~~eLG~A~G~~~~~a 76 (82)
T PRK06683 28 VKEVVIAEDADMRLTHVIIRTALQHNIPI-TKVE--------SVRKLGKVAGIQVGAS 76 (82)
T ss_pred eeEEEEECCCCHHHHHHHHHHHHhcCCCE-EEEC--------CHHHHHHHhCCcccEE
Confidence 45667777766776666666666554422 2222 1112 67888887554
No 195
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.20 E-value=96 Score=22.28 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=57.0
Q ss_pred CccchhhHHHHHHHHHH-cCCCCeEEeccc-----cccccCCchh-hhhcCCCEEeccCC-CcccceeeCceEEEecCCH
Q 043097 9 SKFTATTFANTFKKLHA-RGIHPVVLYPAV-----NVYQFDKPHS-SMAAYKPVIACDSG-GPVETIKNEVVGFLCNPTP 80 (134)
Q Consensus 9 s~~~~~~~~~~~~~~~~-~~~~~~v~~~g~-----~~~~~~~~~e-Ama~G~pvi~s~~~-~~~e~i~~~~~g~~~~~~~ 80 (134)
...+...++.+.+.+.. +.-.+.|++.|. ..+.|....+ +-..|..++.--.+ .+.+.++.. .+++.++.
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~--P~lIKPN~ 186 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK--PWLIKPNR 186 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC--CcEEecCH
Confidence 33455666777777766 677788888884 4555554444 55568888774333 666777555 57888888
Q ss_pred HHHHHHHHHHhcCHH
Q 043097 81 QEFSLSMAKLIQEPQ 95 (134)
Q Consensus 81 ~~l~~~i~~~~~~~~ 95 (134)
+++...+..-+.+..
T Consensus 187 ~EL~~~~g~~~~~~~ 201 (310)
T COG1105 187 EELEALFGRELTTLE 201 (310)
T ss_pred HHHHHHhCCCCCChH
Confidence 999887777666543
No 196
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=42.00 E-value=15 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.2
Q ss_pred CchhhhhcCCCEEeccCC
Q 043097 44 KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~ 61 (134)
+-+||+.+|+||++-..+
T Consensus 210 vGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 210 VGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHHHcCCceEEecCc
Confidence 345799999999997554
No 197
>PF15586 Imm47: Immunity protein 47
Probab=41.31 E-value=45 Score=20.10 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=15.3
Q ss_pred ceEEEecC-CHHHHHHHHHHHhc
Q 043097 71 VVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 71 ~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
+.-++++. |.+.+.+.|++++.
T Consensus 68 r~~LIv~~yd~~~I~~~i~~~i~ 90 (116)
T PF15586_consen 68 RHMLIVEEYDYDEIKKTIERIIE 90 (116)
T ss_pred cceEEEecCCHHHHHHHHHHHHH
Confidence 33456665 88888888877775
No 198
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=41.25 E-value=1.3e+02 Score=21.55 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=32.1
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhc
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ 92 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~ 92 (134)
+....++|.+.++.|+++...+. ..++.+|+.+++.+..+..
T Consensus 243 s~~~~~~vs~~PNAGLP~~~g~~---~~Y~~~p~~~a~~~~~f~~ 284 (311)
T COG0646 243 SRIADAFVSVYPNAGLPNAFGER---AVYDLTPEYMAEALAEFAE 284 (311)
T ss_pred HhccCceEEEeCCCCCCcccCCc---cccCCCHHHHHHHHHHHHH
Confidence 66778888888999999877432 3444489999999987765
No 199
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.06 E-value=52 Score=23.46 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=26.6
Q ss_pred hhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCH
Q 043097 49 MAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEP 94 (134)
Q Consensus 49 ma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~ 94 (134)
...++|++.-+. |..|++.+.+++++.+.+.+++...
T Consensus 93 ~~~~~PilGIN~---------G~lGFL~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 93 RAADVPVLGVNL---------GHVGFLAEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred ccCCCcEEEEec---------CCCceeccCCHHHHHHHHHHHHcCC
Confidence 345677776554 4457888778899999998888643
No 200
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=39.95 E-value=86 Score=22.99 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=39.4
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEecC---CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNP---TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNR 123 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 123 (134)
.+.+|+||+.+........+.+...-+++.. +.+.+.++=+++.. |+. .-.|.-.+..+.|.+
T Consensus 285 Ll~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk~-------------~iaFf~pny~~~w~~ 351 (360)
T PF07429_consen 285 LLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDKQ-------------QIAFFAPNYLQGWRQ 351 (360)
T ss_pred HHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCccc-------------ceeeeCCchHHHHHH
Confidence 8999999999866555555544333344432 46666555444433 211 123666777777777
Q ss_pred HHHHH
Q 043097 124 LLAYV 128 (134)
Q Consensus 124 ~~~~~ 128 (134)
.+.-.
T Consensus 352 ~l~~~ 356 (360)
T PF07429_consen 352 ALRLA 356 (360)
T ss_pred HHHHH
Confidence 76543
No 201
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=39.70 E-value=46 Score=22.74 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=23.1
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccc
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAV 37 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 37 (134)
+|.++|+........++....+++..--+.++|||.
T Consensus 33 tDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~ 68 (230)
T PF01884_consen 33 TDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGS 68 (230)
T ss_dssp -SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETST
T ss_pred CCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCC
Confidence 578888865544455666666666556688999985
No 202
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=39.51 E-value=39 Score=17.05 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHH
Q 043097 81 QEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTK 115 (134)
Q Consensus 81 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 115 (134)
+++.+++..++.+.+.-.--.+..|+.+.++|+.+
T Consensus 3 ~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~d 37 (54)
T PF08766_consen 3 EEIREAIREILREADLDTVTKKQVREQLEERFGVD 37 (54)
T ss_dssp HHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS-
T ss_pred HHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCC
Confidence 57788888888755433333344555566665444
No 203
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=38.31 E-value=48 Score=15.69 Aligned_cols=25 Identities=4% Similarity=0.149 Sum_probs=18.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 104 ARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
....+.++|-|..+.+...++.++.
T Consensus 11 T~~~i~~~y~W~gm~~~V~~~ir~C 35 (39)
T PF09337_consen 11 TTAKISQRYHWPGMKKDVRRVIRSC 35 (39)
T ss_pred HHHHHHHhheecCHHHHHHHHHhcC
Confidence 3445678999999998888877653
No 204
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.28 E-value=1.7e+02 Score=22.02 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=39.6
Q ss_pred hhhcCCCEEeccCCC-cccce---eeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGG-PVETI---KNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 48 Ama~G~pvi~s~~~~-~~e~i---~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+...|+|+....+|- ..++- .+.-...+... |+..|.+.++..+. .+....+.++. ....|+.+.+.+++.
T Consensus 262 ~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~-~~~~~~~~~~~---~~~~f~l~d~~~q~~ 337 (428)
T TIGR00959 262 RSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVD-EEEAKKLAEKM---KKGQFDLEDFLEQLR 337 (428)
T ss_pred HHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhC-HHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 677899998765542 11111 01111111222 67777777776653 33333333332 235699998888877
Q ss_pred HHH
Q 043097 123 RLL 125 (134)
Q Consensus 123 ~~~ 125 (134)
.+-
T Consensus 338 ~~~ 340 (428)
T TIGR00959 338 QIK 340 (428)
T ss_pred HHH
Confidence 654
No 205
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.22 E-value=48 Score=23.44 Aligned_cols=36 Identities=19% Similarity=0.488 Sum_probs=26.4
Q ss_pred hcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCH
Q 043097 50 AAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEP 94 (134)
Q Consensus 50 a~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~ 94 (134)
..++|++.-+.| ..|++.+.+++++.+.+.+++...
T Consensus 86 ~~~~PilGIN~G---------~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 86 NSNIPILGINTG---------RLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCCCEEEEecC---------CCCcccccCHHHHHHHHHHHHcCC
Confidence 346777776654 357887778899999999988753
No 206
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.76 E-value=44 Score=24.12 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=32.2
Q ss_pred CchhhhhcCCCEEeccCC---CcccceeeCceEEEecC-CHHHHHHHHHHHhcCH
Q 043097 44 KPHSSMAAYKPVIACDSG---GPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQEP 94 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~~~ 94 (134)
+..||...|+|.|.+.-| +..+... +.|.++.. |+.+..+...+.+.++
T Consensus 263 MarEaAlLGtpaIs~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~~ 315 (346)
T COG1817 263 MAREAALLGTPAISCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKYR 315 (346)
T ss_pred HHHHHHHhCCceEEecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhch
Confidence 345699999999998633 2333332 23666665 7777777777776655
No 207
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=37.75 E-value=1.5e+02 Score=21.12 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHcCCCCeEEeccccccccC-CchhhhhcCCCEEe-ccCCCccccee--------e-----------------------C
Q 043097 24 HARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIA-CDSGGPVETIK--------N-----------------------E 70 (134)
Q Consensus 24 ~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~-s~~~~~~e~i~--------~-----------------------~ 70 (134)
+.+.-.+.|++.|.+.+.|. .|++.+ -|.-+|+ .+.+++..+.- + -
T Consensus 71 ~rlq~Adlv~WvGp~lEaFL~Kpl~~l-~~~kvv~l~d~~~v~~L~~r~~hd~~~e~~h~hdH~~~dh~~d~dH~H~G~~ 149 (318)
T COG4531 71 KRLQSADLVVWVGPDLEAFLDKPLSGL-PGAKVVTLADLPGVKPLLFREAHDHEEEHDHGHDHAGADHKGDHDHHHEGEY 149 (318)
T ss_pred HHhhcCCEEEEECccHHHHhhhhhhcc-ccCcEEehhhcCCCcccccccccCccccccccccccCccccCcccccCCCCc
Confidence 33344588999999988887 677776 3333333 44444222110 0 0
Q ss_pred ceEEEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Q 043097 71 VVGFLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHV 108 (134)
Q Consensus 71 ~~g~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~ 108 (134)
+.-++.++ +...++.+|..-+. +|+...++.+|..++-
T Consensus 150 d~H~Wl~P~~ak~~A~~i~~~L~e~dp~~~a~y~aNlk~f~ 190 (318)
T COG4531 150 DMHLWLSPAIAKAVAAAIAKKLAELDPQNAAKYDANLKDFE 190 (318)
T ss_pred CceeeechhHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Confidence 11234444 66677776665444 7888777777765543
No 208
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.50 E-value=75 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=26.7
Q ss_pred hcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 50 AAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 50 a~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
..++|++.-+.| ..|++.+.+++++.+.+.++++.
T Consensus 90 ~~~~PilGIN~G---------~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 90 PRAVPIIGINQG---------HLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred ccCCCEEEEecC---------CCeEeeccCHHHHHHHHHHHHcC
Confidence 347788776653 46888877889999999998864
No 209
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.43 E-value=50 Score=23.55 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=27.6
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCH
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEP 94 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~ 94 (134)
....++|++.-+. |..|++.+.+++++.+.+++++...
T Consensus 88 ~~~~~iPilGIN~---------G~lGFLt~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 88 LAPCGIPLLTINT---------GHLGFLTEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred hcCCCCcEEEEeC---------CCCcccccCCHHHHHHHHHHHHcCC
Confidence 3446778877655 3457777767889999999988753
No 210
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=36.99 E-value=47 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=12.9
Q ss_pred CchhhhhcCCCEEeccC
Q 043097 44 KPHSSMAAYKPVIACDS 60 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~ 60 (134)
.+..+|.+|+|.|+-+.
T Consensus 359 ~~~~yl~ag~p~vvg~L 375 (383)
T PF03568_consen 359 TPLSYLLAGCPLVVGNL 375 (383)
T ss_pred cHHHHHhcCChheEeec
Confidence 56669999999987543
No 211
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=36.94 E-value=1.5e+02 Score=20.80 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC---CchhhhhcCCCEEeccCCCcccceeeCceEEEecC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD---KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP 78 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~ 78 (134)
+|.|+.+.......++...+.+. ..|.++..|.....++ .+..|...|.|+|.-+....+ ..+....+.+..
T Consensus 176 P~VV~FGE~lp~~~~~~a~~~~~---~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~--~~~~~~d~~i~~ 250 (271)
T PTZ00409 176 PNVILFGEVIPKSLLKQAEKEID---KCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY--ITNRISDYHVRA 250 (271)
T ss_pred CcEEEeCCcCCHHHHHHHHHHHH---cCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC--CCCccccEEEEC
Confidence 46777776666666666666664 3588888998777666 345588899999876654332 111111244443
Q ss_pred CHHHHHH
Q 043097 79 TPQEFSL 85 (134)
Q Consensus 79 ~~~~l~~ 85 (134)
+..++..
T Consensus 251 ~~~~~~~ 257 (271)
T PTZ00409 251 KFSELAQ 257 (271)
T ss_pred cHHHHHH
Confidence 5666664
No 212
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=36.79 E-value=65 Score=22.76 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=25.2
Q ss_pred hcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 50 AAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 50 a~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
..++|++.-+. +..|++.+.+++++.+.+.+++..
T Consensus 85 ~~~~pilGIn~---------G~lGFL~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 85 PYGVPLIGINH---------GRLGFITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCCCEEEEcC---------CCccccccCCHHHHHHHHHHHHcC
Confidence 45777776554 334787766889999999888764
No 213
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.76 E-value=1.4e+02 Score=20.61 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.1
Q ss_pred hhhhhcCCCEEeccCC
Q 043097 46 HSSMAAYKPVIACDSG 61 (134)
Q Consensus 46 ~eAma~G~pvi~s~~~ 61 (134)
.++...|+|||..+..
T Consensus 76 ~~~~~~giPvV~~~~~ 91 (303)
T cd01539 76 NKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHCCCCEEEeCCC
Confidence 3467889999987654
No 214
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=36.43 E-value=57 Score=18.11 Aligned_cols=8 Identities=0% Similarity=-0.147 Sum_probs=3.2
Q ss_pred CHHHHHHH
Q 043097 93 EPQMAKKM 100 (134)
Q Consensus 93 ~~~~~~~~ 100 (134)
|+....+.
T Consensus 31 N~~yl~~s 38 (77)
T PF10911_consen 31 NAAYLMAS 38 (77)
T ss_pred cHHHHHHh
Confidence 44443333
No 215
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.42 E-value=1.4e+02 Score=20.56 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 52 YKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 52 G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
++|++.-+.| ..|++.+.+++++.+.+.+++..
T Consensus 62 ~~Pilgin~G---------~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 62 GTPLVGFKAG---------RLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCEEEEeCC---------CCccccccCHHHHHHHHHHHHcC
Confidence 8898876643 35787776788888888887764
No 216
>PF08757 CotH: CotH protein; InterPro: IPR014867 Members of this group include the Bacillus subtilis spore coat protein H (CotH). Assembly of CotH requires both CotE and GerE and is reuired for the correct assembly of both inner and outer layers of the coat. CotH appears to be a structural component of the coat being localised at the interface of the 2 coat layers [, , ].
Probab=36.11 E-value=1.5e+02 Score=20.65 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 86 SMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 86 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
-+.+++.+|.-+..+.++-.+.....|+.+.+.+.+.+....+
T Consensus 243 l~~~ll~~~~f~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i 285 (323)
T PF08757_consen 243 LFRRLLKNPEFRARYKARWKELRNGVFSPERLEARIDDYAALI 285 (323)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 3467888898888888887777767898888887777666544
No 217
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=35.72 E-value=79 Score=22.98 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=12.4
Q ss_pred CchhhhhcCCCEEec
Q 043097 44 KPHSSMAAYKPVIAC 58 (134)
Q Consensus 44 ~~~eAma~G~pvi~s 58 (134)
..+|++.+|+|.|+.
T Consensus 246 ~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 246 ATLEAALIGTPFVLA 260 (347)
T ss_pred HHHHHHHhCCCEEEE
Confidence 455899999999884
No 218
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=35.26 E-value=1.2e+02 Score=21.55 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=10.6
Q ss_pred CchhhhhcCCCEEec
Q 043097 44 KPHSSMAAYKPVIAC 58 (134)
Q Consensus 44 ~~~eAma~G~pvi~s 58 (134)
+++||.+.|+||.+-
T Consensus 257 M~sEAasTgkPv~~~ 271 (329)
T COG3660 257 MCSEAASTGKPVFIL 271 (329)
T ss_pred hhHHHhccCCCeEEE
Confidence 566788888887553
No 219
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.02 E-value=58 Score=23.08 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=24.3
Q ss_pred cCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 51 AYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 51 ~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
.++|++.-+. +..|++.+.+++++.+.+.+++..
T Consensus 85 ~~~Pvlgin~---------G~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 85 HNVPVLGINR---------GRLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCCEEEEeC---------CcccccccCCHHHHHHHHHHHHcC
Confidence 4566665444 456777766889999999988764
No 220
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=34.34 E-value=1.4e+02 Score=19.82 Aligned_cols=57 Identities=5% Similarity=0.036 Sum_probs=37.2
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC---CchhhhhcCCCEEeccCC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD---KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~eAma~G~pvi~s~~~ 61 (134)
++.|+.+-......+.+..+.+. ..|.++..|.....++ .+.++...|.|+|.-+..
T Consensus 132 P~VV~FgE~lp~~~~~~a~~~~~---~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 132 DTIVDFGERLPPENWMGAAAAAC---RADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CcEEECCCCCCHHHHHHHHHHHh---cCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 45666665555544555555554 4588899998766655 455678889999875443
No 221
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.22 E-value=1.6e+02 Score=20.52 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=25.3
Q ss_pred CCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcCH
Q 043097 52 YKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQEP 94 (134)
Q Consensus 52 G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~~ 94 (134)
.+|++.-+.+ |..|++.+.+++++.+.+.++++..
T Consensus 64 ~~pilgIn~~--------G~lGFL~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 64 DCLYAGISTK--------DQLGFYCDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred CCeEEeEecC--------CCCeEcccCCHHHHHHHHHHHHcCC
Confidence 5677665552 3568887768899999998887643
No 222
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.17 E-value=1.6e+02 Score=20.41 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=43.3
Q ss_pred ceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC-CchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHH
Q 043097 3 DVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQ 81 (134)
Q Consensus 3 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~ 81 (134)
++|.+..-|+.+. -..++++.+.+-.|.--+-....+. ...-|+.+|+|||.-+.+..+. + +..+. +.+
T Consensus 176 ~iia~~gPfs~e~---n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~----~--~~~~~-~~~ 245 (256)
T TIGR00715 176 RIIAMRGPFSEEL---EKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP----G--VAIFD-DIS 245 (256)
T ss_pred cEEEEeCCCCHHH---HHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC----C--CccCC-CHH
Confidence 3455555566544 4455555555444444433332222 3344999999999987764321 1 12223 677
Q ss_pred HHHHHHHHHh
Q 043097 82 EFSLSMAKLI 91 (134)
Q Consensus 82 ~l~~~i~~~~ 91 (134)
++.+.+.+++
T Consensus 246 el~~~l~~~~ 255 (256)
T TIGR00715 246 QLNQFVARLL 255 (256)
T ss_pred HHHHHHHHhc
Confidence 7777776543
No 223
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.03 E-value=1.4e+02 Score=20.93 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
++.++ +...+++.|.+.+. +|.....+.+|+..+..+ ++..-+.+.+.+.
T Consensus 119 ~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~ 171 (287)
T cd01137 119 AWMSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAK---LKALDEWAKAKFA 171 (287)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 44444 56777777776665 777777777777665542 3334444444443
No 224
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.63 E-value=1.3e+02 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCeEEeccccccccC-CchhhhhcCCCEEeccCC
Q 043097 17 ANTFKKLHARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~ 61 (134)
.+..+.+...+. +-+++.+.+.+... ...++...|.|||..+.+
T Consensus 50 ~~~~~~l~~~~v-Dgiii~~~~~~~~~~~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 50 NAQQDLLINRKI-DALVILPFESAPLTQPVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHHHcCC-CEEEEeCCCchhhHHHHHHHHHCCCeEEEEcCC
Confidence 344444443344 33333343333222 234467889999997654
No 225
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=33.60 E-value=75 Score=24.37 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHH-HHcCCCCeEEecccc------ccccCCchhhhhcCCCEEeccCCCccc------ceeeCceEEEecC-CHHHHH
Q 043097 19 TFKKL-HARGIHPVVLYPAVN------VYQFDKPHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP-TPQEFS 84 (134)
Q Consensus 19 ~~~~~-~~~~~~~~v~~~g~~------~~~~~~~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~-~~~~l~ 84 (134)
+++.. ..+..+|..+.|+.. .+.-..+.+-+....|+|.++-....+ +-..+..|++... +++..+
T Consensus 10 ~~~~~~~~lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~ 89 (495)
T PTZ00314 10 LFNSIPTGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQV 89 (495)
T ss_pred HhcCCCcCCCccceEecccccccccccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHH
Confidence 45444 346677888888863 222224556888999999875443333 2345677888665 788888
Q ss_pred HHHHHHhc
Q 043097 85 LSMAKLIQ 92 (134)
Q Consensus 85 ~~i~~~~~ 92 (134)
+.+.++..
T Consensus 90 ~~v~kvk~ 97 (495)
T PTZ00314 90 EEVRKVKR 97 (495)
T ss_pred HHHhhccc
Confidence 87777653
No 226
>PRK14142 heat shock protein GrpE; Provisional
Probab=33.33 E-value=1.6e+02 Score=20.12 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 80 PQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 80 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+++.+.+.++..+-++.....++-++.+ ..|..+.++..++.++.++
T Consensus 49 ~~elkdk~lR~~AEfEN~RKR~erE~e~~-~~~A~e~~~kdLLpVlDnL 96 (223)
T PRK14142 49 VAELTADLQRVQADFANYRKRALRDQQAA-ADRAKASVVSQLLGVLDDL 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHhHH
Confidence 45555555556555555555555555545 5688888888887777543
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=33.26 E-value=2.1e+02 Score=21.60 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=39.3
Q ss_pred hhhcCCCEEeccCCC-cccce---eeCceEEEecC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 48 SMAAYKPVIACDSGG-PVETI---KNEVVGFLCNP-TPQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 48 Ama~G~pvi~s~~~~-~~e~i---~~~~~g~~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+...|+|+....+|- ..++- .+.-...+... |+..|.+.++..+ +.+....+.++. ....|+.+.+.+++.
T Consensus 263 ~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~-~~~~~~~~~~~~---~~g~f~l~d~~~q~~ 338 (433)
T PRK10867 263 RAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVV-DEEKAEKLAKKL---KKGKFDLEDFLEQLQ 338 (433)
T ss_pred HHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhh-CHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 677899997765541 11111 11111112222 6667777766655 333333333332 235699998888887
Q ss_pred HHH
Q 043097 123 RLL 125 (134)
Q Consensus 123 ~~~ 125 (134)
.+-
T Consensus 339 ~~~ 341 (433)
T PRK10867 339 QMK 341 (433)
T ss_pred HHH
Confidence 654
No 228
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=32.88 E-value=58 Score=23.37 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCeEEeccccccccCCchhhhhcCCCEEeccC
Q 043097 18 NTFKKLHARGIHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDS 60 (134)
Q Consensus 18 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~ 60 (134)
++...+.+.-.+..++++|.....-...+-...+|+|+|+...
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFes 306 (425)
T KOG4540|consen 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFES 306 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccCCceEEecC
Confidence 4556666666677888888866554444456667777777433
No 229
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=32.88 E-value=58 Score=23.37 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCeEEeccccccccCCchhhhhcCCCEEeccC
Q 043097 18 NTFKKLHARGIHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDS 60 (134)
Q Consensus 18 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~ 60 (134)
++...+.+.-.+..++++|.....-...+-...+|+|+|+...
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fglP~VaFes 306 (425)
T COG5153 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFGLPVVAFES 306 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccCCceEEecC
Confidence 4556666666677888888866554444456667777777433
No 230
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.79 E-value=1.4e+02 Score=20.72 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=29.4
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
++.++ +...+++.|...+. +|.....+.+|+.++..+ ++..-+.+.+.+.
T Consensus 115 ~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~ 167 (282)
T cd01017 115 VWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKK---LEALDQEYRAKLA 167 (282)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 44444 56667777766665 777777777777665542 3444444444443
No 231
>COG3628 Phage baseplate assembly protein W [General function prediction only]
Probab=32.58 E-value=79 Score=19.08 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=38.0
Q ss_pred CceEEEecCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 70 EVVGFLCNPTPQEFSLSMAKLIQEP----QMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 70 ~~~g~~~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
...|..+. +.+++.+.|+.+++.| -.+..+|.+..+.+.+.-+..--.+....++..+
T Consensus 10 ~rsg~~~s-~~dhirQSi~~IL~Tp~GsRvmRp~yGs~L~~Lid~p~~~a~~~~i~a~v~~Al 71 (116)
T COG3628 10 RRSGLALS-DLDHIRQSIRDILSTPLGSRVMRPDYGSNLPRLIDQPINPALRSRIMAAVAQAL 71 (116)
T ss_pred cCcCcccc-ccHHHHHHHHHHHhCCCCccccccccccchHHHHhcccCHHHHHHHHHHHHHHH
Confidence 34466555 6899999999999843 5677778888877765555544444444444443
No 232
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=32.45 E-value=1e+02 Score=17.77 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=20.2
Q ss_pred cceEeecCc-cchhhHHHHHHHHHHc---C-CCCeEEeccc
Q 043097 2 ADVILVNSK-FTATTFANTFKKLHAR---G-IHPVVLYPAV 37 (134)
Q Consensus 2 a~~v~~~s~-~~~~~~~~~~~~~~~~---~-~~~~v~~~g~ 37 (134)
||++++|+- ++...-++..+.+.++ + ....++..|.
T Consensus 37 AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC 77 (98)
T PF00919_consen 37 ADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGC 77 (98)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 788888874 4554444444444332 2 3455666665
No 233
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=32.43 E-value=1.3e+02 Score=22.62 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=31.9
Q ss_pred eeeCceEEEecCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 043097 67 IKNEVVGFLCNPTPQEFSLSMAKLIQEP-QMAKKMGENARHHVMESFSTKIFGQHLN 122 (134)
Q Consensus 67 i~~~~~g~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 122 (134)
+.+.+.|.+.. +..+++.++.+-.+. ..+..++ ++.+....+|+|..+..++.
T Consensus 320 ~~~~k~~~LSa--~aAvads~~dL~~H~~a~~~a~~-aAlr~lL~~FsPq~L~~Rf~ 373 (430)
T COG3456 320 FAEGKSGHLSA--EAAVADSFRDLRAHELAAQAAVQ-AALRALLDRFSPQALLRRFD 373 (430)
T ss_pred HhcCCccccCh--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHhcc
Confidence 34444444432 667777777776644 3333444 44445558999998887764
No 234
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=32.30 E-value=84 Score=22.99 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=38.2
Q ss_pred cCCCCeEEeccccccc------cCC--chhhhhcCCCEEeccCCCccc------ceeeCceEEEecC-CHHHHHHHHHHH
Q 043097 26 RGIHPVVLYPAVNVYQ------FDK--PHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP-TPQEFSLSMAKL 90 (134)
Q Consensus 26 ~~~~~~v~~~g~~~~~------~~~--~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~-~~~~l~~~i~~~ 90 (134)
+..+|..+.|+...-. -.. .......++|+|+++-....+ +-..+..|++... ++++.++.+.++
T Consensus 3 ltfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~v 82 (352)
T PF00478_consen 3 LTFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKV 82 (352)
T ss_dssp --GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHH
T ss_pred CccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhhh
Confidence 3456777888763211 111 336889999999997654333 2345677888776 677777666655
No 235
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=31.98 E-value=1e+02 Score=18.12 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCeEEeccc-cccccCCchhhhhcCCCEEeccCCC
Q 043097 17 ANTFKKLHARGIHPVVLYPAV-NVYQFDKPHSSMAAYKPVIACDSGG 62 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~eAma~G~pvi~s~~~~ 62 (134)
+++++...+.|-.+.|+..|. +.+.-....|-...|=|..+-+..|
T Consensus 7 ~rvk~~aek~g~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGPLaG 53 (107)
T PRK14717 7 KRIKELAEKYGAENIVVILGAAEAEAAGLAAETVTNGDPTFAGPLAG 53 (107)
T ss_pred HHHHHHHHhcCCccEEEEecCcchhhccceeeeeccCCCcccccccc
Confidence 457788888899999999986 4555555666667777766655544
No 236
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.35 E-value=1.1e+02 Score=23.49 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCCeEEecccc------ccccCCchhhhhcCCCEEeccCCCccc------ceeeCceEEEecC-CHHHH
Q 043097 17 ANTFKKLHARGIHPVVLYPAVN------VYQFDKPHSSMAAYKPVIACDSGGPVE------TIKNEVVGFLCNP-TPQEF 83 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~~------~~~~~~~~eAma~G~pvi~s~~~~~~e------~i~~~~~g~~~~~-~~~~l 83 (134)
++++.....+..+|..+.|+.. .+.-....+-+.+..|+|.++-+...+ +...+..|++... +++..
T Consensus 13 ~~~~~~~~~ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q 92 (505)
T PLN02274 13 EKLFNQGVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNTAEEQ 92 (505)
T ss_pred HHHhcCCCCCCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCCCHHHH
Confidence 3356544556778888888863 222234556888999999865443332 2234556776655 68888
Q ss_pred HHHHHHHhc
Q 043097 84 SLSMAKLIQ 92 (134)
Q Consensus 84 ~~~i~~~~~ 92 (134)
...+++...
T Consensus 93 ~~~Irkvk~ 101 (505)
T PLN02274 93 AAIVRKAKS 101 (505)
T ss_pred HHHHHHhhc
Confidence 888877764
No 237
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=31.30 E-value=35 Score=21.18 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=10.2
Q ss_pred hhhcCCCEEecc
Q 043097 48 SMAAYKPVIACD 59 (134)
Q Consensus 48 Ama~G~pvi~s~ 59 (134)
|.+.|+|.|.-.
T Consensus 96 a~AlgKplI~lh 107 (141)
T PF11071_consen 96 AAALGKPLITLH 107 (141)
T ss_pred HHHcCCCeEEec
Confidence 899999998853
No 238
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=30.28 E-value=1.2e+02 Score=17.95 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043097 82 EFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAY 127 (134)
Q Consensus 82 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 127 (134)
++.++=..++.||.....+.......-.-.+.|....+++...|+.
T Consensus 68 ~If~ah~~~L~D~~l~~~v~~~I~~~~~Ae~Av~~~~~~~~~~f~~ 113 (123)
T PF05524_consen 68 AIFEAHLMMLEDPELIDEVEELIREGKNAEYAVQEVIEEYIEQFEA 113 (123)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 5555555666777666665444333222345556666666655554
No 239
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.94 E-value=23 Score=22.08 Aligned_cols=22 Identities=45% Similarity=0.489 Sum_probs=17.1
Q ss_pred hhhcCCCEE-eccCCCcccceee
Q 043097 48 SMAAYKPVI-ACDSGGPVETIKN 69 (134)
Q Consensus 48 Ama~G~pvi-~s~~~~~~e~i~~ 69 (134)
-...|+|+| +||+...++.++.
T Consensus 72 I~~~G~PviVAtDV~p~P~~V~K 94 (138)
T PF04312_consen 72 ISEYGKPVIVATDVSPPPETVKK 94 (138)
T ss_pred HHHcCCEEEEEecCCCCcHHHHH
Confidence 678999995 5798888887654
No 240
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.88 E-value=2.1e+02 Score=20.46 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=21.8
Q ss_pred hhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhc
Q 043097 48 SMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ 92 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~ 92 (134)
....|+|+|.-+..... .....+..+ +.+....+.+.+++
T Consensus 133 l~~~~~P~V~i~~~~~~----~~~~~V~~D-n~~~~~~a~~~L~~ 172 (333)
T COG1609 133 LAAAGIPVVVIDRSPPG----LGVPSVGID-NFAGAYLATEHLIE 172 (333)
T ss_pred HHhcCCCEEEEeCCCcc----CCCCEEEEC-hHHHHHHHHHHHHH
Confidence 44459999987664321 122223333 56666666666655
No 241
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=48 Score=21.64 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHhcCHHHHHH
Q 043097 79 TPQEFSLSMAKLIQEPQMAKK 99 (134)
Q Consensus 79 ~~~~l~~~i~~~~~~~~~~~~ 99 (134)
++++|-+.+.+.+-+...|..
T Consensus 158 epd~LFetisQa~Lna~DRDa 178 (204)
T KOG0180|consen 158 EPDELFETISQALLNAVDRDA 178 (204)
T ss_pred CHHHHHHHHHHHHHhHhhhhh
Confidence 567777766666655444443
No 242
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=29.44 E-value=1.4e+02 Score=20.06 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=24.9
Q ss_pred cceEeecCc--cchhhHHHHHHHHHHcCCCCeEEeccc
Q 043097 2 ADVILVNSK--FTATTFANTFKKLHARGIHPVVLYPAV 37 (134)
Q Consensus 2 a~~v~~~s~--~~~~~~~~~~~~~~~~~~~~~v~~~g~ 37 (134)
+|.++++.. .+.+...++.+.+++..--+.++|||.
T Consensus 25 tDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 25 TDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred CCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 588888744 466666666777776444578889985
No 243
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=29.26 E-value=1.8e+02 Score=19.51 Aligned_cols=57 Identities=7% Similarity=0.152 Sum_probs=36.9
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC---CchhhhhcCCCEEeccCC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD---KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~eAma~G~pvi~s~~~ 61 (134)
++.|+.+.......++...+.+. ..|.++..|.....++ .+..|...|.|+|.-+..
T Consensus 148 P~Vv~fgE~lp~~~~~~a~~~~~---~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 148 PDVVLFGEPLPQALLREAIEAAK---EADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred CCEEECCCCCCHHHHHHHHHHHh---cCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 45666665555555555555543 4588899998766655 345577889999776554
No 244
>PF02376 CUT: CUT domain; InterPro: IPR003350 A class, also called ONECUT, of homeodomain proteins. The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain (IPR001356 from INTERPRO), often found downstream of the CUT domain. Proteins display two modes of DNA binding, which hinge on the homeodomain and on the linker that separates it from the cut domain, and two modes of transcriptional stimulation, which hinge on the homeodomain [].; GO: 0003677 DNA binding; PDB: 1WH6_A 2D5V_A 2CSF_A 1X2L_A 2O49_A 2O4A_A 1YSE_A 1S7E_A 1WIZ_A 1WH8_A.
Probab=29.13 E-value=19 Score=20.50 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=14.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHHhcCHHHH
Q 043097 90 LIQEPQMAKKMGENARHHVMESFSTKIF 117 (134)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 117 (134)
++.+|.-...+...+++...+-|+|=..
T Consensus 47 lL~~PKpW~~L~~~gre~y~RM~nWL~~ 74 (87)
T PF02376_consen 47 LLRKPKPWNKLKPKGREPYIRMYNWLSL 74 (87)
T ss_dssp HHHSCCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HhCCCCCHHHcCccccHHHHHHHHHhcC
Confidence 4445544555555555555555555433
No 245
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.02 E-value=2.1e+02 Score=19.96 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=23.6
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVM 109 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 109 (134)
++.++ +...+++.|...+. +|.....+.+|+.++..
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 161 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNA 161 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHH
Confidence 44444 56666666666655 78887777777776664
No 246
>PRK12362 germination protease; Provisional
Probab=27.63 E-value=69 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=8.0
Q ss_pred hhhcCCCEEeccCC
Q 043097 48 SMAAYKPVIACDSG 61 (134)
Q Consensus 48 Ama~G~pvi~s~~~ 61 (134)
.-..|+|||+-.++
T Consensus 216 ~etLGVPVIAIGVP 229 (318)
T PRK12362 216 EETLGVPVIAIGVP 229 (318)
T ss_pred HHHcCCCEEEEcCC
Confidence 44556666665444
No 247
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.15 E-value=51 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=32.0
Q ss_pred hhhcCCCEEeccCCCcccceee--CceEEEecCCHHHHHHH
Q 043097 48 SMAAYKPVIACDSGGPVETIKN--EVVGFLCNPTPQEFSLS 86 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~e~i~~--~~~g~~~~~~~~~l~~~ 86 (134)
+|..|.+.|+|--|...|+.+. +.+++++..+.++..+.
T Consensus 650 ~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~ 690 (797)
T cd04300 650 FMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEAL 690 (797)
T ss_pred HHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHHHHH
Confidence 9999999999988888888765 67899998766666553
No 248
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.12 E-value=1.7e+02 Score=19.20 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=29.6
Q ss_pred EEecC-CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043097 74 FLCNP-TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLA 126 (134)
Q Consensus 74 ~~~~~-~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 126 (134)
++.++ +...+++.|...+. +|.....+.+|+.++..+ ++..-+.+.+.+.
T Consensus 110 ~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---l~~l~~~~~~~l~ 162 (203)
T cd01145 110 VWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAK---LNKLLREWERQFE 162 (203)
T ss_pred eecCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 34444 66677777766665 787777777777665542 3444444444443
No 249
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=26.76 E-value=1.9e+02 Score=19.88 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=29.5
Q ss_pred hhhcCCCEEec----cCCCcccceeeCceEEEecC--CHHHHHHHHHHHhc
Q 043097 48 SMAAYKPVIAC----DSGGPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQ 92 (134)
Q Consensus 48 Ama~G~pvi~s----~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~ 92 (134)
+-+.|+++++- +...+...+.-+-.|++++. ++++..+.+....-
T Consensus 58 ~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 58 LKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred HhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 45688888874 22234445667888999988 67777776655443
No 250
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.33 E-value=1.7e+02 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHh
Q 043097 79 TPQEFSLSMAKLI 91 (134)
Q Consensus 79 ~~~~l~~~i~~~~ 91 (134)
+++++.+.+++.+
T Consensus 120 ~~~~iv~~l~~~~ 132 (134)
T TIGR01501 120 PPEVVIADLKKDL 132 (134)
T ss_pred CHHHHHHHHHHHh
Confidence 5667766665543
No 251
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=25.92 E-value=2.3e+02 Score=20.27 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.7
Q ss_pred CchhhhhcCCCEEeccCCC
Q 043097 44 KPHSSMAAYKPVIACDSGG 62 (134)
Q Consensus 44 ~~~eAma~G~pvi~s~~~~ 62 (134)
+++||.+.|+||.+-...+
T Consensus 241 MvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 241 MVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHHHcCCCEEEecCCC
Confidence 5778999999998876664
No 252
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=25.77 E-value=1.6e+02 Score=22.34 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCCeEEeccc------cccccCCchhhhhcCCCEEeccCCCcccc------eeeCceEEEecC-CHHHH
Q 043097 17 ANTFKKLHARGIHPVVLYPAV------NVYQFDKPHSSMAAYKPVIACDSGGPVET------IKNEVVGFLCNP-TPQEF 83 (134)
Q Consensus 17 ~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~eAma~G~pvi~s~~~~~~e~------i~~~~~g~~~~~-~~~~l 83 (134)
++++.....+..+|..++||+ +.++-..+..-.....|+|+|+-....|. ..-+..|++... +|+.=
T Consensus 21 ~~L~~~~~~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~Q 100 (503)
T KOG2550|consen 21 QELFDSKIGLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQ 100 (503)
T ss_pred HHHhhcccCccccceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHH
Confidence 556766666788899999997 12222233345666779998876544441 112445677665 66666
Q ss_pred HHHHHHH
Q 043097 84 SLSMAKL 90 (134)
Q Consensus 84 ~~~i~~~ 90 (134)
+..+.++
T Consensus 101 A~~v~~v 107 (503)
T KOG2550|consen 101 ADMVRRV 107 (503)
T ss_pred HHHHHHH
Confidence 6655543
No 253
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=25.54 E-value=1.7e+02 Score=22.38 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=40.3
Q ss_pred cCCCCeEEecccc------ccccCCchhhhhcCCCEEeccCCCcc--cc----eeeCceEEEecC-CHHHHHHHHHHHh
Q 043097 26 RGIHPVVLYPAVN------VYQFDKPHSSMAAYKPVIACDSGGPV--ET----IKNEVVGFLCNP-TPQEFSLSMAKLI 91 (134)
Q Consensus 26 ~~~~~~v~~~g~~------~~~~~~~~eAma~G~pvi~s~~~~~~--e~----i~~~~~g~~~~~-~~~~l~~~i~~~~ 91 (134)
+..+|.++.|+.. .+.-..+.+.+....|+|.++-.... ++ -..+..|++... ++++..+.+.++.
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk 87 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVK 87 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhh
Confidence 4567777888752 22222455688889999998544332 22 234556676654 6777777666554
No 254
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.35 E-value=1.1e+02 Score=21.53 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=33.8
Q ss_pred CeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhc
Q 043097 30 PVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQ 92 (134)
Q Consensus 30 ~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~ 92 (134)
+.++-.|-|-...-....+...++|++.-+.| ..|++.+.+++++.+.+.+++.
T Consensus 44 d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G---------~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 44 QLAIVIGGDGNMLGRARVLAKYDIPLIGINRG---------NLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred CEEEEECCcHHHHHHHHHhccCCCcEEEEeCC---------CCcccccCCHHHHHHHHHHHHh
Confidence 44555555544433333344567888876553 3577776678888888887775
No 255
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=25.07 E-value=1.9e+02 Score=20.06 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=11.9
Q ss_pred hhhhhcCCCEEeccCC
Q 043097 46 HSSMAAYKPVIACDSG 61 (134)
Q Consensus 46 ~eAma~G~pvi~s~~~ 61 (134)
.++...|.|||.-+..
T Consensus 73 ~~~~~~~iPvV~~d~~ 88 (302)
T TIGR02634 73 QEAKDEGIKVVAYDRL 88 (302)
T ss_pred HHHHHCCCeEEEecCc
Confidence 3467889999987653
No 256
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.62 E-value=1.5e+02 Score=16.86 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=10.6
Q ss_pred hhhcCCCEEeccCCCcc
Q 043097 48 SMAAYKPVIACDSGGPV 64 (134)
Q Consensus 48 Ama~G~pvi~s~~~~~~ 64 (134)
|-..|+|++.++..+..
T Consensus 71 akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 71 AKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHcCCcEEEECCCCHH
Confidence 66667777776644443
No 257
>PF09016 Pas_Saposin: Pas factor saposin fold; InterPro: IPR015106 Members of this entry adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase []. ; PDB: 2B8I_A.
Probab=24.61 E-value=1.3e+02 Score=16.40 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 043097 83 FSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYVA 129 (134)
Q Consensus 83 l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 129 (134)
+++.+..+.+ +|++-.+++++.++.. ..++++...-|..++.-+.
T Consensus 5 IYdTL~~LA~~ePeqhA~IRQ~LYeqL--dLpFdKQlaLYs~~LGPaS 50 (76)
T PF09016_consen 5 IYDTLINLANQEPEQHAQIRQNLYEQL--DLPFDKQLALYSCALGPAS 50 (76)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHHHHH-----HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHc--CCcHHHHHHHHHHhcCccc
Confidence 4556666666 6777888888888766 4566655555555444433
No 258
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.58 E-value=2.2e+02 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=11.5
Q ss_pred hhhhhcCCCEEeccCC
Q 043097 46 HSSMAAYKPVIACDSG 61 (134)
Q Consensus 46 ~eAma~G~pvi~s~~~ 61 (134)
.++...|+|+|..+..
T Consensus 75 ~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 75 RKAKQAGIPVVITNSN 90 (275)
T ss_pred HHHHHCCCcEEEeCCC
Confidence 3456789999987653
No 259
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.44 E-value=1.6e+02 Score=19.34 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=26.2
Q ss_pred hhhhcCCCEEec-----cCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 47 SSMAAYKPVIAC-----DSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 47 eAma~G~pvi~s-----~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
|.|.+++|+|++ ..+...++-..+..-++..+ +-+.+...+..++.
T Consensus 125 ~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 125 EVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred HHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHhc
Confidence 499999999996 23344444333332232444 55666665555543
No 260
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.26 E-value=1.2e+02 Score=21.41 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=25.7
Q ss_pred hhcCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 49 MAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 49 ma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
...++|++.-+. |..|++.+.+++++.+.+++++..
T Consensus 85 ~~~~~PilGIN~---------G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 85 AEYDKFVLGIHA---------GHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCCCcEEEEeC---------CCcccCCcCCHHHHHHHHHHHHcC
Confidence 334677776554 345777776889999999888764
No 261
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.76 E-value=2.6e+02 Score=19.61 Aligned_cols=45 Identities=4% Similarity=-0.151 Sum_probs=29.2
Q ss_pred hhhcCCCEEecc----CCCcccceeeCceEEEecC--CHHHHHHHHHHHhc
Q 043097 48 SMAAYKPVIACD----SGGPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQ 92 (134)
Q Consensus 48 Ama~G~pvi~s~----~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~ 92 (134)
+-+.|+++++-- ...+...+.-+-.|++++. ++++..+.+....-
T Consensus 64 ~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 64 IAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred HHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 556888887742 2233345666888999998 57777666655443
No 262
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=23.59 E-value=52 Score=21.07 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=11.2
Q ss_pred hhhhhcCCCEEec
Q 043097 46 HSSMAAYKPVIAC 58 (134)
Q Consensus 46 ~eAma~G~pvi~s 58 (134)
.+|++.|+||++.
T Consensus 117 ~~A~~~giPVLt~ 129 (159)
T PF10649_consen 117 AAALAAGIPVLTA 129 (159)
T ss_pred HHHHHCCCCEEEE
Confidence 3499999999986
No 263
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.36 E-value=2.2e+02 Score=19.69 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=29.1
Q ss_pred hhhcCCCEEec----cCCCcccceeeCceEEEecC--CHHHHHHHHHHHhc
Q 043097 48 SMAAYKPVIAC----DSGGPVETIKNEVVGFLCNP--TPQEFSLSMAKLIQ 92 (134)
Q Consensus 48 Ama~G~pvi~s----~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~~~~ 92 (134)
+-..|+++++- +...+...+.-+-.|++++. ++++..+.+....-
T Consensus 65 ~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 65 LKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred HhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 44678888874 22233445666788999987 67777776655443
No 264
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.26 E-value=2.5e+02 Score=19.10 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 83 FSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 83 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
+.+.+.++..+-.+.....++-++.+ ..|..+.++..++.++.++
T Consensus 89 l~d~llR~~AE~eN~RkR~~rE~e~~-~~~a~~~~~~~LLpVlDnL 133 (218)
T PRK14164 89 RTEDLQRVTAEYANYRRRTERERQAI-IETAKAGVATDLLPILDDL 133 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHhHH
Confidence 33444444444333333333444434 5688888888888777654
No 265
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=23.20 E-value=97 Score=16.76 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHHHH
Q 043097 79 TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKIFG 118 (134)
Q Consensus 79 ~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 118 (134)
+++.-...+.+.+. ++...+++.+.++..-.+.|+...+.
T Consensus 20 ~~~sA~r~L~rwI~~~~~L~~~L~~~Gy~~~~r~~TP~QV~ 60 (69)
T PF14053_consen 20 TPSSAVRKLRRWIRRNPELLEELEATGYHPRQRSFTPRQVR 60 (69)
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHcCCCCCCEecCHHHHH
Confidence 56666666766666 88888888888876655667766443
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=1e+02 Score=24.43 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=32.2
Q ss_pred hhhcCCCEEe-ccCCCcccceee---CceEEEecC--C--HHHHHH---HHHHHhcCHHHHHHHHHH
Q 043097 48 SMAAYKPVIA-CDSGGPVETIKN---EVVGFLCNP--T--PQEFSL---SMAKLIQEPQMAKKMGEN 103 (134)
Q Consensus 48 Ama~G~pvi~-s~~~~~~e~i~~---~~~g~~~~~--~--~~~l~~---~i~~~~~~~~~~~~~~~~ 103 (134)
.-..|.|+|+ ||+...++++.. ..+..++.| | +++=.+ ....-.+|+.+|..+..+
T Consensus 284 I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA 350 (652)
T COG2433 284 ISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAA 350 (652)
T ss_pred HHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHH
Confidence 7789999965 799999998754 222333333 2 222222 222223377778877654
No 267
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=22.97 E-value=2e+02 Score=18.44 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=6.2
Q ss_pred CHHHHHHHHHH
Q 043097 79 TPQEFSLSMAK 89 (134)
Q Consensus 79 ~~~~l~~~i~~ 89 (134)
.|+.+++.+-.
T Consensus 100 ~Pd~v~~qVp~ 110 (157)
T PF05591_consen 100 HPDAVAEQVPE 110 (157)
T ss_pred CHHHHHHhhHH
Confidence 36666665543
No 268
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=22.86 E-value=2.8e+02 Score=19.49 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=48.1
Q ss_pred cceEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC---CchhhhhcCCCEEeccCCCcccceeeCceEEEecC
Q 043097 2 ADVILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD---KPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP 78 (134)
Q Consensus 2 a~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~---~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~ 78 (134)
++.|+.+.......+....+.+. ..+.+++.|.....++ .+..|...|.|+|.-+..... . +....+.+..
T Consensus 191 P~Vv~FgE~lp~~~~~~a~~~~~---~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~--~-~~~~~~~i~g 264 (285)
T PRK05333 191 PDVVFFGENVPRERVAAARAALD---AADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR--A-DPLLTLKVEA 264 (285)
T ss_pred CCEEEcCCCCCHHHHHHHHHHHh---cCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCC--C-CcceeEEEeC
Confidence 45666665555555555555554 3688999998877765 244566788899887654211 1 1222344444
Q ss_pred CHHHHHHHHHH
Q 043097 79 TPQEFSLSMAK 89 (134)
Q Consensus 79 ~~~~l~~~i~~ 89 (134)
+..+....|.+
T Consensus 265 ~~~evL~~l~~ 275 (285)
T PRK05333 265 SCAQALAALVA 275 (285)
T ss_pred CHHHHHHHHHH
Confidence 66665555533
No 269
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.86 E-value=2.8e+02 Score=19.14 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=38.2
Q ss_pred eEeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccCCchhhhhcCCCEEeccCCCcccceeeCceEEEecCCHHHH
Q 043097 4 VILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFDKPHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNPTPQEF 83 (134)
Q Consensus 4 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l 83 (134)
+++.+++...+.. +..+.+.+...+- +++.+...+ ..........|.|+|.-+...-.. .+...+.++ +.+.-
T Consensus 34 l~l~~t~~~~~~e-~~i~~l~~~~vDG-iI~~s~~~~-~~~l~~~~~~~iPvV~~~~~~~~~---~~~~~V~~D-~~~a~ 106 (279)
T PF00532_consen 34 LLLCNTGDDEEKE-EYIELLLQRRVDG-IILASSEND-DEELRRLIKSGIPVVLIDRYIDNP---EGVPSVYID-NYEAG 106 (279)
T ss_dssp EEEEEETTTHHHH-HHHHHHHHTTSSE-EEEESSSCT-CHHHHHHHHTTSEEEEESS-SCTT---CTSCEEEEE-HHHHH
T ss_pred EEEecCCCchHHH-HHHHHHHhcCCCE-EEEecccCC-hHHHHHHHHcCCCEEEEEeccCCc---ccCCEEEEc-chHHH
Confidence 3444444444443 4444555544433 333344333 222223445599999987652221 111123333 55566
Q ss_pred HHHHHHHhc
Q 043097 84 SLSMAKLIQ 92 (134)
Q Consensus 84 ~~~i~~~~~ 92 (134)
..+.+.++.
T Consensus 107 ~~a~~~Li~ 115 (279)
T PF00532_consen 107 YEATEYLIK 115 (279)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666665
No 270
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.84 E-value=2.6e+02 Score=18.72 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=26.5
Q ss_pred EeecCccchhhHHHHHHHHHHcCCCCeEEeccccccccC-CchhhhhcCCCEEeccCC
Q 043097 5 ILVNSKFTATTFANTFKKLHARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSG 61 (134)
Q Consensus 5 v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~ 61 (134)
++.++........+..+.+...+. +-+++.+...+.+. ...++...|.|+|..+..
T Consensus 33 ~~~~~~~~~~~~~~~i~~l~~~~v-dgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 33 KFADAQQKQENQISAIRSFIAQGV-DVIILAPVVETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCC-CEEEEcCCccccchHHHHHHHHCCCCEEEEecC
Confidence 344443333333333333333344 33334343333221 234567789999997653
No 271
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.84 E-value=1.2e+02 Score=21.44 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=24.0
Q ss_pred cCCCEEeccCCCcccceeeCceEEEecCCHHHHHHHHHHHhcC
Q 043097 51 AYKPVIACDSGGPVETIKNEVVGFLCNPTPQEFSLSMAKLIQE 93 (134)
Q Consensus 51 ~G~pvi~s~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~~~~~ 93 (134)
.++|++.-+.| ..|++.+.+++++.+++.++++.
T Consensus 86 ~~~Pilgin~G---------~lGFl~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 86 YDIKVIGINRG---------NLGFLTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCeEEEEECC---------CCCcccccCHHHHHHHHHHHHcC
Confidence 36677766553 34677666788899999888764
No 272
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=3.2e+02 Score=19.82 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred eCceEEEecC-C----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043097 69 NEVVGFLCNP-T----PQEFSLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLL 125 (134)
Q Consensus 69 ~~~~g~~~~~-~----~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 125 (134)
...+|++.+. . .+.+.+.+++++++++-++.+.+.+..- ...+-+.+...+.+-+
T Consensus 246 ~~wrgvfap~g~~~e~~~~~~~a~kk~l~s~e~~~~~~~~~~~~--~~~~~eel~a~i~~~~ 305 (319)
T COG3181 246 SIWRGVFAPAGTPDEIIAKLSAALKKALASPEWQKRLKELGLVP--SYLTGEELKAYIEKEI 305 (319)
T ss_pred eeeeEEEeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCC--ccCCHHHHHHHHHHHH
Confidence 4566888776 2 5778888888998998877776655431 2345555544444333
No 273
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.56 E-value=2e+02 Score=19.72 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=24.3
Q ss_pred cceEeecCc--cchhhHHHHHHHHHHcCCCCeEEeccc
Q 043097 2 ADVILVNSK--FTATTFANTFKKLHARGIHPVVLYPAV 37 (134)
Q Consensus 2 a~~v~~~s~--~~~~~~~~~~~~~~~~~~~~~v~~~g~ 37 (134)
+|.++|+.. .+.+...++.+.+++. --+.++|||.
T Consensus 33 tdai~vGGS~~vt~~~~~~~v~~ik~~-~lPvilfp~~ 69 (232)
T PRK04169 33 TDAIIVGGSDGVTEENVDELVKAIKEY-DLPVILFPGN 69 (232)
T ss_pred CCEEEEcCCCccchHHHHHHHHHHhcC-CCCEEEeCCC
Confidence 478888854 4555666677777763 3578889985
No 274
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=21.28 E-value=2.6e+02 Score=18.53 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=20.2
Q ss_pred cccceeeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 63 PVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 63 ~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
..+.+.-|-.|++... +++.+.++++.+..
T Consensus 89 v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 89 VIRALRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 3344555666777776 77778888877764
No 275
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.25 E-value=59 Score=17.00 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=11.5
Q ss_pred chhhhhcCCCEEec
Q 043097 45 PHSSMAAYKPVIAC 58 (134)
Q Consensus 45 ~~eAma~G~pvi~s 58 (134)
+.|++-.|.||++=
T Consensus 17 I~esav~G~pVvAL 30 (58)
T PF11238_consen 17 IAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHhcCceeEee
Confidence 56799999999873
No 276
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=21.17 E-value=1.8e+02 Score=16.79 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 96 MAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 96 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
....+..+...++. .|+.-. ..++.++|..+
T Consensus 70 ~~~~l~~~LW~fvs-~fwp~~-~~kL~~mY~ki 100 (100)
T PF13907_consen 70 EPEKLRKHLWSFVS-KFWPNK-GKKLHKMYKKI 100 (100)
T ss_pred hHHHHHHHHHHHHH-HcCCCC-HHHHHHHHHcC
Confidence 45667777787774 666655 88888888753
No 277
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=21.14 E-value=94 Score=18.35 Aligned_cols=50 Identities=2% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhc
Q 043097 81 QEFSLSMAKLIQEPQMAKKMGENARHHVMESF--STKIFGQHLNRLLAYVAR 130 (134)
Q Consensus 81 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~ 130 (134)
.=+..+|..+++|++....+.+..+..+.++| ++..+.+.++..++.++.
T Consensus 19 ~Yl~~Ai~l~~~d~~~l~~itK~LYp~IA~k~~TT~s~VERaIR~aI~~~w~ 70 (106)
T PF08769_consen 19 RYLRDAIELVLEDPELLNSITKELYPDIAKKYGTTPSRVERAIRHAIEVAWT 70 (106)
T ss_dssp HHHHHHHHHHHHTGGGGCCTTTTHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34566677777777655555555555555554 445555566666665554
No 278
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.14 E-value=2.3e+02 Score=21.39 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=40.2
Q ss_pred CCCCeEEecccc------ccccCCchhhhhcCCCEEeccCCCccc--c---e-eeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 27 GIHPVVLYPAVN------VYQFDKPHSSMAAYKPVIACDSGGPVE--T---I-KNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 27 ~~~~~v~~~g~~------~~~~~~~~eAma~G~pvi~s~~~~~~e--~---i-~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
..+|+.+.|+.. .+.-..+.+-.....|+|+++-....| + + ..+..|++... ++++-++.+++++.
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~ 81 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKR 81 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhcc
Confidence 456777777752 233334556888999999986654322 1 1 23446777665 66666666766654
No 279
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.11 E-value=2.2e+02 Score=19.43 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=25.1
Q ss_pred cceEeecCc--cchhhHHHHHHHHHHcCCCCeEEeccc
Q 043097 2 ADVILVNSK--FTATTFANTFKKLHARGIHPVVLYPAV 37 (134)
Q Consensus 2 a~~v~~~s~--~~~~~~~~~~~~~~~~~~~~~v~~~g~ 37 (134)
.|.++++.. .+.+...++.+.+++.. -+.++|||.
T Consensus 28 tdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvilfp~~ 64 (223)
T TIGR01768 28 TDAILIGGSQGVTYEKTDTLIEALRRYG-LPIILFPSN 64 (223)
T ss_pred CCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEEeCCC
Confidence 477888854 45566667777787765 688889985
No 280
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.99 E-value=2.7e+02 Score=18.73 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=23.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 043097 84 SLSMAKLIQEPQMAKKMGENARHHVMESFSTKIFGQHLNRLLAYV 128 (134)
Q Consensus 84 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 128 (134)
.+.+.++..+-++.....++-++.. ..|..+.++..++.++.++
T Consensus 33 kd~~lR~~AefeN~RKR~~kE~e~~-~~~a~~~~~~~LLpV~DnL 76 (208)
T PRK14155 33 KDQALRYAAEAENTKRRAEREMNDA-RAYAIQKFARDLLGAADNL 76 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHhhH
Confidence 3333344443333333333333333 4678888888887777543
No 281
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.97 E-value=2.4e+02 Score=19.72 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHcCCCCeEEeccccccccC-CchhhhhcCCCEEeccCCCcc
Q 043097 15 TFANTFKKLHARGIHPVVLYPAVNVYQFD-KPHSSMAAYKPVIACDSGGPV 64 (134)
Q Consensus 15 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~~-~~~eAma~G~pvi~s~~~~~~ 64 (134)
..+.+...+. .+. +.++..+.+...+. ..-+|...|.|||+-+.....
T Consensus 80 Q~~~i~~~ia-~~~-daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~ 128 (322)
T COG1879 80 QIAQIEDLIA-QGV-DAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPG 128 (322)
T ss_pred HHHHHHHHHH-cCC-CEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCC
Confidence 3344444432 233 33333344444444 344599999999998776443
No 282
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=20.86 E-value=1.6e+02 Score=18.36 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=10.2
Q ss_pred chhhhhcCCCEEeccCCCc
Q 043097 45 PHSSMAAYKPVIACDSGGP 63 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~ 63 (134)
..+.++-|..|++.|..|.
T Consensus 17 ~~~~l~~~~~v~~~d~~G~ 35 (228)
T PF12697_consen 17 LAEALARGYRVIAFDLPGH 35 (228)
T ss_dssp HHHHHHTTSEEEEEECTTS
T ss_pred HHHHHhCCCEEEEEecCCc
Confidence 4444555666666555543
No 283
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=20.81 E-value=1.7e+02 Score=21.61 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=42.5
Q ss_pred chhhhhcCCCEEeccCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCHHH
Q 043097 45 PHSSMAAYKPVIACDSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ-EPQMAKKMGENARHHVMESFSTKI 116 (134)
Q Consensus 45 ~~eAma~G~pvi~s~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~ 116 (134)
-.+++--|=|.|-. . .++++ .|+..+. |..+=+..+.+.+. .....+...+++++.+ ..++..+
T Consensus 287 Y~daLyggYPLVHN-S----~~l~d--~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l-~~~~p~n 352 (364)
T PF10933_consen 287 YYDALYGGYPLVHN-S----PLLKD--VGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLL-DRLSPEN 352 (364)
T ss_pred HHHHHhcCCCcccC-c----chhcc--cCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHH-HhhCCCC
Confidence 34588888887653 2 34543 6888887 87666666666665 5566777888888766 4555544
No 284
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=20.57 E-value=2.7e+02 Score=19.05 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=22.7
Q ss_pred cCCCcccceeeCceEEEecC-CHHHHHHHHHHHhc
Q 043097 59 DSGGPVETIKNEVVGFLCNP-TPQEFSLSMAKLIQ 92 (134)
Q Consensus 59 ~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~~~~ 92 (134)
+...+.+.+..|...++..| .-+.|-+++.++..
T Consensus 85 d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 85 DMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred hHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 34455555656666677777 77888888877654
No 285
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=20.31 E-value=1.5e+02 Score=22.55 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCCEEeccCC-CcccceeeCceEEEecC---CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhcC
Q 043097 52 YKPVIACDSG-GPVETIKNEVVGFLCNP---TPQEFSLSMAKLIQ--EPQMAKKMGENARHHVMESFS 113 (134)
Q Consensus 52 G~pvi~s~~~-~~~e~i~~~~~g~~~~~---~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~s 113 (134)
|+-|+=||.| .+-.+-.+....++++. +-+++++.+.+.+. .++..+++...+|+++++.|.
T Consensus 127 G~ev~ETDLGE~IlQl~~~~PsHIV~PAlH~~reqIa~if~ekl~~~~~~~~eel~~~aR~~lR~kfl 194 (459)
T COG1139 127 GIEVWETDLGELILQLAGEPPSHIVAPALHKNREQIAEIFKEKLGYEGEDTPEELTAAAREFLREKFL 194 (459)
T ss_pred CCeEEEccHHHHHHHhcCCCCcceeccccccCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7777777776 22222333334455554 68888888888776 235667777778877776553
Done!