BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043102
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 65/208 (31%)
Query: 369 HISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------------- 411
++ HYDLS++ F LFLD + TYSCA F+ R+ + L ++ K
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 412 RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------------ 444
GC KY G+TL++ Q + V ++ R+ R
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 445 -----------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS--IPDERYNE-------FR 484
FGHE + FF L+ DG+ +L I+ P E + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189
Query: 485 LSSDFMKEYIFPGGCLPSLSRITSAMSA 512
F+ IFPGG LPS+ + SA
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPMVQECASA 217
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 81/215 (37%), Gaps = 72/215 (33%)
Query: 370 ISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVKR----------------- 412
+ HYD SNE F L+LD S+TYSCA F+ R + L + KR
Sbjct: 20 VRSHYDKSNEFFKLWLDPSMTYSCAYFE-RPDMTLEEAQYAKRKLALDKLNLEPGMTLLD 78
Query: 413 TGCKY---------------TGITLAEKQLKYAGIKVKEADLERN--------------- 442
GC + G+TL+E Q + E D R
Sbjct: 79 IGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138
Query: 443 DR-----SFGH----------EYMEEFFGCCESLIAKDGLFVLQFISIPD-ERYNEFRLS 486
DR +F H E + FF +L DG +L I+IPD E E L+
Sbjct: 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 198
Query: 487 S--------DFMKEYIFPGGCLPSLSRITSAMSAA 513
S F+ IFPGG LP +S++ S A
Sbjct: 199 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNA 233
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 65/208 (31%)
Query: 369 HISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------------- 411
++ HYDLS++ F LFLD + TYSCA F+ R+ L ++ K
Sbjct: 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDXTLQEAQIAKIDLALGKLGLQPGXTLL 69
Query: 412 RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------------ 444
GC KY G+TL++ Q + V ++ R+ R
Sbjct: 70 DVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 445 -----------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS--IPDERYNE-------FR 484
FGHE + FF L+ DG+ +L I+ P E + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSFTFA 189
Query: 485 LSSDFMKEYIFPGGCLPSLSRITSAMSA 512
F+ IFPGG LPS+ + SA
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPXVQECASA 217
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 65/211 (30%)
Query: 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK-------- 411
N LT + HYDLS++ F LFLD + TYSCA F+ RE + L ++ K
Sbjct: 2 VNDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFE-REDMTLEEAQIAKIDLALGKL 60
Query: 412 ---------RTGCKY---------------TGITLAEKQLKYAGIKVKEADLERNDR--- 444
GC + G+TL++ Q + E D R+ R
Sbjct: 61 GLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLL 120
Query: 445 --------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFIS-IPDERYNEF 483
FGH+ +FF ++ DG+ +L I+ + ++ +
Sbjct: 121 AGWEQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITGLTRQQMVDH 180
Query: 484 RLS--------SDFMKEYIFPGGCLPSLSRI 506
L F+ IFPGG P++ +
Sbjct: 181 GLPLTLWLARFLKFIATEIFPGGQPPTIEMV 211
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 77/208 (37%), Gaps = 65/208 (31%)
Query: 363 LTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLGTIEVVK----------- 411
LT ++ HYDLS++ F LFLD + TYSCA F+ R+ + L ++ K
Sbjct: 5 LTPHFGNVQAHYDLSDDFFRLFLDPTQTYSCAYFE-RDDMTLQEAQIAKIDLALGKLNLE 63
Query: 412 ------RTGC-----------KY----TGITLAEKQLKYAGIKVKEADLERNDR------ 444
GC KY G+TL+E Q + + D R+ R
Sbjct: 64 PGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGW 123
Query: 445 -----------------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDER-------- 479
FGH+ FF + DG +L I P +
Sbjct: 124 EKFDEPVDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGLT 183
Query: 480 -YNEFRLSSDFMKEYIFPGGCLPSLSRI 506
+E + F+ IFPGG LPS+ +
Sbjct: 184 LTHELVHFTKFILAEIFPGGWLPSIPTV 211
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 357 ISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIF-----------LG 405
IS T T T+ I HYD+S++ F LF D + TYSCA F+ E+ L
Sbjct: 26 ISPTKTRTR-FEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLD 84
Query: 406 TIEV--------------------VKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--- 442
+++ V+R G+TL++ Q + D R+
Sbjct: 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQV 144
Query: 443 ------------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNE 482
DR FGHE ++FF C +++ DG +Q Y+
Sbjct: 145 LLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ----SSVSYHP 200
Query: 483 FRLSS-------------DFMKEYIFPGGCLPS 502
+ +++ F+ IFPGG LPS
Sbjct: 201 YEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,720,165
Number of Sequences: 62578
Number of extensions: 720684
Number of successful extensions: 1260
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 13
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)