Query 043102
Match_columns 525
No_of_seqs 532 out of 2534
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2907 Predicted NAD/FAD-bind 100.0 1.5E-46 3.2E-51 381.0 14.5 158 112-272 249-426 (447)
2 COG2230 Cfa Cyclopropane fatty 100.0 1.1E-35 2.4E-40 299.5 14.4 162 355-520 5-220 (283)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.5E-35 5.3E-40 298.5 13.2 160 362-522 2-216 (273)
4 PRK11705 cyclopropane fatty ac 100.0 1.2E-31 2.7E-36 283.4 17.2 207 302-520 35-309 (383)
5 PLN02244 tocopherol O-methyltr 99.4 9.9E-13 2.2E-17 137.5 14.2 155 362-521 53-276 (340)
6 COG2226 UbiE Methylase involve 99.4 1.2E-12 2.5E-17 130.5 10.5 158 361-520 11-221 (238)
7 PF01209 Ubie_methyltran: ubiE 99.4 3.3E-13 7.2E-18 134.2 5.7 157 360-518 6-215 (233)
8 PLN02233 ubiquinone biosynthes 99.2 6.3E-11 1.4E-15 119.6 10.7 155 362-519 34-244 (261)
9 smart00828 PKS_MT Methyltransf 99.1 1.4E-09 3.1E-14 106.0 12.4 112 400-522 2-143 (224)
10 TIGR02752 MenG_heptapren 2-hep 99.0 1.2E-09 2.7E-14 107.0 10.9 157 361-520 5-215 (231)
11 KOG1540 Ubiquinone biosynthesi 99.0 1.1E-09 2.4E-14 109.0 10.2 114 364-477 63-219 (296)
12 PLN02396 hexaprenyldihydroxybe 99.0 4E-09 8.6E-14 109.9 12.2 122 396-521 130-287 (322)
13 COG2227 UbiG 2-polyprenyl-3-me 98.9 2.5E-09 5.4E-14 106.0 8.6 118 397-519 59-211 (243)
14 PTZ00098 phosphoethanolamine N 98.9 9.9E-09 2.2E-13 103.8 11.2 119 398-522 53-201 (263)
15 COG3380 Predicted NAD/FAD-depe 98.8 2.1E-09 4.6E-14 107.9 4.7 180 71-267 104-328 (331)
16 PLN02336 phosphoethanolamine N 98.8 3.4E-08 7.4E-13 107.5 11.9 117 398-521 267-412 (475)
17 PF12847 Methyltransf_18: Meth 98.7 2.8E-08 6.1E-13 85.9 7.2 75 398-472 2-111 (112)
18 KOG1270 Methyltransferases [Co 98.7 4.2E-08 9E-13 98.3 8.1 122 399-523 91-249 (282)
19 PRK11207 tellurite resistance 98.7 2.1E-07 4.6E-12 90.0 12.0 109 397-521 30-168 (197)
20 PRK11036 putative S-adenosyl-L 98.7 1.8E-07 3.8E-12 93.8 11.5 119 399-520 46-204 (255)
21 TIGR00477 tehB tellurite resis 98.7 2.1E-07 4.5E-12 89.9 11.5 108 398-521 31-167 (195)
22 TIGR02716 C20_methyl_CrtF C-20 98.6 1.7E-07 3.7E-12 96.4 11.3 116 399-520 151-303 (306)
23 PRK00216 ubiE ubiquinone/menaq 98.6 2.8E-07 6.1E-12 89.8 11.1 157 362-521 12-223 (239)
24 TIGR00740 methyltransferase, p 98.6 2.6E-07 5.6E-12 91.6 10.7 79 398-476 54-165 (239)
25 PRK05785 hypothetical protein; 98.6 8.3E-08 1.8E-12 95.0 7.0 150 362-515 10-205 (226)
26 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.6E-07 7.8E-12 88.1 11.1 154 364-520 2-207 (223)
27 PF08241 Methyltransf_11: Meth 98.5 5.7E-08 1.2E-12 80.5 3.3 67 402-470 1-95 (95)
28 PRK01683 trans-aconitate 2-met 98.5 3E-07 6.5E-12 91.9 9.1 122 398-520 32-184 (258)
29 PRK15451 tRNA cmo(5)U34 methyl 98.5 3.8E-07 8.3E-12 91.2 8.9 78 398-475 57-167 (247)
30 TIGR00452 methyltransferase, p 98.5 2.6E-06 5.7E-11 88.6 14.2 123 396-523 120-273 (314)
31 PRK15068 tRNA mo(5)U34 methylt 98.5 1.9E-06 4.2E-11 89.8 13.2 123 397-523 122-274 (322)
32 PRK11873 arsM arsenite S-adeno 98.5 1.5E-06 3.3E-11 87.7 12.0 120 398-521 78-228 (272)
33 PRK00517 prmA ribosomal protei 98.4 8.4E-07 1.8E-11 89.0 9.1 96 378-474 85-215 (250)
34 PRK14103 trans-aconitate 2-met 98.4 1.1E-06 2.4E-11 88.0 9.8 122 398-520 30-181 (255)
35 TIGR02469 CbiT precorrin-6Y C5 98.4 1.1E-06 2.5E-11 76.6 8.7 77 398-474 20-124 (124)
36 TIGR00562 proto_IX_ox protopor 98.4 6.4E-06 1.4E-10 88.7 16.1 152 112-267 255-457 (462)
37 PRK10258 biotin biosynthesis p 98.4 1.2E-06 2.7E-11 87.2 9.1 153 361-520 7-184 (251)
38 PRK12335 tellurite resistance 98.3 3E-06 6.6E-11 86.6 11.4 106 399-520 122-256 (287)
39 PLN02576 protoporphyrinogen ox 98.3 1.6E-05 3.4E-10 86.7 17.6 152 114-267 274-484 (496)
40 TIGR03840 TMPT_Se_Te thiopurin 98.3 5E-06 1.1E-10 81.9 10.3 107 398-521 35-185 (213)
41 PRK00107 gidB 16S rRNA methylt 98.2 3.7E-06 8.1E-11 81.2 8.3 75 398-472 46-145 (187)
42 PF01596 Methyltransf_3: O-met 98.2 5.4E-06 1.2E-10 81.3 9.3 82 398-479 46-162 (205)
43 PF03848 TehB: Tellurite resis 98.2 3.1E-06 6.7E-11 82.2 7.3 82 394-476 27-137 (192)
44 COG4122 Predicted O-methyltran 98.2 3.5E-06 7.5E-11 83.3 7.7 79 399-477 61-171 (219)
45 PF01593 Amino_oxidase: Flavin 98.2 3.7E-06 7.9E-11 86.8 8.3 81 79-171 220-306 (450)
46 TIGR02021 BchM-ChlM magnesium 98.2 4.4E-06 9.4E-11 81.7 8.3 116 396-521 54-204 (219)
47 PF13489 Methyltransf_23: Meth 98.2 3.7E-06 8E-11 76.7 6.9 112 398-520 23-160 (161)
48 PLN02585 magnesium protoporphy 98.1 1.5E-05 3.3E-10 83.0 11.2 114 398-521 145-297 (315)
49 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.8E-05 3.9E-10 83.2 11.5 112 399-521 115-254 (340)
50 PRK00377 cbiT cobalt-precorrin 98.1 1.2E-05 2.7E-10 77.6 9.5 77 397-473 40-146 (198)
51 PLN02232 ubiquinone biosynthes 98.1 7.3E-06 1.6E-10 76.8 7.5 97 418-518 1-142 (160)
52 PRK13255 thiopurine S-methyltr 98.1 2.8E-05 6.1E-10 76.9 11.6 105 398-522 38-189 (218)
53 TIGR00138 gidB 16S rRNA methyl 98.1 1E-05 2.2E-10 77.6 8.0 74 398-471 43-141 (181)
54 PRK08287 cobalt-precorrin-6Y C 98.1 1.4E-05 3E-10 76.3 8.6 77 398-474 32-133 (187)
55 PRK07402 precorrin-6B methylas 98.1 1.6E-05 3.4E-10 76.6 8.7 77 398-474 41-144 (196)
56 PRK11883 protoporphyrinogen ox 98.0 0.00011 2.4E-09 78.4 15.9 150 112-267 251-449 (451)
57 TIGR00406 prmA ribosomal prote 98.0 1.3E-05 2.8E-10 82.2 7.8 75 399-474 161-261 (288)
58 TIGR00080 pimt protein-L-isoas 98.0 4.8E-06 1E-10 81.4 4.4 105 397-503 77-208 (215)
59 PRK08317 hypothetical protein; 98.0 4E-05 8.8E-10 74.2 10.4 121 397-519 19-172 (241)
60 TIGR00537 hemK_rel_arch HemK-r 98.0 6.8E-05 1.5E-09 71.1 11.4 76 397-473 19-141 (179)
61 PF13847 Methyltransf_31: Meth 98.0 2.1E-05 4.7E-10 72.3 7.7 76 399-474 5-112 (152)
62 PF13649 Methyltransf_25: Meth 98.0 8.9E-06 1.9E-10 69.7 4.8 66 401-466 1-101 (101)
63 PRK05134 bifunctional 3-demeth 98.0 6.9E-05 1.5E-09 73.6 11.5 121 398-521 49-203 (233)
64 PLN02476 O-methyltransferase 98.0 7.4E-05 1.6E-09 76.5 11.9 81 398-478 119-234 (278)
65 PLN02781 Probable caffeoyl-CoA 98.0 6.4E-05 1.4E-09 75.0 11.2 80 397-476 68-182 (234)
66 PRK12416 protoporphyrinogen ox 97.9 0.00027 5.9E-09 76.5 16.5 147 112-267 256-458 (463)
67 TIGR01983 UbiG ubiquinone bios 97.9 9.9E-05 2.1E-09 71.8 10.9 120 398-519 46-199 (224)
68 PRK07580 Mg-protoporphyrin IX 97.8 7.3E-05 1.6E-09 73.0 9.3 114 398-521 64-212 (230)
69 PF08242 Methyltransf_12: Meth 97.8 2.3E-06 5E-11 72.8 -1.2 65 402-468 1-99 (99)
70 TIGR00091 tRNA (guanine-N(7)-) 97.8 3.8E-05 8.3E-10 74.1 6.7 75 399-473 18-133 (194)
71 PRK07233 hypothetical protein; 97.8 0.00052 1.1E-08 72.7 15.8 149 112-267 230-428 (434)
72 PLN02589 caffeoyl-CoA O-methyl 97.8 7.8E-05 1.7E-09 75.2 8.1 80 398-477 80-195 (247)
73 PRK13944 protein-L-isoaspartat 97.7 6E-05 1.3E-09 73.4 6.9 75 397-472 72-173 (205)
74 PRK14968 putative methyltransf 97.7 0.00027 5.9E-09 66.4 11.0 74 398-472 24-148 (188)
75 PLN03075 nicotianamine synthas 97.7 0.0001 2.2E-09 76.1 8.3 76 397-472 123-233 (296)
76 PRK06202 hypothetical protein; 97.7 9E-05 1.9E-09 73.1 7.6 118 399-520 62-219 (232)
77 PRK00121 trmB tRNA (guanine-N( 97.7 8.4E-05 1.8E-09 72.3 7.2 74 399-472 42-156 (202)
78 TIGR03467 HpnE squalene-associ 97.7 0.00018 3.8E-09 75.7 9.7 47 118-167 236-287 (419)
79 PRK04266 fibrillarin; Provisio 97.7 0.0003 6.4E-09 70.0 10.5 75 397-471 72-175 (226)
80 PF13659 Methyltransf_26: Meth 97.7 9E-05 2E-09 64.5 5.9 71 400-471 3-114 (117)
81 TIGR03438 probable methyltrans 97.6 0.00015 3.2E-09 74.9 8.3 78 399-476 65-181 (301)
82 PRK06922 hypothetical protein; 97.6 0.00012 2.6E-09 82.4 8.0 81 396-476 417-541 (677)
83 KOG1541 Predicted protein carb 97.6 6E-05 1.3E-09 74.3 5.0 75 400-474 53-162 (270)
84 TIGR02072 BioC biotin biosynth 97.6 0.00025 5.4E-09 68.8 9.1 108 398-513 35-168 (240)
85 PRK13942 protein-L-isoaspartat 97.6 6.1E-05 1.3E-09 73.8 4.8 75 397-472 76-176 (212)
86 PF08003 Methyltransf_9: Prote 97.6 0.00063 1.4E-08 70.3 11.3 121 398-523 116-267 (315)
87 PRK15001 SAM-dependent 23S rib 97.5 0.00028 6E-09 75.4 8.7 123 374-522 213-372 (378)
88 COG4123 Predicted O-methyltran 97.5 0.00019 4E-09 72.3 6.8 72 399-470 46-168 (248)
89 TIGR03533 L3_gln_methyl protei 97.5 0.00024 5.3E-09 72.9 7.8 73 399-471 123-250 (284)
90 PRK14967 putative methyltransf 97.5 0.00077 1.7E-08 66.3 11.0 76 398-474 37-161 (223)
91 PRK07208 hypothetical protein; 97.5 0.0052 1.1E-07 66.8 18.3 181 76-270 226-461 (479)
92 PRK09489 rsmC 16S ribosomal RN 97.5 0.00024 5.2E-09 74.9 7.6 74 399-472 198-303 (342)
93 PLN02336 phosphoethanolamine N 97.5 0.00037 8.1E-09 76.0 9.2 78 398-476 38-146 (475)
94 COG4106 Tam Trans-aconitate me 97.4 0.00053 1.2E-08 67.6 8.6 120 400-520 33-183 (257)
95 PRK11805 N5-glutamine S-adenos 97.4 0.00037 8E-09 72.4 7.9 73 399-471 135-262 (307)
96 PLN02268 probable polyamine ox 97.4 0.0044 9.6E-08 66.5 16.2 59 112-170 228-294 (435)
97 PF05175 MTS: Methyltransferas 97.4 0.0003 6.5E-09 66.4 6.0 74 397-470 31-138 (170)
98 PRK00312 pcm protein-L-isoaspa 97.3 0.00025 5.3E-09 69.1 5.2 105 398-503 79-207 (212)
99 smart00138 MeTrc Methyltransfe 97.3 0.00029 6.2E-09 71.6 5.7 72 400-471 102-241 (264)
100 PRK14121 tRNA (guanine-N(7)-)- 97.3 0.00044 9.5E-09 74.0 7.3 75 399-473 124-236 (390)
101 PRK04457 spermidine synthase; 97.3 0.00044 9.6E-09 70.2 7.1 77 399-475 68-180 (262)
102 COG2519 GCD14 tRNA(1-methylade 97.3 0.00079 1.7E-08 67.8 8.0 83 393-475 90-198 (256)
103 KOG1271 Methyltransferases [Ge 97.3 0.00034 7.4E-09 67.3 5.0 77 400-476 70-185 (227)
104 TIGR03587 Pse_Me-ase pseudamin 97.3 0.0005 1.1E-08 67.2 6.3 77 398-476 44-146 (204)
105 TIGR02732 zeta_caro_desat caro 97.3 0.001 2.2E-08 72.9 9.4 53 212-267 416-474 (474)
106 PF05724 TPMT: Thiopurine S-me 97.2 0.00048 1E-08 68.2 5.6 107 399-522 39-189 (218)
107 TIGR00563 rsmB ribosomal RNA s 97.2 0.0014 3.1E-08 70.9 9.6 79 398-476 239-372 (426)
108 PRK11088 rrmA 23S rRNA methylt 97.2 0.0002 4.4E-09 72.6 2.8 73 399-472 87-181 (272)
109 COG2242 CobL Precorrin-6B meth 97.2 0.0018 3.8E-08 62.6 8.8 81 397-477 34-140 (187)
110 TIGR00536 hemK_fam HemK family 97.2 0.0012 2.6E-08 67.6 8.1 73 399-471 116-243 (284)
111 TIGR01177 conserved hypothetic 97.1 0.0015 3.2E-08 68.3 8.7 75 398-473 183-295 (329)
112 PLN02612 phytoene desaturase 97.1 0.0092 2E-07 67.0 15.5 79 79-167 319-403 (567)
113 PF06325 PrmA: Ribosomal prote 97.1 0.00039 8.4E-09 71.9 3.9 76 399-475 163-262 (295)
114 PRK00811 spermidine synthase; 97.1 0.0015 3.2E-08 67.1 7.9 75 399-473 78-192 (283)
115 KOG1663 O-methyltransferase [S 97.1 0.0017 3.7E-08 64.5 7.8 80 398-477 74-188 (237)
116 PRK01544 bifunctional N5-gluta 97.1 0.0013 2.9E-08 72.7 7.8 73 399-471 140-268 (506)
117 PRK13256 thiopurine S-methyltr 97.0 0.0015 3.2E-08 65.2 6.9 75 399-474 45-165 (226)
118 KOG4300 Predicted methyltransf 97.0 0.001 2.2E-08 65.3 5.3 78 400-477 79-187 (252)
119 KOG2899 Predicted methyltransf 97.0 0.0015 3.3E-08 65.4 6.6 42 394-435 55-103 (288)
120 COG4976 Predicted methyltransf 97.0 0.00042 9.1E-09 68.8 2.7 146 367-523 84-265 (287)
121 COG1092 Predicted SAM-dependen 97.0 0.0016 3.4E-08 69.9 7.0 92 382-474 200-338 (393)
122 PRK14904 16S rRNA methyltransf 96.9 0.0021 4.5E-08 70.0 7.9 79 398-476 251-381 (445)
123 TIGR03534 RF_mod_PrmC protein- 96.9 0.0022 4.7E-08 63.3 7.3 73 399-471 89-216 (251)
124 TIGR02731 phytoene_desat phyto 96.9 0.011 2.4E-07 63.9 13.1 32 235-266 418-452 (453)
125 PRK14903 16S rRNA methyltransf 96.9 0.0028 6E-08 68.9 8.3 79 398-476 238-370 (431)
126 PRK10901 16S rRNA methyltransf 96.9 0.0027 5.9E-08 68.8 8.2 78 398-475 245-375 (427)
127 PRK03612 spermidine synthase; 96.9 0.0046 9.9E-08 68.8 10.1 73 400-472 300-415 (521)
128 PLN02366 spermidine synthase 96.9 0.0027 6E-08 66.1 7.8 75 399-473 93-207 (308)
129 PLN02529 lysine-specific histo 96.9 0.023 4.9E-07 65.8 15.8 59 111-170 383-449 (738)
130 COG2264 PrmA Ribosomal protein 96.9 0.003 6.6E-08 65.3 7.9 74 400-474 165-265 (300)
131 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.0022 4.8E-08 73.7 7.5 74 398-472 539-656 (702)
132 KOG1269 SAM-dependent methyltr 96.8 0.0012 2.5E-08 70.3 4.7 128 365-494 56-236 (364)
133 PLN02487 zeta-carotene desatur 96.8 0.0045 9.8E-08 69.6 9.6 34 237-270 517-553 (569)
134 PRK15128 23S rRNA m(5)C1962 me 96.8 0.0025 5.5E-08 68.5 7.3 76 397-473 220-340 (396)
135 PRK13943 protein-L-isoaspartat 96.8 0.0031 6.8E-08 66.0 7.3 73 397-472 80-180 (322)
136 PRK01581 speE spermidine synth 96.8 0.0031 6.7E-08 67.0 7.2 74 400-473 153-269 (374)
137 PRK14902 16S rRNA methyltransf 96.8 0.0041 8.9E-08 67.6 8.3 78 398-475 251-382 (444)
138 TIGR00446 nop2p NOL1/NOP2/sun 96.7 0.0055 1.2E-07 62.2 8.6 79 398-476 72-203 (264)
139 PRK09328 N5-glutamine S-adenos 96.7 0.0035 7.6E-08 63.0 7.1 72 399-471 110-237 (275)
140 cd02440 AdoMet_MTases S-adenos 96.7 0.0056 1.2E-07 49.7 6.7 72 400-471 1-103 (107)
141 PLN02328 lysine-specific histo 96.7 0.03 6.6E-07 65.3 14.9 59 111-170 463-529 (808)
142 PTZ00146 fibrillarin; Provisio 96.6 0.016 3.6E-07 59.8 11.0 73 398-470 133-235 (293)
143 PRK14966 unknown domain/N5-glu 96.6 0.0046 9.9E-08 66.8 7.2 40 399-438 253-299 (423)
144 PF10672 Methyltrans_SAM: S-ad 96.6 0.0039 8.5E-08 64.3 6.0 78 395-473 121-239 (286)
145 TIGR02081 metW methionine bios 96.5 0.0097 2.1E-07 57.1 8.2 117 399-522 15-166 (194)
146 COG2890 HemK Methylase of poly 96.5 0.0071 1.5E-07 62.1 7.6 73 400-472 113-238 (280)
147 TIGR03704 PrmC_rel_meth putati 96.4 0.0081 1.8E-07 60.6 6.9 72 400-471 89-215 (251)
148 PLN02976 amine oxidase 96.3 0.054 1.2E-06 66.3 14.4 60 111-170 972-1039(1713)
149 COG2521 Predicted archaeal met 96.3 0.0057 1.2E-07 61.1 5.2 101 399-519 136-273 (287)
150 PF02390 Methyltransf_4: Putat 96.3 0.0069 1.5E-07 58.9 5.7 73 400-472 20-133 (195)
151 TIGR00417 speE spermidine synt 96.3 0.012 2.5E-07 59.9 7.4 74 399-472 74-186 (270)
152 PRK14901 16S rRNA methyltransf 96.2 0.015 3.2E-07 63.2 8.4 78 398-475 253-387 (434)
153 COG2518 Pcm Protein-L-isoaspar 96.2 0.0081 1.8E-07 59.1 5.7 99 399-501 74-200 (209)
154 PRK11188 rrmJ 23S rRNA methylt 96.1 0.016 3.6E-07 56.8 7.5 73 398-473 52-166 (209)
155 PF05401 NodS: Nodulation prot 96.1 0.0053 1.2E-07 59.9 3.9 104 400-521 46-178 (201)
156 KOG2904 Predicted methyltransf 96.1 0.02 4.2E-07 58.6 7.7 79 400-478 151-291 (328)
157 COG2813 RsmC 16S RNA G1207 met 96.0 0.023 4.9E-07 58.8 8.3 72 400-471 161-265 (300)
158 PLN02568 polyamine oxidase 96.0 0.11 2.5E-06 58.1 14.4 59 112-170 272-342 (539)
159 PHA03411 putative methyltransf 95.9 0.039 8.4E-07 56.7 9.2 73 399-471 66-182 (279)
160 PF03291 Pox_MCEL: mRNA cappin 95.8 0.017 3.6E-07 60.8 6.3 76 398-473 63-187 (331)
161 PLN02676 polyamine oxidase 95.8 0.043 9.3E-07 60.6 9.7 60 111-170 261-328 (487)
162 TIGR02734 crtI_fam phytoene de 95.8 0.47 1E-05 52.0 17.7 53 79-142 230-283 (502)
163 PF06080 DUF938: Protein of un 95.7 0.058 1.2E-06 53.1 9.1 119 400-520 28-189 (204)
164 PF01135 PCMT: Protein-L-isoas 95.7 0.0091 2E-07 58.8 3.5 73 397-472 72-172 (209)
165 PF00891 Methyltransf_2: O-met 95.7 0.018 4E-07 57.0 5.6 78 400-479 103-206 (241)
166 KOG3010 Methyltransferase [Gen 95.6 0.015 3.2E-07 58.4 4.8 73 400-473 36-138 (261)
167 COG0220 Predicted S-adenosylme 95.6 0.028 6.1E-07 56.1 6.6 73 400-472 51-164 (227)
168 TIGR00095 RNA methyltransferas 95.5 0.08 1.7E-06 51.2 9.2 76 397-473 49-160 (189)
169 KOG2361 Predicted methyltransf 95.4 0.027 5.9E-07 56.6 5.7 117 400-518 74-232 (264)
170 PF08704 GCD14: tRNA methyltra 95.4 0.02 4.3E-07 57.9 4.8 78 395-472 38-146 (247)
171 PLN03000 amine oxidase 95.2 0.12 2.6E-06 60.8 11.1 65 101-170 401-473 (881)
172 PRK00536 speE spermidine synth 95.2 0.032 7E-07 56.9 5.8 74 399-473 74-172 (262)
173 COG4262 Predicted spermidine s 95.0 0.037 8E-07 58.6 5.5 95 379-473 255-408 (508)
174 PF05219 DREV: DREV methyltran 94.9 0.14 3E-06 52.1 9.1 116 396-521 93-238 (265)
175 PLN02823 spermine synthase 94.5 0.089 1.9E-06 55.6 6.9 76 399-474 105-222 (336)
176 PF05891 Methyltransf_PK: AdoM 94.3 0.048 1E-06 54.0 4.2 112 399-521 57-199 (218)
177 smart00650 rADc Ribosomal RNA 94.3 0.064 1.4E-06 50.4 5.0 38 398-436 14-57 (169)
178 PRK13168 rumA 23S rRNA m(5)U19 94.3 0.15 3.3E-06 55.5 8.5 42 398-440 298-345 (443)
179 PLN02672 methionine S-methyltr 94.2 0.13 2.8E-06 61.8 8.2 42 397-438 118-166 (1082)
180 PHA03412 putative methyltransf 94.0 0.094 2E-06 52.8 5.5 70 398-467 50-158 (241)
181 TIGR00438 rrmJ cell division p 93.8 0.18 3.8E-06 48.2 7.0 22 451-472 125-146 (188)
182 PF07021 MetW: Methionine bios 93.6 0.45 9.7E-06 46.5 9.3 117 399-522 15-166 (193)
183 COG1041 Predicted DNA modifica 93.6 0.15 3.2E-06 53.9 6.4 67 406-473 212-311 (347)
184 COG1232 HemY Protoporphyrinoge 93.6 0.9 1.9E-05 49.9 12.6 147 112-267 244-443 (444)
185 KOG3178 Hydroxyindole-O-methyl 93.4 0.43 9.3E-06 50.4 9.5 123 399-524 179-331 (342)
186 PRK03522 rumB 23S rRNA methylu 93.3 0.11 2.5E-06 53.9 5.0 41 399-440 175-221 (315)
187 COG0421 SpeE Spermidine syntha 93.3 0.18 4E-06 52.0 6.4 72 400-471 79-189 (282)
188 PF02475 Met_10: Met-10+ like- 93.0 0.094 2E-06 51.4 3.7 100 369-468 72-198 (200)
189 PRK10909 rsmD 16S rRNA m(2)G96 92.8 0.56 1.2E-05 45.9 8.8 76 398-473 54-160 (199)
190 PF03059 NAS: Nicotianamine sy 92.6 0.22 4.7E-06 51.3 5.9 72 400-471 123-229 (276)
191 PRK11727 23S rRNA mA1618 methy 92.4 0.18 3.9E-06 53.0 5.1 44 399-442 116-167 (321)
192 PRK01544 bifunctional N5-gluta 92.4 0.29 6.3E-06 54.5 7.0 75 398-472 348-462 (506)
193 PRK04338 N(2),N(2)-dimethylgua 92.2 0.88 1.9E-05 48.9 10.1 103 399-505 59-188 (382)
194 PF01564 Spermine_synth: Sperm 92.0 0.23 5.1E-06 50.0 5.2 75 399-473 78-192 (246)
195 KOG1499 Protein arginine N-met 92.0 0.26 5.7E-06 52.0 5.6 73 395-469 58-164 (346)
196 TIGR00479 rumA 23S rRNA (uraci 92.0 0.42 9.1E-06 51.8 7.5 41 399-440 294-340 (431)
197 COG0144 Sun tRNA and rRNA cyto 92.0 0.49 1.1E-05 50.3 7.8 78 399-476 158-292 (355)
198 KOG3045 Predicted RNA methylas 91.9 0.2 4.3E-06 51.0 4.4 70 400-474 183-266 (325)
199 PF06962 rRNA_methylase: Putat 91.6 0.29 6.2E-06 45.5 4.8 75 416-490 1-110 (140)
200 PRK11933 yebU rRNA (cytosine-C 91.5 0.45 9.6E-06 52.6 7.0 78 398-475 114-245 (470)
201 KOG1661 Protein-L-isoaspartate 91.4 0.18 3.9E-06 49.9 3.4 72 400-473 85-194 (237)
202 PF10294 Methyltransf_16: Puta 91.2 1.2 2.5E-05 42.4 8.8 77 395-472 43-156 (173)
203 PF03602 Cons_hypoth95: Conser 91.2 0.5 1.1E-05 45.6 6.2 78 397-475 42-156 (183)
204 PRK04148 hypothetical protein; 91.1 0.25 5.4E-06 45.5 3.9 73 399-474 18-111 (134)
205 KOG1500 Protein arginine N-met 90.1 0.53 1.1E-05 49.6 5.6 70 397-469 177-279 (517)
206 PF05185 PRMT5: PRMT5 arginine 90.0 0.37 8E-06 52.9 4.7 71 399-469 188-294 (448)
207 PTZ00338 dimethyladenosine tra 90.0 0.52 1.1E-05 48.9 5.5 43 397-440 36-84 (294)
208 PRK10611 chemotaxis methyltran 89.7 0.65 1.4E-05 48.1 6.0 26 446-471 236-261 (287)
209 PF05148 Methyltransf_8: Hypot 89.6 0.23 4.9E-06 49.2 2.4 93 400-521 75-183 (219)
210 PRK00274 ksgA 16S ribosomal RN 89.3 0.35 7.6E-06 49.3 3.7 37 398-435 43-85 (272)
211 PF00107 ADH_zinc_N: Zinc-bind 89.3 0.21 4.6E-06 43.9 1.8 102 404-511 2-126 (130)
212 PF13578 Methyltransf_24: Meth 88.7 0.27 5.7E-06 42.2 2.0 58 415-473 24-106 (106)
213 TIGR03439 methyl_EasF probable 87.8 1.2 2.7E-05 46.7 6.5 73 400-472 79-197 (319)
214 PF12147 Methyltransf_20: Puta 87.7 2.6 5.7E-05 43.8 8.7 109 400-517 138-292 (311)
215 COG1064 AdhP Zn-dependent alco 87.2 0.85 1.8E-05 48.3 4.9 76 398-474 167-261 (339)
216 PRK14896 ksgA 16S ribosomal RN 87.1 0.62 1.3E-05 47.0 3.8 39 397-436 29-73 (258)
217 PF02527 GidB: rRNA small subu 86.4 1.9 4.1E-05 41.7 6.6 72 400-471 51-147 (184)
218 PF01739 CheR: CheR methyltran 86.4 0.63 1.4E-05 45.5 3.2 24 447-470 150-173 (196)
219 TIGR00478 tly hemolysin TlyA f 86.3 1.4 3E-05 44.2 5.7 114 397-524 75-218 (228)
220 COG2520 Predicted methyltransf 86.3 1.8 3.9E-05 45.9 6.8 78 400-478 191-295 (341)
221 PF05971 Methyltransf_10: Prot 86.0 0.97 2.1E-05 47.1 4.6 43 400-442 105-155 (299)
222 PF13679 Methyltransf_32: Meth 85.8 1.1 2.4E-05 40.9 4.4 40 399-438 27-77 (141)
223 TIGR02085 meth_trns_rumB 23S r 85.5 1.1 2.4E-05 47.9 4.9 41 399-440 235-281 (374)
224 KOG1975 mRNA cap methyltransfe 85.3 1.3 2.7E-05 46.7 4.9 70 400-470 120-235 (389)
225 PF04816 DUF633: Family of unk 84.9 3.3 7.2E-05 40.7 7.5 72 401-473 1-102 (205)
226 PF03141 Methyltransf_29: Puta 84.6 0.75 1.6E-05 50.8 3.1 72 400-472 120-219 (506)
227 TIGR01444 fkbM_fam methyltrans 82.7 2.3 5.1E-05 38.0 5.1 41 400-440 1-48 (143)
228 PF09445 Methyltransf_15: RNA 82.4 1.7 3.8E-05 41.3 4.2 41 401-442 3-49 (163)
229 TIGR02143 trmA_only tRNA (urac 82.2 1.9 4E-05 45.8 4.9 40 400-440 200-245 (353)
230 COG0742 N6-adenine-specific me 81.5 7.9 0.00017 37.8 8.4 79 395-473 41-155 (187)
231 PF07942 N2227: N2227-like pro 81.0 15 0.00033 37.8 10.8 62 448-522 178-241 (270)
232 TIGR00755 ksgA dimethyladenosi 80.9 1.9 4.1E-05 43.3 4.2 37 398-435 30-72 (253)
233 PF13454 NAD_binding_9: FAD-NA 80.8 3.1 6.7E-05 38.6 5.3 21 112-132 133-153 (156)
234 PF01234 NNMT_PNMT_TEMT: NNMT/ 80.6 1.3 2.9E-05 45.1 3.0 62 449-521 176-237 (256)
235 TIGR00308 TRM1 tRNA(guanine-26 79.2 6 0.00013 42.5 7.5 73 400-472 47-147 (374)
236 COG2263 Predicted RNA methylas 78.9 3.6 7.7E-05 40.3 5.1 43 393-436 41-90 (198)
237 PF01170 UPF0020: Putative RNA 78.8 4.2 9.1E-05 38.9 5.6 54 417-470 64-149 (179)
238 PRK05031 tRNA (uracil-5-)-meth 78.4 2.9 6.3E-05 44.5 4.8 40 400-440 209-254 (362)
239 TIGR02730 carot_isom carotene 77.5 12 0.00026 41.2 9.4 84 76-170 237-328 (493)
240 COG1352 CheR Methylase of chem 75.9 4.2 9.1E-05 41.8 5.0 24 448-471 217-240 (268)
241 PLN02668 indole-3-acetate carb 75.4 7.3 0.00016 42.1 6.8 72 449-521 214-307 (386)
242 COG4798 Predicted methyltransf 75.3 9.6 0.00021 37.7 6.9 62 447-521 141-203 (238)
243 COG1063 Tdh Threonine dehydrog 75.1 6.3 0.00014 41.6 6.3 75 400-477 171-274 (350)
244 cd08254 hydroxyacyl_CoA_DH 6-h 74.1 4.6 9.9E-05 41.0 4.8 75 399-473 167-264 (338)
245 TIGR02733 desat_CrtD C-3',4' d 73.1 17 0.00038 39.7 9.3 67 82-157 246-316 (492)
246 KOG0029 Amine oxidase [Seconda 72.9 11 0.00024 42.1 7.7 51 214-266 402-455 (501)
247 PF11899 DUF3419: Protein of u 72.4 5.7 0.00012 42.8 5.2 61 374-436 1-79 (380)
248 KOG1501 Arginine N-methyltrans 71.9 8.5 0.00018 42.2 6.2 69 400-469 69-172 (636)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 71.1 8.2 0.00018 39.7 5.8 78 398-475 86-222 (283)
250 PRK00050 16S rRNA m(4)C1402 me 70.8 4.6 0.0001 42.0 3.9 37 399-435 21-65 (296)
251 PF06859 Bin3: Bicoid-interact 70.5 1.9 4.2E-05 38.5 0.9 25 447-471 19-43 (110)
252 TIGR02822 adh_fam_2 zinc-bindi 70.2 7.8 0.00017 40.1 5.5 75 399-473 167-255 (329)
253 COG0357 GidB Predicted S-adeno 70.1 11 0.00024 37.6 6.2 73 399-471 69-167 (215)
254 PF03492 Methyltransf_7: SAM d 69.8 7 0.00015 41.3 5.1 72 449-521 160-251 (334)
255 COG0500 SmtA SAM-dependent met 67.0 37 0.0008 27.9 8.0 76 401-476 52-159 (257)
256 cd08237 ribitol-5-phosphate_DH 66.2 11 0.00023 39.3 5.5 75 398-473 164-257 (341)
257 PF01861 DUF43: Protein of unk 66.1 20 0.00043 36.4 7.1 81 397-477 44-153 (243)
258 KOG3191 Predicted N6-DNA-methy 65.1 25 0.00053 34.6 7.2 109 367-477 12-173 (209)
259 PRK09880 L-idonate 5-dehydroge 62.3 11 0.00024 39.1 4.7 73 398-473 170-267 (343)
260 KOG2730 Methylase [General fun 61.9 7.2 0.00016 39.2 3.1 36 406-442 109-144 (263)
261 PF01728 FtsJ: FtsJ-like methy 61.8 5.5 0.00012 37.5 2.2 27 399-425 25-59 (181)
262 COG0604 Qor NADPH:quinone redu 61.5 13 0.00028 38.9 5.2 71 398-472 143-241 (326)
263 cd08281 liver_ADH_like1 Zinc-d 61.3 11 0.00024 39.5 4.7 71 399-472 193-290 (371)
264 KOG2940 Predicted methyltransf 59.7 7.5 0.00016 39.4 2.7 155 358-520 31-224 (325)
265 KOG3201 Uncharacterized conser 59.6 36 0.00078 32.9 7.1 72 400-471 32-139 (201)
266 cd08283 FDH_like_1 Glutathione 59.4 20 0.00044 37.9 6.2 76 397-472 184-306 (386)
267 COG0030 KsgA Dimethyladenosine 59.0 9.8 0.00021 38.9 3.6 38 397-435 30-73 (259)
268 COG2265 TrmA SAM-dependent met 58.7 11 0.00025 41.2 4.2 42 399-441 295-342 (432)
269 TIGR03366 HpnZ_proposed putati 58.0 16 0.00035 36.7 5.0 74 398-474 121-220 (280)
270 PF04672 Methyltransf_19: S-ad 57.5 19 0.0004 37.1 5.3 114 400-518 71-231 (267)
271 PF11968 DUF3321: Putative met 56.5 4.2 9E-05 40.6 0.4 103 400-521 54-179 (219)
272 COG1251 NirB NAD(P)H-nitrite r 56.3 15 0.00032 42.8 4.7 88 30-134 24-111 (793)
273 PF03721 UDPG_MGDP_dh_N: UDP-g 56.1 4.2 9.1E-05 39.2 0.4 70 406-476 16-124 (185)
274 TIGR02825 B4_12hDH leukotriene 55.7 19 0.00042 36.7 5.2 58 406-471 155-236 (325)
275 KOG3420 Predicted RNA methylas 55.6 13 0.00029 35.2 3.5 46 396-441 47-98 (185)
276 PF13738 Pyr_redox_3: Pyridine 55.2 23 0.00051 33.2 5.3 40 82-133 96-135 (203)
277 TIGR03451 mycoS_dep_FDH mycoth 54.0 17 0.00036 37.9 4.5 72 398-472 177-276 (358)
278 PHA01634 hypothetical protein 54.0 17 0.00037 33.7 3.8 60 390-452 21-87 (156)
279 PF05958 tRNA_U5-meth_tr: tRNA 53.8 16 0.00035 38.8 4.3 41 400-441 199-245 (352)
280 PLN03154 putative allyl alcoho 53.3 23 0.00049 37.0 5.3 59 406-471 175-257 (348)
281 cd08261 Zn_ADH7 Alcohol dehydr 52.0 22 0.00048 36.3 4.9 74 398-471 160-257 (337)
282 PF08123 DOT1: Histone methyla 51.1 41 0.00088 33.1 6.3 73 398-470 43-156 (205)
283 PF09243 Rsm22: Mitochondrial 50.0 56 0.0012 33.4 7.4 42 396-437 32-81 (274)
284 cd08239 THR_DH_like L-threonin 49.7 23 0.00051 36.3 4.7 71 399-472 165-262 (339)
285 cd08294 leukotriene_B4_DH_like 49.3 28 0.00062 35.1 5.2 58 406-471 160-240 (329)
286 COG0116 Predicted N6-adenine-s 49.2 45 0.00097 36.1 6.7 57 416-472 256-344 (381)
287 KOG1336 Monodehydroascorbate/f 49.1 26 0.00055 38.8 4.9 45 76-134 135-179 (478)
288 COG2130 Putative NADP-dependen 48.7 26 0.00056 36.9 4.7 61 406-470 167-247 (340)
289 PF01266 DAO: FAD dependent ox 48.5 30 0.00066 34.9 5.3 50 73-135 152-202 (358)
290 TIGR02374 nitri_red_nirB nitri 47.9 28 0.0006 41.0 5.4 49 73-135 59-107 (785)
291 COG1189 Predicted rRNA methyla 47.6 20 0.00043 36.4 3.5 119 398-524 80-225 (245)
292 KOG0023 Alcohol dehydrogenase, 47.0 41 0.00088 35.8 5.8 68 406-473 197-280 (360)
293 cd08293 PTGR2 Prostaglandin re 47.0 30 0.00065 35.4 5.0 59 406-471 171-253 (345)
294 TIGR01202 bchC 2-desacetyl-2-h 46.8 30 0.00064 35.4 4.9 69 400-472 147-231 (308)
295 KOG0820 Ribosomal RNA adenine 46.5 22 0.00048 36.9 3.7 44 397-441 58-107 (315)
296 PRK09260 3-hydroxybutyryl-CoA 45.8 68 0.0015 32.6 7.3 70 406-476 17-121 (288)
297 KOG1709 Guanidinoacetate methy 45.6 33 0.00072 34.6 4.7 92 378-473 80-207 (271)
298 cd08255 2-desacetyl-2-hydroxye 45.2 37 0.00081 33.5 5.2 66 406-471 113-189 (277)
299 cd08291 ETR_like_1 2-enoyl thi 44.7 35 0.00076 34.8 5.0 59 406-472 160-242 (324)
300 KOG1331 Predicted methyltransf 44.0 8.3 0.00018 40.0 0.3 76 400-475 48-146 (293)
301 cd08295 double_bond_reductase_ 44.0 44 0.00095 34.3 5.7 62 406-471 168-250 (338)
302 KOG0024 Sorbitol dehydrogenase 43.6 45 0.00097 35.5 5.5 76 400-475 172-276 (354)
303 cd08242 MDR_like Medium chain 43.4 50 0.0011 33.3 5.9 59 406-471 171-244 (319)
304 COG4627 Uncharacterized protei 43.1 21 0.00046 34.1 2.8 27 445-471 59-85 (185)
305 PRK09754 phenylpropionate diox 42.3 41 0.00089 35.8 5.3 47 75-135 65-111 (396)
306 TIGR01292 TRX_reduct thioredox 42.2 60 0.0013 32.2 6.2 49 73-134 62-110 (300)
307 cd05188 MDR Medium chain reduc 41.5 89 0.0019 30.0 7.1 71 399-472 136-232 (271)
308 COG3963 Phospholipid N-methylt 41.3 81 0.0018 30.7 6.4 75 400-474 51-158 (194)
309 COG1255 Uncharacterized protei 41.2 18 0.00038 32.9 1.9 26 399-425 15-47 (129)
310 PRK10309 galactitol-1-phosphat 41.0 51 0.0011 33.9 5.6 71 399-472 162-260 (347)
311 cd08233 butanediol_DH_like (2R 40.9 47 0.001 34.3 5.3 64 406-472 188-272 (351)
312 PF10100 DUF2338: Uncharacteri 40.2 27 0.00058 38.0 3.4 36 124-163 83-118 (429)
313 PRK11783 rlmL 23S rRNA m(2)G24 38.9 64 0.0014 37.6 6.5 29 414-442 256-284 (702)
314 PF02005 TRM: N2,N2-dimethylgu 38.8 70 0.0015 34.5 6.3 73 400-472 52-154 (377)
315 cd08230 glucose_DH Glucose deh 38.8 68 0.0015 33.3 6.2 71 399-473 174-270 (355)
316 PF07091 FmrO: Ribosomal RNA m 38.6 25 0.00054 35.9 2.7 44 399-442 107-157 (251)
317 COG2384 Predicted SAM-dependen 38.5 91 0.002 31.4 6.5 43 400-442 19-68 (226)
318 TIGR03378 glycerol3P_GlpB glyc 38.2 68 0.0015 35.2 6.2 136 74-266 269-412 (419)
319 COG0677 WecC UDP-N-acetyl-D-ma 38.0 29 0.00062 37.8 3.2 70 406-476 25-132 (436)
320 PF02153 PDH: Prephenate dehyd 37.5 87 0.0019 31.5 6.5 51 414-468 11-75 (258)
321 COG3897 Predicted methyltransf 36.8 33 0.00072 34.0 3.1 71 398-470 80-176 (218)
322 TIGR02733 desat_CrtD C-3',4' d 36.3 27 0.00059 38.2 2.8 31 238-268 459-490 (492)
323 PRK05808 3-hydroxybutyryl-CoA 36.0 1.1E+02 0.0025 30.8 7.2 69 406-475 19-121 (282)
324 PF01555 N6_N4_Mtase: DNA meth 35.4 24 0.00052 33.5 2.0 22 451-472 35-56 (231)
325 cd08232 idonate-5-DH L-idonate 35.0 54 0.0012 33.4 4.6 74 398-471 166-261 (339)
326 PRK14989 nitrite reductase sub 34.6 60 0.0013 38.7 5.4 47 75-135 66-112 (847)
327 PLN02827 Alcohol dehydrogenase 34.6 55 0.0012 34.6 4.7 71 398-471 194-294 (378)
328 cd08245 CAD Cinnamyl alcohol d 34.4 72 0.0016 32.3 5.4 67 406-472 178-256 (330)
329 PRK11524 putative methyltransf 34.0 61 0.0013 33.2 4.8 39 398-436 209-252 (284)
330 PF01269 Fibrillarin: Fibrilla 33.9 45 0.00098 33.6 3.6 74 398-471 74-177 (229)
331 PF04989 CmcI: Cephalosporin h 33.8 59 0.0013 32.2 4.4 25 449-473 124-148 (206)
332 KOG1197 Predicted quinone oxid 32.9 75 0.0016 33.0 5.0 61 406-470 163-243 (336)
333 PRK11760 putative 23S rRNA C24 32.7 31 0.00067 36.9 2.4 27 397-424 211-243 (357)
334 cd08234 threonine_DH_like L-th 32.5 57 0.0012 33.0 4.3 73 399-471 161-256 (334)
335 cd08298 CAD2 Cinnamyl alcohol 32.4 72 0.0016 32.3 5.0 63 406-472 183-256 (329)
336 PLN02514 cinnamyl-alcohol dehy 32.2 73 0.0016 33.3 5.1 62 406-473 196-276 (357)
337 PRK06035 3-hydroxyacyl-CoA deh 32.0 1.5E+02 0.0033 30.1 7.4 63 406-469 19-118 (291)
338 cd08285 NADP_ADH NADP(H)-depen 31.9 70 0.0015 33.0 4.9 67 399-472 168-266 (351)
339 TIGR03169 Nterm_to_SelD pyridi 31.5 76 0.0016 33.0 5.1 47 74-135 60-106 (364)
340 PRK05476 S-adenosyl-L-homocyst 30.5 95 0.0021 34.1 5.8 95 397-498 211-332 (425)
341 PF03686 UPF0146: Uncharacteri 30.3 40 0.00088 30.9 2.4 26 399-425 15-47 (127)
342 cd08266 Zn_ADH_like1 Alcohol d 30.2 1.9E+02 0.0041 28.8 7.7 63 406-472 183-265 (342)
343 PRK04965 NADH:flavorubredoxin 30.1 89 0.0019 32.9 5.4 37 237-273 265-306 (377)
344 PLN02178 cinnamyl-alcohol dehy 30.0 70 0.0015 33.9 4.6 60 406-472 194-273 (375)
345 PLN02586 probable cinnamyl alc 29.8 65 0.0014 33.8 4.3 68 399-472 185-278 (360)
346 PRK13699 putative methylase; P 29.8 44 0.00094 33.3 2.8 20 451-470 51-70 (227)
347 COG2509 Uncharacterized FAD-de 29.7 1E+02 0.0023 34.2 5.8 52 70-132 175-226 (486)
348 PF00398 RrnaAD: Ribosomal RNA 29.4 65 0.0014 32.5 4.1 38 397-435 30-73 (262)
349 PRK11524 putative methyltransf 29.4 46 0.001 34.0 3.0 21 451-471 59-79 (284)
350 TIGR02730 carot_isom carotene 29.1 39 0.00084 37.2 2.6 31 238-268 459-490 (493)
351 COG1233 Phytoene dehydrogenase 29.0 1E+02 0.0023 34.0 5.9 50 74-134 230-279 (487)
352 PRK07819 3-hydroxybutyryl-CoA 28.9 2E+02 0.0043 29.5 7.5 71 406-477 21-126 (286)
353 PLN02172 flavin-containing mon 28.9 1.2E+02 0.0025 33.5 6.2 43 80-134 123-171 (461)
354 TIGR03197 MnmC_Cterm tRNA U-34 28.7 79 0.0017 33.2 4.7 42 82-135 148-189 (381)
355 cd08296 CAD_like Cinnamyl alco 28.3 93 0.002 31.8 5.1 63 406-472 179-259 (333)
356 PRK11064 wecC UDP-N-acetyl-D-m 28.2 1.9E+02 0.0042 31.3 7.7 69 406-475 19-122 (415)
357 PLN02545 3-hydroxybutyryl-CoA 27.7 2.2E+02 0.0048 29.0 7.7 69 406-475 20-122 (295)
358 COG4734 ArdA Antirestriction p 27.5 27 0.00058 33.5 0.8 47 30-83 5-62 (193)
359 PF03486 HI0933_like: HI0933-l 27.4 85 0.0018 34.2 4.7 54 113-169 143-196 (409)
360 cd08286 FDH_like_ADH2 formalde 26.7 1.2E+02 0.0025 31.1 5.5 59 406-471 182-265 (345)
361 PRK07066 3-hydroxybutyryl-CoA 26.5 2.3E+02 0.005 29.9 7.6 69 406-475 23-122 (321)
362 COG5379 BtaA S-adenosylmethion 26.5 1.2E+02 0.0026 32.0 5.3 36 400-436 66-107 (414)
363 cd00401 AdoHcyase S-adenosyl-L 26.1 1.3E+02 0.0029 32.8 6.0 70 396-472 200-289 (413)
364 PRK09424 pntA NAD(P) transhydr 25.9 74 0.0016 35.8 4.0 39 395-433 162-207 (509)
365 PRK13699 putative methylase; P 25.8 93 0.002 30.9 4.3 39 399-437 165-208 (227)
366 COG4076 Predicted RNA methylas 25.8 56 0.0012 32.4 2.6 100 372-475 10-138 (252)
367 PRK07530 3-hydroxybutyryl-CoA 24.9 2.7E+02 0.0058 28.3 7.7 70 406-476 20-123 (292)
368 PF02737 3HCDH_N: 3-hydroxyacy 24.3 1.2E+02 0.0026 28.9 4.7 70 406-476 15-118 (180)
369 PRK10742 putative methyltransf 24.1 1.1E+02 0.0024 31.3 4.5 37 400-437 91-133 (250)
370 PRK05396 tdh L-threonine 3-deh 24.0 1.1E+02 0.0025 31.2 4.8 65 406-473 179-264 (341)
371 cd08279 Zn_ADH_class_III Class 23.7 1.1E+02 0.0023 31.9 4.6 64 406-472 198-282 (363)
372 TIGR03140 AhpF alkyl hydropero 23.7 1.7E+02 0.0037 32.5 6.4 51 73-135 272-322 (515)
373 PF08977 BOFC_N: Bypass of For 23.3 27 0.00059 27.1 -0.0 43 51-93 2-49 (51)
374 cd08263 Zn_ADH10 Alcohol dehyd 23.2 1.3E+02 0.0028 31.3 5.0 59 406-471 203-286 (367)
375 PRK02565 photosystem II reacti 23.2 48 0.001 24.2 1.2 16 236-251 22-37 (39)
376 COG1062 AdhC Zn-dependent alco 22.9 1.2E+02 0.0026 32.6 4.6 64 406-472 201-285 (366)
377 COG2072 TrkA Predicted flavopr 22.7 1.1E+02 0.0023 33.6 4.5 31 102-134 110-142 (443)
378 PRK09564 coenzyme A disulfide 22.5 1.8E+02 0.004 31.1 6.2 48 75-134 63-113 (444)
379 PF10354 DUF2431: Domain of un 22.3 3.4E+02 0.0074 25.7 7.3 21 451-471 104-124 (166)
380 PRK14665 mnmA tRNA-specific 2- 22.1 4.3E+02 0.0094 28.3 8.8 37 406-442 21-64 (360)
381 cd08236 sugar_DH NAD(P)-depend 21.9 1.2E+02 0.0026 30.9 4.4 73 399-471 161-257 (343)
382 KOG1562 Spermidine synthase [A 21.9 1.5E+02 0.0032 31.3 5.0 75 399-473 123-237 (337)
383 PF06557 DUF1122: Protein of u 21.5 1E+02 0.0022 29.6 3.5 54 452-519 66-119 (170)
384 COG2081 Predicted flavoprotein 21.3 1.4E+02 0.0031 32.5 4.9 57 111-170 142-198 (408)
385 PRK07417 arogenate dehydrogena 21.3 2.7E+02 0.0059 28.2 6.8 60 406-471 16-89 (279)
386 cd05278 FDH_like Formaldehyde 21.3 1.5E+02 0.0031 30.2 4.9 70 399-471 169-266 (347)
387 cd08269 Zn_ADH9 Alcohol dehydr 21.0 1.6E+02 0.0035 29.2 5.1 63 406-472 145-229 (312)
388 PRK11154 fadJ multifunctional 20.8 3.1E+02 0.0067 32.1 7.9 77 400-476 311-429 (708)
389 COG1231 Monoamine oxidase [Ami 20.3 77 0.0017 35.0 2.7 33 234-266 408-443 (450)
390 KOG1122 tRNA and rRNA cytosine 20.2 4.1E+02 0.0089 29.4 8.0 79 398-476 242-375 (460)
391 CHL00108 psbJ photosystem II p 20.0 61 0.0013 23.8 1.2 16 236-251 23-38 (40)
392 KOG1276 Protoporphyrinogen oxi 20.0 1.2E+02 0.0026 33.6 4.0 51 216-266 436-489 (491)
No 1
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=381.02 Aligned_cols=158 Identities=34% Similarity=0.537 Sum_probs=146.1
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc----eeEeccCCCCCCCCCCCccccccccCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH----DIFLHCDKNSMPQNPAAWSAWSFLGSLDSK 187 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~----~~vlHtD~s~mP~~~~aWaswNy~~~~~~~ 187 (525)
||.|...+|+++.||+||+|||+||||.||.+ ||++|+++|++|. ++|||+|+++||+++.||++|||..+....
T Consensus 249 Gv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~~lmPrR~~Awaswny~~~~~~e 327 (447)
T COG2907 249 GVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAVLHTDASLMPRRLRAWASWNYLGTVQWE 327 (447)
T ss_pred ceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecccccccccccccccceecccccc
Confidence 78888888999999999999999999999995 9999999999999 999999999999999999999999873211
Q ss_pred ----------C----CCCCCCCeEEEcC--CCCCCcceeeEEEecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCCCCC
Q 043102 188 ----------N----LGETSLPYLVTLN--PDHAPEHTLLKWSTGPPVPFVAASKASLELGHIQGRRGIWFRGAYQGYGF 251 (525)
Q Consensus 188 ----------n----l~~~~~~~fvTLN--p~~~p~~il~~~~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g~Gf 251 (525)
| +.. ..++||||| |..+|++|+++..|+||+|+.+++.||++++.+||.|++||||||++.||
T Consensus 328 ~~~~~lty~mN~lq~l~~-~~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~~avraqq~l~alqg~~~twfcgAy~g~GF 406 (447)
T COG2907 328 LCQGSLTYWMNRLQALIS-VRDYFVTLNNRPWVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTWFCGAYFGRGF 406 (447)
T ss_pred ccCcceeccHHHhhcccC-CcceEEEecCCcccChHHhhHHhhcCCcCCCHHHHHHHHHHHhhhcCCCCCcchhhhcccc
Confidence 3 333 578999999 88899999999999999999999999999999999999999999999999
Q ss_pred chhhhchHHHHHhhhcCCccc
Q 043102 252 HEDGLKDLSINSCMTYGEECF 272 (525)
Q Consensus 252 HEdg~~Sgl~aA~~llG~~~p 272 (525)
||||+.||++||++| |+.++
T Consensus 407 HeDg~~aGl~va~~l-g~~w~ 426 (447)
T COG2907 407 HEDGLQAGLAVAEDL-GAPWE 426 (447)
T ss_pred chhhhhhHHHHHHhc-CCccc
Confidence 999999999999999 87654
No 2
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-35 Score=299.54 Aligned_cols=162 Identities=38% Similarity=0.634 Sum_probs=150.0
Q ss_pred hhhcccCchhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc----
Q 043102 355 RHISRTNTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG---- 405 (525)
Q Consensus 355 ~~~~~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG---- 405 (525)
.+..++|++..+++||++|||++|+||++||||+|+|||+||+++ +|||||
T Consensus 5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred ccccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 355667899999999999999999999999999999999999875 999999
Q ss_pred --HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHh
Q 043102 406 --TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCES 460 (525)
Q Consensus 406 --a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r 460 (525)
++++|++||++|+|||+|++|.+.|++++++.|++++ |+ |||.+++++||+.+++
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~ 164 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYA 164 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhCcccHHHHHHHHHh
Confidence 8999999999999999999999999999999999865 55 8899999999999999
Q ss_pred ccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 461 LIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 461 ~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+|+|||++++|+|+.+++.+. ...+||.+||||||+|||++++.+.++++ ||+|.-
T Consensus 165 ~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~~~-~~~v~~ 220 (283)
T COG2230 165 LLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELASEA-GFVVLD 220 (283)
T ss_pred hcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHHhc-CcEEeh
Confidence 999999999999999987654 67999999999999999999999998885 898863
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2.5e-35 Score=298.47 Aligned_cols=160 Identities=43% Similarity=0.677 Sum_probs=126.3
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchhccccCCC-------------------------eehhhc------HHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR-------------------------EVIFLG------TIEVV 410 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~-------------------------rVLDIG------a~~lA 410 (525)
+++++++||++|||++|+||++|||++|+|||+||+++ |||||| ++++|
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 56899999999999999999999999999999999876 999999 89999
Q ss_pred HhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcccHHHHHHHHHhccCCCcE
Q 043102 411 KRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 411 ~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
+++||+|||||+|++|.++|+++++++|++++ |+ |+|.++++.||++|.++|||||+
T Consensus 82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 82 ERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp HHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999876 55 88999999999999999999999
Q ss_pred EEEEEecCCCcchhcccCc-hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 468 FVLQFISIPDERYNEFRLS-SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 468 ~viq~i~~~~~~~~~~~~~-~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++|.|+.++..+..+... .+||++||||||+|||+++++..+++ +||+|.-..
T Consensus 162 ~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~-~~l~v~~~~ 216 (273)
T PF02353_consen 162 LVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAED-AGLEVEDVE 216 (273)
T ss_dssp EEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHH-TT-EEEEEE
T ss_pred EEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhc-CCEEEEEEE
Confidence 9999999998877665443 49999999999999999999998888 599987543
No 4
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.97 E-value=1.2e-31 Score=283.37 Aligned_cols=207 Identities=26% Similarity=0.467 Sum_probs=169.7
Q ss_pred cceEEEEcChHHHHHHHHHcCCCccccccccc--ccCCCchhhhhhhHH-------------HH---HHHH-hhhcccCc
Q 043102 302 LKTVLRIHSPQFYWKILIANRDLDSSVSRLNQ--KRGWWSPILFTAGFA-------------SA---KYFF-RHISRTNT 362 (525)
Q Consensus 302 ~~~~l~v~~~~~~~rl~~~n~~~~~~~~g~~e--~~g~w~~~~l~~~l~-------------~~---~~~~-~~~~~~N~ 362 (525)
++++|+|+|+++++|++ ..|+ +|++| |+|+|+.+.+...+. .+ ...+ .++.+.|+
T Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~-----lg~~eaY~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 108 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVL-QEGS-----LGLGESYMDGWWDCDRLDEFFSRVLRAGLDEKLPHHLKDTLRILRARLFNLQS 108 (383)
T ss_pred CCeEEEECCHHHHHHHh-ccCC-----ccHHHHHHcCCeecCCHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHhccCC
Confidence 67899999999999999 8888 89999 999999765433221 01 1111 22456799
Q ss_pred hhHHHHhhhcccccchHHHHhccccccchhccccCCC------------------------eehhhc------HHHHHHh
Q 043102 363 LTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVR------------------------EVIFLG------TIEVVKR 412 (525)
Q Consensus 363 ~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~------------------------rVLDIG------a~~lA~~ 412 (525)
++++++||++|||++|+||++|||++|+|||+||++. +||||| ++++|++
T Consensus 109 ~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 109 KKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred hhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999642 999999 7888887
Q ss_pred cCCEEEEEcCChHHHHHHHHHHHHcCCC----------CC-Cc--------ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 413 TGCKYTGITLAEKQLKYAGIKVKEADLE----------RN-DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 413 ~G~~VtGIdlS~eql~~Ar~r~~~~gl~----------d~-D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+|++|+|||+|++|++.|+++++...+. .. |. |+|.++++.+|+++.++|||||+++++++
T Consensus 189 ~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 189 YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8999999999999999999998532221 11 44 67788899999999999999999999999
Q ss_pred cCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 474 SIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 474 ~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+.+... .....|+++|||||+++|+++++...++. +|+|.-
T Consensus 269 ~~~~~~----~~~~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d 309 (383)
T PRK11705 269 GSNKTD----TNVDPWINKYIFPNGCLPSVRQIAQASEG--LFVMED 309 (383)
T ss_pred cCCCCC----CCCCCCceeeecCCCcCCCHHHHHHHHHC--CcEEEE
Confidence 776532 34578999999999999999999887664 787754
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=9.9e-13 Score=137.48 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=112.8
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchhccccCC--------------------------------Ceehhhc----
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKV--------------------------------REVIFLG---- 405 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~--------------------------------~rVLDIG---- 405 (525)
+....+++|+.|||..+++|+.++++.|+ .+||+. .+|||||
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 33556889999999999999999988764 344432 2899999
Q ss_pred --HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc--cc----CcccHHHHHHHHH
Q 043102 406 --TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR--SF----GHEYMEEFFGCCE 459 (525)
Q Consensus 406 --a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~--~v----g~~~~~~~f~~i~ 459 (525)
+..+++++|++|+|||+|++|++.|++++++.|+.++ |. .. ...+...+|+++.
T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340)
T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA 210 (340)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH
Confidence 7888887799999999999999999999988776543 22 00 1346789999999
Q ss_pred hccCCCcEEEEEEecCCCcchhc--ccCc-----hhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 460 SLIAKDGLFVLQFISIPDERYNE--FRLS-----SDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 460 r~LkpGG~~viq~i~~~~~~~~~--~~~~-----~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|+|||||++++.++...+..... .... ..+...|.+|. ..+..++.+.++++ ||+++..
T Consensus 211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~~a-Gf~~v~~ 276 (340)
T PLN02244 211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAESL-GLQDIKT 276 (340)
T ss_pred HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHC-CCCeeEe
Confidence 99999999999887654321110 0000 11233444553 24789999999985 9987654
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.2e-12 Score=130.47 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=114.8
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKY 429 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~ 429 (525)
..+...+++|+..||+.|++.++.++..+.-. ...-+..+|||+| |+.+++.. .++|+|+|+|++|++.
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence 46678899999999999999988888765321 1222456999999 88888874 3799999999999999
Q ss_pred HHHHHHHcCCCCC-----------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCc
Q 043102 430 AGIKVKEADLERN-----------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLS 486 (525)
Q Consensus 430 Ar~r~~~~gl~d~-----------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~ 486 (525)
|++|+.+.|...- |. ..| ..+.+..+++++|+|||||++++-++..++...-. ...
T Consensus 91 a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~-~~~ 169 (238)
T COG2226 91 AREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR-KAY 169 (238)
T ss_pred HHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH-HHH
Confidence 9999998664321 33 223 35789999999999999999999999887652110 001
Q ss_pred hhHHhhcccC-------------------CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 487 SDFMKEYIFP-------------------GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 487 ~~fi~kYIFP-------------------Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..|..+++.| .-..|+.+++...++++ ||+.+.
T Consensus 170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~-gf~~i~ 221 (238)
T COG2226 170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKA-GFEEVR 221 (238)
T ss_pred HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhc-CceEEe
Confidence 1222233333 12459999999999995 888543
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.38 E-value=3.3e-13 Score=134.22 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=62.9
Q ss_pred cCchhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHH
Q 043102 360 TNTLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQL 427 (525)
Q Consensus 360 ~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql 427 (525)
.+.++..++.|+..||..|++.++..+..+... ...-+..+|||+| ++.++++. +++|+|+|+|++|+
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML 85 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML 85 (233)
T ss_dssp -------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH
Confidence 456788899999999999999998888765432 1223345999999 67778764 47999999999999
Q ss_pred HHHHHHHHHcCCCCC-----------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEEEecCCCcch----
Q 043102 428 KYAGIKVKEADLERN-----------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQFISIPDERY---- 480 (525)
Q Consensus 428 ~~Ar~r~~~~gl~d~-----------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~---- 480 (525)
+.|++++++.+...- |. ..| ..+.+..+++++|+|||||+++|.+++.++...
T Consensus 86 ~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~ 165 (233)
T PF01209_consen 86 EVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRAL 165 (233)
T ss_dssp HHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH
T ss_pred HHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhce
Confidence 999999988765321 22 233 356889999999999999999999999887531
Q ss_pred -hcccC-chhHHhhcccCC------------CCCCCHHHHHHHHHhcCCcEE
Q 043102 481 -NEFRL-SSDFMKEYIFPG------------GCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 481 -~~~~~-~~~fi~kYIFPG------------g~LPsl~~i~~~~~~a~gl~V 518 (525)
..|.. ..+++-+ ++.+ ..+|+.+++.+.++++ ||+.
T Consensus 166 ~~~y~~~ilP~~g~-l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~-Gf~~ 215 (233)
T PF01209_consen 166 YKFYFKYILPLIGR-LLSGDREAYRYLPESIRRFPSPEELKELLEEA-GFKN 215 (233)
T ss_dssp HHH-------------------------------------------------
T ss_pred eeeeeccccccccc-cccccccccccccccccccccccccccccccc-cccc
Confidence 11111 1222211 1111 1458888999999985 8874
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=6.3e-11 Score=119.58 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=103.6
Q ss_pred chhHHHHhhhcccccchHHHHhccccccchh----ccccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTYS----CALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys----~a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~ 429 (525)
.+...++.++..||..+++..+..+..+... ..+-+..+||||| +..++++.+ ++|+|||+|++|++.
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4567789999999998887655545433221 1233445999999 677777644 699999999999999
Q ss_pred HHHHHHH--cCCCCC------------------Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc
Q 043102 430 AGIKVKE--ADLERN------------------DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF 483 (525)
Q Consensus 430 Ar~r~~~--~gl~d~------------------D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~ 483 (525)
|+++... .+...+ |. . + ...+...+++++.|+|||||++++.++..++..+..
T Consensus 114 A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~- 192 (261)
T PLN02233 114 AASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT- 192 (261)
T ss_pred HHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH-
Confidence 9988641 111000 33 0 1 135788999999999999999999988876543211
Q ss_pred cCchhHHhhccc-CC-----------------CCCCCHHHHHHHHHhcCCcEEE
Q 043102 484 RLSSDFMKEYIF-PG-----------------GCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 484 ~~~~~fi~kYIF-PG-----------------g~LPsl~~i~~~~~~a~gl~V~ 519 (525)
....|..+.+. |- ...++..++.+.++++ ||++.
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~a-GF~~~ 244 (261)
T PLN02233 193 -SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEA-GFSSA 244 (261)
T ss_pred -HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCEE
Confidence 11122221111 10 2468999999999985 99865
No 9
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.06 E-value=1.4e-09 Score=106.04 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=85.4
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cccc------Ccc
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSF------GHE 449 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~v------g~~ 449 (525)
+||||| +..+++++ +++|+|+|+|++|++.|++++++.|+.++ |..+ ...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~ 81 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIK 81 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCC
Confidence 699999 77888876 68999999999999999999988887553 2201 124
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
+++.+|+++.++|||||+++++++.... +. ....+++.. ++|+..++.+.++++ ||++.-..
T Consensus 82 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~--~~~~~~~~~------~~~s~~~~~~~l~~~-Gf~~~~~~ 143 (224)
T smart00828 82 DKMDLFSNISRHLKDGGHLVLADFIANL--LS--AIEHEETTS------YLVTREEWAELLARN-NLRVVEGV 143 (224)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEccccc--Cc--ccccccccc------ccCCHHHHHHHHHHC-CCeEEEeE
Confidence 6889999999999999999999875332 10 112333333 378999999999995 99987654
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.03 E-value=1.2e-09 Score=107.00 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=104.6
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccc--h--hccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLT--Y--SCALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLK 428 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~--y--s~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~ 428 (525)
..+++.++.++.+||..|.+..+..+..+. . ....-++.+||||| +..+++.. +++|+|+|+|++|++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~ 84 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLS 84 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 345778899999999988877655554321 0 11222345999999 67777753 579999999999999
Q ss_pred HHHHHHHHcCCCCC-----------------Cc-cc-----CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC
Q 043102 429 YAGIKVKEADLERN-----------------DR-SF-----GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL 485 (525)
Q Consensus 429 ~Ar~r~~~~gl~d~-----------------D~-~v-----g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~ 485 (525)
.|+++++..++..- |. .. ..+++..+++++.++|||||++++.+.+.+.... .+.
T Consensus 85 ~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~ 162 (231)
T TIGR02752 85 VGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQ 162 (231)
T ss_pred HHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHH
Confidence 99999877665321 22 11 1356789999999999999999988766543211 000
Q ss_pred chhHHhhcccC-------------------CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 486 SSDFMKEYIFP-------------------GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 486 ~~~fi~kYIFP-------------------Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
...+..+++.| ...+|+..++.+.++++ ||++..
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~ 215 (231)
T TIGR02752 163 LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEA-GFKDVE 215 (231)
T ss_pred HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCeeE
Confidence 01111111111 12468999999999995 898653
No 11
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.03 E-value=1.1e-09 Score=109.01 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=85.3
Q ss_pred hHHHHhhhcccccchHHHHhccccccc--hhccc--cCCCeehhhc------HHHHHHhc-------CCEEEEEcCChHH
Q 043102 364 TQACRHISRHYDLSNELFCLFLDESLT--YSCAL--FKVREVIFLG------TIEVVKRT-------GCKYTGITLAEKQ 426 (525)
Q Consensus 364 ~~s~~nIa~hYDl~nd~y~l~Ld~~m~--ys~a~--f~~~rVLDIG------a~~lA~~~-------G~~VtGIdlS~eq 426 (525)
..-+.+++..||+.||..++....-|. +-.++ ....+|||++ |..+.++- +.+||.+|+|++|
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~m 142 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHM 142 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHH
Confidence 556788999999999998776663221 11111 1224999998 66666542 2699999999999
Q ss_pred HHHHHHHHHHcCCCCC--------Cc---------------ccCcc---cHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 427 LKYAGIKVKEADLERN--------DR---------------SFGHE---YMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 427 l~~Ar~r~~~~gl~d~--------D~---------------~vg~~---~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
++.+++|+++.++.+. |+ +.|.+ +.++.+++++|+|||||+|.+-+...-+
T Consensus 143 L~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 143 LAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 9999999988777554 22 45644 5788999999999999999998877655
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.97 E-value=4e-09 Score=109.86 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=87.6
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-------
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------- 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------- 444 (525)
++..+||||| +..+|+ .|++|+|||+|++|++.|+++++..++..+ |.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3445999999 677776 599999999999999999988765433111 44
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCC----CCCHHHHHHHHHhcCCcEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGC----LPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~----LPsl~~i~~~~~~a~gl~V~ 519 (525)
|+ .+...+++++.++|||||++++.++......|........++.+.+.+|++ +.+++++.+.++++ ||++.
T Consensus 209 eHv--~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a-Gf~i~ 285 (322)
T PLN02396 209 EHV--ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA-SVDVK 285 (322)
T ss_pred Hhc--CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc-CCeEE
Confidence 33 467899999999999999999998865432232111223444444444443 57899999999995 99987
Q ss_pred EE
Q 043102 520 LA 521 (525)
Q Consensus 520 ~~ 521 (525)
-.
T Consensus 286 ~~ 287 (322)
T PLN02396 286 EM 287 (322)
T ss_pred EE
Confidence 54
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.93 E-value=2.5e-09 Score=105.98 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~v 446 (525)
...+||||| +..+|+. |++|||+|+|++.++.|+.++.+.|+... |. ||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 345999999 8889985 99999999999999999999999888632 33 44
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCC-----CCHHHHHHHHHhcCCcEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL-----PSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~L-----Psl~~i~~~~~~a~gl~V~ 519 (525)
++-+.|++.|.++|||||.+++-+|......|-...-...++-+ ++|.|.- --.+|+...+.. +++.+.
T Consensus 138 --~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~-~~~~~~ 211 (243)
T COG2227 138 --PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLG-ANLKII 211 (243)
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhccc-CCceEE
Confidence 46678999999999999999999997655443322222333433 6776632 345566655555 355543
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.89 E-value=9.9e-09 Score=103.76 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-------------CCCC--Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-------------LERN--DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-------------l~d~--D~--------~vg~ 448 (525)
..+||||| +..+++.++++|+|+|+|++|++.|+++..... +.+. |. |++.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSY 132 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCH
Confidence 34999999 778887779999999999999999999865311 1111 33 3444
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhccc-CCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIF-PGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++...++++++++|||||++++..++..+.. ...+-+..|+- .+-.+++..++.+.++++ ||+++-..
T Consensus 133 ~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-GF~~v~~~ 201 (263)
T PTZ00098 133 ADKKKLFEKCYKWLKPNGILLITDYCADKIE-----NWDEEFKAYIKKRKYTLIPIQEYGDLIKSC-NFQNVVAK 201 (263)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEecccccc-----CcHHHHHHHHHhcCCCCCCHHHHHHHHHHC-CCCeeeEE
Confidence 5789999999999999999999887655321 11111222221 123568999999999995 99876554
No 15
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=2.1e-09 Score=107.92 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=115.7
Q ss_pred CccHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCc-eEeCCEEEEecChHHHHHhhcCC---CC
Q 043102 71 YPNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGS-REFYNSCVMALHAPDALKILGNQ---AT 146 (525)
Q Consensus 71 fPn~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~-~e~fD~VV~A~hadqAL~lL~~~---~t 146 (525)
=|-|+..=+-|.-|+ .+..++.. ..+-|. ..++++++++|. ...||.||+|.||+|+..||..+ ..
T Consensus 104 ~pgmsalak~LAtdL-----~V~~~~rV-t~v~~~----~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p 173 (331)
T COG3380 104 EPGMSALAKFLATDL-----TVVLETRV-TEVART----DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP 173 (331)
T ss_pred CcchHHHHHHHhccc-----hhhhhhhh-hhheec----CCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccch
Confidence 377888777776554 22221100 123333 248999996654 45699999999999999999632 33
Q ss_pred HHHHhhccCCc-----eeEeccC-CCCCCC-------CCCCcccccccc-CCCCC---------------CCCCCC----
Q 043102 147 FDETRTGGAFH-----DIFLHCD-KNSMPQ-------NPAAWSAWSFLG-SLDSK---------------NLGETS---- 193 (525)
Q Consensus 147 ~~E~~iLg~f~-----~~vlHtD-~s~mP~-------~~~aWaswNy~~-~~~~~---------------nl~~~~---- 193 (525)
.+=+..|..+. .++||-- ++..|- ...+|.+.|-.+ ..... ++....
T Consensus 174 ~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i 253 (331)
T COG3380 174 AALRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVI 253 (331)
T ss_pred HHHHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHH
Confidence 34455666666 4555543 444332 455677776332 21110 233211
Q ss_pred ---CCeEEEcCCCCCCcc---eeeEEEecCCCC--CHHHHHHHHHhhhhcCCCCeEEeccCCCCCCchhhhchHHHHHhh
Q 043102 194 ---LPYLVTLNPDHAPEH---TLLKWSTGPPVP--FVAASKASLELGHIQGRRGIWFRGAYQGYGFHEDGLKDLSINSCM 265 (525)
Q Consensus 194 ---~~~fvTLNp~~~p~~---il~~~~y~HPv~--~~~a~~aq~~l~~iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ 265 (525)
+.-|+++.++.-|++ +.++|+|.||.- ..+.+-|+. +-++++||+||.-|--|.++.||+++|++
T Consensus 254 ~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~~L~ad~-------~~~l~~cGDwc~GgrVEgA~LSGlAaA~~ 326 (331)
T COG3380 254 VALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGPPLDADR-------ELPLYACGDWCAGGRVEGAVLSGLAAADH 326 (331)
T ss_pred HHHHHhhhhccCCCCCcchHHHhhccccccccccccCCccccCC-------CCceeeecccccCcchhHHHhccHHHHHH
Confidence 223677777666664 778999999973 333333333 78999999999999999999999999999
Q ss_pred hc
Q 043102 266 TY 267 (525)
Q Consensus 266 ll 267 (525)
|+
T Consensus 327 i~ 328 (331)
T COG3380 327 IL 328 (331)
T ss_pred HH
Confidence 84
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.79 E-value=3.4e-08 Score=107.46 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=84.9
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--c---c-Ccc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--S---F-GHE 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~---v-g~~ 449 (525)
..+||||| ++.++++.|++|+|+|+|++|++.|++++...+.... |. . + ...
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccC
Confidence 34999999 7788887799999999999999999988753221000 22 0 1 134
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhccc-CCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIF-PGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.+.++++++++|||||++++.+....... ..+.+.+++. .|..+++..++.+.++++ ||+++..
T Consensus 347 d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~l~~a-GF~~i~~ 412 (475)
T PLN02336 347 DKPALFRSFFKWLKPGGKVLISDYCRSPGT------PSPEFAEYIKQRGYDLHDVQAYGQMLKDA-GFDDVIA 412 (475)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEEeccCCCC------CcHHHHHHHHhcCCCCCCHHHHHHHHHHC-CCeeeee
Confidence 678999999999999999999987654321 1122222322 355789999999999995 9998754
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.73 E-value=2.8e-08 Score=85.89 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=60.3
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc--ccC---
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR--SFG--- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~--~vg--- 447 (525)
+.+||||| +++++++ .+++|+|||+|+++++.|++++++.+..++ |. ..+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 35899999 7788873 699999999999999999999977666555 22 112
Q ss_pred -----cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 -----HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 -----~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+...++++.+.+.|+|||++++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1356788999999999999999974
No 18
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.69 E-value=4.2e-08 Score=98.29 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=89.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-----------CC---------Cccc------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-----------RN---------DRSF------ 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-----------d~---------D~~v------ 446 (525)
.+|||+| ++.||+ +|+.|+|||+|+++++.|+++.+...+. +. |+-|
T Consensus 91 ~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred ceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 4799999 889997 6999999999999999999995432111 11 4411
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CC----CCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GG----CLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg----~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..++.++|.+.+.++|||||+++|.+|...-.-|..-.-..+.+.+ |-| |+ -++++.++...+.++ ++.|+.+
T Consensus 170 HV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~~-~~~v~~v 247 (282)
T KOG1270|consen 170 HVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNAN-GAQVNDV 247 (282)
T ss_pred HHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHhc-Ccchhhh
Confidence 2357899999999999999999999987654333322233455555 555 43 348899999999885 8888766
Q ss_pred Ee
Q 043102 522 VS 523 (525)
Q Consensus 522 ~~ 523 (525)
+.
T Consensus 248 ~G 249 (282)
T KOG1270|consen 248 VG 249 (282)
T ss_pred hc
Confidence 54
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.66 E-value=2.1e-07 Score=90.05 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=76.9
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------cc
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--------~v 446 (525)
+..+|||+| ++.+|++ |++|+|+|+|+++++.|+++++..++..- |. ++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMFL 108 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhhC
Confidence 345999999 8888986 99999999999999999999988776421 22 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.....+.+++++.++|||||++++-+...++.. . +. .-+| +..+.+|+.+.++ ||++.--
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~-~~--------~~~~--~~~~~~el~~~~~---~~~~~~~ 168 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-P-CT--------VGFP--FAFKEGELRRYYE---GWEMVKY 168 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-C-CC--------CCCC--CccCHHHHHHHhC---CCeEEEe
Confidence 445688999999999999999766544333221 0 00 0122 3357788877664 6776543
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.65 E-value=1.8e-07 Score=93.80 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=81.0
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cccc------C
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DRSF------G 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~~v------g 447 (525)
.+||||| +..++++ |++|+|+|+|++|++.|++++++.|+.++ |..+ .
T Consensus 46 ~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred CEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 4999999 7788875 99999999999999999999988876533 2200 0
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhh--------cccCCCCCCCHHHHHHHHHhcCCcEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKE--------YIFPGGCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~k--------YIFPGg~LPsl~~i~~~~~~a~gl~V 518 (525)
..+...+++++.++|||||++++.........+... ....+.+.. ...|. ...+++++.+.++++ ||++
T Consensus 125 ~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~l~~~l~~a-Gf~~ 202 (255)
T PRK11036 125 VADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD-YPLDPEQVYQWLEEA-GWQI 202 (255)
T ss_pred hCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC-CCCCHHHHHHHHHHC-CCeE
Confidence 245678999999999999999987654321111100 001111111 11232 234689999999985 9998
Q ss_pred EE
Q 043102 519 NL 520 (525)
Q Consensus 519 ~~ 520 (525)
+-
T Consensus 203 ~~ 204 (255)
T PRK11036 203 MG 204 (255)
T ss_pred ee
Confidence 63
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.65 E-value=2.1e-07 Score=89.92 Aligned_cols=108 Identities=8% Similarity=-0.023 Sum_probs=76.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
..+||||| ++.+|++ |++|+|+|+|+++++.|+++++..++... |. ++..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccCCH
Confidence 35999999 8888885 99999999999999999999887766422 22 2334
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
++.+.++++++++|||||++++......+. +. .. .|..+..+.+++.+.++ ++++...
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~---~~--------~~~~~~~~~~el~~~f~---~~~~~~~ 167 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YP---CH--------MPFSFTFKEDELRQYYA---DWELLKY 167 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecccCC-CC---CC--------CCcCccCCHHHHHHHhC---CCeEEEe
Confidence 577899999999999999976654432221 10 00 13345678888887764 3555443
No 22
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.64 E-value=1.7e-07 Score=96.36 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=85.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------C----------c----c----cC
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------D----------R----S----FG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D----------~----~----vg 447 (525)
.+||||| ++.+++++ +++|+++|+ +++++.|++++++.|+.++ | . + .+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~ 229 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSAN 229 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCC
Confidence 4999999 77888874 689999998 7899999999999988765 2 2 1 12
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCC------CCHHHHHHHHHhcCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL------PSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~L------Psl~~i~~~~~~a~gl~V~~ 520 (525)
.+.....++++++.|||||+++|.++...+... ....++..++++.++. +...++.+.++++ ||+.+.
T Consensus 230 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a-Gf~~v~ 303 (306)
T TIGR02716 230 EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN----PNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL-GYKDVT 303 (306)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----chhhHHHHHHHHcccccccccCCCHHHHHHHHHHc-CCCeeE
Confidence 333467899999999999999999987765431 1223455555544332 3467899999995 997554
No 23
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.60 E-value=2.8e-07 Score=89.79 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=99.0
Q ss_pred chhHHHHhhhcccccchHHHHhccccccc----hhccccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLT----YSCALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~----ys~a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~ 429 (525)
.++..+.+++.+||..++........... ......+..+||||| +..+++..+ ++|+|+|+|+++++.
T Consensus 12 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 12 KVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 33556788888998765544333222110 011222345999999 677777653 899999999999999
Q ss_pred HHHHHHHcCCCCC------------------Ccc-----c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC
Q 043102 430 AGIKVKEADLERN------------------DRS-----F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL 485 (525)
Q Consensus 430 Ar~r~~~~gl~d~------------------D~~-----v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~ 485 (525)
|++++...++... |.. + ...+...+++.+.++|+|||++++-++..++... ...
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~ 169 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKK 169 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHH
Confidence 9999866444322 220 1 1346789999999999999999987776554321 000
Q ss_pred chhHHhhcc-------cCC------------CCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 486 SSDFMKEYI-------FPG------------GCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 486 ~~~fi~kYI-------FPG------------g~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
..++....+ +.+ ..+++..++...++++ ||++.-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~ 223 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEA-GFERVRY 223 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhC-CCceeee
Confidence 111111111 111 2457889999999996 9987543
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.60 E-value=2.6e-07 Score=91.57 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCeehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------
Q 043102 398 VREVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------- 444 (525)
..+||||| +..++++ .+++|+|+|+|++|++.|++++++.+...+ |.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 35999999 6667764 479999999999999999999887654322 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..++...++++++++|||||++++.+....
T Consensus 134 ~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 134 FLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 23344678999999999999999999876554
No 25
>PRK05785 hypothetical protein; Provisional
Probab=98.59 E-value=8.3e-08 Score=95.02 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=95.1
Q ss_pred chhHHHHhhhcccccchHHHHhccccccch-----hccc-cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHH
Q 043102 362 TLTQACRHISRHYDLSNELFCLFLDESLTY-----SCAL-FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKY 429 (525)
Q Consensus 362 ~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~y-----s~a~-f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~ 429 (525)
.++..++.++.+||..|.+.++..+..+.. ...+ -...+||||| +..++++.+.+|+|||+|++|++.
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 456789999999999998877666643311 1111 1245999999 777777657899999999999999
Q ss_pred HHHHHHH-------cCCCCC--Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc
Q 043102 430 AGIKVKE-------ADLERN--DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI 494 (525)
Q Consensus 430 Ar~r~~~-------~gl~d~--D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI 494 (525)
|+++... ..+.+. |. . + ...+.+..++++.|+|||. +++-++..++.... +....|..+++
T Consensus 90 a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~--~~~~~~y~~~~ 165 (226)
T PRK05785 90 NLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIK--RKYLSFYLRYI 165 (226)
T ss_pred HHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHH--HHHHHHHHHHH
Confidence 9987321 112222 44 1 1 1357889999999999993 33445555543211 11112222222
Q ss_pred cC-------C------------CCCCCHHHHHHHHHhcCC
Q 043102 495 FP-------G------------GCLPSLSRITSAMSAASR 515 (525)
Q Consensus 495 FP-------G------------g~LPsl~~i~~~~~~a~g 515 (525)
.| + ..+|+.+++.+.++++.+
T Consensus 166 ~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~ 205 (226)
T PRK05785 166 MPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYAD 205 (226)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 22 1 135888999999988533
No 26
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.58 E-value=3.6e-07 Score=88.12 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=97.6
Q ss_pred hHHHHhhhcccccchHHHHhccccccc-hhc---cccCCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHH
Q 043102 364 TQACRHISRHYDLSNELFCLFLDESLT-YSC---ALFKVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAG 431 (525)
Q Consensus 364 ~~s~~nIa~hYDl~nd~y~l~Ld~~m~-ys~---a~f~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar 431 (525)
...++.++++||+.|..+..+.+..+. ... ...+..+|||+| +..+++..+ ++++|+|+|+++++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 457889999999998887655442211 011 111345999999 667777655 69999999999999999
Q ss_pred HHHHHc-CCC-------C---C----Cc-c----c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 432 IKVKEA-DLE-------R---N----DR-S----F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 432 ~r~~~~-gl~-------d---~----D~-~----v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
++.... .+. + . |. . + ...+...+++.+.++|||||++++.....+.... ......+.
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~ 159 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFY 159 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHH
Confidence 987510 010 0 0 22 0 0 2456789999999999999999987775543211 00111111
Q ss_pred hhcccCC-------------------CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 491 KEYIFPG-------------------GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 491 ~kYIFPG-------------------g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
.+.++|- ..+++..++.+.++++ ||++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~ 207 (223)
T TIGR01934 160 LKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEA-GFEEVR 207 (223)
T ss_pred HHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHc-CCccce
Confidence 1112110 2356888999999995 898653
No 27
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.53 E-value=5.7e-08 Score=80.46 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=53.3
Q ss_pred hhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------ccCcccHHH
Q 043102 402 IFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------SFGHEYMEE 453 (525)
Q Consensus 402 LDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~vg~~~~~~ 453 (525)
|||| +..++++.+.+|+|+|+|+++++.|+++.+..++.-. |. ++ ++...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHHH
Confidence 7888 6667765589999999999999999999876653211 33 23 78999
Q ss_pred HHHHHHhccCCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVL 470 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~vi 470 (525)
+++++.|+|||||+++|
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=3e-07 Score=91.88 Aligned_cols=122 Identities=24% Similarity=0.226 Sum_probs=83.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC--C--------C-Cc-----cc-CcccHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE--R--------N-DR-----SF-GHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~--d--------~-D~-----~v-g~~~~~~ 453 (525)
..+||||| +..++++. +++|+|||+|++|++.|+++.....+. + . |. .+ -..+...
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~ 111 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDHLE 111 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCHHH
Confidence 35999999 77788764 689999999999999999986432211 0 0 33 11 1346789
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcc----hhcccCchhHHhhcccCC---CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDER----YNEFRLSSDFMKEYIFPG---GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~----~~~~~~~~~fi~kYIFPG---g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++++.++|||||.++++........ ........+|...+..++ ..+|+..++.+.+.++ |+.|..
T Consensus 112 ~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~ 184 (258)
T PRK01683 112 LFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPA-ACRVDI 184 (258)
T ss_pred HHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhC-CCceee
Confidence 99999999999999999743211111 111122345666665444 5778999999999886 666654
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.50 E-value=3.8e-07 Score=91.21 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=61.6
Q ss_pred CCeehhhc------HHHHHH---hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--------
Q 043102 398 VREVIFLG------TIEVVK---RTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~---~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------- 444 (525)
..+||||| +..+++ ..+++|+|||+|++|++.|+++++..++..+ |.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 34999999 556665 2479999999999999999999987666433 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
++.......++++++++|||||.+++.+...
T Consensus 137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 137 FLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 3334456789999999999999999987554
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.46 E-value=2.6e-06 Score=88.60 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=78.6
Q ss_pred cCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcC-----------CCC-----C-Cc--ccC--
Q 043102 396 FKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEAD-----------LER-----N-DR--SFG-- 447 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~g-----------l~d-----~-D~--~vg-- 447 (525)
.++.+||||| +..++.. |+ .|+|||.|+.|+..++...+..+ +++ . |. ..+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 4456999999 5666765 65 79999999999876543222111 111 0 44 111
Q ss_pred --cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh-hcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 --HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK-EYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 --~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~-kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
..+...++++++++|||||.+++.++.+.............+.+ +.++ .+||.+++...++++ ||+.+-.+.
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~---flpS~~~L~~~L~~a-GF~~V~i~~ 273 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY---FIPSVSALKNWLEKV-GFENFRILD 273 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc---cCCCHHHHHHHHHHC-CCeEEEEEe
Confidence 35678999999999999999999987654322111111111111 0112 579999999999995 999876543
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.45 E-value=1.9e-06 Score=89.80 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--cc----C
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--SF----G 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--~v----g 447 (525)
++.+||||| +.++++.....|+|||+|+.|+..++...+..+...+ |. .. .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 345999999 7788876334799999999998765544332221111 33 11 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC-CCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG-CLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg-~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
..+...++++++++|||||.+++.++......-........+ .+ +++. .+|+..++...++++ ||+++-..+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~--~~~~~~lps~~~l~~~L~~a-GF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AK--MRNVYFIPSVPALKNWLERA-GFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hc--CccceeCCCHHHHHHHHHHc-CCceEEEEe
Confidence 356789999999999999999998876543211000011111 11 2322 479999999999995 999876654
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.45 E-value=1.5e-06 Score=87.67 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----cc--
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR----SF-- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~----~v-- 446 (525)
..+||||| ++.+++..| .+|+|+|+|++|++.|+++.+..++..- |. .+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 45999999 455666544 4899999999999999999887765321 22 11
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
...+.+.+|+++.++|||||++++..+...+........ .+.-+..-.+...+..++.+.++++ ||.....
T Consensus 158 ~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~l~~a-Gf~~v~i 228 (272)
T PRK11873 158 LSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRN---DAELYAGCVAGALQEEEYLAMLAEA-GFVDITI 228 (272)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHH---hHHHHhccccCCCCHHHHHHHHHHC-CCCceEE
Confidence 124678899999999999999999887765432111100 0111100012345788899999885 8876543
No 33
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.42 E-value=8.4e-07 Score=88.95 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=72.5
Q ss_pred hHHHHhccccccchhccccC---------------CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHH
Q 043102 378 NELFCLFLDESLTYSCALFK---------------VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 378 nd~y~l~Ld~~m~ys~a~f~---------------~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~ 435 (525)
++.+.+.+||.|.+.++... ..+||||| ++.+++ .|+ +|+|+|+|+++++.|+++++
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHH
Confidence 44556778888777666543 23999999 555555 466 59999999999999999999
Q ss_pred HcCCCCC----------Cc---ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 436 EADLERN----------DR---SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 436 ~~gl~d~----------D~---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
..++.+. |. .+....+..+++++.++|||||++++..+.
T Consensus 164 ~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 164 LNGVELNVYLPQGDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 8887543 22 223345678899999999999999997653
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.41 E-value=1.1e-06 Score=87.96 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHH---cCCC----CC--Cc-----cc-CcccHHHHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKE---ADLE----RN--DR-----SF-GHEYMEEFF 455 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~---~gl~----d~--D~-----~v-g~~~~~~~f 455 (525)
..+||||| +..++++. +++|+|+|+|++|++.|+++-.. ..+. +. |. .+ -..+...++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~~l 109 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHADLL 109 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHHHHH
Confidence 35999999 67777763 78999999999999999875110 0000 00 44 00 124678999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchh-c---ccCchhHHh---hccc-CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYN-E---FRLSSDFMK---EYIF-PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~-~---~~~~~~fi~---kYIF-PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
++++++|||||+++++.....+.... . ......|-. ..-+ .+..+++..++.+.++++ ||.+..
T Consensus 110 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~ 181 (255)
T PRK14103 110 VRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA-GCKVDA 181 (255)
T ss_pred HHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC-CCeEEE
Confidence 99999999999999975432111110 0 001112321 1111 134568999999999996 998654
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.41 E-value=1.1e-06 Score=76.64 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc---ccCcc
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~---~vg~~ 449 (525)
..+||||| +..++++. +++|+|+|+|+.+++.|+++++..++... |. ..+..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 34899999 77888764 58999999999999999999887665422 22 11244
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEec
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.++++++.+.++|||||++++..++
T Consensus 100 ~~~~~l~~~~~~Lk~gG~li~~~~~ 124 (124)
T TIGR02469 100 LLQEILEAIWRRLRPGGRIVLNAIT 124 (124)
T ss_pred hHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6789999999999999999998763
No 36
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.40 E-value=6.4e-06 Score=88.69 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=96.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSLDS 186 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~~~ 186 (525)
++.|++.+|+...||+||+|+|++++.+||.+ ...+..+.|..++ .+.+.-|...++.. +..|-|+...+.
T Consensus 255 ~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~---~~~~g~l~~~~~ 330 (462)
T TIGR00562 255 NYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNSASSHLDKIHSPPVANVNLGFPEGSVDGE---LEGFGFLISRSS 330 (462)
T ss_pred cEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHHHHHHHhcCCCCceEEEEEEEchHHcCCC---CCceEEEccCCC
Confidence 67888888877889999999999999999974 5566677888877 44555443323221 111222211100
Q ss_pred C--------------CCCCCCCCeE-EEcCCC----------------------------CCCcc-eeeEEEecCCCCCH
Q 043102 187 K--------------NLGETSLPYL-VTLNPD----------------------------HAPEH-TLLKWSTGPPVPFV 222 (525)
Q Consensus 187 ~--------------nl~~~~~~~f-vTLNp~----------------------------~~p~~-il~~~~y~HPv~~~ 222 (525)
. +....+..++ +..... .+|.. .+.+|++.-|++++
T Consensus 331 ~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~ 410 (462)
T TIGR00562 331 KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHV 410 (462)
T ss_pred CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCC
Confidence 0 0000111222 122110 01333 55699999999998
Q ss_pred HHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 223 AASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 223 ~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.......++.. ++. ..+++.||+|+...--|+++.||.++|++++
T Consensus 411 g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 411 GHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVL 457 (462)
T ss_pred ChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHHHHH
Confidence 87666665553 333 3699999999987688999999999999984
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.38 E-value=1.2e-06 Score=87.21 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=94.0
Q ss_pred CchhHHHHhhhcccccchHHHHhccccccchhccccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH
Q 043102 361 NTLTQACRHISRHYDLSNELFCLFLDESLTYSCALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV 434 (525)
Q Consensus 361 N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~ 434 (525)
..+++++...+.+||..+.+.+...+.-...... -...+||||| +..+++ .|++|+|+|+|++|++.|+++.
T Consensus 7 ~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC
Confidence 3456777788888987655554443322211111 1234899999 556666 4899999999999999999885
Q ss_pred HHcCC-----C-----CC--Cc---c--c-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc-c
Q 043102 435 KEADL-----E-----RN--DR---S--F-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI-F 495 (525)
Q Consensus 435 ~~~gl-----~-----d~--D~---~--v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI-F 495 (525)
....+ + +. |. . + -..+...+++++.++|||||.+++.++.... +.... ..|..-.. .
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~--~~~~~~~~~~ 160 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELH--QAWQAVDERP 160 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHH--HHHHHhccCC
Confidence 32111 1 11 33 1 1 1356789999999999999999997665321 11110 11111111 1
Q ss_pred CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 496 PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 496 PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
.+..+++..++...+... ++.+..
T Consensus 161 ~~~~~~~~~~l~~~l~~~-~~~~~~ 184 (251)
T PRK10258 161 HANRFLPPDAIEQALNGW-RYQHHI 184 (251)
T ss_pred ccccCCCHHHHHHHHHhC-Cceeee
Confidence 234567888999888774 666544
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.35 E-value=3e-06 Score=86.64 Aligned_cols=106 Identities=10% Similarity=0.099 Sum_probs=74.5
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCcc
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGHE 449 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~~ 449 (525)
.+||||| ++++|++ |++|+|+|+|+++++.|++++++.++..+ |. ++..+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCCHH
Confidence 4899999 8888885 99999999999999999999988776322 33 23446
Q ss_pred cHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
+++.+++++.++|||||++++-.....+. +. .. .|..+..+.+|+.+.++. ++|..
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~---~~--------~p~~~~~~~~el~~~~~~---~~i~~ 256 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVCAMDTED-YP---CP--------MPFSFTFKEGELKDYYQD---WEIVK 256 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccccc-CC---CC--------CCCCcccCHHHHHHHhCC---CEEEE
Confidence 78999999999999999977643322211 10 00 233445667777766533 56554
No 39
>PLN02576 protoporphyrinogen oxidase
Probab=98.35 E-value=1.6e-05 Score=86.72 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=91.5
Q ss_pred EEEeCCCc-eEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCC---Ccc--------
Q 043102 114 TVVCGDGS-REFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPA---AWS-------- 176 (525)
Q Consensus 114 ~v~~~~g~-~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~---aWa-------- 176 (525)
.+.+.+|. ...||+||+|+|+.++.+||.+ ..++.++.|..++ .+.++-+...++.+.. .+.
T Consensus 274 ~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~ 352 (496)
T PLN02576 274 TYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP-KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPR 352 (496)
T ss_pred EEecCCCceeEEeCEEEECCCHHHHHHHhcc-cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccC
Confidence 33333553 5789999999999999999985 6777889999887 5556655443332100 011
Q ss_pred -------ccccccCCCCCCCCCCCCCeEE-Ec---------------------------CC-CC--CCcc-eeeEEEecC
Q 043102 177 -------AWSFLGSLDSKNLGETSLPYLV-TL---------------------------NP-DH--APEH-TLLKWSTGP 217 (525)
Q Consensus 177 -------swNy~~~~~~~nl~~~~~~~fv-TL---------------------------Np-~~--~p~~-il~~~~y~H 217 (525)
.|.|.....+ +..+.+..++. .. -+ .. +|+. ...+|++.-
T Consensus 353 ~~~~~~lg~~~~s~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~ 431 (496)
T PLN02576 353 KQGVKTLGTIYSSSLFP-DRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAI 431 (496)
T ss_pred CCCCceEEEEeecCcCC-CCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCccc
Confidence 1121110000 00000111111 11 01 11 1222 345788888
Q ss_pred CCCCHHHHHHHHHhhh-hcCC--CCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 218 PVPFVAASKASLELGH-IQGR--RGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 218 Pv~~~~a~~aq~~l~~-iqG~--~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
|+|++........+.. ++.. .++++||+|+...-.|+++.||.++|+.++
T Consensus 432 P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 484 (496)
T PLN02576 432 PQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVI 484 (496)
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHH
Confidence 9999877655444444 3333 689999999987789999999999999984
No 40
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.26 E-value=5e-06 Score=81.85 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH---------------cC-------C---C----CC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE---------------AD-------L---E----RN 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~---------------~g-------l---~----d~ 442 (525)
..+|||+| ++.+|++ |++|||||+|+..++.|.++... .. + . ..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 35999999 9999986 99999999999999986442100 00 0 0 00
Q ss_pred -----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhc
Q 043102 443 -----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513 (525)
Q Consensus 443 -----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a 513 (525)
|. |+..+.++.|++.+.++|||||++++.+....+..+ . -| -+.-+.+++.+.++.
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------~---gp-p~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----------A---GP-PFSVSPAEVEALYGG- 178 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------C---Cc-CCCCCHHHHHHHhcC-
Confidence 32 566777899999999999999998887765432210 0 02 145677888877764
Q ss_pred CCcEEEEE
Q 043102 514 SRLWYNLA 521 (525)
Q Consensus 514 ~gl~V~~~ 521 (525)
+++|...
T Consensus 179 -~~~i~~~ 185 (213)
T TIGR03840 179 -HYEIELL 185 (213)
T ss_pred -CceEEEE
Confidence 4565544
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.22 E-value=3.7e-06 Score=81.21 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccHH
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~~ 452 (525)
..+||||| ++.+|+. .+++|+|||+|++|++.|++++++.++++- |. .-...+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~~~ 125 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVASLS 125 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccCHH
Confidence 35999999 6666654 579999999999999999999999887532 22 11245689
Q ss_pred HHHHHHHhccCCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~ 472 (525)
++++.++++|||||++++..
T Consensus 126 ~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 126 DLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEe
Confidence 99999999999999999863
No 42
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.21 E-value=5.4e-06 Score=81.26 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+++|++||++++..+.|++.++++|++++ |+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 34999999 8888875 378999999999999999999999999876 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcc
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDER 479 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~ 479 (525)
...+.+|..||+.+.++|+|||.++++.+......
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V 162 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSV 162 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGG
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEcccccccee
Confidence 11367899999999999999999999988776543
No 43
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.21 E-value=3.1e-06 Score=82.17 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred cccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR-------- 444 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~-------- 444 (525)
.+.+..++|||| |++||++ |..||++|+|+.-++.+++.+++.+++.+ |.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEec
Confidence 344556999999 9999996 99999999999999999999988888643 22
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..+..+..++.+...++|||.+++.+....
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 33467889999999999999999999776543
No 44
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.20 E-value=3.5e-06 Score=83.32 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=68.6
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc-----------------cc
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-------DR-----------------SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~-----------------~v 446 (525)
.+||||| ++.+|... ..++|+||+++++.+.|++.++++|++++ |+ ..
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDa 140 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA 140 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeC
Confidence 4999999 78888652 57999999999999999999999999886 33 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+.+|+.||+.+.++|+|||.++++.+..+.
T Consensus 141 dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 141 DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 4789999999999999999999999987764
No 45
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.20 E-value=3.7e-06 Score=86.81 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCCCHHHHhhccCCc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQATFDETRTGGAFH 157 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~t~~E~~iLg~f~ 157 (525)
+..|.++.++..+.+|..+. .+|.|...+|+...||+||+|++...+.+ .+........++.+..++
T Consensus 220 ~~~g~~i~l~~~V~~I~~~~------------~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~ 287 (450)
T PF01593_consen 220 EELGGEIRLNTPVTRIERED------------GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLP 287 (450)
T ss_dssp HHHGGGEESSEEEEEEEEES------------SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEE
T ss_pred hhcCceeecCCcceeccccc------------cccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccc
Confidence 33578898888888887633 37889999998899999999999999996 444323333556666666
Q ss_pred -----eeEeccCCCCCCCC
Q 043102 158 -----DIFLHCDKNSMPQN 171 (525)
Q Consensus 158 -----~~vlHtD~s~mP~~ 171 (525)
.++++-|...++..
T Consensus 288 ~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 288 YSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp EEEEEEEEEEESSGGGGST
T ss_pred cCcceeEEEeeeccccccc
Confidence 89999999988875
No 46
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.20 E-value=4.4e-06 Score=81.67 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=79.2
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------cc
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SF 446 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~v 446 (525)
.+..+||||| +..+++. +.+|+|+|+|+++++.|++++...+..++ |. |.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 3456999999 6777764 88999999999999999999977654322 32 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC------CCCCCHHHHHHHHHhcCCcEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG------GCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG------g~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..++....++++.+++++++.+.+. +...+. ....++.+ .||+ -+.++.+++.+.++++ ||++..
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~~----~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~v~~ 203 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTFA----PKTAWL---AFLKMIGE-LFPGSSRATSAYLHPMTDLERALGEL-GWKIVR 203 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEC----CCchHH---HHHHHHHh-hCcCcccccceEEecHHHHHHHHHHc-Cceeee
Confidence 4456788899999999977655432 111110 11223322 2433 3456889999999885 999875
Q ss_pred E
Q 043102 521 A 521 (525)
Q Consensus 521 ~ 521 (525)
.
T Consensus 204 ~ 204 (219)
T TIGR02021 204 E 204 (219)
T ss_pred e
Confidence 4
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.18 E-value=3.7e-06 Score=76.65 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-------C-CC-Cc--------ccCcccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-------E-RN-DR--------SFGHEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-------~-d~-D~--------~vg~~~~~~~ 454 (525)
..+||||| +..+++ .|++|+|+|+|+.+++. .+...... . .. |. |+ ++...+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~-~~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~--~d~~~~ 97 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK-RGFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL--PDPEEF 97 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH-TTSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS--SHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHH-hCCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhc--ccHHHH
Confidence 45999999 566655 59999999999999988 11000000 0 00 33 33 478999
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC---CCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP---GGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP---Gg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
++++.++|||||++++.+....... . .....| .|..+ ....-+.+++...++++ ||+|+-
T Consensus 98 l~~l~~~LkpgG~l~~~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~-G~~iv~ 160 (161)
T PF13489_consen 98 LKELSRLLKPGGYLVISDPNRDDPS-P--RSFLKW--RYDRPYGGHVHFFSPDELRQLLEQA-GFEIVE 160 (161)
T ss_dssp HHHHHHCEEEEEEEEEEEEBTTSHH-H--HHHHHC--CGTCHHTTTTEEBBHHHHHHHHHHT-TEEEEE
T ss_pred HHHHHHhcCCCCEEEEEEcCCcchh-h--hHHHhc--CCcCccCceeccCCHHHHHHHHHHC-CCEEEE
Confidence 9999999999999999988754211 0 001111 22222 23456899999999996 999874
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.13 E-value=1.5e-05 Score=82.97 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC------------------CC-Cc--------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE------------------RN-DR-------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~------------------d~-D~-------- 444 (525)
..+||||| ++.++++ |++|+|+|+|++|++.|++++++.+.. .. |.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~ 223 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLI 223 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEE
Confidence 34999999 7888875 999999999999999999998765211 00 33
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC------CCCCHHHHHHHHHhcCCcEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG------CLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg------~LPsl~~i~~~~~~a~gl~V 518 (525)
|+..+.....++.+.+ +++||.+ |.. .+...+ + .....+.+ +|||. ++.+.+++.+.++++ ||+|
T Consensus 224 H~p~~~~~~ll~~l~~-l~~g~li-Is~--~p~~~~--~-~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL~~A-Gf~v 294 (315)
T PLN02585 224 HYPQDKADGMIAHLAS-LAEKRLI-ISF--APKTLY--Y-DILKRIGE-LFPGPSKATRAYLHAEADVERALKKA-GWKV 294 (315)
T ss_pred ecCHHHHHHHHHHHHh-hcCCEEE-EEe--CCcchH--H-HHHHHHHh-hcCCCCcCceeeeCCHHHHHHHHHHC-CCEE
Confidence 3334445566777765 4555554 422 121110 0 01111222 46653 456899999999995 9998
Q ss_pred EEE
Q 043102 519 NLA 521 (525)
Q Consensus 519 ~~~ 521 (525)
...
T Consensus 295 ~~~ 297 (315)
T PLN02585 295 ARR 297 (315)
T ss_pred EEE
Confidence 643
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.12 E-value=1.8e-05 Score=83.21 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=75.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC------------CC--Ccc-----c-CcccH
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE------------RN--DRS-----F-GHEYM 451 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~------------d~--D~~-----v-g~~~~ 451 (525)
.+||||| ++.+++.. +.+|+|+|+|++|++.|+++.+..++. +. |.. + ...+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~ 194 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP 194 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCH
Confidence 4999999 56667654 579999999999999999986432221 11 331 1 12456
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-CCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-GGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-Gg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+..++++.++|||||++++-....++ .|+.++.-. ....|+.+++.+.++++ ||+.+-.
T Consensus 195 ~~~L~e~~rvLkPGG~LvIi~~~~p~----------~~~~r~~~~~~~~~~t~eEl~~lL~~a-GF~~V~i 254 (340)
T PLN02490 195 QRGIKEAYRVLKIGGKACLIGPVHPT----------FWLSRFFADVWMLFPKEEEYIEWFTKA-GFKDVKL 254 (340)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecCcc----------hhHHHHhhhhhccCCCHHHHHHHHHHC-CCeEEEE
Confidence 78999999999999999875433222 122221100 11347899999999995 9986543
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.12 E-value=1.2e-05 Score=77.61 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=61.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc---cc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR---SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~---~v 446 (525)
+..+|||+| ++.+|+.. +++|+++|+|+++++.|+++++..|+.++ |. ..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 445999999 66776643 47999999999999999999988875433 22 12
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+...+..+++.+.++|||||+++++.+
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 356788999999999999999998665
No 51
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.11 E-value=7.3e-06 Score=76.82 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=63.5
Q ss_pred EEEcCChHHHHHHHHHHHHcC--CCCC------------------Cc---ccC---cccHHHHHHHHHhccCCCcEEEEE
Q 043102 418 TGITLAEKQLKYAGIKVKEAD--LERN------------------DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 418 tGIdlS~eql~~Ar~r~~~~g--l~d~------------------D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+|||+|++|++.|+++.+..+ ...+ |. ..+ ..+...++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 599999999999988865322 1111 33 111 357889999999999999999999
Q ss_pred EecCCCcchhccc-------------------CchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEE
Q 043102 472 FISIPDERYNEFR-------------------LSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 472 ~i~~~~~~~~~~~-------------------~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V 518 (525)
++..++..+.... ....++...| ...|+.+++.+.++++ ||.-
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si---~~f~~~~el~~ll~~a-GF~~ 142 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSI---NGYLTGEELETLALEA-GFSS 142 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHH---HHCcCHHHHHHHHHHc-CCCc
Confidence 9887654322100 0001111111 1458899999999985 8874
No 52
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.09 E-value=2.8e-05 Score=76.86 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=71.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC--------------C----------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE--------------R---------------- 441 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~--------------d---------------- 441 (525)
..+|||+| ++.||++ |++|+|||+|+.-++.|.++ .++. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35999999 8999985 99999999999999976432 1111 0
Q ss_pred --C-----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHH
Q 043102 442 --N-----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAM 510 (525)
Q Consensus 442 --~-----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~ 510 (525)
. |. |+..+.+++|++.+.++|||||+.++-+....+... .. .| +.-+.+++.+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~----------~g--Pp--~~~~~~el~~~~ 179 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL----------AG--PP--FSVSDEEVEALY 179 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC----------CC--CC--CCCCHHHHHHHh
Confidence 0 22 566777899999999999999976654444332210 00 11 356788888877
Q ss_pred HhcCCcEEEEEE
Q 043102 511 SAASRLWYNLAV 522 (525)
Q Consensus 511 ~~a~gl~V~~~~ 522 (525)
+. +++|....
T Consensus 180 ~~--~~~i~~~~ 189 (218)
T PRK13255 180 AG--CFEIELLE 189 (218)
T ss_pred cC--CceEEEee
Confidence 54 36666543
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.08 E-value=1e-05 Score=77.64 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc--ccCcccHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR--SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~--~vg~~~~~ 452 (525)
..+||||| ++.+|+.. +++|+|||+|++|++.|++++++.++++- |. .-+..+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 45999999 66767543 57999999999999999999988877432 22 11245788
Q ss_pred HHHHHHHhccCCCcEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq 471 (525)
.+++.+.++|||||++++.
T Consensus 123 ~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 9999999999999999975
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.07 E-value=1.4e-05 Score=76.33 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc-ccC--cccHH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR-SFG--HEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~-~vg--~~~~~ 452 (525)
..+||||| ++.++++. +++|+++|+|+++++.|+++++..++.+- |. .++ ..++.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~~ 111 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNLT 111 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCHH
Confidence 34999999 67777764 58999999999999999999887665321 33 111 34688
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+++.+.++|||||+++++.+.
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEec
Confidence 9999999999999999997654
No 55
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.05 E-value=1.6e-05 Score=76.61 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=60.8
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------ccCccc
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SFGHEY 450 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~vg~~~ 450 (525)
+.+|||+| ++.+++. .+++|++||+|+++++.|++++++.++.+- |+ ..+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~ 120 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGGRP 120 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECCcC
Confidence 35999999 6677754 368999999999999999999988776421 22 112346
Q ss_pred HHHHHHHHHhccCCCcEEEEEEec
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+..+++++.++|||||++++....
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeec
Confidence 789999999999999999998764
No 56
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.04 E-value=0.00011 Score=78.45 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=88.0
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCC--CCCCCCC----------
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNS--MPQNPAA---------- 174 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~--mP~~~~a---------- 174 (525)
+|.|.+.+|+.+.||+||+|+++.++++++.+ +. -.+.+..++ .+.+--|... .|.....
T Consensus 251 ~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~-~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (451)
T PRK11883 251 GYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA-PP--AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTI 327 (451)
T ss_pred eEEEEECCCCEEEcCEEEECCCHHHHHHhccC-hh--HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcE
Confidence 67888888888999999999999999999873 32 244555555 4444444432 1110000
Q ss_pred -ccccccccCCCCCCCCCCCCCeEE-EcC-C---------------------------CCCCcc-eeeEEEecCCCCCHH
Q 043102 175 -WSAWSFLGSLDSKNLGETSLPYLV-TLN-P---------------------------DHAPEH-TLLKWSTGPPVPFVA 223 (525)
Q Consensus 175 -WaswNy~~~~~~~nl~~~~~~~fv-TLN-p---------------------------~~~p~~-il~~~~y~HPv~~~~ 223 (525)
+..|+-... + +..+.+..++. ..+ + ...|.. ...+|.+.-|.+.+.
T Consensus 328 ~~~~~~s~~~--~-~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~ 404 (451)
T PRK11883 328 TACTWTSKKW--P-HTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVG 404 (451)
T ss_pred EEEEeEcCcC--C-CCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCcc
Confidence 001110000 0 01000111111 110 1 001112 445889999998887
Q ss_pred HHHHHHHhhh-hcCCCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 224 ASKASLELGH-IQGRRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 224 a~~aq~~l~~-iqG~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.......+.. +..-.+++|||+|+..+--|+++.||..+|+.++
T Consensus 405 ~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 405 HIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred HHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHH
Confidence 6555544443 3223589999999986679999999999999873
No 57
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.02 E-value=1.3e-05 Score=82.23 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=59.3
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccHH
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~~ 452 (525)
.+|||+| ++.+++. | .+|+|+|+|+.+++.|+++++..++.++ |. .+....+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l~ 239 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVIK 239 (288)
T ss_pred CEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHHH
Confidence 4999999 6666664 5 4999999999999999999988777554 11 11234567
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.+++++.++|||||++++..+.
T Consensus 240 ~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 240 ELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeCc
Confidence 8999999999999999987664
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.01 E-value=4.8e-06 Score=81.44 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~~~ 450 (525)
+..+||||| +..+|+.. .++|+|||+|+++++.|++++++.|+..- |. .+. ..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~-~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT-AA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc-CC
Confidence 345999999 66777753 34799999999999999999998887422 22 111 11
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-cCchhHHhhcccCCCCCCCH
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-RLSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~~~~~fi~kYIFPGg~LPsl 503 (525)
...+.+.+.+.|||||++++.... .......+ +....|..+.++|..++|-.
T Consensus 156 ~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 208 (215)
T TIGR00080 156 GPKIPEALIDQLKEGGILVMPVGE-YLQVLKRAEKRGGEIIIKDVEPVAFVPLV 208 (215)
T ss_pred cccccHHHHHhcCcCcEEEEEEcC-CceEEEEEEEeCCEEEEEEeeeEEEEeCC
Confidence 344567788999999999986544 33332222 23456888888888887754
No 59
>PRK08317 hypothetical protein; Provisional
Probab=97.99 E-value=4e-05 Score=74.20 Aligned_cols=121 Identities=15% Similarity=0.044 Sum_probs=73.7
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-c----c-
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-S----F- 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-~----v- 446 (525)
+..+||||| +..+++.. +++|+|+|+|+++++.|+++....+-... |. + +
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhh
Confidence 345999999 67777765 47999999999999999998322111000 22 0 1
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc-c-CchhHHhhcccCCC-CCCCHHHHHHHHHhcCCcEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF-R-LSSDFMKEYIFPGG-CLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~-~-~~~~fi~kYIFPGg-~LPsl~~i~~~~~~a~gl~V~ 519 (525)
...+...+++++.++|||||.+++.........+... . ....++..+ .+.. ...+..++.+.++++ ||+++
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a-Gf~~~ 172 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW-SDHFADPWLGRRLPGLFREA-GLTDI 172 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHc-CCCce
Confidence 1357889999999999999999987653221111100 0 011122222 1111 122345777788885 88654
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.98 E-value=6.8e-05 Score=71.07 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------ccC-
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------SFG- 447 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~vg- 447 (525)
+..+|||+| ++.+++. +.+|+|+|+|+++++.|+++++..++... |. +..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence 345899999 6677765 56999999999999999999876654321 22 110
Q ss_pred ------------------cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 ------------------HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 ------------------~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..-+.++++++.++|||||++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 11257889999999999999988653
No 61
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.97 E-value=2.1e-05 Score=72.34 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=61.1
Q ss_pred Ceehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------C--------c--c---c-
Q 043102 399 REVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN----------D--------R--S---F- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------D--------~--~---v- 446 (525)
.+|||+| +..++++ .+++|+|||+|++|++.|++++++.+++.- + . . .
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~ 84 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGVLH 84 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEESTGG
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCchh
Confidence 4899999 7777743 378999999999999999999998887621 2 1 0 0
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
...+...+++++.++||+||.+++....
T Consensus 85 ~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 85 HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1345678999999999999999998876
No 62
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.97 E-value=8.9e-06 Score=69.71 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=50.6
Q ss_pred ehhhc------HHHHHHhc--C--CEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---------c
Q 043102 401 VIFLG------TIEVVKRT--G--CKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---------S 445 (525)
Q Consensus 401 VLDIG------a~~lA~~~--G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---------~ 445 (525)
|||+| +..+++.. + .+++|||+|+++++.|+++.++.+..-+ |. |
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 78999 55666543 4 8999999999999999999988665322 22 4
Q ss_pred cCcccHHHHHHHHHhccCCCc
Q 043102 446 FGHEYMEEFFGCCESLIAKDG 466 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG 466 (525)
+..+....+|+++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 456778999999999999998
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.96 E-value=6.9e-05 Score=73.64 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=79.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc-----c-Cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS-----F-GH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~-----v-g~ 448 (525)
..+||||| +..+++ .+++|+|+|+|+++++.|++++...++... |.. + ..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 45899999 666676 489999999999999999998876554211 221 1 13
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC-----CCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP-----GGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP-----Gg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.+...+++.+.++|+|||++++..+......+........++.. +.| ...+++..++.+.++++ ||++...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~v~~ 203 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLR-MLPKGTHDYKKFIKPSELAAWLRQA-GLEVQDI 203 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhh-hcCcccCchhhcCCHHHHHHHHHHC-CCeEeee
Confidence 46788999999999999999987653221111000000111111 111 23467888999999995 9997643
No 64
>PLN02476 O-methyltransferase
Probab=97.96 E-value=7.4e-05 Score=76.55 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+.+|+++|.+++.++.|++.++++|++++ |+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 34999999 7888864 256899999999999999999999999865 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
...+++|..||+.+.++|+|||.++++.+.....
T Consensus 199 FIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 199 FVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred EECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 0124679999999999999999999998876543
No 65
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.95 E-value=6.4e-05 Score=75.00 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=65.1
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------ 444 (525)
...+||||| ++.+|+.. +++|+++|++++.++.|++++++.|++++ |+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 345999999 56666542 57999999999999999999999999765 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
...++.|..|+..+.++|||||.++++.+...
T Consensus 148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 11246789999999999999999999887654
No 66
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.93 E-value=0.00027 Score=76.47 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=91.2
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCC--CCCCCCCCccccccccCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKN--SMPQNPAAWSAWSFLGSL 184 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s--~mP~~~~aWaswNy~~~~ 184 (525)
++.|.+.+|....+|+||+|++++++.+||.+ +.. .+.+..++ .++++-|.. ..|..- +-|+.+.
T Consensus 256 ~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~-~~l--~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g-----~G~l~~~ 327 (463)
T PRK12416 256 RYEISFANHESIQADYVVLAAPHDIAETLLQS-NEL--NEQFHTFKNSSLISIYLGFDILDEQLPADG-----TGFIVTE 327 (463)
T ss_pred EEEEEECCCCEEEeCEEEECCCHHHHHhhcCC-cch--hHHHhcCCCCceEEEEEEechhhcCCCCCc-----eEEEeeC
Confidence 57888888877889999999999999999974 432 22345554 666676633 223211 1111111
Q ss_pred CC----------C----CCCCCCCCeEEEc-----CCCC---------------------------CCcc-eeeEEEecC
Q 043102 185 DS----------K----NLGETSLPYLVTL-----NPDH---------------------------APEH-TLLKWSTGP 217 (525)
Q Consensus 185 ~~----------~----nl~~~~~~~fvTL-----Np~~---------------------------~p~~-il~~~~y~H 217 (525)
+. + +... +.++.+++ ++.. +|.. .+.+|.+..
T Consensus 328 ~~~~~~~~~~~~s~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~ 406 (463)
T PRK12416 328 NSDLHCDACTWTSRKWKHTSG-KQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLM 406 (463)
T ss_pred CCCCeEEEEEeecCCCCCcCC-CCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccC
Confidence 00 0 1111 23333332 1110 1112 455888889
Q ss_pred CCCCHHHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 218 PVPFVAASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 218 Pv~~~~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
|+|.+...+..+.+.. ++. ..++++||+|+...--|+++.||.++|+.++
T Consensus 407 P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 407 PKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEII 458 (463)
T ss_pred CCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHH
Confidence 9998887666555553 333 3799999999876567999999999999984
No 67
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.88 E-value=9.9e-05 Score=71.82 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=77.8
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-CC-----------------Ccc-----c-C
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-RN-----------------DRS-----F-G 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-d~-----------------D~~-----v-g 447 (525)
..+||||| +..+++ .+++|+|+|+|+++++.|++++...++. .. |.. + .
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 45999999 566666 4889999999999999999998776552 11 220 0 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC----CCCCCHHHHHHHHHhcCCcEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG----GCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG----g~LPsl~~i~~~~~~a~gl~V~ 519 (525)
..+...+++.+.++|+|||.+++.........+.......+++.....++ ..+.+..++.+.++++ ||+|.
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-G~~i~ 199 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA-GLRVK 199 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc-CCeee
Confidence 34678899999999999999988654322111100000011221111111 2345788899999985 99985
No 68
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.84 E-value=7.3e-05 Score=72.96 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc--------ccCc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR--------SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~--------~vg~ 448 (525)
..+||||| +..+++. +++|+|+|+|+++++.|+++....++.++ |. |+..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~ 142 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQ 142 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCH
Confidence 34999999 6777775 88999999999999999999887766322 32 3344
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCC------CCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPG------GCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPG------g~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.....++.+.+++++++.+.+ . .....+ ....++.+ .||+ ....+..++.+.++++ ||++...
T Consensus 143 ~~~~~~l~~l~~~~~~~~~i~~--~-~~~~~~----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~ 212 (230)
T PRK07580 143 EDAARMLAHLASLTRGSLIFTF--A-PYTPLL----ALLHWIGG-LFPGPSRTTRIYPHREKGIRRALAAA-GFKVVRT 212 (230)
T ss_pred HHHHHHHHHHHhhcCCeEEEEE--C-CccHHH----HHHHHhcc-ccCCccCCCCccccCHHHHHHHHHHC-CCceEee
Confidence 5677888999888765444332 1 111111 11222222 2332 3445778899988885 9997654
No 69
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.84 E-value=2.3e-06 Score=72.78 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=45.8
Q ss_pred hhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------Cc--------ccC
Q 043102 402 IFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------DR--------SFG 447 (525)
Q Consensus 402 LDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------D~--------~vg 447 (525)
|||| +..++++ .+.++||+|+|+.|++.|++++.+.+.... |. |+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 6888 4455554 478999999999999999999988663221 22 33
Q ss_pred cccHHHHHHHHHhccCCCcEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~ 468 (525)
++.+.+++.++++|||||++
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 78899999999999999986
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.81 E-value=3.8e-05 Score=74.06 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=57.6
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc------------------ccCc
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR------------------SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~------------------~vg~ 448 (525)
++||||| +..+|++ .+++|+|||+|+++++.|++++++.++..- |. +.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 4999999 6677776 378999999999999999999988776421 11 1110
Q ss_pred c-----c------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 E-----Y------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~-----~------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. + .+.+++++.++|||||.+++.+-
T Consensus 98 pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 98 PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 0 0 26799999999999999988753
No 71
>PRK07233 hypothetical protein; Provisional
Probab=97.81 E-value=0.00052 Score=72.74 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCCCCCCCCCccccccccCC--
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQNPAAWSAWSFLGSL-- 184 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~~~~aWaswNy~~~~-- 184 (525)
++.+...+|....+|+||+|+++.++.+||.. ..+..++.+..+. .+.++-|..+.+ ..|..+......
T Consensus 230 ~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~ 305 (434)
T PRK07233 230 GVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGAPFG 305 (434)
T ss_pred ceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCCCcc
Confidence 34444456667889999999999999999963 4444445565555 556776665433 122211000000
Q ss_pred ---CCCCCCC----CCCCe-EE--EcCCCCC---------------------C----cc----eeeEEEecCCCCCHHHH
Q 043102 185 ---DSKNLGE----TSLPY-LV--TLNPDHA---------------------P----EH----TLLKWSTGPPVPFVAAS 225 (525)
Q Consensus 185 ---~~~nl~~----~~~~~-fv--TLNp~~~---------------------p----~~----il~~~~y~HPv~~~~a~ 225 (525)
...|..+ ..++. .+ ..++..+ | +. -+.+|.|..|.+++...
T Consensus 306 ~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~ 385 (434)
T PRK07233 306 GVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYL 385 (434)
T ss_pred eEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchh
Confidence 0001110 01222 11 1221110 1 11 22356778888765522
Q ss_pred HHHHHhhhh-cCCCCeEEeccCCCC---CCchhhhchHHHHHhhhc
Q 043102 226 KASLELGHI-QGRRGIWFRGAYQGY---GFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 226 ~aq~~l~~i-qG~~~~~fcGay~g~---GfHEdg~~Sgl~aA~~ll 267 (525)
..+..+ +...+++|||+++.+ +.-|+|+.||..||+.++
T Consensus 386 ---~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~ 428 (434)
T PRK07233 386 ---DKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREIL 428 (434)
T ss_pred ---hcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHh
Confidence 223333 345899999997532 279999999999999984
No 72
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.76 E-value=7.8e-05 Score=75.18 Aligned_cols=80 Identities=6% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
..+||||| ++.+|+. .+++|++++.+++..+.|++.++++|+.++ |+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 34999999 7777764 368999999999999999999999999876 22
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
...+++|..||+.+.++|+|||.++++.+....
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 112567999999999999999999999886654
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.75 E-value=6e-05 Score=73.40 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-ccCcc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-SFGHE 449 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-~vg~~ 449 (525)
++.+||||| +..+++.. +++|+|+|+|+++++.|+++++..++.++ |. .+. .
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~-~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT-A 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc-c
Confidence 345999999 55666653 47999999999999999999988776532 22 111 1
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
-...+-+++.+.|||||++++..
T Consensus 151 ~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcchhhHHHHHhcCcCcEEEEEE
Confidence 12344578899999999998854
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=97.73 E-value=0.00027 Score=66.41 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=57.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------C-----------ccc-------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-------D-----------RSF------- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D-----------~~v------- 446 (525)
..+|||+| +..++++ +++|+|+|+|+++++.|+++++..++.++ | ..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcCC
Confidence 45899999 6777876 99999999999999999999887766531 1 100
Q ss_pred --------------------CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 --------------------GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 --------------------g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+...++.+++++.++|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 01225678999999999999988753
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=97.71 E-value=0.0001 Score=76.08 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCeehhhc-------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHH-cCCCCC------------------Cc----
Q 043102 397 KVREVIFLG-------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKE-ADLERN------------------DR---- 444 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~-~gl~d~------------------D~---- 444 (525)
...+||||| ++-++++ .+++++|+|+|+++++.|++.++. .|+.++ |.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 335999999 5555543 478999999999999999999964 777654 22
Q ss_pred -ccC--cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 -SFG--HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 -~vg--~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++ .++..++++.+.+.|+|||.+++..
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 223 4789999999999999999999986
No 76
>PRK06202 hypothetical protein; Provisional
Probab=97.71 E-value=9e-05 Score=73.14 Aligned_cols=118 Identities=9% Similarity=0.131 Sum_probs=73.9
Q ss_pred Ceehhhc------HHHHHHh-----cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc--------c
Q 043102 399 REVIFLG------TIEVVKR-----TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR--------S 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-----~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~--------~ 445 (525)
.+||||| +..+++. .+++|+|+|+|++|++.|+++.+..++... |. |
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh 141 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHH 141 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeec
Confidence 4999999 5555542 246999999999999999998754333211 33 4
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccC-chhHHh-hcccCCC-----CCCCHHHHHHHHHhcCCcEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRL-SSDFMK-EYIFPGG-----CLPSLSRITSAMSAASRLWY 518 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~-~~~fi~-kYIFPGg-----~LPsl~~i~~~~~~a~gl~V 518 (525)
+..+....+++++.++++ |.+++..+..+...|..+.. ...+.+ .++-..+ ..++.+|+.+.+++ ||++
T Consensus 142 ~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~--Gf~~ 217 (232)
T PRK06202 142 LDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ--GWRV 217 (232)
T ss_pred CChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC--CCeE
Confidence 444456789999999998 56666666554322211111 111111 1111111 34788899998887 8987
Q ss_pred EE
Q 043102 519 NL 520 (525)
Q Consensus 519 ~~ 520 (525)
..
T Consensus 218 ~~ 219 (232)
T PRK06202 218 ER 219 (232)
T ss_pred Ee
Confidence 64
No 77
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.70 E-value=8.4e-05 Score=72.27 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc---ccCc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR---SFGH 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~---~vg~ 448 (525)
.+||||| +..+++.. +++|+|||+|+++++.|+++++..++..- |. ....
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~ 121 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD 121 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC
Confidence 4899999 66777653 67999999999999999999887665311 11 1010
Q ss_pred -----------ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 -----------EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 -----------~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
...+.+++++.++|||||++++.+
T Consensus 122 p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 122 PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 015789999999999999999864
No 78
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.67 E-value=0.00018 Score=75.73 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCCCC
Q 043102 118 GDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDKNS 167 (525)
Q Consensus 118 ~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~ 167 (525)
.+|+...+|+||+|++++++.+||.. ++.++.|..++ .++++-|..+
T Consensus 236 ~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 236 SGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAV 287 (419)
T ss_pred cCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCc
Confidence 35666789999999999999999963 24555677766 6778888766
No 79
>PRK04266 fibrillarin; Provisional
Probab=97.67 E-value=0.0003 Score=70.04 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc-CC-------C---------CC-Cc--c-cCc
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA-DL-------E---------RN-DR--S-FGH 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~-gl-------~---------d~-D~--~-vg~ 448 (525)
+..+|||+| +..+++.. +.+|+|+|+|++|++.+.+++++. ++ . +. |. | +..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~ 151 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQ 151 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCC
Confidence 345999999 77778764 369999999999999887776542 11 0 01 33 1 221
Q ss_pred c-cHHHHHHHHHhccCCCcEEEEE
Q 043102 449 E-YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~-~~~~~f~~i~r~LkpGG~~viq 471 (525)
. ....+++++.++|||||+++|.
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 2245689999999999999985
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.65 E-value=9e-05 Score=64.47 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=56.8
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc------cc
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR------SF 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~------~v 446 (525)
+|||+| ++.+++. + .+|+|+|++++.++.|+.+++..+++++ |. .+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~-~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRR-GAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEETSTTCHHHHHHHHH-CTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred EEEEcCcchHHHHHHHHHH-CCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 799999 5555654 6 9999999999999999999999888655 11 11
Q ss_pred C--------cccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 G--------HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g--------~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
. .+.+..+++++.++|||||.+++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1 124678999999999999999874
No 81
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.64 E-value=0.00015 Score=74.89 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcC--CCCC----------------C---c-----
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEAD--LERN----------------D---R----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~----------------D---~----- 444 (525)
.+|||+| +..+++.. +.+|+|||+|++|++.|++++.+.. +.-. + .
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 4899999 66677653 6899999999999999999976522 2100 1 1
Q ss_pred -----ccCcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
++..++...+|++++++|+|||+++|..-...
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 22345677899999999999999998654443
No 82
>PRK06922 hypothetical protein; Provisional
Probab=97.64 E-value=0.00012 Score=82.42 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=59.5
Q ss_pred cCCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------
Q 043102 396 FKVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR------ 444 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------ 444 (525)
.++.+||||| +..+++. .+++|+|+|+|++|++.|+++....+.... |.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 3456999999 5566765 478999999999999999998755432110 22
Q ss_pred -c-c-----------CcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -S-F-----------GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -~-v-----------g~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
| + ..++...++++++++|||||++++.+...+
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 1 1 124567899999999999999999865443
No 83
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.64 E-value=6e-05 Score=74.27 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=57.8
Q ss_pred eehhhc-----HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc---------CCCCC----Cc-----------------
Q 043102 400 EVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA---------DLERN----DR----------------- 444 (525)
Q Consensus 400 rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~---------gl~d~----D~----------------- 444 (525)
-||||| +-...+..|..++|||||+.|++.|.++--+. |+..+ |.
T Consensus 53 ~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~ 132 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSL 132 (270)
T ss_pred EEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccc
Confidence 699999 22333345999999999999999999754332 23322 33
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|+.++.+..||..++.+||+|+++++|.--
T Consensus 133 ~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 133 HVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred cChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 667778899999999999999999999753
No 84
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.61 E-value=0.00025 Score=68.85 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc-----------CCCCC--Cc----cc-C-cccH
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA-----------DLERN--DR----SF-G-HEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~-----------gl~d~--D~----~v-g-~~~~ 451 (525)
..+||||| +..+++.. .++|+|+|+|+++++.|+++.... .+.+. |. ++ . ..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 35899999 66777653 478999999999999999886420 00111 33 11 1 2467
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhc
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAA 513 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a 513 (525)
..+++++.++|||||.+++.......-. .......+ .+..+++..++...+.++
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLSLDELKALLKNS 168 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCCHHHHHHHHHHh
Confidence 8999999999999999999765433210 01111111 234566777777776663
No 85
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.61 E-value=6.1e-05 Score=73.83 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccCccc
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFGHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg~~~ 450 (525)
+..+||||| +..+++.. +++|+|+|+++++++.|++++++.|++.- |. .+.. .
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~-~ 154 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA-A 154 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC-C
Confidence 345999999 55566553 47999999999999999999998776421 33 1211 1
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.++..+.+.+.|||||++++..
T Consensus 155 ~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccchHHHHHhhCCCcEEEEEE
Confidence 2344567888999999998853
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.55 E-value=0.00063 Score=70.25 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChH---HHHHHHHHHHHc--------CCCCC------Cc--ccC----
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEK---QLKYAGIKVKEA--------DLERN------DR--SFG---- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~e---ql~~Ar~r~~~~--------gl~d~------D~--~vg---- 447 (525)
+.+||||| +.+++++ |+ .|+|||-|.- |...+++.+... |+++- |. ++|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhc
Confidence 34999999 8888876 76 6999999875 444444444211 22211 44 344
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHh-hcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMK-EYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~-kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
.++--..++++.+.|+|||.+++++..+....-........+.+ +-+| .+||...+..-++++ ||+-+-.++
T Consensus 195 rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~---FiPs~~~L~~wl~r~-gF~~v~~v~ 267 (315)
T PF08003_consen 195 RRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW---FIPSVAALKNWLERA-GFKDVRCVD 267 (315)
T ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE---EeCCHHHHHHHHHHc-CCceEEEec
Confidence 56777889999999999999999998876532111111111110 1122 679999999999996 887655543
No 87
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.53 E-value=0.00028 Score=75.38 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=81.9
Q ss_pred cccchHHHHhccccccchhccccCCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCC--C--
Q 043102 374 YDLSNELFCLFLDESLTYSCALFKVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLER--N-- 442 (525)
Q Consensus 374 YDl~nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d--~-- 442 (525)
-|.+..|+.-.+.+.. .++|||+| ++.++++. +++|+++|+|+.+++.|+++++..+.+. +
T Consensus 213 LD~GtrllL~~lp~~~--------~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 213 LDIGARFFMQHLPENL--------EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred cChHHHHHHHhCCccc--------CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence 4666667665555321 24899999 77888764 6899999999999999999987655321 1
Q ss_pred ---------------Cc-------ccCc----ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccC
Q 043102 443 ---------------DR-------SFGH----EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFP 496 (525)
Q Consensus 443 ---------------D~-------~vg~----~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFP 496 (525)
|. |.+. ....++|+.+.++|||||.+++-.- ++.. -...+++ +|.
T Consensus 285 ~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n-----r~l~---y~~~L~~-~fg 355 (378)
T PRK15001 285 FMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN-----RHLD---YFHKLKK-IFG 355 (378)
T ss_pred EEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe-----cCcC---HHHHHHH-HcC
Confidence 22 3332 2346889999999999999988632 1111 2355666 463
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 497 GGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 497 Gg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.. +.+.+..+|.|.-++
T Consensus 356 ~~---------~~va~~~kf~vl~a~ 372 (378)
T PRK15001 356 NC---------TTIATNNKFVVLKAV 372 (378)
T ss_pred Cc---------eEEccCCCEEEEEEE
Confidence 32 124555688888765
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00019 Score=72.35 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=60.2
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------Cc-------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------------DR------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------D~------- 444 (525)
.+||||| ++.+|+++ .++|+||++++++.+.|++.++..+++++ |.
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY 125 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence 4999999 67788874 49999999999999999999999888877 11
Q ss_pred -----------------ccCcccHHHHHHHHHhccCCCcEEEE
Q 043102 445 -----------------SFGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 445 -----------------~vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|...-+++++++.+.++|||||.+.+
T Consensus 126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 11233688999999999999999976
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.52 E-value=0.00024 Score=72.85 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=57.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cccc--------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSF-------- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~v-------- 446 (525)
.+|||+| ++.++++. +++|+|+|+|+++++.|+++++..|+.++ |..+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~ 202 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDA 202 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCc
Confidence 4899999 77778763 68999999999999999999988776543 1100
Q ss_pred -----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 -----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 -----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 203 ~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 203 EDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred cchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1123577899999999999999874
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=97.51 E-value=0.00077 Score=66.31 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=56.1
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------------Ccc------c---
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------------DRS------F--- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~~------v--- 446 (525)
+.+|||+| ++.+++. ++ +|+|+|+|+++++.|+++++..++... |.. +
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCCC
Confidence 45999999 6677764 65 999999999999999999877654211 220 0
Q ss_pred ------------------CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 ------------------GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 ------------------g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+...+..+++++.++|||||++++-...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 0112567899999999999999975443
No 91
>PRK07208 hypothetical protein; Provisional
Probab=97.50 E-value=0.0052 Score=66.79 Aligned_cols=181 Identities=12% Similarity=0.144 Sum_probs=102.7
Q ss_pred HHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCc--eEeCCEEEEecChHHHHHhhcCCCCHHHHhhc
Q 043102 76 ELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGS--REFYNSCVMALHAPDALKILGNQATFDETRTG 153 (525)
Q Consensus 76 ~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~--~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iL 153 (525)
+-.++.|+++..+..+.++..+.++. ..++.....+|. +..+|+||+|+++..++++|......+.++.+
T Consensus 226 ~~l~~~g~~i~~~~~V~~I~~~~~~~--------v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~ 297 (479)
T PRK07208 226 EKLEALGGKVVLNAKVVGLHHDGDGR--------IAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAA 297 (479)
T ss_pred HHHHHcCCEEEeCCEEEEEEEcCCcE--------EEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHH
Confidence 33344477777777766665532210 001222223453 46699999999999999999743445555666
Q ss_pred cCCc-----eeEeccCCC-CCCCCCCCccccccccCCC--------CCCCC----CCCCCeEEEc----CCCC-------
Q 043102 154 GAFH-----DIFLHCDKN-SMPQNPAAWSAWSFLGSLD--------SKNLG----ETSLPYLVTL----NPDH------- 204 (525)
Q Consensus 154 g~f~-----~~vlHtD~s-~mP~~~~aWaswNy~~~~~--------~~nl~----~~~~~~fvTL----Np~~------- 204 (525)
..++ .+.++-|.. ..|. . |-|....+ ..|+. +.+++.++.+ ....
T Consensus 298 ~~l~~~~~~~v~l~~~~~~~~~~---~---~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~d 371 (479)
T PRK07208 298 AGLRYRDFITVGLLVKELNLFPD---N---WIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSD 371 (479)
T ss_pred hCCCcceeEEEEEEecCCCCCCC---c---eEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCH
Confidence 6665 555666643 2222 1 22221100 00111 1112233211 1000
Q ss_pred -----------------CCcc----eeeEEEecCCCCCHHHHHHHHHhhh-hcCCCCeEEeccCC--CCCCchhhhchHH
Q 043102 205 -----------------APEH----TLLKWSTGPPVPFVAASKASLELGH-IQGRRGIWFRGAYQ--GYGFHEDGLKDLS 260 (525)
Q Consensus 205 -----------------~p~~----il~~~~y~HPv~~~~a~~aq~~l~~-iqG~~~~~fcGay~--g~GfHEdg~~Sgl 260 (525)
+.++ .+.+|.+.=|+|++...+....+.. ++...|+++||.|. .|---|+++.||+
T Consensus 372 eel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~ 451 (479)
T PRK07208 372 EDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAM 451 (479)
T ss_pred HHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHH
Confidence 0111 2446778889999888777666553 45568999999654 3445789999999
Q ss_pred HHHhhhcCCc
Q 043102 261 INSCMTYGEE 270 (525)
Q Consensus 261 ~aA~~llG~~ 270 (525)
++|+.++...
T Consensus 452 ~~a~~i~~~~ 461 (479)
T PRK07208 452 LAVENIIAGE 461 (479)
T ss_pred HHHHHHhcCC
Confidence 9999986553
No 92
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.49 E-value=0.00024 Score=74.88 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=58.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc-------ccC---
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN--------------DR-------SFG--- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~-------~vg--- 447 (525)
++||||| ++.++++. +++|+++|+|+.+++.|++++++.++..+ |. |-|
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~ 277 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT 277 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccc
Confidence 4899999 67777763 57999999999999999999988776433 22 322
Q ss_pred -cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 -HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 -~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.....++++++.+.|||||.++|-.
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 2346799999999999999998854
No 93
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.48 E-value=0.00037 Score=76.00 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--------CC-------CCC--Cc--------cc
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--------DL-------ERN--DR--------SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--------gl-------~d~--D~--------~v 446 (525)
..+||||| +..+++. +.+|+|||+|+++++.++++.... .+ .+. |. |+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 34899999 7788875 789999999999999887643210 11 001 33 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+....+++++.++|||||++++.+.+..
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 444578999999999999999999876543
No 94
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00053 Score=67.58 Aligned_cols=120 Identities=22% Similarity=0.186 Sum_probs=83.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------Cc----ccC--cccHHHHH
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------DR----SFG--HEYMEEFF 455 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------D~----~vg--~~~~~~~f 455 (525)
+|.||| +..++++ .++.|+|||-|++|++.|+++.-.+..+.- |- ++- .++..+.|
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH~~ll 112 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPDHPELL 112 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhccccHHHH
Confidence 899999 6777887 489999999999999999999765544222 22 111 35678999
Q ss_pred HHHHhccCCCcEEEEEEecCCCcchh----cccCchhHHhhccc---CCCCCCCHHHHHHHHHhcCCcEEEE
Q 043102 456 GCCESLIAKDGLFVLQFISIPDERYN----EFRLSSDFMKEYIF---PGGCLPSLSRITSAMSAASRLWYNL 520 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i~~~~~~~~----~~~~~~~fi~kYIF---PGg~LPsl~~i~~~~~~a~gl~V~~ 520 (525)
..+-..|.|||.+.+|.-..-++... +.....+|-+.+-= -..-+||++.+.+.+... +-+|.+
T Consensus 113 ~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~-~~rvDi 183 (257)
T COG4106 113 PRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPL-ACRVDI 183 (257)
T ss_pred HHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcc-cceeee
Confidence 99999999999999996544433321 11223356655311 145789999999988764 555543
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.43 E-value=0.00037 Score=72.39 Aligned_cols=73 Identities=16% Similarity=0.321 Sum_probs=57.5
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc------cc--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR------SF-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~------~v-- 446 (525)
.+|||+| ++.++++. +++|+|+|+|+++++.|+++++..++.++ |. .+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 3899999 67777764 68999999999999999999988776543 11 00
Q ss_pred -----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 -----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 -----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1233578899999999999999984
No 96
>PLN02268 probable polyamine oxidase
Probab=97.41 E-value=0.0044 Score=66.49 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHh-hcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKI-LGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~l-L~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
+|.|++.+|++..+|+||+|+|+..+.++ +.-.| ++.-++.+..+. .++++-|..+.|.
T Consensus 228 ~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 228 GVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred cEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 68898888877899999999999987553 32222 333345555555 8889988877765
No 97
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.38 E-value=0.0003 Score=66.44 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc-------cc
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR-------SF 446 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~-------~v 446 (525)
...+||||| ++.++++. ..+|+++|+|++.++.|++.++..++++- |. +-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 345999999 77888763 34799999999999999999999887621 22 22
Q ss_pred Cc----ccHHHHHHHHHhccCCCcEEEE
Q 043102 447 GH----EYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 g~----~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|. .-..++++.+.+.|||||.+++
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 32 2578999999999999999976
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.35 E-value=0.00025 Score=69.07 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------CcccCcccHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSFGHEYMEEF 454 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~vg~~~~~~~ 454 (525)
..+||||| +..+++. ..+|+++|+|+++++.|++++++.++..- |..+-......+
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 35999999 5556665 56999999999999999999988776421 221101123345
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhccc-CchhHHhhcccCCCCCCCH
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNEFR-LSSDFMKEYIFPGGCLPSL 503 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~~~-~~~~fi~kYIFPGg~LPsl 503 (525)
.+.+.+.|||||++++............+. ....|..+.+|+-.+.|.+
T Consensus 158 ~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 207 (212)
T PRK00312 158 PRALLEQLKEGGILVAPVGGEEQQLLTRVRKRGGRFEREVLEEVRFVPLV 207 (212)
T ss_pred hHHHHHhcCCCcEEEEEEcCCCceEEEEEEEcCCeEEEEEEccEEEEecC
Confidence 677889999999999865411111111121 2334555556665555543
No 99
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.34 E-value=0.00029 Score=71.58 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=52.4
Q ss_pred eehhhc----------HHHHHHhc------CCEEEEEcCChHHHHHHHHHHHH----cCC--------------------
Q 043102 400 EVIFLG----------TIEVVKRT------GCKYTGITLAEKQLKYAGIKVKE----ADL-------------------- 439 (525)
Q Consensus 400 rVLDIG----------a~~lA~~~------G~~VtGIdlS~eql~~Ar~r~~~----~gl-------------------- 439 (525)
+|||+| |+.+++.. +.+|+|+|+|+++++.|++.+-. .++
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~ 181 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKP 181 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEECh
Confidence 999999 45555532 47999999999999999986410 010
Q ss_pred -------------CCC-------Cc--------ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 440 -------------ERN-------DR--------SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 440 -------------~d~-------D~--------~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+. |. ++..+.....+++++++|||||++++.
T Consensus 182 ~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 182 ELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 000 33 334466778999999999999999984
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.34 E-value=0.00044 Score=73.98 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-----------------ccCc-
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR-----------------SFGH- 448 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-----------------~vg~- 448 (525)
+.+|||| ++.+|++ .+..++|||+++.+++.|.+++++.|+..- |+ +...
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 5899999 7777876 478999999999999999999998887542 22 1111
Q ss_pred ----c----cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 ----E----YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ----~----~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
+ -.+.+++++.|+|||||.+.+.+-
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1 126899999999999999999764
No 101
>PRK04457 spermidine synthase; Provisional
Probab=97.34 E-value=0.00044 Score=70.15 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=56.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-----------------cc--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN------DR-----------------SF-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-----------------~v-- 446 (525)
.+||||| +..+++.. +++|++||+++++++.|++.....+..++ |+ ..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~ 147 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDG 147 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCC
Confidence 3899999 55666653 78999999999999999998754332222 22 00
Q ss_pred -Cc---ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 -GH---EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 -g~---~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
+. -...+|++++.++|+|||++++..+..
T Consensus 148 ~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 148 EGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 123799999999999999999976543
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00079 Score=67.80 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=67.3
Q ss_pred ccccCCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc
Q 043102 393 CALFKVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF 446 (525)
Q Consensus 393 ~a~f~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v 446 (525)
+++.+..+|||.| +.++|..- -.+|++.++-++.++.|++++++.|+.++ |+ -+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE
Confidence 3556667999999 56667432 37999999999999999999999999885 22 33
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..++--++++.++++|||||.+++-.-+.
T Consensus 170 Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 170 DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 56777899999999999999999876544
No 103
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.28 E-value=0.00034 Score=67.28 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=60.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc----cc
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR----SF 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~----~v 446 (525)
+|||+| ...|+++ ...+.+|||-|++-++.|+..++..|+++. |+ ++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 999999 6678875 234699999999999999999999888763 22 22
Q ss_pred C------cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 G------HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g------~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
+ ...+..|+..+.++|+|||+|+|.+-..+
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 1 22347899999999999999999776544
No 104
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.27 E-value=0.0005 Score=67.23 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCC---------CCC--Cc--------ccCcccH
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADL---------ERN--DR--------SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl---------~d~--D~--------~vg~~~~ 451 (525)
..+||||| +..+++. .+++|+|||+|+++++.|+++.....+ .+. |. |+..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~~ 123 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDNL 123 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHHH
Confidence 34899999 5566665 378999999999999999987543211 111 33 5666678
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+++++.+++ ++.+++-++..+
T Consensus 124 ~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 124 PTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHhhc--CcEEEEEEeeCC
Confidence 99999999998 567777666443
No 105
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.26 E-value=0.001 Score=72.88 Aligned_cols=53 Identities=6% Similarity=-0.101 Sum_probs=36.6
Q ss_pred EEEecCCCCC--HHHHHHHHHhhhh-cCCCCeEEeccCCCCC---CchhhhchHHHHHhhhc
Q 043102 212 KWSTGPPVPF--VAASKASLELGHI-QGRRGIWFRGAYQGYG---FHEDGLKDLSINSCMTY 267 (525)
Q Consensus 212 ~~~y~HPv~~--~~a~~aq~~l~~i-qG~~~~~fcGay~g~G---fHEdg~~Sgl~aA~~ll 267 (525)
..++.+++|. +.. +..+... ....|+|.||+|+..| --|.+++||..||+.+|
T Consensus 416 v~~~~~a~~~~~pg~---~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 416 VVKLAQSLYREAPGM---DPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EEEecCceeccCCCC---cccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 4566777765 321 1122322 2347999999999775 48999999999999763
No 106
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.21 E-value=0.00048 Score=68.20 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=69.3
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-c------CCC------------CC-----------
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-A------DLE------------RN----------- 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-~------gl~------------d~----------- 442 (525)
.+||..| +..||++ |.+|+|||+|+.-++.|.+.... . +.. |-
T Consensus 39 ~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 3899999 8899986 99999999999999888543221 0 000 00
Q ss_pred ----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcC
Q 043102 443 ----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAAS 514 (525)
Q Consensus 443 ----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~ 514 (525)
|+ ++..+.+++|.+.+.++|||||++++-++..+..... -|- +--+.+++.+.+..
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~-------------GPP-f~v~~~ev~~l~~~-- 181 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME-------------GPP-FSVTEEEVRELFGP-- 181 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS-------------SSS-----HHHHHHHHTT--
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC-------------CcC-CCCCHHHHHHHhcC--
Confidence 22 5667889999999999999999977666644322110 111 11356777777763
Q ss_pred CcEEEEEE
Q 043102 515 RLWYNLAV 522 (525)
Q Consensus 515 gl~V~~~~ 522 (525)
+|+|....
T Consensus 182 ~f~i~~l~ 189 (218)
T PF05724_consen 182 GFEIEELE 189 (218)
T ss_dssp TEEEEEEE
T ss_pred CcEEEEEe
Confidence 68877653
No 107
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.21 E-value=0.0014 Score=70.85 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------Cc-
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-------------------------DR- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------------D~- 444 (525)
+.+|||+| +..+++.. +++|+++|+|+++++.++++++..|+... |+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 34999999 67777754 48999999999999999999998776321 22
Q ss_pred --ccCc----c----------------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 --SFGH----E----------------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 --~vg~----~----------------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. + ...+.++.+.++|||||+++..+.+..
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1121 1 135789999999999999999887774
No 108
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.19 E-value=0.0002 Score=72.55 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=49.1
Q ss_pred Ceehhhc------HHHHHHhc----CCEEEEEcCChHHHHHHHHHHHHcC--------C--CCC--CcccCcccHHHHHH
Q 043102 399 REVIFLG------TIEVVKRT----GCKYTGITLAEKQLKYAGIKVKEAD--------L--ERN--DRSFGHEYMEEFFG 456 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~----G~~VtGIdlS~eql~~Ar~r~~~~g--------l--~d~--D~~vg~~~~~~~f~ 456 (525)
.+||||| +..+++.. ++.|+|+|+|+++++.|+++..... + .+. |..+. -..+..++
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~-~~~~~~~~ 165 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR-IYAPCKAE 165 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE-ecCCCCHH
Confidence 4899999 55666542 3589999999999999988753211 1 111 33111 11134578
Q ss_pred HHHhccCCCcEEEEEE
Q 043102 457 CCESLIAKDGLFVLQF 472 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~ 472 (525)
++.|+|||||++++-.
T Consensus 166 e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 166 ELARVVKPGGIVITVT 181 (272)
T ss_pred HHHhhccCCCEEEEEe
Confidence 9999999999998753
No 109
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.18 E-value=0.0018 Score=62.64 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc-Cccc
Q 043102 397 KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF-GHEY 450 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v-g~~~ 450 (525)
++++++||| ++++|.. ..++|++||-+++.++..++++++.|++.- |+ -+ |-.+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~ 113 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGN 113 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCC
Confidence 345999999 7777732 479999999999999999999999886532 22 22 3478
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+..++.+...|||||+++++.++...
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 999999999999999999999987653
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.17 E-value=0.0012 Score=67.60 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=57.3
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc---------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS--------- 445 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~--------- 445 (525)
.+|||+| ++.+++.. +++|+|+|+|+++++.|+++++..++.++ |..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 3899999 67777753 58999999999999999999988776532 110
Q ss_pred ------------------c----CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 ------------------F----GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 ------------------v----g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
. |...+..+++.+.++|+|||.+++.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 0 1235778899999999999999874
No 111
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.14 E-value=0.0015 Score=68.27 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc-----cC--
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS-----FG-- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~-----vg-- 447 (525)
+.+|||+| +++++. .|++|+|+|+|++|++.|+++++..|+++- |.. .|
T Consensus 183 g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 34899988 556665 599999999999999999999988887541 220 01
Q ss_pred -----c---ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 448 -----H---EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 448 -----~---~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. ..+..+++++.++|||||++++-..
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 2268899999999999999987543
No 112
>PLN02612 phytoene desaturase
Probab=97.14 E-value=0.0092 Score=67.00 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHHhhcCCC-CHHHHhh---cc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALKILGNQA-TFDETRT---GG 154 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~-t~~E~~i---Lg 154 (525)
+.+|++++++..+.+|..+. +|. .+.|++.+|+...+|+||+|++++.+.+||.+.. .....+- |.
T Consensus 319 ~~~G~~I~l~~~V~~I~~~~---------~g~-v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~ 388 (567)
T PLN02612 319 QSLGGEVRLNSRIKKIELND---------DGT-VKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLV 388 (567)
T ss_pred HhcCCEEEeCCeeeEEEECC---------CCc-EEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcC
Confidence 34567777776666665422 111 1335556787788999999999988888886421 1122222 33
Q ss_pred CCc--eeEeccCCCC
Q 043102 155 AFH--DIFLHCDKNS 167 (525)
Q Consensus 155 ~f~--~~vlHtD~s~ 167 (525)
... .+.+.-|..+
T Consensus 389 ~~~v~~v~l~~dr~~ 403 (567)
T PLN02612 389 GVPVINVHIWFDRKL 403 (567)
T ss_pred CCCeEEEEEEECccc
Confidence 322 6777777665
No 113
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.11 E-value=0.00039 Score=71.91 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=60.0
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------Cc----------ccCcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-------DR----------SFGHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-------D~----------~vg~~~~~~~ 454 (525)
.+|||+| ++.+++ .|+ +|+|+|+++.-++.|+++++..|++++ |. .+-..-+...
T Consensus 163 ~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL~~l 241 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVLLEL 241 (295)
T ss_dssp SEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHHHHH
Confidence 3999999 666665 587 899999999999999999999888776 21 1223346678
Q ss_pred HHHHHhccCCCcEEEEEEecC
Q 043102 455 FGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~ 475 (525)
+..+.++|||||++++.-|..
T Consensus 242 ~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 242 APDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHhhCCCCEEEEccccH
Confidence 888999999999999977753
No 114
>PRK00811 spermidine synthase; Provisional
Probab=97.09 E-value=0.0015 Score=67.06 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=54.8
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CC-CCC-------Cc-----------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DL-ERN-------DR----------------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl-~d~-------D~----------------- 444 (525)
.+||+|| +.+++++.+ .+|++||+++++++.|++.+... +. ++. |+
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEEC
Confidence 4999999 566776544 59999999999999999987643 22 121 22
Q ss_pred ---ccCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.. .-.+|++.|.+.|||||++++|.-
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 158 STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 11111 237899999999999999998743
No 115
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.08 E-value=0.0017 Score=64.53 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------C-------c-
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------D-------R- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D-------~- 444 (525)
..++|||| ++..|.. .+.+|+++|+.++-++.+.+..+.+|+.++ | -
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 34999999 5555543 489999999999999999999999999876 1 1
Q ss_pred cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 445 SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 445 ~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
-+ .+.+|-.|+.++.++||+||+++++.+..+.
T Consensus 154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 154 FVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEccchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 11 2567889999999999999999999876665
No 116
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.06 E-value=0.0013 Score=72.73 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=56.8
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc----------
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---------- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---------- 444 (525)
.+||||| ++.++++ .+++|+|+|+|+++++.|+++++..++.++ |.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISH 219 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCc
Confidence 4899999 6667765 478999999999999999999987776543 11
Q ss_pred -----------------cc-----CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 445 -----------------SF-----GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 -----------------~v-----g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
++ |.+.+..+++.+.++|||||.+++.
T Consensus 220 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 220 SEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred hhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 00 2245677889999999999999883
No 117
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.02 E-value=0.0015 Score=65.22 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=57.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------------HcC------------CC----C--
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------------EAD------------LE----R-- 441 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------------~~g------------l~----d-- 441 (525)
.+||+.| ++.||++ |.+|+|||+|+.-++.+.+... ..+ +. .
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 4999999 8899986 9999999999999998866310 001 10 0
Q ss_pred C-----Cc----ccCcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 442 N-----DR----SFGHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 442 ~-----D~----~vg~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
. |+ ++..+.+.+|++.+.++|+|||.+++-+..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1 33 667788999999999999999999887664
No 118
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.001 Score=65.28 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=57.9
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC-----------------CCC--Cccc------Cc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL-----------------ERN--DRSF------GH 448 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl-----------------~d~--D~~v------g~ 448 (525)
.|||+| --+.--..+|+||+||-++.|-++|.+++++..- +|. |..| ..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 689999 2222223589999999999999999999877421 000 3312 36
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
++..+.++++.|+|+|||++++-+-+..+
T Consensus 159 e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 159 EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 78889999999999999999987766543
No 119
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0015 Score=65.42 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=35.9
Q ss_pred cccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHH
Q 043102 394 ALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 394 a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~ 435 (525)
..|....+|||| ++.+|+..|+ .|.|+||++.-++.|++.++
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 344455899999 7889998887 89999999999999999874
No 120
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.99 E-value=0.00042 Score=68.81 Aligned_cols=146 Identities=27% Similarity=0.300 Sum_probs=83.4
Q ss_pred HHhhhcccccchHHHHhccccccchhccccCC-----------Ceehhhc-----HHHHHHhcCCEEEEEcCChHHHHHH
Q 043102 367 CRHISRHYDLSNELFCLFLDESLTYSCALFKV-----------REVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYA 430 (525)
Q Consensus 367 ~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~-----------~rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~A 430 (525)
..-++.-+|.-.+-|...|-+...|+...+-. .++||+| +-...+..-.+.||||||+.|++.|
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA 163 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA 163 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH
Confidence 35556666655555655555555565322100 1999999 1111111235899999999999999
Q ss_pred HHHH-------HHcC--CCCC-----Cc----cc--CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 431 GIKV-------KEAD--LERN-----DR----SF--GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 431 r~r~-------~~~g--l~d~-----D~----~v--g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
.+|- .++- +++. |- .| =...++.+|..+..+|+|||.|.+..-+.++.. .+ ...=-
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f--~l~ps 239 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GF--VLGPS 239 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ce--ecchh
Confidence 9882 1110 1111 22 11 123688999999999999999998765544320 00 00001
Q ss_pred hhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 043102 491 KEYIFPGGCLPSLSRITSAMSAASRLWYNLAVS 523 (525)
Q Consensus 491 ~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~ 523 (525)
++| -.+-+-+.+.++. +||+|+-...
T Consensus 240 ~Ry------AH~~~YVr~~l~~-~Gl~~i~~~~ 265 (287)
T COG4976 240 QRY------AHSESYVRALLAA-SGLEVIAIED 265 (287)
T ss_pred hhh------ccchHHHHHHHHh-cCceEEEeec
Confidence 222 2344445555555 7999886543
No 121
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.97 E-value=0.0016 Score=69.91 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=68.5
Q ss_pred Hhcccccc--chhccccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC----------
Q 043102 382 CLFLDESL--TYSCALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------- 442 (525)
Q Consensus 382 ~l~Ld~~m--~ys~a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------- 442 (525)
.+|||.+. .....+.+..+|||+= ++++|.. || +||+||+|..-+++|+++++-.|++..
T Consensus 200 GfFlDqR~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 200 GFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeeHHhHHHHHHHhhhccCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 34555432 2233444445888875 8888875 99 999999999999999999999998643
Q ss_pred ------------------Cc-cc---------CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 443 ------------------DR-SF---------GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 443 ------------------D~-~v---------g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
|+ .+ ..++|......+.++|+|||.+++-+-.
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 22 11 1467888899999999999999986543
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.95 E-value=0.0021 Score=70.03 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=60.0
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc-cc-
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR-SF- 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~-~v- 446 (525)
+.+|||+| +..+++.. +.+|+++|+|+++++.+++++++.|+..- |+ ..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCTG 330 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCCC
Confidence 34999999 66777643 46999999999999999999998887421 22 11
Q ss_pred -Cc-------------c-------cHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 -GH-------------E-------YMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 -g~-------------~-------~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. + .....++.+.++|||||+++..+.+..
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 10 1 123689999999999999999887764
No 123
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.93 E-value=0.0022 Score=63.29 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=55.6
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------CcccC--------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN----------------DRSFG-------- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~vg-------- 447 (525)
.+|||+| ++.+++.. +++|+|+|+|+++++.|+++++..++..- |..+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPEA 168 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCchh
Confidence 3899999 66777653 67999999999999999999988776411 11000
Q ss_pred ------------------------cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 ------------------------HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ------------------------~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
...+..+++.+.++|||||.+++.
T Consensus 169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 169 DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 112457889999999999999884
No 124
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.91 E-value=0.011 Score=63.89 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=27.4
Q ss_pred cCCCCeEEeccCCC---CCCchhhhchHHHHHhhh
Q 043102 235 QGRRGIWFRGAYQG---YGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 235 qG~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~l 266 (525)
..-.+++|||+|+. .|+-|.++.||..||+.+
T Consensus 418 ~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 418 TPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 34678999999984 468999999999999976
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.90 E-value=0.0028 Score=68.91 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
+.+|||+| +..+|+.. +.+|+++|+|+++++.+++++++.|+..- |+
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 34999999 77777754 57999999999999999999998887421 22
Q ss_pred -ccCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -SFGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -~vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..|. +...+.+..+.++|||||+++..+.+..
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1221 0235668899999999999988777654
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.89 E-value=0.0027 Score=68.78 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc---
Q 043102 398 VREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR--- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~--- 444 (525)
+.+|||+| ++.+++.. +.+|+++|+|+++++.++++++..|+... |+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 45999999 77888764 37999999999999999999988665311 22
Q ss_pred ccCc--------------------ccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 SFGH--------------------EYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ~vg~--------------------~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. .....+++.+.++|||||+++.-+.+.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1110 013478999999999999999877554
No 127
>PRK03612 spermidine synthase; Provisional
Probab=96.89 E-value=0.0046 Score=68.80 Aligned_cols=73 Identities=29% Similarity=0.382 Sum_probs=52.5
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHH--HHH---cCCCCC-------Cc----------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIK--VKE---ADLERN-------DR---------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r--~~~---~gl~d~-------D~---------------- 444 (525)
+||||| +.+++++.+ .+|+.||+++++++.|+++ ..+ ..+++. |+
T Consensus 300 rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~ 379 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIV 379 (521)
T ss_pred eEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEE
Confidence 999999 567776544 6999999999999999983 322 123221 22
Q ss_pred ----cc----CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 ----SF----GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ----~v----g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.. .+-+-++|++.+.+.|||||++++|.
T Consensus 380 D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 380 DLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred eCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 00 11123579999999999999999986
No 128
>PLN02366 spermidine synthase
Probab=96.89 E-value=0.0027 Score=66.05 Aligned_cols=75 Identities=12% Similarity=0.238 Sum_probs=56.4
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~------------------ 444 (525)
.+||+|| +.+++++.+ .+|+.|||++++++.|++..... ++++. |+
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 4999999 667777644 58999999999999999987643 33332 22
Q ss_pred ---ccCcc---cHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGHE---YMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~~---~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.. ..++|++.+.++|+|||++++|.-
T Consensus 173 ~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 173 SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 11111 246899999999999999999864
No 129
>PLN02529 lysine-specific histone demethylase 1
Probab=96.87 E-value=0.023 Score=65.76 Aligned_cols=59 Identities=5% Similarity=-0.072 Sum_probs=39.8
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHHh-hcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALKI-LGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~l-L~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+. +....+|+||+|+|.....+. +.-.| .+.-++.+..+. .++++-|..+.+.
T Consensus 383 dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 383 DGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGE 449 (738)
T ss_pred CeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccC
Confidence 36888764 446789999999999987743 22123 233345566665 8888888776654
No 130
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.003 Score=65.33 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=58.3
Q ss_pred eehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC--C---------------Cc---ccCcccHH
Q 043102 400 EVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER--N---------------DR---SFGHEYME 452 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d--~---------------D~---~vg~~~~~ 452 (525)
+|||+| |+.+++ .|+ +|.|+|+++--++.|+++++..++.. + |. .+-.+=..
T Consensus 165 ~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~ 243 (300)
T COG2264 165 TVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLV 243 (300)
T ss_pred EEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHH
Confidence 999999 666565 698 59999999999999999999888873 2 11 11123355
Q ss_pred HHHHHHHhccCCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.....+.++|||||++++.-|.
T Consensus 244 ~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 244 ELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred HHHHHHHHHcCCCceEEEEeeh
Confidence 7888999999999999997664
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.85 E-value=0.0022 Score=73.74 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC-CC------C------------------c-
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE-RN------D------------------R- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D------------------~- 444 (525)
+.+|||+| ++.+|+. |+ +|++||+|++.++.|+++++..|++ ++ | +
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 34999999 7888875 76 6999999999999999999988886 22 2 1
Q ss_pred ccC-----------cccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 SFG-----------HEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 ~vg-----------~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+. .+++..+++.+.++|+|||.+++.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 111 2356788999999999999998754
No 132
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.84 E-value=0.0012 Score=70.26 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=90.0
Q ss_pred HHHHhhhcccccchHHHHhccccccchhccccCC-----------------------Ceehhhc------HHHHHHhcCC
Q 043102 365 QACRHISRHYDLSNELFCLFLDESLTYSCALFKV-----------------------REVIFLG------TIEVVKRTGC 415 (525)
Q Consensus 365 ~s~~nIa~hYDl~nd~y~l~Ld~~m~ys~a~f~~-----------------------~rVLDIG------a~~lA~~~G~ 415 (525)
.....++..|+...++|..-++..+..+ .+++. .++||+| +.+++...+|
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~-~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~ 134 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFG-RIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKA 134 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhcc-CccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccC
Confidence 5567778888888888876666544321 11211 1788998 7777776689
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc------ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 416 KYTGITLAEKQLKYAGIKVKEADLERN------------------DR------SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 416 ~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~------~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.++|+|+++.|+..+......+++.++ |. -.+..+....+++++|+|||||+++.-
T Consensus 135 ~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 135 GVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999888777655 22 224567889999999999999999998
Q ss_pred EecCCCcchhcccCchhHHhhcc
Q 043102 472 FISIPDERYNEFRLSSDFMKEYI 494 (525)
Q Consensus 472 ~i~~~~~~~~~~~~~~~fi~kYI 494 (525)
.+..... +........++.--|
T Consensus 215 e~i~~~~-~~~~~~~~~~i~~~i 236 (364)
T KOG1269|consen 215 EWIKTAK-LKKPNSEHVDILLEI 236 (364)
T ss_pred HHHHhhh-ccCCCcccccccCce
Confidence 7766532 222223344544334
No 133
>PLN02487 zeta-carotene desaturase
Probab=96.84 E-value=0.0045 Score=69.56 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCCeEEeccCCCCC---CchhhhchHHHHHhhhcCCc
Q 043102 237 RRGIWFRGAYQGYG---FHEDGLKDLSINSCMTYGEE 270 (525)
Q Consensus 237 ~~~~~fcGay~g~G---fHEdg~~Sgl~aA~~llG~~ 270 (525)
-.|+|.||+|+..| --|.+++||..||+.++...
T Consensus 517 ~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 517 ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 37999999998655 48999999999999885443
No 134
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.83 E-value=0.0025 Score=68.50 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=57.5
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC-CC------Cc------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE-RN------DR------------------ 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~-d~------D~------------------ 444 (525)
+..+|||+| ++.++.. |+ +|++||+|+..++.|+++++..|++ ++ |.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 445999999 5655553 55 9999999999999999999988875 22 22
Q ss_pred ----cc--C-------cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ----SF--G-------HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ----~v--g-------~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.. . .+.|..+++.+.++|||||.+++-+-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 00 0 13577788889999999999987553
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.79 E-value=0.0031 Score=66.04 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc---------------ccCc
Q 043102 397 KVREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN-----DR---------------SFGH 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~---------------~vg~ 448 (525)
++.+||||| +..+|+..+ .+|+|||+|+++++.|++++++.|++.- |. ..+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 345999999 667777654 4799999999999999999988776421 22 1122
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
. .....+.+.|||||++++..
T Consensus 160 ~---~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 D---EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred H---HhHHHHHHhcCCCCEEEEEe
Confidence 2 33456778999999998854
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=96.77 E-value=0.0031 Score=66.99 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=51.6
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHH--H---HHcCCCCC-------Cc----------------
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIK--V---KEADLERN-------DR---------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r--~---~~~gl~d~-------D~---------------- 444 (525)
+||+|| +.++.+.. ..+|+.||+++++++.|++. + .+..+.+. |+
T Consensus 153 rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIv 232 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIII 232 (374)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEE
Confidence 999999 45566543 36999999999999999962 1 11223222 22
Q ss_pred c----cC----cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 S----FG----HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ~----vg----~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
. .+ .-+-.+||+.|.+.|+|||++++|.-
T Consensus 233 Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 233 DFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 11 11236799999999999999999853
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.75 E-value=0.0041 Score=67.65 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
..+|||+| ++.+++.. +++|+++|+|+++++.++++++..|+.+- |+
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 34899999 77778764 57999999999999999999988876421 21
Q ss_pred -ccCc-------------c-------cHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 -SFGH-------------E-------YMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg~-------------~-------~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. . ...++++.+.++|||||+++..+.+.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1110 0 12467999999999999999876655
No 138
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.75 E-value=0.0055 Score=62.15 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------------Cc-cc
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN----------------------DR-SF 446 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------------D~-~v 446 (525)
..+|||+| +..+|+.. ...|+++|+|+++++.++++++..|+..- |+ ..
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 45999999 66677653 36999999999999999999998886431 22 11
Q ss_pred Cc----------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 447 GH----------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 447 g~----------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
|. ....+.++.+.++|||||+++..+-+..
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 1234589999999999999988766553
No 139
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.73 E-value=0.0035 Score=62.97 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=53.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Ccc------c--
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRS------F-- 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~------v-- 446 (525)
.+|||+| ++.+++.. .++|+|+|+|+++++.|+++++. +...+ |.. +
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPE 188 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CCCCcEEEEEccccCcCCCCceeEEEECCCcCCc
Confidence 4899999 67777664 58999999999999999999871 11111 110 0
Q ss_pred ------------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 ------------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 ------------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+++.+.++|||||++++.
T Consensus 189 ~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 189 ADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred chhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1234678899999999999999984
No 140
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.68 E-value=0.0056 Score=49.67 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=51.0
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc----cc--C-c
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR----SF--G-H 448 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~----~v--g-~ 448 (525)
+||||| +..+++..+.+++++|+|+++++.+++..+..+.... |. .+ . .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 578998 5566654578999999999999999854332221100 22 11 1 3
Q ss_pred ccHHHHHHHHHhccCCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.....+++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45689999999999999999886
No 141
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.67 E-value=0.03 Score=65.27 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=40.3
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH--h-hcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK--I-LGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~--l-L~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|. .+|+...+|+||++++.....+ + +....+..-++.+..+. .++++-+..+.+.
T Consensus 463 dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 463 DGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG 529 (808)
T ss_pred CeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 367774 5677789999999999998663 1 22222344456677766 8888887776653
No 142
>PTZ00146 fibrillarin; Provisional
Probab=96.61 E-value=0.016 Score=59.85 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHH-cCCC----C------------C-Cc---ccC-
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKE-ADLE----R------------N-DR---SFG- 447 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~-~gl~----d------------~-D~---~vg- 447 (525)
..+|||+| +..+|+..| .+|++||+|+++.+...+.+++ .++. | . |. .+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCC
Confidence 34999999 778887653 5899999998754333333221 1210 0 0 33 122
Q ss_pred cccHHHHHHHHHhccCCCcEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
..+...+..++.+.|||||.++|
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE
Confidence 23344667789999999999999
No 143
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.61 E-value=0.0046 Score=66.84 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=34.0
Q ss_pred Ceehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 399 REVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
.+||||| ++.++++ .+++|+|+|+|+++++.|+++++..+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g 299 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 3899999 6666764 47899999999999999999987655
No 144
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.55 E-value=0.0039 Score=64.25 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=57.0
Q ss_pred ccCCCeehhh----c--HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------
Q 043102 395 LFKVREVIFL----G--TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------------------------- 442 (525)
Q Consensus 395 ~f~~~rVLDI----G--a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------- 442 (525)
+.++.+|||+ | ++.++. -|+ +|++||+|+..++.|+++++..|++..
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred HcCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 3344599994 4 777776 477 899999999999999999998888633
Q ss_pred --Cc-cc--C----cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 --DR-SF--G----HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 --D~-~v--g----~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ .. + .++|.+.++.+.++|+|||.+++-+-
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 22 11 1 35788899999999999999876443
No 145
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.51 E-value=0.0097 Score=57.14 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=68.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHH-H------HcCC---CCC--Cc----c-c-CcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKV-K------EADL---ERN--DR----S-F-GHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-~------~~gl---~d~--D~----~-v-g~~~~~~~ 454 (525)
.+||||| +..+++..++.++|||+|+++++.|+++- + ...+ .+. |. + + ...+...+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~ 94 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEI 94 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHH
Confidence 4899999 55666666889999999999999987641 0 0111 111 44 1 1 13467788
Q ss_pred HHHHHhccCCCcEEEEEEecCCCcchhc-----cc-CchhHHhhc--cc---CCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIPDERYNE-----FR-LSSDFMKEY--IF---PGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~~~~~~~-----~~-~~~~fi~kY--IF---PGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++++.|.+++ .++.. +...+.. +. ...++.+.+ .+ |...+++.+++.+.++++ ||++....
T Consensus 95 l~e~~r~~~~---~ii~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~-Gf~v~~~~ 166 (194)
T TIGR02081 95 LDEMLRVGRH---AIVSF---PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL-NLRILDRA 166 (194)
T ss_pred HHHHHHhCCe---EEEEc---CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC-CCEEEEEE
Confidence 8888887664 33322 1111110 00 001111111 11 234578999999999995 99997644
No 146
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0071 Score=62.10 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=57.5
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------Cc-------------
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLERN---------------DR------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~------------- 444 (525)
+||||| |+.+|++. .++|+|+|+|++-++.|+++++..|+... |-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 699999 77777763 36999999999999999999999886221 11
Q ss_pred --------------cc----CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 445 --------------SF----GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --------------~v----g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ |.+-+..++..+.+.|+|||.+++..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 11 34567888999999999999998853
No 147
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.35 E-value=0.0081 Score=60.59 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=53.1
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC---------------CC------Cc-cc----
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE---------------RN------DR-SF---- 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~---------------d~------D~-~v---- 446 (525)
+|||+| ++.++++. +.+|+|+|+|+++++.|+++++..+.. .+ |+ .+
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~ 168 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDA 168 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchh
Confidence 899999 66777653 679999999999999999998765421 01 11 01
Q ss_pred ----------------------CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 ----------------------GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 ----------------------g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+-+..+++.+.++|||||++++-
T Consensus 169 ~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 169 IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1122567888899999999999874
No 148
>PLN02976 amine oxidase
Probab=96.33 E-value=0.054 Score=66.27 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=38.0
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+.+|.+..+|+||+++|.....+ -+.-+| ...-++.+..+. .++|+-+..+.|.
T Consensus 972 dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~ 1039 (1713)
T PLN02976 972 KKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD 1039 (1713)
T ss_pred CcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC
Confidence 37999999998889999999999774431 112122 112223233332 8888877776665
No 149
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.31 E-value=0.0057 Score=61.13 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=69.6
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCC-------------------CCC--Cc------
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADL-------------------ERN--DR------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl-------------------~d~--D~------ 444 (525)
.+|||.. |++++++ |+ +|..|.-++.-++.|.-+==..+| .|. |+
T Consensus 136 ~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPP 214 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPP 214 (287)
T ss_pred CEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCC
Confidence 4999976 8988886 98 999999999888877654211111 111 33
Q ss_pred ---ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 445 ---SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 445 ---~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
+.|.=+-.+|.++++|+|||||++ +|-+..|.++|. |-. -+..+.+.++++ ||+++
T Consensus 215 RfS~AgeLYseefY~El~RiLkrgGrl-FHYvG~Pg~ryr---------------G~d--~~~gVa~RLr~v-GF~~v 273 (287)
T COG2521 215 RFSLAGELYSEEFYRELYRILKRGGRL-FHYVGNPGKRYR---------------GLD--LPKGVAERLRRV-GFEVV 273 (287)
T ss_pred ccchhhhHhHHHHHHHHHHHcCcCCcE-EEEeCCCCcccc---------------cCC--hhHHHHHHHHhc-Cceee
Confidence 334446679999999999999999 567777766543 112 234667778885 88854
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.28 E-value=0.0069 Score=58.91 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=56.7
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc----------------cc--C--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR----------------SF--G-- 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~----------------~v--g-- 447 (525)
-+|||| .+.+|++ .+..+.|||++..-+..|.+++.+.++..- |+ ++ .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 689999 6667765 689999999999999999999999888543 22 11 0
Q ss_pred ---cc------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HE------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ --+.|++.+.++|||||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 11 24689999999999999998875
No 151
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.26 E-value=0.012 Score=59.93 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=53.4
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC--CCCC--------------------Cc-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD--LERN--------------------DR----- 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~--------------------D~----- 444 (525)
.+||||| +.+++++. ..+|+++|+++++++.|++.+...+ +++. |.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~ 153 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDS 153 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeC
Confidence 3999999 55666654 3689999999999999999875432 1111 22
Q ss_pred --ccCc-cc--HHHHHHHHHhccCCCcEEEEEE
Q 043102 445 --SFGH-EY--MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 445 --~vg~-~~--~~~~f~~i~r~LkpGG~~viq~ 472 (525)
..+. .+ ..+|++.+.++|+|||+++++.
T Consensus 154 ~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 154 TDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 1121 11 5789999999999999999973
No 152
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.22 E-value=0.015 Score=63.21 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc----
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---- 444 (525)
+.+|||+| +..+|+.. .++|+++|+|+++++.++++++..|+..- |.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 34999999 77777753 36999999999999999999988876421 22
Q ss_pred ----ccCc----c---------c-------HHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 ----SFGH----E---------Y-------MEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 ----~vg~----~---------~-------~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..|. + + ..+.++.+.++|||||+++..+.+.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 0110 0 1 3577999999999999998876555
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0081 Score=59.15 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-cc--CcccHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SF--GHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~v--g~~~~~ 452 (525)
.+||||| |.-+|+- ..+|++|+..++..+.|+++++..|+.+- |+ .| +....+
T Consensus 74 ~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred CeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence 4999999 4456664 55999999999999999999999998543 44 22 122222
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccC--chhHHhhcccCCCCCC
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRL--SSDFMKEYIFPGGCLP 501 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~--~~~fi~kYIFPGg~LP 501 (525)
+.+.+.|||||++++=.-..+.+..-.+.+ ...|.++-.|+--..|
T Consensus 153 ---~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vP 200 (209)
T COG2518 153 ---EALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVP 200 (209)
T ss_pred ---HHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeee
Confidence 345688999999998433222222211212 2235555555544444
No 154
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.14 E-value=0.016 Score=56.76 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChH-----------------HHHHHHHHHHHcCCCCCCc-------c
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEK-----------------QLKYAGIKVKEADLERNDR-------S 445 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~e-----------------ql~~Ar~r~~~~gl~d~D~-------~ 445 (525)
+.+||||| +..++++. +++|+|||+|+. .++..++....... |. +
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~---D~V~S~~~~~ 128 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKV---QVVMSDMAPN 128 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCC---CEEecCCCCc
Confidence 34899999 66777764 379999999961 12222222211111 33 1
Q ss_pred -cCcc--c-------HHHHHHHHHhccCCCcEEEEEEe
Q 043102 446 -FGHE--Y-------MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 446 -vg~~--~-------~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.|.. + ....++.+.++|||||.+++..+
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1211 1 24689999999999999999644
No 155
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.12 E-value=0.0053 Score=59.92 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=67.7
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------CCCC------Cc--------ccC-ccc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------LERN------DR--------SFG-HEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d~------D~--------~vg-~~~ 450 (525)
++||+| +..||.+ .-+++++|+|+..++.|++|++... +... |- .+. .+.
T Consensus 46 ~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~ 124 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAED 124 (201)
T ss_dssp EEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHH
T ss_pred eeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHH
Confidence 789999 7788876 4599999999999999999986521 1111 22 223 357
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+..+.+.+...|+|||.+++-..- ....+. .|+.-..+.+...+.+. --+|.-.
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~~r------------d~~c~~----wgh~~ga~tv~~~~~~~-~~~~~~~ 178 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGHAR------------DANCRR----WGHAAGAETVLEMLQEH-LTEVERV 178 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHH----TT-S--HHHHHHHHHHH-SEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEec------------CCcccc----cCcccchHHHHHHHHHH-hhheeEE
Confidence 889999999999999999996541 122222 24555677777777664 3445443
No 156
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.02 Score=58.57 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=62.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------------------
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------------------ 442 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------------ 442 (525)
++||+| ++.++.. ..|+||+||.|+.-+..|.++++..++.++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 799999 4445544 369999999999999999999998887665
Q ss_pred ------Cc--------------c-----cCcccHHHHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 443 ------DR--------------S-----FGHEYMEEFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 443 ------D~--------------~-----vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
|. + -|.+.+-.|+.-+.|+|+|||.+.+..+..++.
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 11 1 134567788999999999999999987765544
No 157
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.023 Score=58.84 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=60.9
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCCC-C--------------Cc-------ccCccc
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLER-N--------------DR-------SFGHEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~d-~--------------D~-------~vg~~~ 450 (525)
+|||+| .+.+|++. ..+||=+|+|..-++.||+.++..+++. . |. |-|+.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~~v 240 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAV 240 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCcch
Confidence 899999 78888875 6899999999999999999999887775 2 22 666655
Q ss_pred HH----HHHHHHHhccCCCcEEEEE
Q 043102 451 ME----EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 451 ~~----~~f~~i~r~LkpGG~~viq 471 (525)
.. ++|+...+.|++||.+.|-
T Consensus 241 ~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 241 VHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred hHHHHHHHHHHHHHhhccCCEEEEE
Confidence 55 8999999999999998774
No 158
>PLN02568 polyamine oxidase
Probab=96.02 E-value=0.11 Score=58.08 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=40.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHH-------hhcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALK-------ILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~-------lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
+|.|.+.+|....+|+||++++.....+ .+....+..-++.+..+. .++++-+..+.++
T Consensus 272 ~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 272 PVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGS 342 (539)
T ss_pred eEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCc
Confidence 7889998998889999999999887664 233212222244445544 7888888776553
No 159
>PHA03411 putative methyltransferase; Provisional
Probab=95.90 E-value=0.039 Score=56.71 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCC----------CCC-Cc--------ccC-----
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADL----------ERN-DR--------SFG----- 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl----------~d~-D~--------~vg----- 447 (525)
.+|||+| ++.++++. +.+|+|+|+|+++++.|+++..+..+ ..+ |. +..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~ 145 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTK 145 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhhh
Confidence 4999999 55566654 68999999999999999987532111 001 22 111
Q ss_pred -----------ccc--HHHHHHHHHhccCCCcEEEEE
Q 043102 448 -----------HEY--MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 -----------~~~--~~~~f~~i~r~LkpGG~~viq 471 (525)
.+. ...+++.+..+|+|+|.+.+-
T Consensus 146 ~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 146 DVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 111 367889999999999977653
No 160
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.81 E-value=0.017 Score=60.84 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-----------------CC------------
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-----------------RN------------ 442 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-----------------d~------------ 442 (525)
..+||||| .....+..=..++|+|+|.+-++.|++|.++..-. |.
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~ 142 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR 142 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence 34999999 55555432369999999999999999999432100 00
Q ss_pred ----Cc-------cc---CcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 ----DR-------SF---GHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 ----D~-------~v---g~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|. |- ..+....+++.|.+.|||||+|+..++
T Consensus 143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 11 21 134567899999999999999998553
No 161
>PLN02676 polyamine oxidase
Probab=95.79 E-value=0.043 Score=60.57 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHH-hhcCCC--CHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALK-ILGNQA--TFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~~~~--t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.||.|.+.+|.+..+|+||+|+|.....+ .+.-+| +...++.+..+. .+++.-|..+.+.
T Consensus 261 ~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 261 NGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPS 328 (487)
T ss_pred CcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence 47999999998899999999998654332 122223 233344555544 8888888877775
No 162
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.77 E-value=0.47 Score=52.03 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=36.0
Q ss_pred HHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH-hhc
Q 043102 79 ESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK-ILG 142 (525)
Q Consensus 79 ~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~-lL~ 142 (525)
++.|+++..+..+.++..+++ +.+.|++.+|++..+|+||+|++..++.. ||.
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~~-----------~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEGG-----------RATAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHCCCEEEECCeEEEEEeeCC-----------EEEEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 344677777766666644221 12456667787788999999999988885 454
No 163
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.69 E-value=0.058 Score=53.08 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=87.9
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------------------------Cc--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN--------------------------DR-- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------------------D~-- 444 (525)
+||||| +.++|++ ...+..--|++++-..-.++.+++.+++.- |+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999 8888887 478999999999998888888888776533 22
Q ss_pred -----cc-CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcc--cCchhHHhhcccCCCCCCCHHHHHHHHHhcCCc
Q 043102 445 -----SF-GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEF--RLSSDFMKEYIFPGGCLPSLSRITSAMSAASRL 516 (525)
Q Consensus 445 -----~v-g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~--~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl 516 (525)
|+ ..+..+.+|+.+.++|++||.+++.--...+..+... ...+.+++.. =|..-+..++++.+..+++ ||
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~~lA~~~-GL 185 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVEALAAAH-GL 185 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHHHHHHHC-CC
Confidence 32 2345678899999999999999997655444433211 2345667654 5888899999998888775 88
Q ss_pred EEEE
Q 043102 517 WYNL 520 (525)
Q Consensus 517 ~V~~ 520 (525)
+..-
T Consensus 186 ~l~~ 189 (204)
T PF06080_consen 186 ELEE 189 (204)
T ss_pred ccCc
Confidence 8643
No 164
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.67 E-value=0.0091 Score=58.82 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc-ccC--c
Q 043102 397 KVREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-SFG--H 448 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-~vg--~ 448 (525)
+..+||||| +.-+|+-- ..+|++|+..++..+.|+++++..++..- |+ +++ .
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBB
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeecc
Confidence 445999999 33344332 34899999999999999999998776432 44 332 3
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..+ ..+.+.||+||++++-.
T Consensus 152 ~~ip---~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 152 PEIP---EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp SS-----HHHHHTEEEEEEEEEEE
T ss_pred chHH---HHHHHhcCCCcEEEEEE
Confidence 3333 44667899999999843
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.65 E-value=0.018 Score=56.99 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=56.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHc-----CCCCC----Cc----cc----CcccHHHHH
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEA-----DLERN----DR----SF----GHEYMEEFF 455 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~-----gl~d~----D~----~v----g~~~~~~~f 455 (525)
+||||| ++.++++ .++++|-.|+ ++.++.|++ .... .+-+. |. +| +.+.-...+
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL 180 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKIL 180 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHH
T ss_pred EEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhccccceeeehhhhhcchHHHHHHH
Confidence 899999 6777776 4899999999 888888888 1110 00000 44 22 345677889
Q ss_pred HHHHhccCCC--cEEEEEEecCCCcc
Q 043102 456 GCCESLIAKD--GLFVLQFISIPDER 479 (525)
Q Consensus 456 ~~i~r~LkpG--G~~viq~i~~~~~~ 479 (525)
+++++.|+|| |+++|.+...++..
T Consensus 181 ~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 181 RNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp HHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred HHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 9999999999 99999998887654
No 166
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.64 E-value=0.015 Score=58.39 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=51.2
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC------CCC------------Cc-----ccCccc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL------ERN------------DR-----SFGHEY 450 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl------~d~------------D~-----~vg~~~ 450 (525)
-++|+| ++-+|+. =-+|+|+|+|++|++.|++.-...-. .+. |- ++.-=+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 679999 5666664 45999999999999999887543211 000 22 222236
Q ss_pred HHHHHHHHHhccCCCc-EEEEEEe
Q 043102 451 MEEFFGCCESLIAKDG-LFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG-~~viq~i 473 (525)
++.|++.++|+||++| .+++-..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 8899999999999866 7776544
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.58 E-value=0.028 Score=56.14 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=58.2
Q ss_pred eehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCC-CCC----Cc------------------ccC--
Q 043102 400 EVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADL-ERN----DR------------------SFG-- 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl-~d~----D~------------------~vg-- 447 (525)
-+|||| .+.+|++ ....+.||++...-+..|.+++.+.++ .-+ |+ ...
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDP 130 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDP 130 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCC
Confidence 789999 6667765 689999999999999999999999999 333 33 111
Q ss_pred ---cc------cHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 ---HE------YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ---~~------~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+ -.+.|++.+.+.|||||.+.+.+
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11 25799999999999999998764
No 168
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.47 E-value=0.08 Score=51.17 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=55.3
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
++.+|||++ +++++.+ |+ +|++||+|++.++.++++++..+++++ |.
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 345899998 7888876 76 899999999999999999988887643 22
Q ss_pred --ccCcccHHHHHHHHH--hccCCCcEEEEEEe
Q 043102 445 --SFGHEYMEEFFGCCE--SLIAKDGLFVLQFI 473 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~--r~LkpGG~~viq~i 473 (525)
-.+...++..++.+. .+|+++|.+++..-
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 112234555565554 36889998888643
No 169
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.40 E-value=0.027 Score=56.55 Aligned_cols=117 Identities=12% Similarity=0.157 Sum_probs=75.1
Q ss_pred eehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcC---------CCCC-----------Cc------
Q 043102 400 EVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEAD---------LERN-----------DR------ 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~g---------l~d~-----------D~------ 444 (525)
+||||| ...+.+. .+.+|.+.|.|+.-++..+++..... +... |.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999 3344432 24899999999999998888754211 1100 33
Q ss_pred --ccCcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH--hhcccCCC---CCCCHHHHHHHHHhcCCcE
Q 043102 445 --SFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM--KEYIFPGG---CLPSLSRITSAMSAASRLW 517 (525)
Q Consensus 445 --~vg~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi--~kYIFPGg---~LPsl~~i~~~~~~a~gl~ 517 (525)
+|+.+.++..++.+.++|||||.+++-+.+..+-...... ...-| +-|+=-.| +.-+.+++...+.++ ||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a-gf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA-GFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc-ccc
Confidence 6788899999999999999999999987665432100000 00011 11222222 335778888889996 665
Q ss_pred E
Q 043102 518 Y 518 (525)
Q Consensus 518 V 518 (525)
.
T Consensus 232 ~ 232 (264)
T KOG2361|consen 232 E 232 (264)
T ss_pred h
Confidence 4
No 170
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.39 E-value=0.02 Score=57.93 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=56.3
Q ss_pred ccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------
Q 043102 395 LFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------- 444 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------- 444 (525)
+-+..+|||.| +..+|+. ...+|.+.++.++.++.|++.++..|+.+. |.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 34455999999 5566654 247999999999999999999999999765 32
Q ss_pred ccCcccHHHHHHHHHhcc-CCCcEEEEEE
Q 043102 445 SFGHEYMEEFFGCCESLI-AKDGLFVLQF 472 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~L-kpGG~~viq~ 472 (525)
.+..++--.++..+.+.| ||||++++-.
T Consensus 118 fLDlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 118 FLDLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred EEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 122344456788888889 8899888754
No 171
>PLN03000 amine oxidase
Probab=95.24 E-value=0.12 Score=60.78 Aligned_cols=65 Identities=6% Similarity=-0.046 Sum_probs=42.4
Q ss_pred ceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHHH---hhcCCCCHHHHhhccCCc-----eeEeccCCCCCCC
Q 043102 101 GCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDALK---ILGNQATFDETRTGGAFH-----DIFLHCDKNSMPQ 170 (525)
Q Consensus 101 ~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL~---lL~~~~t~~E~~iLg~f~-----~~vlHtD~s~mP~ 170 (525)
.++|.. .||.|++.+ +...+|+||+|++.....+ .+.....+.-++.+..+. .++++-|..+.+.
T Consensus 401 ~I~~~~----dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~ 473 (881)
T PLN03000 401 TIRYGS----NGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWST 473 (881)
T ss_pred EEEECC----CeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 345543 378888754 4688999999999886652 222212334456667666 8888877766654
No 172
>PRK00536 speE spermidine synthase; Provisional
Probab=95.23 E-value=0.032 Score=56.89 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=55.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc--CCCCC----------------Cc-ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA--DLERN----------------DR-SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~----------------D~-~vg~~~~~~ 453 (525)
.+||=|| +.++.++ ..+|+=|||+++.++.+++.+... +++|. |. -+....-+.
T Consensus 74 k~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~~~~ 152 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEPDIH 152 (262)
T ss_pred CeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCCChH
Confidence 3999999 7788875 459999999999999999965431 23322 33 222223478
Q ss_pred HHHHHHhccCCCcEEEEEEe
Q 043102 454 FFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i 473 (525)
|++.|++.|+|||.++.|+-
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred HHHHHHHhcCCCcEEEECCC
Confidence 99999999999999999963
No 173
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.01 E-value=0.037 Score=58.57 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=67.0
Q ss_pred HHHHhccccccchhcc----ccCC------------Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHH-
Q 043102 379 ELFCLFLDESLTYSCA----LFKV------------REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKV- 434 (525)
Q Consensus 379 d~y~l~Ld~~m~ys~a----~f~~------------~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~- 434 (525)
+-++++||-..+||.. |-+. .+||-+| +.++.+..+ -+||-||++++|++.|+...
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~v 334 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATV 334 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhH
Confidence 4567888888877642 1111 1899999 667777555 49999999999999999442
Q ss_pred -HH--c-CCCCC-------Cc------------------------ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 435 -KE--A-DLERN-------DR------------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 435 -~~--~-gl~d~-------D~------------------------~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
++ . .++|. |+ .+|+=+-.+|..-..+.|+++|++++|.-
T Consensus 335 lr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 335 LRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 22 1 22332 22 33445567899999999999999999964
No 174
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.89 E-value=0.14 Score=52.12 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=68.6
Q ss_pred cCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------Cc----c-cC-cccH
Q 043102 396 FKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DR----S-FG-HEYM 451 (525)
Q Consensus 396 f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~----~-vg-~~~~ 451 (525)
+...++|||| +..++.. =-+|+..++|..|.. |+++.|..-- |. . +. ...-
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P 167 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP 167 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCH
Confidence 3345899999 6777764 457999999999954 4444443211 22 1 11 2345
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhccc-----CchhHHhhcccCCCCC-CCHHHHHHHHHhcCCcEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFR-----LSSDFMKEYIFPGGCL-PSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~-----~~~~fi~kYIFPGg~L-Psl~~i~~~~~~a~gl~V~~~ 521 (525)
.+.++.+++.|+|+|++++ .++.|-.+|-+.. +..+.+. | +|... -.++.++..++.+ ||+|..-
T Consensus 168 ~~LL~~i~~~l~p~G~lil-AvVlP~~pyVE~~~g~~~~P~e~l~--~-~g~~~E~~v~~l~~v~~p~-GF~v~~~ 238 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLIL-AVVLPFRPYVEFGGGKSNRPSELLP--V-KGATFEEQVSSLVNVFEPA-GFEVERW 238 (265)
T ss_pred HHHHHHHHHHhCCCCEEEE-EEEecccccEEcCCCCCCCchhhcC--C-CCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 6899999999999999988 5555544443221 1122221 1 12100 1233455667774 9998753
No 175
>PLN02823 spermine synthase
Probab=94.48 E-value=0.089 Score=55.55 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=53.8
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc----------------cc
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR----------------SF 446 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~----------------~v 446 (525)
.+||.|| +.++++.. ..+|+.|||+++.++.|++..... ++.+. |+ .+
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~ 184 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL 184 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence 3899999 56666643 358999999999999999987432 22222 22 00
Q ss_pred ------Ccc---cHHHHHH-HHHhccCCCcEEEEEEec
Q 043102 447 ------GHE---YMEEFFG-CCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 ------g~~---~~~~~f~-~i~r~LkpGG~~viq~i~ 474 (525)
+.. +-.+|++ .+.+.|+|||++++|...
T Consensus 185 ~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 185 ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 111 2357888 899999999999998643
No 176
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.32 E-value=0.048 Score=54.05 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=71.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH----------cCCCCC-------Cc--------ccC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE----------ADLERN-------DR--------SFG 447 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~----------~gl~d~-------D~--------~vg 447 (525)
.+.||.| +..+.-..=-+|.-|+.++..++.|++.+.. .||++- |. |+.
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLT 136 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLT 136 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCC
Confidence 3899999 3333322334999999999999999987644 223221 33 666
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
.+++-+||++|...|+|+|.+++-+-...... +.+-..+. ...-|...+.+.+++| ||+|+..
T Consensus 137 D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~Ds---------SvTRs~~~~~~lF~~A-Gl~~v~~ 199 (218)
T PF05891_consen 137 DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDS---------SVTRSDEHFRELFKQA-GLRLVKE 199 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTT---------EEEEEHHHHHHHHHHC-T-EEEEE
T ss_pred HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccC---------eeecCHHHHHHHHHHc-CCEEEEe
Confidence 78899999999999999999999765544321 11111111 1223556777788885 9998864
No 177
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.32 E-value=0.064 Score=50.36 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
+.+||||| +.+++++ +++|+++|+|+.+++.+++++..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc
Confidence 34899999 7788876 89999999999999999998753
No 178
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.28 E-value=0.15 Score=55.51 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
+.+|||+| ++.+|+. +.+|+|+|+|+++++.|+++++..++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD 345 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 35999999 7788875 689999999999999999999877764
No 179
>PLN02672 methionine S-methyltransferase
Probab=94.20 E-value=0.13 Score=61.80 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.9
Q ss_pred CCCeehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 397 KVREVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
+..+||||| ++.++++. .++|+|+|+|++.++.|+++++..+
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~ 166 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNA 166 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 344899999 67777764 4799999999999999999997643
No 180
>PHA03412 putative methyltransferase; Provisional
Probab=93.97 E-value=0.094 Score=52.84 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCeehhhc------HHHHHHh----cCCEEEEEcCChHHHHHHHHHHHHcCC-----C-----CC-Cc------------
Q 043102 398 VREVIFLG------TIEVVKR----TGCKYTGITLAEKQLKYAGIKVKEADL-----E-----RN-DR------------ 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~----~G~~VtGIdlS~eql~~Ar~r~~~~gl-----~-----d~-D~------------ 444 (525)
+.+|||+| ++.++++ ..++|++||+++.+++.|++++....+ . .+ |.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 45999999 5555553 256999999999999999988643211 1 01 22
Q ss_pred ------ccCcccHHHHHHHHHhccCCCcE
Q 043102 445 ------SFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 445 ------~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
|-|..-...+++++.++|++|+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11223356788999997777775
No 181
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=93.83 E-value=0.18 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
.+..++.+.++|||||++++..
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEE
Confidence 3688999999999999999864
No 182
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.62 E-value=0.45 Score=46.48 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=71.4
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------HcCCCCC-----Cccc------CcccHHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------EADLERN-----DRSF------GHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------~~gl~d~-----D~~v------g~~~~~~~ 454 (525)
.||||+| ..+|.++.++++.||+++++.+..+.+|-- +.||.+- |..+ ...+-...
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~v 94 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEV 94 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHH
Confidence 4999999 445555579999999999999988887721 1233221 2211 12334455
Q ss_pred HHHHHhccCCCcEEEEEEecCC----------Ccchh-cccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQFISIP----------DERYN-EFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~~----------~~~~~-~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
++++.|+ |..+++...... ..+.. ...-+..|... |.-++.|+.++....++. |++|.-.+
T Consensus 95 L~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT---PNih~~Ti~DFe~lc~~~-~i~I~~~~ 166 (193)
T PF07021_consen 95 LEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT---PNIHLCTIKDFEDLCREL-GIRIEERV 166 (193)
T ss_pred HHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC---CCcccccHHHHHHHHHHC-CCEEEEEE
Confidence 6666544 666665432221 00000 00113456544 888999999999888885 99987654
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.57 E-value=0.15 Score=53.91 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=52.4
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------Cc-----ccC----------cccHH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------------DR-----SFG----------HEYME 452 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------D~-----~vg----------~~~~~ 452 (525)
++++.- .|++|+|.|++..|+.-|+.+++..++++- |+ -.| .+-+.
T Consensus 212 LiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~ 290 (347)
T COG1041 212 LIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYE 290 (347)
T ss_pred HHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHH
Confidence 566554 599999999999999999999998875543 22 112 12388
Q ss_pred HHHHHHHhccCCCcEEEEEEe
Q 043102 453 EFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i 473 (525)
++|+.+.++||+||++++-.-
T Consensus 291 ~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 291 EALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHhhcCcEEEEecC
Confidence 999999999999999988543
No 184
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=93.57 E-value=0.9 Score=49.85 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=88.6
Q ss_pred cEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCc-----eeEeccCC---CCCCCCC-----------
Q 043102 112 SCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFH-----DIFLHCDK---NSMPQNP----------- 172 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~-----~~vlHtD~---s~mP~~~----------- 172 (525)
++.+.+.+|....||.||++.++.+..++|++ ......++.++ .+++==|. ...|.+.
T Consensus 244 ~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~ 320 (444)
T COG1232 244 GKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYI 320 (444)
T ss_pred ccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcc
Confidence 56777788888899999999999999999985 22233344443 33332222 2223321
Q ss_pred --CCccccccccCCCCCCCCCCCCC-e--EEEcCCCC--------------------------CCcc-eeeEEEecCCCC
Q 043102 173 --AAWSAWSFLGSLDSKNLGETSLP-Y--LVTLNPDH--------------------------APEH-TLLKWSTGPPVP 220 (525)
Q Consensus 173 --~aWaswNy~~~~~~~nl~~~~~~-~--fvTLNp~~--------------------------~p~~-il~~~~y~HPv~ 220 (525)
..|.+ |+...... + ++. + +++..... +|.. -+.||.+.-|+|
T Consensus 321 ~a~~~~S-~~~p~~~p----~-g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY 394 (444)
T COG1232 321 LAITFHS-NKWPHEAP----E-GKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQY 394 (444)
T ss_pred eeEEEec-ccCCCCCC----C-CcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCcc
Confidence 11222 11111100 0 011 1 11122211 1111 345899999999
Q ss_pred CHHHHHHHHHhhh-hcC-CCCeEEeccCCCCCCchhhhchHHHHHhhhc
Q 043102 221 FVAASKASLELGH-IQG-RRGIWFRGAYQGYGFHEDGLKDLSINSCMTY 267 (525)
Q Consensus 221 ~~~a~~aq~~l~~-iqG-~~~~~fcGay~g~GfHEdg~~Sgl~aA~~ll 267 (525)
.+.-.+-.+.+.. |++ -.++...|+|...=--=|++.+|..||++|+
T Consensus 395 ~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 395 EVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred chhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 9998877776664 542 3889999999865456799999999999884
No 185
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.42 E-value=0.43 Score=50.39 Aligned_cols=123 Identities=12% Similarity=0.192 Sum_probs=89.7
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------Cc--------ccCcccHHH
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------DR--------SFGHEYMEE 453 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------D~--------~vg~~~~~~ 453 (525)
...+|+| +..+..++. +|.||+.....+..+..... .|+++. |+ |.+.++.-+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 3789999 455555443 59999999999988888875 555433 44 556788999
Q ss_pred HHHHHHhccCCCcEEEEEEecCCC-cchhc----ccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPD-ERYNE----FRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~-~~~~~----~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~~~~ 524 (525)
+|++|+..|+|||.+++-+...++ ...+. .....+.+..-+-++|-=-+..|....+.++ ||.+....+.
T Consensus 257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~-gF~~~~~~~~ 331 (342)
T KOG3178|consen 257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEE-GFPVCMVALT 331 (342)
T ss_pred HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhh-cCceeEEEec
Confidence 999999999999999998876664 33221 1223455555566788888999999888885 8988776553
No 186
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.27 E-value=0.11 Score=53.89 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=36.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|++ +++|+|||+|+++++.|+++++..|+.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4899999 7888874 899999999999999999999988873
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=93.26 E-value=0.18 Score=51.95 Aligned_cols=72 Identities=26% Similarity=0.479 Sum_probs=54.5
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcC--CCC-C------Cc-------------------
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEAD--LER-N------DR------------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~g--l~d-~------D~------------------- 444 (525)
+||-|| +.++.++.. .++|-|+|.++-++.|++.+.... ..| + |.
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t 158 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST 158 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC
Confidence 999999 666676532 599999999999999999986532 222 2 22
Q ss_pred -ccCcc---cHHHHHHHHHhccCCCcEEEEE
Q 043102 445 -SFGHE---YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 -~vg~~---~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+|.. .-..|++.|++.|+|+|+++.|
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 22321 2379999999999999999999
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=93.02 E-value=0.094 Score=51.44 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=65.0
Q ss_pred hhhcccccchHHHHhccccccchhcccc-CCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 369 HISRHYDLSNELFCLFLDESLTYSCALF-KVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 369 nIa~hYDl~nd~y~l~Ld~~m~ys~a~f-~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+..+.|+..-+|+.-+....+.....+ +++.|||+- ++.+|+. .+++|.++|++++-+++.++.++..+++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 4555677776676665553333333333 345899975 8888873 3789999999999999999999998888
Q ss_pred CC------Cc------------ccC-cccHHHHHHHHHhccCCCcEE
Q 043102 441 RN------DR------------SFG-HEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 441 d~------D~------------~vg-~~~~~~~f~~i~r~LkpGG~~ 468 (525)
++ |+ .++ +..-..|+..+.+++|+||.+
T Consensus 152 ~~i~~~~~D~~~~~~~~~~drvim~lp~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 152 NRIEVINGDAREFLPEGKFDRVIMNLPESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TTEEEEES-GGG---TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEE
T ss_pred CeEEEEcCCHHHhcCccccCEEEECChHHHHHHHHHHHHHhcCCcEE
Confidence 76 44 122 223347888899999999875
No 189
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.82 E-value=0.56 Score=45.90 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc--------------ccCcc---
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----DR--------------SFGHE--- 449 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~--------------~vg~~--- 449 (525)
..+|||+| ++.++.+...+|++||++++.++.|+++++..+++.- |. -+.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 34899998 5544444346999999999999999999988876421 22 11222
Q ss_pred -cHHHHHHHHHh--ccCCCcEEEEEEe
Q 043102 450 -YMEEFFGCCES--LIAKDGLFVLQFI 473 (525)
Q Consensus 450 -~~~~~f~~i~r--~LkpGG~~viq~i 473 (525)
..+..++.+.. +|+|+|.+++..-
T Consensus 134 g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 134 GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 23444555554 3788998888643
No 190
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.65 E-value=0.22 Score=51.30 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=51.6
Q ss_pred eehhhc-------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHH-HcCCCCC------------------Cc-----cc
Q 043102 400 EVIFLG-------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVK-EADLERN------------------DR-----SF 446 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~-~~gl~d~------------------D~-----~v 446 (525)
+|+=|| ++.+++++ ++.|++||++++-.+.|++-++ ..||..+ |. .|
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalV 202 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALV 202 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-
T ss_pred eEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhc
Confidence 999999 88888775 5789999999999999999887 4566554 22 34
Q ss_pred C--cccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 G--HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g--~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
| .+...+.|+.+.+.++||.++++-
T Consensus 203 g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 203 GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 4 457789999999999999999885
No 191
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=92.42 E-value=0.18 Score=52.95 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred Ceehhhc------HHHHH-HhcCCEEEEEcCChHHHHHHHHHHHHc-CCCCC
Q 043102 399 REVIFLG------TIEVV-KRTGCKYTGITLAEKQLKYAGIKVKEA-DLERN 442 (525)
Q Consensus 399 ~rVLDIG------a~~lA-~~~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~ 442 (525)
.+||||| +..++ +.++++++|+|+|++.++.|++.++.. +++++
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 3999999 22333 446899999999999999999999987 67643
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.42 E-value=0.29 Score=54.45 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------------C
Q 043102 398 VREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEADLERN---------------------------D 443 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------------D 443 (525)
.+-+|||| +..+|+. ....+.||+++..-+..|.+++++.++..- |
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD 427 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD 427 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC
Confidence 35899999 6677765 589999999999999999999888877532 1
Q ss_pred c-----ccCcc-cHHHHHHHHHhccCCCcEEEEEE
Q 043102 444 R-----SFGHE-YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 444 ~-----~vg~~-~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+ |--.+ -.+.|++.+.++|||||.+.+.+
T Consensus 428 PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 428 PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 11111 14689999999999999998764
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.22 E-value=0.88 Score=48.93 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=67.2
Q ss_pred Ceehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc-------------ccCc-ccHH
Q 043102 399 REVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----DR-------------SFGH-EYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~-------------~vg~-~~~~ 452 (525)
.+|||++ ++++|.+.++ +|+++|++++-++.++++++..++++. |+ .+.. .--.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~ 138 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSPA 138 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCcH
Confidence 3789988 7888776554 999999999999999999988777543 32 1111 1124
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhc-ccCCCCCCCHHH
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEY-IFPGGCLPSLSR 505 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kY-IFPGg~LPsl~~ 505 (525)
.|++...+.+++||.+++. .+|...-.-.....-+++| .||. ..|...|
T Consensus 139 ~~l~~al~~~~~~gilyvS---AtD~~~L~g~y~~~~~~~yd~fP~-~~~~~~E 188 (382)
T PRK04338 139 PFLDSAIRSVKRGGLLCVT---ATDTAPLCGAYPKSCLRKYGAVPL-KTEFYHE 188 (382)
T ss_pred HHHHHHHHHhcCCCEEEEE---ecCchhhcCCChHHHHHHhcCccc-CCcchhH
Confidence 7788878889999999986 3332211001234456665 6664 3444333
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=92.04 E-value=0.23 Score=50.00 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=53.0
Q ss_pred Ceehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHc--CCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEA--DLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~--gl~d~-------D~------------------ 444 (525)
.+||=|| +.++.+.. -.+||.|+|+++.++.|++..... ++.+. |+
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D 157 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVD 157 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEe
Confidence 4999999 56666543 369999999999999999986542 22222 22
Q ss_pred ---ccCc---ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFGH---EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg~---~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+. -.-.+|++.+.+.|+|||.+++|.-
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 158 LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 1111 1347999999999999999999973
No 195
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=92.02 E-value=0.26 Score=51.98 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=52.3
Q ss_pred ccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------Ccc-------------
Q 043102 395 LFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------DRS------------- 445 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~~------------- 445 (525)
+|++..|||+| ++..|+. |+ +|.+|+.|+ +.+.|++.++..++++. |-.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 56666999999 6677764 75 999999996 45999999999998875 221
Q ss_pred cC-----cccHHHHHHHHHhccCCCcEEE
Q 043102 446 FG-----HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 446 vg-----~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.| ..-+..++-.=.+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 11 1123334444468999999875
No 196
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=92.02 E-value=0.42 Score=51.78 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|+. ..+|+|||+|+++++.|+++++..|+.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA 340 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 4899999 7788875 679999999999999999999887764
No 197
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.00 E-value=0.49 Score=50.31 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred Ceehhhc------HHHHHHh---cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------------------------Cc
Q 043102 399 REVIFLG------TIEVVKR---TGCKYTGITLAEKQLKYAGIKVKEADLERN-------------------------DR 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~---~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------------------D~ 444 (525)
.+|||+. +.++|+. .|..|+++|+|+.-++..+++++..|+..- |+
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDa 237 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDA 237 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECC
Confidence 3999998 5556554 367899999999999999999999998641 33
Q ss_pred ---ccC--------------------cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 ---SFG--------------------HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 ---~vg--------------------~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..| .+-..+.++...++|||||+++-.+-+..
T Consensus 238 PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 238 PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 111 11245778899999999999988766553
No 198
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=91.90 E-value=0.2 Score=51.04 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=46.7
Q ss_pred eehhhc--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-----cCCCCC--Cccc-----CcccHHHHHHHHHhccCCC
Q 043102 400 EVIFLG--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-----ADLERN--DRSF-----GHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 400 rVLDIG--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-----~gl~d~--D~~v-----g~~~~~~~f~~i~r~LkpG 465 (525)
-|-|+| -..+|+..--+|...||-. +.+++.. ..|+|. |.+| --.++..|+.+++|+||+|
T Consensus 183 vIaD~GCGEakiA~~~~~kV~SfDL~a-----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSERHKVHSFDLVA-----VNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPG 257 (325)
T ss_pred EEEecccchhhhhhccccceeeeeeec-----CCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccC
Confidence 677888 3345644456888888754 2333322 333443 4422 1368999999999999999
Q ss_pred cEEEEEEec
Q 043102 466 GLFVLQFIS 474 (525)
Q Consensus 466 G~~viq~i~ 474 (525)
|.+.|-+|.
T Consensus 258 G~l~IAEv~ 266 (325)
T KOG3045|consen 258 GLLYIAEVK 266 (325)
T ss_pred ceEEEEehh
Confidence 999998885
No 199
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.56 E-value=0.29 Score=45.49 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=48.8
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCCC----------------C----c---ccC------------cccHHHHHHHHHh
Q 043102 416 KYTGITLAEKQLKYAGIKVKEADLERN----------------D----R---SFG------------HEYMEEFFGCCES 460 (525)
Q Consensus 416 ~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D----~---~vg------------~~~~~~~f~~i~r 460 (525)
+|.|.||-++-++.+++|+++.++.++ + + .+| .+---..++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 699999999999999999999998765 1 1 111 1223456888999
Q ss_pred ccCCCcEEEEEEecCCCcchhcccCchhHH
Q 043102 461 LIAKDGLFVLQFISIPDERYNEFRLSSDFM 490 (525)
Q Consensus 461 ~LkpGG~~viq~i~~~~~~~~~~~~~~~fi 490 (525)
+|+|||++.+-.-.-.++..++...-..|+
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~ 110 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEESEAVEEFL 110 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHHHHHHHHH
T ss_pred hhccCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999866543333333333334444
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.47 E-value=0.45 Score=52.57 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=58.1
Q ss_pred CCeehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------------Cc--
Q 043102 398 VREVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVKEADLERN-----------------------DR-- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------------D~-- 444 (525)
+.+|||++ +.++|+.. ...|+++|+|+..++..+++++..|+..- |+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 35999999 77777754 35999999999999999999999887531 33
Q ss_pred -ccC--cc------------------cHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 445 -SFG--HE------------------YMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 -~vg--~~------------------~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..| .+ -..+.+..+.++|||||+++--+-++
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 111 01 12567888999999999996655444
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.18 Score=49.90 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=52.1
Q ss_pred eehhhc----------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC--------CCCC-------------------
Q 043102 400 EVIFLG----------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD--------LERN------------------- 442 (525)
Q Consensus 400 rVLDIG----------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g--------l~d~------------------- 442 (525)
+.|||| ++.+. ..|..++||+.=++-+++++++++.-- ++..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg-~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVG-ATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred ceeecCCCccHHHHHHHHHhc-CCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 899999 22223 347777999999999999999986522 1100
Q ss_pred Cc-ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 DR-SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 D~-~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|+ |||. .-++.-+++-..|||||+++|-.+
T Consensus 164 DaIhvGA-aa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 164 DAIHVGA-AASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ceEEEcc-CccccHHHHHHhhccCCeEEEeec
Confidence 55 8884 345667788899999999998544
No 202
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.24 E-value=1.2 Score=42.36 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=51.9
Q ss_pred ccCCCeehhhc------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHHcC--CCCC----------------------C
Q 043102 395 LFKVREVIFLG------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKEAD--LERN----------------------D 443 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~~g--l~d~----------------------D 443 (525)
.+...+|||+| ++.+|+. .+++|+-.|.++ -++..+.+++..+ ...+ |
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 44556999999 6667765 478999999999 8898998887644 2221 1
Q ss_pred c------ccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 444 R------SFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 444 ~------~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
- ....+.++.+++.+.++|+|+|.+++..
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1135678999999999999999966644
No 203
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=91.16 E-value=0.5 Score=45.58 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=57.1
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN------DR------------------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~------------------- 444 (525)
++.+|||+= .++++.+ || +|+-||.|.+-++..+++++..++.++ |.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 344888874 7788886 75 999999999999999999999888764 32
Q ss_pred --ccCccc-HHHHHHHHH--hccCCCcEEEEEEecC
Q 043102 445 --SFGHEY-MEEFFGCCE--SLIAKDGLFVLQFISI 475 (525)
Q Consensus 445 --~vg~~~-~~~~f~~i~--r~LkpGG~~viq~i~~ 475 (525)
-..... ++..++.+. .+|+++|.+++..-..
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 111233 477888887 8999999999976443
No 204
>PRK04148 hypothetical protein; Provisional
Probab=91.13 E-value=0.25 Score=45.55 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=46.6
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------Cc----cc-CcccHHHHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------DR----SF-GHEYMEEFFGC 457 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~----~v-g~~~~~~~f~~ 457 (525)
.+||||| |..|++ .|++|++||+|++-++.|+++.-..-..|- ++ ++ ..+++...+-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred CEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH
Confidence 4899999 666776 599999999999988877766422211221 22 22 34566666666
Q ss_pred HHhccCCCcEEEEEEec
Q 043102 458 CESLIAKDGLFVLQFIS 474 (525)
Q Consensus 458 i~r~LkpGG~~viq~i~ 474 (525)
+.+.+ |.-++|...+
T Consensus 97 la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 97 LAKKI--NVPLIIKPLS 111 (134)
T ss_pred HHHHc--CCCEEEEcCC
Confidence 66655 4455555444
No 205
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=90.09 E-value=0.53 Score=49.62 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR-------- 444 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~-------- 444 (525)
.+.-|||+| +..+|+. |+ +|.+|+-| +|.++|++.++...+.++ |.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchh
Confidence 334899999 5566654 65 99999988 699999999988777776 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+..+-++.|+-. .+.|||.|.++
T Consensus 255 mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred hhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 2234556677644 49999999986
No 206
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.00 E-value=0.37 Score=52.90 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=53.3
Q ss_pred Ceehhhc---------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC------C-----------c------
Q 043102 399 REVIFLG---------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN------D-----------R------ 444 (525)
Q Consensus 399 ~rVLDIG---------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D-----------~------ 444 (525)
..||||| ++.++++.+ .+|++|+-|+......++++++.+++++ | -
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL 267 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL 267 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc
Confidence 3799999 333333323 5999999999888888888888888777 2 2
Q ss_pred -ccC-cccHHHHHHHHHhccCCCcEEE
Q 043102 445 -SFG-HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 445 -~vg-~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+| .+-.++.+....|.|||||.++
T Consensus 268 Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 268 GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 222 4567889999999999999886
No 207
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=89.99 E-value=0.52 Score=48.89 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
++++||||| +..+++. +.+|+++|+|+.+++.++++++..++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 445999999 5667765 789999999999999999998776643
No 208
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=89.74 E-value=0.65 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.7
Q ss_pred cCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 446 FGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 446 vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+..+.....++.+.+.|+|||++++-
T Consensus 236 F~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 236 FDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34566889999999999999998773
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.57 E-value=0.23 Score=49.19 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=54.0
Q ss_pred eehhhc--HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcC-----CCCC--Ccc-----cCcccHHHHHHHHHhccC
Q 043102 400 EVIFLG--TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEAD-----LERN--DRS-----FGHEYMEEFFGCCESLIA 463 (525)
Q Consensus 400 rVLDIG--a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~g-----l~d~--D~~-----vg~~~~~~~f~~i~r~Lk 463 (525)
.|-|+| -..+|+. .+.+|...||-.. .+++-++. |++. |.. +=-.+|..|++++.|+||
T Consensus 75 viaD~GCGdA~la~~~~~~~~V~SfDLva~-----n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVPNKHKVHSFDLVAP-----NPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK 149 (219)
T ss_dssp -EEEES-TT-HHHHH--S---EEEEESS-S-----STTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE
T ss_pred EEEECCCchHHHHHhcccCceEEEeeccCC-----CCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec
Confidence 789999 2223332 3568999998653 12332222 2222 441 113589999999999999
Q ss_pred CCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 464 KDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 464 pGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|||.+.|-++. +++ ....++++.+++- ||.+..-
T Consensus 150 ~~G~L~IAEV~---SRf--------------------~~~~~F~~~~~~~-GF~~~~~ 183 (219)
T PF05148_consen 150 PGGILKIAEVK---SRF--------------------ENVKQFIKALKKL-GFKLKSK 183 (219)
T ss_dssp EEEEEEEEEEG---GG---------------------S-HHHHHHHHHCT-TEEEEEE
T ss_pred cCcEEEEEEec---ccC--------------------cCHHHHHHHHHHC-CCeEEec
Confidence 99999999885 232 1556677777774 8877653
No 210
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=89.32 E-value=0.35 Score=49.26 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
+.+||||| +..++++ +.+|+|+|+|++|++.+++++.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhc
Confidence 35899999 7778876 6799999999999999998774
No 211
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.30 E-value=0.21 Score=43.93 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=63.1
Q ss_pred hc--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhc
Q 043102 404 LG--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 404 IG--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~ 461 (525)
|| ++.+|+..|++|+++|.|++.++.+++.-...-+... |. .+| -+..++....+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---~~~~~~~~~~~ 78 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---SGDTLQEAIKL 78 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---SHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC---cHHHHHHHHHH
Confidence 56 7889988899999999999998888764311111111 11 334 25789999999
Q ss_pred cCCCcEEEEEEecCCCcchhcccCchhHH-hhcccCCCCCCCHHHHHHHHH
Q 043102 462 IAKDGLFVLQFISIPDERYNEFRLSSDFM-KEYIFPGGCLPSLSRITSAMS 511 (525)
Q Consensus 462 LkpGG~~viq~i~~~~~~~~~~~~~~~fi-~kYIFPGg~LPsl~~i~~~~~ 511 (525)
|+|||++++-........ . .....++ +.--+=|....+..++.++++
T Consensus 79 l~~~G~~v~vg~~~~~~~-~--~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPI-S--FNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp EEEEEEEEEESSTSTSEE-E--EEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCC-C--CCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 999999998655541111 0 1122232 222223556666777766654
No 212
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.74 E-value=0.27 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=29.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------cc-C---cccHHHHHHHHHhccCCCcEEE
Q 043102 415 CKYTGITLAEKQLKYAGIKVKEADLERN------DR---------------SF-G---HEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 415 ~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------~v-g---~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.++++||..+. .+.+++.+++.++.++ |. .+ | .+.....++.+.+.|+|||.++
T Consensus 24 ~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 24 GKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ---EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 48999999986 4445555555565544 11 12 1 1345677889999999999999
Q ss_pred EEEe
Q 043102 470 LQFI 473 (525)
Q Consensus 470 iq~i 473 (525)
+|.+
T Consensus 103 ~dD~ 106 (106)
T PF13578_consen 103 FDDY 106 (106)
T ss_dssp EE--
T ss_pred EeCc
Confidence 9864
No 213
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=87.76 E-value=1.2 Score=46.72 Aligned_cols=73 Identities=14% Similarity=0.291 Sum_probs=51.5
Q ss_pred eehhhc---------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------C------c-
Q 043102 400 EVIFLG---------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------D------R- 444 (525)
Q Consensus 400 rVLDIG---------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D------~- 444 (525)
.|+|+| .+.+.++ ..++.++||+|+++++.+.++++...+..- + +
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r 158 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPT 158 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCcc
Confidence 799999 1122222 257999999999999999999983222211 1 1
Q ss_pred -------ccC---cccHHHHHHHHHh-ccCCCcEEEEEE
Q 043102 445 -------SFG---HEYMEEFFGCCES-LIAKDGLFVLQF 472 (525)
Q Consensus 445 -------~vg---~~~~~~~f~~i~r-~LkpGG~~viq~ 472 (525)
.+| ...-..|++.+.+ .|+|||.++|-.
T Consensus 159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 222 4456689999999 999999999843
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=87.69 E-value=2.6 Score=43.79 Aligned_cols=109 Identities=8% Similarity=0.096 Sum_probs=71.8
Q ss_pred eehhhc------HHHHHHhc-C--CEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------c----cC
Q 043102 400 EVIFLG------TIEVVKRT-G--CKYTGITLAEKQLKYAGIKVKEADLERN------DR-------------S----FG 447 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~----vg 447 (525)
|||||. .+.+.+.+ . ..|.=.|.|+.-++..++.+++.||++. |+ + .|
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsG 217 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSG 217 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEec
Confidence 999998 33333332 2 5899999999999999999999999875 33 1 12
Q ss_pred ------c-ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcc------cCCC-CCCCHHHHHHHHHhc
Q 043102 448 ------H-EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYI------FPGG-CLPSLSRITSAMSAA 513 (525)
Q Consensus 448 ------~-~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYI------FPGg-~LPsl~~i~~~~~~a 513 (525)
. +-....++-+.++|.|||.++... ++|. +...+|.+-. -|.. ..-|-.|+-+.++++
T Consensus 218 L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg-----QPwH---PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 218 LYELFPDNDLVRRSLAGLARALEPGGYLIYTG-----QPWH---PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC-----CCCC---cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 1 225567899999999999997643 2221 1122222111 1111 236788999888886
Q ss_pred CCcE
Q 043102 514 SRLW 517 (525)
Q Consensus 514 ~gl~ 517 (525)
||+
T Consensus 290 -GF~ 292 (311)
T PF12147_consen 290 -GFE 292 (311)
T ss_pred -CCc
Confidence 775
No 215
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.15 E-value=0.85 Score=48.28 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------CcccCcccHHHHHHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DRSFGHEYMEEFFGCC 458 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~~vg~~~~~~~f~~i 458 (525)
.++|+=+| |+++|+..|++|+++|.|++-.+.|++.-+...+..+ |..+..-. +.-|...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 34777777 8899987899999999999999999988544333211 22111122 5667778
Q ss_pred HhccCCCcEEEEEEec
Q 043102 459 ESLIAKDGLFVLQFIS 474 (525)
Q Consensus 459 ~r~LkpGG~~viq~i~ 474 (525)
.+.||+||++++--+.
T Consensus 246 l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 246 LKALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHhcCCEEEEECCC
Confidence 8999999999875443
No 216
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=87.09 E-value=0.62 Score=47.04 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.+||||| +..++++ +.+|+|||+++.+++.++++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc
Confidence 445999999 7788876 78999999999999999998754
No 217
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=86.39 E-value=1.9 Score=41.72 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=55.3
Q ss_pred eehhhc------HHHHHH-hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC--------C--------ccc--CcccHHHH
Q 043102 400 EVIFLG------TIEVVK-RTGCKYTGITLAEKQLKYAGIKVKEADLERN--------D--------RSF--GHEYMEEF 454 (525)
Q Consensus 400 rVLDIG------a~~lA~-~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--------D--------~~v--g~~~~~~~ 454 (525)
++|||| .+-+|= ....+|+-+|-+..-.++.++-+++.||++- + ..+ .......+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 799999 333332 2578999999999999999999999999743 2 111 23468899
Q ss_pred HHHHHhccCCCcEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq 471 (525)
++-+..+||+||++++.
T Consensus 131 ~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 131 LELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 99999999999999875
No 218
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=86.36 E-value=0.63 Score=45.48 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.6
Q ss_pred CcccHHHHHHHHHhccCCCcEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
..+.....++.+++.|+|||.+++
T Consensus 150 ~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 150 DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 456678999999999999999988
No 219
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=86.35 E-value=1.4 Score=44.15 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHH-HHHHHH--HcCCCCC----------Cc---ccCcccHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKY-AGIKVK--EADLERN----------DR---SFGHEYMEE 453 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~-Ar~r~~--~~gl~d~----------D~---~vg~~~~~~ 453 (525)
++..||||| +..++++ |+ +|+|||+|++|+.. .++..+ ..+..+- |- .+..--+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 344899999 7778875 65 89999999999887 333221 0111111 11 111112344
Q ss_pred HHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCC-------HHHHHHHHHhcCCcEEEEEEec
Q 043102 454 FFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPS-------LSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPs-------l~~i~~~~~~a~gl~V~~~~~~ 524 (525)
.+..+.++|+| |.+++-. .+.|+..+ .-+ =.+|-+-. +.++...+++ -||++.-.+.|
T Consensus 154 ~l~~i~~~l~~-~~~~~L~----KPqFE~~~---~~~----~~~giv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 218 (228)
T TIGR00478 154 ILPELDLLLNP-NDLTLLF----KPQFEAGR---EKK----NKKGVVRDKEAIALALHKVIDKGES-PDFQEKKIIFS 218 (228)
T ss_pred HHHHHHHHhCc-CeEEEEc----ChHhhhcH---hhc----CcCCeecCHHHHHHHHHHHHHHHHc-CCCeEeeEEEC
Confidence 68999999999 8776543 23344221 111 12444433 3455555555 48887665544
No 220
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=86.30 E-value=1.8 Score=45.95 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=61.4
Q ss_pred eehhh----c--HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCCC------Cc-------------ccCc-ccHH
Q 043102 400 EVIFL----G--TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLERN------DR-------------SFGH-EYME 452 (525)
Q Consensus 400 rVLDI----G--a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d~------D~-------------~vg~-~~~~ 452 (525)
+|||. | ++.+|+. |+. |+++||++.-+++.+++++..++++. |+ -+|. ..-.
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~ 269 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSAH 269 (341)
T ss_pred EEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCcch
Confidence 55653 4 8888985 765 99999999999999999999888775 44 2232 2346
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCc
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDE 478 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~ 478 (525)
.|+....+.||+||.+-.+.++..+.
T Consensus 270 ~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 270 EFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred hhHHHHHHHhhcCcEEEEEeccchhh
Confidence 78999999999999999998876554
No 221
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.04 E-value=0.97 Score=47.07 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=33.4
Q ss_pred eehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc-CCCCC
Q 043102 400 EVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA-DLERN 442 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~-gl~d~ 442 (525)
++|||| .+-.++.+|.+++|.|++++-++.|++.++.- +|+++
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~ 155 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESR 155 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred EeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence 899999 33345668999999999999999999999987 88766
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=85.82 E-value=1.1 Score=40.95 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=35.3
Q ss_pred Ceehhhc------HHHHHH-----hcCCEEEEEcCChHHHHHHHHHHHHcC
Q 043102 399 REVIFLG------TIEVVK-----RTGCKYTGITLAEKQLKYAGIKVKEAD 438 (525)
Q Consensus 399 ~rVLDIG------a~~lA~-----~~G~~VtGIdlS~eql~~Ar~r~~~~g 438 (525)
.+|+|+| +..++. .++.+|+|||.+++.++.|+++.++.+
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3899999 666776 679999999999999999999998876
No 223
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=85.53 E-value=1.1 Score=47.88 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.8
Q ss_pred Ceehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 399 REVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.+|||+| ++.+|.+ +.+|+|||+|++.++.|+++++..+++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD 281 (374)
T ss_pred CEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3899998 6777864 789999999999999999999888774
No 224
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=85.30 E-value=1.3 Score=46.72 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=50.1
Q ss_pred eehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcC-CCC------------C------------Cc---
Q 043102 400 EVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEAD-LER------------N------------DR--- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~g-l~d------------~------------D~--- 444 (525)
.|||+| ++..-+. | ..++||||++.-++.|++|.++.- ..+ . |+
T Consensus 120 ~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fD 198 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFD 198 (389)
T ss_pred ccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcc
Confidence 788877 5554443 4 499999999999999999986521 111 0 22
Q ss_pred --------cc---CcccHHHHHHHHHhccCCCcEEEE
Q 043102 445 --------SF---GHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 445 --------~v---g~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
|. ..+...-+++.+.++|||||.|+-
T Consensus 199 ivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 199 IVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred eeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 22 234566789999999999999975
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.88 E-value=3.3 Score=40.74 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=50.1
Q ss_pred ehhhc------HHHHHHhcCC--EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------ccCccc
Q 043102 401 VIFLG------TIEVVKRTGC--KYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SFGHEY 450 (525)
Q Consensus 401 VLDIG------a~~lA~~~G~--~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~vg~~~ 450 (525)
|.||| .++|+++ |. +|+++|+++.-++.|++.++..|+.++ |. -+|-.-
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 57899 7888886 54 899999999999999999999999887 22 123333
Q ss_pred HHHHHHHHHhccCCCcEEEEEEe
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.++.....++.--.+++|..
T Consensus 80 I~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 80 IIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHhhHHHhccCCeEEEeCC
Confidence 45556655566655556666654
No 226
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=84.62 E-value=0.75 Score=50.79 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=43.7
Q ss_pred eehhhc------HHHHHHhcCCEEEEEc---CChHHHHHHHHHH-HH-cCC--CCC--------Cc-ccC------cccH
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGIT---LAEKQLKYAGIKV-KE-ADL--ERN--------DR-SFG------HEYM 451 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGId---lS~eql~~Ar~r~-~~-~gl--~d~--------D~-~vg------~~~~ 451 (525)
.+|||| +.++.++ +..+..+. -.+.|+++|.+|- .. .++ ..+ |- |.+ ..+-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 689999 5555654 65555543 3345888888772 11 111 111 44 322 1222
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
.-++-++.|+|+|||.+++..
T Consensus 199 g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 199 GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cceeehhhhhhccCceEEecC
Confidence 458899999999999998854
No 227
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=82.70 E-value=2.3 Score=38.04 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.3
Q ss_pred eehhhc------HHHHHHhc-CCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 400 EVIFLG------TIEVVKRT-GCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
.||||| +..+++.. +++|++++.++++++.++++++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 379999 66666652 458999999999999999999877664
No 228
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=82.38 E-value=1.7 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=32.9
Q ss_pred ehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 401 VIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 401 VLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
|||+. ++.+|+. ..+|++||++++.++.|+.+++-.|++++
T Consensus 3 vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~ 49 (163)
T PF09445_consen 3 VLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADN 49 (163)
T ss_dssp EEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGG
T ss_pred EEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 56654 9999985 78999999999999999999999998644
No 229
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=82.20 E-value=1.9 Score=45.84 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=34.6
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
+|||++ ++.+++. ..+|+|||+|+++++.|+++++..|++
T Consensus 200 ~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred cEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 699998 7777775 459999999999999999999888774
No 230
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=81.47 E-value=7.9 Score=37.77 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred ccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------Cc----------------cc
Q 043102 395 LFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------DR----------------SF 446 (525)
Q Consensus 395 ~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~----------------~v 446 (525)
++.+.++||+= .++++.+.-..|+-||.|.+-....+++++..+++.+ |+ -+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 35566899974 7788887445999999999999999999999886655 33 01
Q ss_pred C----cccHHHHHHH----HHhccCCCcEEEEEEe
Q 043102 447 G----HEYMEEFFGC----CESLIAKDGLFVLQFI 473 (525)
Q Consensus 447 g----~~~~~~~f~~----i~r~LkpGG~~viq~i 473 (525)
. ..-++..... -..+|+|+|.+++..-
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 1122222222 3478999999999653
No 231
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=80.95 E-value=15 Score=37.76 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCC--CCCCHHHHHHHHHhcCCcEEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGG--CLPSLSRITSAMSAASRLWYNLAV 522 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg--~LPsl~~i~~~~~~a~gl~V~~~~ 522 (525)
.++.-+|++.|.++|||||.- | ....-.|... + .. .|+. -=+|.+|+...+++ -||++....
T Consensus 178 A~Ni~~Yi~tI~~lLkpgG~W-I---N~GPLlyh~~----~---~~-~~~~~sveLs~eEi~~l~~~-~GF~~~~~~ 241 (270)
T PF07942_consen 178 AENIIEYIETIEHLLKPGGYW-I---NFGPLLYHFE----P---MS-IPNEMSVELSLEEIKELIEK-LGFEIEKEE 241 (270)
T ss_pred hHHHHHHHHHHHHHhccCCEE-E---ecCCccccCC----C---CC-CCCCcccCCCHHHHHHHHHH-CCCEEEEEE
Confidence 357899999999999999943 2 2222222211 0 00 0111 22689999999999 599997654
No 232
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=80.89 E-value=1.9 Score=43.29 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 398 VREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
..+||||| +..++++ +.+|+++|+++++++.++++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhC
Confidence 45999999 6777775 6789999999999999998864
No 233
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=80.79 E-value=3.1 Score=38.58 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred cEEEEeCCCceEeCCEEEEec
Q 043102 112 SCTVVCGDGSREFYNSCVMAL 132 (525)
Q Consensus 112 gv~v~~~~g~~e~fD~VV~A~ 132 (525)
|+.|.+.+|....||+|||||
T Consensus 133 ~~~v~~~~g~~~~~d~VvLa~ 153 (156)
T PF13454_consen 133 GYRVVTADGQSIRADAVVLAT 153 (156)
T ss_pred cEEEEECCCCEEEeCEEEECC
Confidence 578888999889999999997
No 234
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=80.59 E-value=1.3 Score=45.07 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+.|...++.+.++|||||.+++..+... ..|. +...-||.-. .+.+.+.++++++ |+.|.-.
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~-t~Y~--------vG~~~F~~l~-l~ee~v~~al~~a-G~~i~~~ 237 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGS-TYYM--------VGGHKFPCLP-LNEEFVREALEEA-GFDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS--SEEE--------ETTEEEE----B-HHHHHHHHHHT-TEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCc-eeEE--------ECCEeccccc-CCHHHHHHHHHHc-CCEEEec
Confidence 4577779999999999999999776432 2221 1112244322 3567788889985 9988754
No 235
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=79.21 E-value=6 Score=42.55 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=55.2
Q ss_pred eehhhc------HHHHHHhc-C-CEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc--------------ccCc-ccH
Q 043102 400 EVIFLG------TIEVVKRT-G-CKYTGITLAEKQLKYAGIKVKEADLERN-----DR--------------SFGH-EYM 451 (525)
Q Consensus 400 rVLDIG------a~~lA~~~-G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~--------------~vg~-~~~ 451 (525)
+|||+- +++++++. | .+|+++|+|++-++.++++++..+++.. |+ .+.. ..-
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~ 126 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFGTP 126 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCCCc
Confidence 788876 88888763 5 4999999999999999999987776532 22 1211 112
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
..|++.+.+.+++||.+.+..
T Consensus 127 ~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 127 APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred HHHHHHHHHhcccCCEEEEEe
Confidence 479999999999999998853
No 236
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.93 E-value=3.6 Score=40.32 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=34.0
Q ss_pred ccccCCCeehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHH
Q 043102 393 CALFKVREVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 393 ~a~f~~~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
-+-++...|||+| ++-++- .| ++|+|||++++.++.|++++++
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh
Confidence 3445555799999 443333 57 6999999999999999999987
No 237
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=78.83 E-value=4.2 Score=38.87 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=40.3
Q ss_pred EEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------------ccC-----cccHHHHHHHHHhccCC
Q 043102 417 YTGITLAEKQLKYAGIKVKEADLERN------DR---------------------SFG-----HEYMEEFFGCCESLIAK 464 (525)
Q Consensus 417 VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------------~vg-----~~~~~~~f~~i~r~Lkp 464 (525)
+.|.|+++++++.|+++++.+|+.+. |. -++ .+-|..+++++.++|++
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999998654 22 111 23477889999999999
Q ss_pred CcEEEE
Q 043102 465 DGLFVL 470 (525)
Q Consensus 465 GG~~vi 470 (525)
...+++
T Consensus 144 ~~v~l~ 149 (179)
T PF01170_consen 144 RAVFLT 149 (179)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 444433
No 238
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=78.36 E-value=2.9 Score=44.52 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=34.3
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE 440 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~ 440 (525)
+|||++ ++.+++. ..+|+|||+|+++++.|+++++..|++
T Consensus 209 ~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 209 DLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred eEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 689988 6777764 469999999999999999999888774
No 239
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=77.49 E-value=12 Score=41.17 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=50.4
Q ss_pred HHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChHHHH-HhhcCC-CCHHHHhhc
Q 043102 76 ELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAPDAL-KILGNQ-ATFDETRTG 153 (525)
Q Consensus 76 ~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~hadqAL-~lL~~~-~t~~E~~iL 153 (525)
+..++.|+++..+..+.++..+++ +.+.|++.+|.+..+|+||+|+.+-.++ +||... .+...++.+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~~~-----------~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~ 305 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILENG-----------KAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQ 305 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEecCC-----------cEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHH
Confidence 334555777776666555544221 1234555677778899999999988887 477542 123333343
Q ss_pred cCCc------eeEeccCCCCCCC
Q 043102 154 GAFH------DIFLHCDKNSMPQ 170 (525)
Q Consensus 154 g~f~------~~vlHtD~s~mP~ 170 (525)
..++ .+.+.-|....|.
T Consensus 306 ~~~~~s~s~~~~~l~l~~~~~p~ 328 (493)
T TIGR02730 306 RNYVKSPSFLSLHLGVKADVLPP 328 (493)
T ss_pred hhccCCCceEEEEEEecCccCCC
Confidence 4444 5666666666664
No 240
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=75.88 E-value=4.2 Score=41.76 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHhccCCCcEEEEE
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+-..+.+.+++..|+|||.+++-
T Consensus 217 ~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEc
Confidence 455678899999999999999873
No 241
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.39 E-value=7.3 Score=42.08 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcc-hhccc---------------------CchhHHhhcccCCCCCCCHHHH
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDER-YNEFR---------------------LSSDFMKEYIFPGGCLPSLSRI 506 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~-~~~~~---------------------~~~~fi~kYIFPGg~LPsl~~i 506 (525)
+++..|++.=.+-|+|||++++...+.++.. ..... -..+-+..+.+|- |.||++|+
T Consensus 214 ~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~-Y~ps~eEv 292 (386)
T PLN02668 214 ADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPV-YAPSLQDF 292 (386)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcc-cCCCHHHH
Confidence 4799999999999999999999988875321 11000 0122244556665 88999999
Q ss_pred HHHHHhcCCcEEEEE
Q 043102 507 TSAMSAASRLWYNLA 521 (525)
Q Consensus 507 ~~~~~~a~gl~V~~~ 521 (525)
.+.+++.+-|.|+-.
T Consensus 293 ~~~Ie~~gsF~I~~l 307 (386)
T PLN02668 293 KEVVEANGSFAIDKL 307 (386)
T ss_pred HHHHhhcCCEEeeee
Confidence 999999888888654
No 242
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=75.30 E-value=9.6 Score=37.70 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHH-hhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFM-KEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi-~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
+......+++.+++.|||||.+++-+-...... ...+-+ ..| -+...+....+++ ||++...
T Consensus 141 ~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~-----~~~dt~~~~r-------i~~a~V~a~veaa-GFkl~ae 203 (238)
T COG4798 141 HPATAAKVNAAVFKALKPGGVYLVEDHRADPGS-----GLSDTITLHR-------IDPAVVIAEVEAA-GFKLEAE 203 (238)
T ss_pred CcchHHHHHHHHHHhcCCCcEEEEEeccccCCC-----Chhhhhhhcc-------cChHHHHHHHHhh-cceeeee
Confidence 455678999999999999999998754332211 111111 122 2455677777775 8887654
No 243
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.10 E-value=6.3 Score=41.58 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=55.5
Q ss_pred eehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC----C--------------Cc---ccCccc
Q 043102 400 EVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER----N--------------DR---SFGHEY 450 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d----~--------------D~---~vg~~~ 450 (525)
+|+=+| ++.+|+..|+ +|+.+|.|++.++.|++.....-+.. . |. .+|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G--- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG--- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC---
Confidence 788888 6777887784 99999999999999998542211100 0 33 556
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+..++.+.++++|||.+++-.+...+
T Consensus 248 ~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 456899999999999999987766544
No 244
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=74.14 E-value=4.6 Score=40.97 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=48.7
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------CcccCcccHHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DRSFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~vg~~~~~~~f 455 (525)
.+||..| ++++|+..|++|+.++.|+++.+.+++.-...-+..+ |..+..-.....+
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~ 246 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTF 246 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHH
Confidence 3666655 6788888899999999999999888653110000101 1111111124678
Q ss_pred HHHHhccCCCcEEEEEEe
Q 043102 456 GCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq~i 473 (525)
+++.+.|+++|+++.-..
T Consensus 247 ~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 247 EDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred HHHHHHhhcCCEEEEECC
Confidence 899999999999987543
No 245
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=73.07 E-value=17 Score=39.75 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=40.7
Q ss_pred ccceeeeccEEEEEecCCCceeeCccCCcccEEEEeC-CC--ceEeCCEEEEecChHHHHHhhcCC-CCHHHHhhccCCc
Q 043102 82 GVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCG-DG--SREFYNSCVMALHAPDALKILGNQ-ATFDETRTGGAFH 157 (525)
Q Consensus 82 gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~-~g--~~e~fD~VV~A~hadqAL~lL~~~-~t~~E~~iLg~f~ 157 (525)
|+++.++..+.+|..+++ +..||.+.+. +| ++..+|+||+++++..+.+||... ..++-.+.+..++
T Consensus 246 G~~i~~~~~V~~I~~~~~---------~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 316 (492)
T TIGR02733 246 GGNLLTGQRVTAIHTKGG---------RAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLP 316 (492)
T ss_pred CCEEeCCceEEEEEEeCC---------eEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCC
Confidence 666666666666644322 1124544432 11 456799999999999999999741 2233444566666
No 246
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.88 E-value=11 Score=42.08 Aligned_cols=51 Identities=10% Similarity=-0.064 Sum_probs=33.9
Q ss_pred EecCCCCCHHHHHHHHHhhhhcCCCCeEEeccCCC---CCCchhhhchHHHHHhhh
Q 043102 214 STGPPVPFVAASKASLELGHIQGRRGIWFRGAYQG---YGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 214 ~y~HPv~~~~a~~aq~~l~~iqG~~~~~fcGay~g---~GfHEdg~~Sgl~aA~~l 266 (525)
.|....+..+--..+.-...+. +.++|+|-++. -|.-|+|+.||+.+|..+
T Consensus 402 sys~~~~~~~~~~y~~l~~pi~--~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i 455 (501)
T KOG0029|consen 402 SYSYVAVGSDGDDYDRLAEPIK--NRVFFAGEATSRKYPGTMHGAYLSGLRAASDI 455 (501)
T ss_pred cccccCCCCChhHHHHHhcccc--CcEEecchhhcccCCCchHHHHHhhHHHHHHH
Confidence 4555544444333222222343 37999999985 467899999999999987
No 247
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.41 E-value=5.7 Score=42.80 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=42.1
Q ss_pred cccchHHHHhccccccchhccccCCC-------------eehhhc-----HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 374 YDLSNELFCLFLDESLTYSCALFKVR-------------EVIFLG-----TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 374 YDl~nd~y~l~Ld~~m~ys~a~f~~~-------------rVLDIG-----a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
||+.+..|..+.+ ...|+- .|+++ +||-|. ++.++.+.-.+|++||+|+.|....+-|++
T Consensus 1 ~~~~~~~~~~~f~-~lvY~~-~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYAQ-CWEDPRVDMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CchHHHHHHHhcc-ceeecc-ccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 6777777777666 455653 35554 555554 554444435799999999999999998875
Q ss_pred H
Q 043102 436 E 436 (525)
Q Consensus 436 ~ 436 (525)
.
T Consensus 79 a 79 (380)
T PF11899_consen 79 A 79 (380)
T ss_pred H
Confidence 4
No 248
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=71.94 E-value=8.5 Score=42.21 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=52.0
Q ss_pred eehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC---------Cc-------------------
Q 043102 400 EVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN---------DR------------------- 444 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~------------------- 444 (525)
.||||| ++.+++. |+ .||++..=.-|.+.|++...+.|..|+ |.
T Consensus 69 ~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 789998 5555554 55 899999999999999999999999877 11
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~v 469 (525)
.+|..-++.|=....++|+||=+.+
T Consensus 148 ligeGalps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 148 LIGEGALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred hhccccchhHHHHHHHhcccCCeec
Confidence 3344456777777778888875443
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=71.11 E-value=8.2 Score=39.74 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCeehhhc------HHHHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCCCC------------------------Cc-
Q 043102 398 VREVIFLG------TIEVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLERN------------------------DR- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------D~- 444 (525)
+.+|||+. +..+|+..+ ..|++.|+|++-+...++++++.|+... |+
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence 34899998 777777644 7999999999999999999999887543 33
Q ss_pred -----ccC----------c-------ccHHHHHHHHHhcc----CCCcEEEEEEecC
Q 043102 445 -----SFG----------H-------EYMEEFFGCCESLI----AKDGLFVLQFISI 475 (525)
Q Consensus 445 -----~vg----------~-------~~~~~~f~~i~r~L----kpGG~~viq~i~~ 475 (525)
.+. . .-..+.++.+.+.| ||||+++--+-+.
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 111 0 12346688899999 9999998766554
No 250
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=70.75 E-value=4.6 Score=42.03 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=31.2
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChHHHHHHHHHHH
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
+.+||.+ +..+++.. .++|+|+|.++++++.|+++++
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 3788877 88888875 3899999999999999998764
No 251
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.51 E-value=1.9 Score=38.46 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|.+.+..+|++++++|+|||++++.
T Consensus 19 GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 19 GDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4456789999999999999999995
No 252
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.22 E-value=7.8 Score=40.12 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=48.3
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC--CC-----CcccCcccHHHHHHHHHhccCC
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE--RN-----DRSFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~--d~-----D~~vg~~~~~~~f~~i~r~Lkp 464 (525)
++||=+| ++.+|+..|++|+.++.|++..+.|++.-...-+. +. |..+-..-....++...+.|++
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~~l~~ 246 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALEALDR 246 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHHHHHhhCC
Confidence 4666655 67888888999999999999887776642111111 00 3211001113578888999999
Q ss_pred CcEEEEEEe
Q 043102 465 DGLFVLQFI 473 (525)
Q Consensus 465 GG~~viq~i 473 (525)
||++++--.
T Consensus 247 ~G~~v~~G~ 255 (329)
T TIGR02822 247 GGVLAVAGI 255 (329)
T ss_pred CcEEEEEec
Confidence 999987543
No 253
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=70.07 E-value=11 Score=37.56 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=56.7
Q ss_pred Ceehhhc------HHHHH-HhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----Cc--------c-c------CcccHH
Q 043102 399 REVIFLG------TIEVV-KRTGCKYTGITLAEKQLKYAGIKVKEADLERN----DR--------S-F------GHEYME 452 (525)
Q Consensus 399 ~rVLDIG------a~~lA-~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D~--------~-v------g~~~~~ 452 (525)
.+++||| .+-+| -..+.+||=||-...-+.+-++-.++.||++- .+ . . ....+.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L~ 148 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASLN 148 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccchH
Confidence 5999999 45444 33577899999999999999999999999743 11 1 1 234688
Q ss_pred HHHHHHHhccCCCcEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq 471 (525)
.++.-+..+||+||.++..
T Consensus 149 ~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 149 VLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred HHHHHHHHhcccCCcchhh
Confidence 9999999999999988653
No 254
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.84 E-value=7 Score=41.26 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCCCcchhccc----------CchhH----------HhhcccCCCCCCCHHHHHH
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFR----------LSSDF----------MKEYIFPGGCLPSLSRITS 508 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~----------~~~~f----------i~kYIFPGg~LPsl~~i~~ 508 (525)
+++..|++.=.+-|+|||++++...+.++....... ...+. +..+.+|- |.||.+|+..
T Consensus 160 ~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~-Y~ps~eEv~~ 238 (334)
T PF03492_consen 160 KDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPI-YFPSPEEVRA 238 (334)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SB-B---HHHHHH
T ss_pred HHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCc-cCCCHHHHHH
Confidence 478999999999999999999999888763211110 01111 23444554 7899999999
Q ss_pred HHHhcCCcEEEEE
Q 043102 509 AMSAASRLWYNLA 521 (525)
Q Consensus 509 ~~~~a~gl~V~~~ 521 (525)
.+++.+.|+|...
T Consensus 239 ~I~~~gsF~I~~l 251 (334)
T PF03492_consen 239 IIEEEGSFEIEKL 251 (334)
T ss_dssp HHHHHTSEEEEEE
T ss_pred HHhcCCCEEEEEE
Confidence 9999888988643
No 255
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=66.99 E-value=37 Score=27.87 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=49.3
Q ss_pred ehhhc---HH--HHHHhcC--CEEEEEcCChHHHHHHHHHHHHcCCC-----------------C--C-Ccc---cC--c
Q 043102 401 VIFLG---TI--EVVKRTG--CKYTGITLAEKQLKYAGIKVKEADLE-----------------R--N-DRS---FG--H 448 (525)
Q Consensus 401 VLDIG---a~--~lA~~~G--~~VtGIdlS~eql~~Ar~r~~~~gl~-----------------d--~-D~~---vg--~ 448 (525)
+||+| .. .+++... ..++|+|+|+.+++.++......+.. . . |.. .. .
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence 89999 21 3444322 59999999999999977665321110 0 0 111 00 0
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
......+.++.+.|+|+|.+++......
T Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 132 LPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 1147899999999999999999876543
No 256
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.16 E-value=11 Score=39.31 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCeehhhc-------HHHHHHh-c-CCEEEEEcCChHHHHHHHHHHHHcC-CC---CC---Cc---ccCcccHHHHHHHH
Q 043102 398 VREVIFLG-------TIEVVKR-T-GCKYTGITLAEKQLKYAGIKVKEAD-LE---RN---DR---SFGHEYMEEFFGCC 458 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~-~-G~~VtGIdlS~eql~~Ar~r~~~~g-l~---d~---D~---~vg~~~~~~~f~~i 458 (525)
.++||=+| ++.+|++ . +++|+++|.|++.++.|++ +.... .+ +. |. .+|....+..++..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~~~~~ 242 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADETYLIDDIPEDLAVDHAFECVGGRGSQSAINQI 242 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCceeehhhhhhccCCcEEEECCCCCccHHHHHHH
Confidence 34777777 5666765 4 4689999999999998875 21100 00 10 44 45533245678889
Q ss_pred HhccCCCcEEEEEEe
Q 043102 459 ESLIAKDGLFVLQFI 473 (525)
Q Consensus 459 ~r~LkpGG~~viq~i 473 (525)
.++|++||++++-.+
T Consensus 243 ~~~l~~~G~iv~~G~ 257 (341)
T cd08237 243 IDYIRPQGTIGLMGV 257 (341)
T ss_pred HHhCcCCcEEEEEee
Confidence 999999999987544
No 257
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=66.10 E-value=20 Score=36.37 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCCeehhhc-----HHHHHH-hcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----C--------------c-----ccC
Q 043102 397 KVREVIFLG-----TIEVVK-RTGCKYTGITLAEKQLKYAGIKVKEADLERN----D--------------R-----SFG 447 (525)
Q Consensus 397 ~~~rVLDIG-----a~~lA~-~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----D--------------~-----~vg 447 (525)
.+.+||=+| ++.+|- ....+|+-+|+++..+++.++.+++.|+..+ | . --.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 345899999 554443 2467999999999999999999999887643 1 1 112
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCCC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIPD 477 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~~ 477 (525)
.+...-|+.+....||.-|....-.++..+
T Consensus 124 ~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 124 PEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp HHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 456789999999999987744444666554
No 258
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=65.14 E-value=25 Score=34.56 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHhhhcccccchHHHHhcccc---ccchhccccCCCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHH
Q 043102 367 CRHISRHYDLSNELFCLFLDE---SLTYSCALFKVREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 367 ~~nIa~hYDl~nd~y~l~Ld~---~m~ys~a~f~~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
+...++.|+-..|=|.+ ||- ...+....+ ..-+|||| +-.+++. .++....+||+++-++..++-++
T Consensus 12 ~~~f~dVYEPaEDTFlL-lDaLekd~~eL~~~~-~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 12 RLDFSDVYEPAEDTFLL-LDALEKDAAELKGHN-PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred hhhhhhccCccchhhHH-HHHHHHHHHHHhhcC-ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence 34445677766665543 331 111211211 12689999 4455554 35789999999999988877776
Q ss_pred HcCCCCC---------------Cc---------------------------ccCcccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 436 EADLERN---------------DR---------------------------SFGHEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 436 ~~gl~d~---------------D~---------------------------~vg~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.... |. --|++-.++++..+..+|.|.|.|++-.+
T Consensus 90 ~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 90 CNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred hcCCccceeehhHHhhhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 5443211 21 11344467889999999999999999877
Q ss_pred cCCC
Q 043102 474 SIPD 477 (525)
Q Consensus 474 ~~~~ 477 (525)
....
T Consensus 170 ~~N~ 173 (209)
T KOG3191|consen 170 RANK 173 (209)
T ss_pred hhcC
Confidence 5443
No 259
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.25 E-value=11 Score=39.06 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=49.3
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC--------------Cc---ccCcccHH
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN--------------DR---SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~---~vg~~~~~ 452 (525)
.++||=+| ++.+|+..|+ +|+.+|.|++.++.|++.-...-+... |. .+|. +
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~---~ 246 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH---P 246 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---H
Confidence 34777666 7788888898 699999999999988764211000000 22 3443 3
Q ss_pred HHHHHHHhccCCCcEEEEEEe
Q 043102 453 EFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i 473 (525)
..++.+.++|++||++++-..
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 467788899999999987543
No 260
>KOG2730 consensus Methylase [General function prediction only]
Probab=61.86 E-value=7.2 Score=39.20 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
++..|.+ ++.|.+||+++.-++.|+.+++-.|++++
T Consensus 109 tiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~r 144 (263)
T KOG2730|consen 109 TIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDR 144 (263)
T ss_pred HHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCce
Confidence 7777775 99999999999999999999999999876
No 261
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=61.82 E-value=5.5 Score=37.52 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=21.7
Q ss_pred Ceehhhc------HHHHHHhc--CCEEEEEcCChH
Q 043102 399 REVIFLG------TIEVVKRT--GCKYTGITLAEK 425 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~--G~~VtGIdlS~e 425 (525)
.+|||+| +..+.++. .++|+|||+.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3899999 66666653 389999999977
No 262
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.51 E-value=13 Score=38.94 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCeehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC--CC---------------Cc---ccCcc
Q 043102 398 VREVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE--RN---------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~--d~---------------D~---~vg~~ 449 (525)
.++||=.| ++++|+..|++|..++-|++..+++++.-...-+. +. |. .+|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG-- 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG-- 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence 34777777 89999999988888888888777766654322222 11 22 344
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
...|.+..+.|+++|+++.--
T Consensus 221 --~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 221 --GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred --HHHHHHHHHHhccCCEEEEEe
Confidence 466777889999999998643
No 263
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.31 E-value=11 Score=39.50 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=47.3
Q ss_pred Ceehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccH
Q 043102 399 REVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYM 451 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~ 451 (525)
++||=+| ++.+|+..|+ +|+.+|.+++.++.|++.-...-+... |. .+| -
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G---~ 269 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG---S 269 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC---C
Confidence 4666566 7788888899 699999999999988653111001100 22 223 2
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
...++...++|+++|++++-.
T Consensus 270 ~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 270 VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred hHHHHHHHHHHhcCCEEEEEc
Confidence 356778889999999998643
No 264
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=59.68 E-value=7.5 Score=39.38 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=85.1
Q ss_pred cccCchhHHHHhhhcccccchHHHHhcccccc---chhccccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHH
Q 043102 358 SRTNTLTQACRHISRHYDLSNELFCLFLDESL---TYSCALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQL 427 (525)
Q Consensus 358 ~~~N~~~~s~~nIa~hYDl~nd~y~l~Ld~~m---~ys~a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql 427 (525)
+-+|-++..++..+-.-|..|+.+.-=.+.+. -.-|.-+ .+.++||| +..+-.+ |. +++-+|.|-.|+
T Consensus 31 FDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~-fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~ 108 (325)
T KOG2940|consen 31 FDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKS-FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMI 108 (325)
T ss_pred hhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhh-CcceeecccchhhhhHHHHhc-chhheeeeecchHHH
Confidence 33455555555555556666655543222221 1112111 13799999 3344333 44 889999999999
Q ss_pred HHHHHHHH-----------HcCCCCC----Cc---ccC---cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCc
Q 043102 428 KYAGIKVK-----------EADLERN----DR---SFG---HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLS 486 (525)
Q Consensus 428 ~~Ar~r~~-----------~~gl~d~----D~---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~ 486 (525)
+.++.--. +.-|+.. |- .++ ..+++..|.+|...|||+|.|+- ++.-.|..|+- +-+
T Consensus 109 ~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia-smlggdTLyEL-R~s 186 (325)
T KOG2940|consen 109 KSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA-SMLGGDTLYEL-RCS 186 (325)
T ss_pred HHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchh-HHhccccHHHH-HHH
Confidence 98876511 0111111 22 222 35788999999999999999964 66666666652 111
Q ss_pred hhH--HhhcccCCCCCCCHH------HHHHHHHhcCCcEEEE
Q 043102 487 SDF--MKEYIFPGGCLPSLS------RITSAMSAASRLWYNL 520 (525)
Q Consensus 487 ~~f--i~kYIFPGg~LPsl~------~i~~~~~~a~gl~V~~ 520 (525)
... +.+ -||.-|.++ ++-..+.+| ||....
T Consensus 187 lqLAelER---~GGiSphiSPf~qvrDiG~LL~rA-GF~m~t 224 (325)
T KOG2940|consen 187 LQLAELER---EGGISPHISPFTQVRDIGNLLTRA-GFSMLT 224 (325)
T ss_pred hhHHHHHh---ccCCCCCcChhhhhhhhhhHHhhc-Ccccce
Confidence 111 222 255445443 344456775 776543
No 265
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.56 E-value=36 Score=32.90 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=45.6
Q ss_pred eehhhc-------HHHHHHh-cCCEEEEEcCChHHHHHHHHHHHH---cCCCCC-------------------Cc-----
Q 043102 400 EVIFLG-------TIEVVKR-TGCKYTGITLAEKQLKYAGIKVKE---ADLERN-------------------DR----- 444 (525)
Q Consensus 400 rVLDIG-------a~~lA~~-~G~~VtGIdlS~eql~~Ar~r~~~---~gl~d~-------------------D~----- 444 (525)
+|||+| .+.+|.. ....|.-.|=.++-+.-.++.... .++... |-
T Consensus 32 ~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaAD 111 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAAD 111 (201)
T ss_pred HHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEecc
Confidence 788888 3444543 345777777777777666554422 122111 22
Q ss_pred -ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 445 -SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 -~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
.+-.++.....+.|.++|+|-|++++-
T Consensus 112 ClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 112 CLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred chhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 122466788899999999999997764
No 266
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=59.37 E-value=20 Score=37.88 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCC--C-C-------------C--Cc---ccC
Q 043102 397 KVREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADL--E-R-------------N--DR---SFG 447 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl--~-d-------------~--D~---~vg 447 (525)
++.+||.+| ++.+|+..|+ +|+++|.++++.+.+++.....-+ . . + |. .+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 345888877 6788888897 699999999999998876110000 0 0 0 22 222
Q ss_pred c------------------ccHHHHHHHHHhccCCCcEEEEEE
Q 043102 448 H------------------EYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 448 ~------------------~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
- .+-...++++.+.|+++|++++-.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 112457889999999999998764
No 267
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=59.01 E-value=9.8 Score=38.94 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
++++||||| +..|+++ +.+|++|++++..++.-+++..
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc
Confidence 345999999 7788886 8999999999999999999875
No 268
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.74 E-value=11 Score=41.24 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=35.8
Q ss_pred Ceehhh----c--HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 399 REVIFL----G--TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 399 ~rVLDI----G--a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
++|||+ | ++.+|++ ..+|+|++++++.++.|++.++..|+.+
T Consensus 295 ~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N 342 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN 342 (432)
T ss_pred CEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc
Confidence 367775 3 8888974 8999999999999999999999988853
No 269
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=57.98 E-value=16 Score=36.70 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=48.5
Q ss_pred CCeehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCC-------------CC--Cc---ccCcccH
Q 043102 398 VREVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLE-------------RN--DR---SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~-------------d~--D~---~vg~~~~ 451 (525)
.++||=+| ++.+|+..|++ |+.+|.+++.++.|++.-...-+. .+ |. .+|.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~--- 197 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGA--- 197 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC---
Confidence 34666666 67788888986 999999998888776531100000 00 22 3332
Q ss_pred HHHHHHHHhccCCCcEEEEEEec
Q 043102 452 EEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
+..++.+.++|+|+|++++-...
T Consensus 198 ~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 198 TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred hHHHHHHHHHhcCCCEEEEeccC
Confidence 35678888999999999876543
No 270
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=57.52 E-value=19 Score=37.12 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=67.1
Q ss_pred eehhhc--------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCC--C-----CC------------------Cc
Q 043102 400 EVIFLG--------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADL--E-----RN------------------DR 444 (525)
Q Consensus 400 rVLDIG--------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl--~-----d~------------------D~ 444 (525)
..|||| .-++|++ .+++|.=||..+--++.++..+....- . |- |+
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r 150 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDR 150 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence 678888 4556554 589999999999999999998765321 0 00 22
Q ss_pred -----------ccC-cccHHHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHh
Q 043102 445 -----------SFG-HEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSA 512 (525)
Q Consensus 445 -----------~vg-~~~~~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~ 512 (525)
++. .++-...++.+.+.|.||..++|.-.+..... +........+++- -..+.+-|.+|+.+.++
T Consensus 151 PVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-~~~~~~~~~~~~~-~~~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 151 PVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-ERAEALEAVYAQA-GSPGRPRSREEIAAFFD- 227 (267)
T ss_dssp --EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-HHHHHHHHHHHHC-CS----B-HHHHHHCCT-
T ss_pred CeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-HHHHHHHHHHHcC-CCCceecCHHHHHHHcC-
Confidence 232 36788999999999999999999877754321 1111122333332 23346667778776543
Q ss_pred cCCcEE
Q 043102 513 ASRLWY 518 (525)
Q Consensus 513 a~gl~V 518 (525)
||++
T Consensus 228 --g~el 231 (267)
T PF04672_consen 228 --GLEL 231 (267)
T ss_dssp --TSEE
T ss_pred --CCcc
Confidence 5654
No 271
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=56.50 E-value=4.2 Score=40.56 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=59.0
Q ss_pred eehhhcHH--H-HHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC-----Cc--------ccC-cccHHHHHHHHHhc
Q 043102 400 EVIFLGTI--E-VVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN-----DR--------SFG-HEYMEEFFGCCESL 461 (525)
Q Consensus 400 rVLDIGa~--~-lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----D~--------~vg-~~~~~~~f~~i~r~ 461 (525)
++|||||+ + .....+ ..||.|||.+..-.+-++-.-+..+... |. .|+ ...+-+.++.+.+.
T Consensus 54 rlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~f 133 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKF 133 (219)
T ss_pred eEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 99999943 2 222233 4899999998432222222222223211 33 233 56778999999999
Q ss_pred cCCCcE-----EEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 043102 462 IAKDGL-----FVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYNLA 521 (525)
Q Consensus 462 LkpGG~-----~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~~~ 521 (525)
|+|+|. ++| +.|.+- +. +....+...+...|+. -||..+.-
T Consensus 134 L~~~g~~~~~~LFl---VlP~~C----------v~-----NSRy~~~~~l~~im~~-LGf~~~~~ 179 (219)
T PF11968_consen 134 LKPPGLSLFPSLFL---VLPLPC----------VT-----NSRYMTEERLREIMES-LGFTRVKY 179 (219)
T ss_pred hCCCCccCcceEEE---EeCchH----------hh-----cccccCHHHHHHHHHh-CCcEEEEE
Confidence 999999 443 223221 00 1233455666667777 47876643
No 272
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=56.29 E-value=15 Score=42.82 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=54.9
Q ss_pred CCCCCCCCCccccCCCCCCcceeeeeeccCCCcccccccccCccHHHHHHHhccceeeeccEEEEEecCCCceeeCccCC
Q 043102 30 KTDPASYPGRVIPGPQCPGTAWVRTERVFLPPLTIRGYVVTYPNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNG 109 (525)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~~~~~~~~~r~f~~p~~~~~~~~tfPn~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~ 109 (525)
+.+|..|-+.|+-----|+=--+.|-+|+-.|-++.+- .=|=-+||++.||.+.++.-.+++-. +.
T Consensus 24 ~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi---~l~~~dwy~~~~i~L~~~~~v~~idr-----------~~ 89 (793)
T COG1251 24 ESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI---SLNRNDWYEENGITLYTGEKVIQIDR-----------AN 89 (793)
T ss_pred hcCcccceEEEeccCCCccccceeeccccCCCccHHHH---hccchhhHHHcCcEEEcCCeeEEecc-----------Cc
Confidence 35666666655522222222234444555444221111 01234899999999999998888844 32
Q ss_pred cccEEEEeCCCceEeCCEEEEecCh
Q 043102 110 LSSCTVVCGDGSREFYNSCVMALHA 134 (525)
Q Consensus 110 ~~gv~v~~~~g~~e~fD~VV~A~ha 134 (525)
+ .|++++|....||++|+||-+
T Consensus 90 k---~V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 90 K---VVTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred c---eEEccCCcEeecceeEEecCc
Confidence 2 588899989999999999865
No 273
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=56.13 E-value=4.2 Score=39.19 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=41.9
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHH---HHHcCCC---------CC--------------Cc---ccC---------
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIK---VKEADLE---------RN--------------DR---SFG--------- 447 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r---~~~~gl~---------d~--------------D~---~vg--------- 447 (525)
|..+|+. |.+|+|+|++++-++..++- +.+-|++ .+ |. .|+
T Consensus 16 A~~lA~~-G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~ 94 (185)
T PF03721_consen 16 AAALAEK-GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDEDGSP 94 (185)
T ss_dssp HHHHHHT-TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBETTTSB
T ss_pred HHHHHhC-CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccccCCc
Confidence 7777875 99999999999866655432 1111111 11 22 222
Q ss_pred -cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 448 -HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 448 -~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+.....+.+...|++|-.+++.+.+.+
T Consensus 95 Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 95 DLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp ETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred cHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 34578889999999999777777554433
No 274
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=55.75 E-value=19 Score=36.66 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC----C-----------------Cc---ccCcccHHHHHHHHHhc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER----N-----------------DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d----~-----------------D~---~vg~~~~~~~f~~i~r~ 461 (525)
++.+|+..|++|++++-|++..+.+++. |.+. + |. .+|- ..+....++
T Consensus 155 aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~----~~~~~~~~~ 226 (325)
T TIGR02825 155 VGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG----EFSNTVIGQ 226 (325)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH----HHHHHHHHH
Confidence 7788988899999999999988887542 2210 0 11 2332 356888999
Q ss_pred cCCCcEEEEE
Q 043102 462 IAKDGLFVLQ 471 (525)
Q Consensus 462 LkpGG~~viq 471 (525)
|+++|++++-
T Consensus 227 l~~~G~iv~~ 236 (325)
T TIGR02825 227 MKKFGRIAIC 236 (325)
T ss_pred hCcCcEEEEe
Confidence 9999999864
No 275
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.59 E-value=13 Score=35.17 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=35.0
Q ss_pred cCCCeehhhc----HHHHH-HhcC-CEEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 396 FKVREVIFLG----TIEVV-KRTG-CKYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 396 f~~~rVLDIG----a~~lA-~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
+++.+++|+| .+..| ..++ -.|.|+||.++-++++++++++..++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI 98 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh
Confidence 4455899999 44433 3344 489999999999999999999877654
No 276
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=55.19 E-value=23 Score=33.18 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=23.8
Q ss_pred ccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecC
Q 043102 82 GVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALH 133 (525)
Q Consensus 82 gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~h 133 (525)
++++.....+.+|+. . + .++.|++.++.+..+|+||+||=
T Consensus 96 ~l~i~~~~~V~~v~~--------~---~-~~w~v~~~~~~~~~a~~VVlAtG 135 (203)
T PF13738_consen 96 GLEIRFNTRVESVRR--------D---G-DGWTVTTRDGRTIRADRVVLATG 135 (203)
T ss_dssp TGGEETS--EEEEEE--------E---T-TTEEEEETTS-EEEEEEEEE---
T ss_pred CcccccCCEEEEEEE--------e---c-cEEEEEEEecceeeeeeEEEeee
Confidence 566555555555543 2 2 25899999887788999999985
No 277
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=53.97 E-value=17 Score=37.93 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC--CC---------------Cc---ccCcc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE--RN---------------DR---SFGHE 449 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~--d~---------------D~---~vg~~ 449 (525)
.++||=+| ++.+|+..|+ +|+++|.+++.++.|++.-...-+. +. |. .+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~- 255 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR- 255 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC-
Confidence 34777666 7788888898 4999999999999886531100000 00 22 3342
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..++...+.|++||++++-.
T Consensus 256 --~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 256 --PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred --HHHHHHHHHHhccCCEEEEEC
Confidence 345677788999999998643
No 278
>PHA01634 hypothetical protein
Probab=53.95 E-value=17 Score=33.71 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=42.8
Q ss_pred chhccccCCCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCCCcccCcccHH
Q 043102 390 TYSCALFKVREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERNDRSFGHEYME 452 (525)
Q Consensus 390 ~ys~a~f~~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~D~~vg~~~~~ 452 (525)
.|+.--+.+.+||||| |++.+-+ |+ +|.++..++...+..++.++.-.+- |..++...|+
T Consensus 21 ~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~--DK~v~~~eW~ 87 (156)
T PHA01634 21 AYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNIC--DKAVMKGEWN 87 (156)
T ss_pred HhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheee--eceeeccccc
Confidence 3443334455999999 8898875 76 9999999999999999877653221 5555555444
No 279
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=53.78 E-value=16 Score=38.78 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=32.7
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
+|||+= ++.+|+. ..+|+||+++++.++.|++.++..+++.
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN 245 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence 577753 8889975 7899999999999999999999888753
No 280
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=53.33 E-value=23 Score=37.03 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=42.2
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCC-------C-C-------------Cc---ccCcccHHHHHHHHHhc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLE-------R-N-------------DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~-------d-~-------------D~---~vg~~~~~~~f~~i~r~ 461 (525)
++.+|+..|++|++++.|++..+.+++.+ |.+ . . |. .+| ...+..+.++
T Consensus 175 aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG----~~~~~~~~~~ 247 (348)
T PLN03154 175 VGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG----GDMLDAALLN 247 (348)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC----HHHHHHHHHH
Confidence 78889888999999999999888776322 210 0 0 22 334 2467888999
Q ss_pred cCCCcEEEEE
Q 043102 462 IAKDGLFVLQ 471 (525)
Q Consensus 462 LkpGG~~viq 471 (525)
|++||++++-
T Consensus 248 l~~~G~iv~~ 257 (348)
T PLN03154 248 MKIHGRIAVC 257 (348)
T ss_pred hccCCEEEEE
Confidence 9999999863
No 281
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=52.03 E-value=22 Score=36.30 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------CcccCcccHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DRSFGHEYMEE 453 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~~vg~~~~~~ 453 (525)
+.+||-+| ++.+|+..|++|+.++-|+++.+++++.-...-+... |..+..-.-..
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~ 239 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPA 239 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 34666655 7888988899999999999999888653210001100 11111000135
Q ss_pred HHHHHHhccCCCcEEEEE
Q 043102 454 FFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 454 ~f~~i~r~LkpGG~~viq 471 (525)
.+..+.+.|+++|+++.-
T Consensus 240 ~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 240 SMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 678889999999998753
No 282
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=51.07 E-value=41 Score=33.15 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=41.8
Q ss_pred CCeehhhc------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHH-------cCCCCC--------------------C
Q 043102 398 VREVIFLG------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKE-------ADLERN--------------------D 443 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~-------~gl~d~--------------------D 443 (525)
++..+||| .+.+|-..+|+ +.||++.++-.+.|++..++ .|.... |
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 45789999 45556556886 99999999988888765432 333211 2
Q ss_pred c-------ccCcccHHHHHHHHHhccCCCcEEEE
Q 043102 444 R-------SFGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 444 ~-------~vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
+ .+=.+.....+.+....||+|-+++-
T Consensus 123 AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 123 ADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 11123455666778888999988764
No 283
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=50.03 E-value=56 Score=33.43 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=31.3
Q ss_pred cCCCeehhhc-----HHHHHHh-c--CCEEEEEcCChHHHHHHHHHHHHc
Q 043102 396 FKVREVIFLG-----TIEVVKR-T--GCKYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 396 f~~~rVLDIG-----a~~lA~~-~--G~~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
|...+|||+| +..++.. . --+++.||.|++|++.++..++..
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4445999999 4444433 2 348999999999999999987653
No 284
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=49.68 E-value=23 Score=36.25 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=46.0
Q ss_pred Ceehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCC--------------C--Cc---ccCcccH
Q 043102 399 REVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLER--------------N--DR---SFGHEYM 451 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d--------------~--D~---~vg~~~~ 451 (525)
++||=+| ++.+|+..|++ |+.++.++++.+.|++.-...-+.. + |. .+| -
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g---~ 241 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG---N 241 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC---C
Confidence 3565555 67888888998 9999999999888765311000000 0 22 223 2
Q ss_pred HHHHHHHHhccCCCcEEEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..+....+.|+++|++++-.
T Consensus 242 ~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 242 TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred HHHHHHHHHHhhcCCEEEEEc
Confidence 345677789999999998643
No 285
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=49.26 E-value=28 Score=35.13 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=42.0
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC----C----------------Cc---ccCcccHHHHHHHHHhcc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER----N----------------DR---SFGHEYMEEFFGCCESLI 462 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d----~----------------D~---~vg~~~~~~~f~~i~r~L 462 (525)
++.+|+..|++|++++-|++..+.+++. |.+. + |. .+| ...++...+.|
T Consensus 160 aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g----~~~~~~~~~~l 231 (329)
T cd08294 160 VGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG----GEFSSTVLSHM 231 (329)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC----HHHHHHHHHhh
Confidence 7888988899999999999988887652 3211 0 11 223 24678889999
Q ss_pred CCCcEEEEE
Q 043102 463 AKDGLFVLQ 471 (525)
Q Consensus 463 kpGG~~viq 471 (525)
+++|+++.-
T Consensus 232 ~~~G~iv~~ 240 (329)
T cd08294 232 NDFGRVAVC 240 (329)
T ss_pred ccCCEEEEE
Confidence 999999754
No 286
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=49.21 E-value=45 Score=36.10 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=44.3
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCCC------Cc---------------------ccCc-----ccHHHHHHHHHhccC
Q 043102 416 KYTGITLAEKQLKYAGIKVKEADLERN------DR---------------------SFGH-----EYMEEFFGCCESLIA 463 (525)
Q Consensus 416 ~VtGIdlS~eql~~Ar~r~~~~gl~d~------D~---------------------~vg~-----~~~~~~f~~i~r~Lk 463 (525)
.+.|+|+++.+++.|+.+++++|+.|. |. -+|. .-|+.|.+.+.+.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 477999999999999999999999876 22 1121 247778888888888
Q ss_pred CCcEEEEEE
Q 043102 464 KDGLFVLQF 472 (525)
Q Consensus 464 pGG~~viq~ 472 (525)
--+++++-+
T Consensus 336 ~ws~~v~tt 344 (381)
T COG0116 336 GWSRYVFTT 344 (381)
T ss_pred CCceEEEEc
Confidence 888887643
No 287
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=49.09 E-value=26 Score=38.84 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=39.3
Q ss_pred HHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecCh
Q 043102 76 ELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHA 134 (525)
Q Consensus 76 ~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ha 134 (525)
+||++.|+++-..+....+.++. -+|.+.+|+...||++|+||=+
T Consensus 135 e~Yke~gIe~~~~t~v~~~D~~~--------------K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 135 EFYKEKGIELILGTSVVKADLAS--------------KTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhHhhcCceEEEcceeEEeeccc--------------cEEEeCCCceeecceEEEeecC
Confidence 69999999999999999998721 2688899999999999999987
No 288
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=48.73 E-value=26 Score=36.92 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=44.0
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCCC----------------Cc---ccCcccHHHHHHHHHhccCCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-EADLERN----------------DR---SFGHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-~~gl~d~----------------D~---~vg~~~~~~~f~~i~r~LkpG 465 (525)
+..+|+-.||+|+|+-=|+|-.+++++-+- .++++-+ |. .|| ...|+.+...|++.
T Consensus 167 vgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG----g~v~DAv~~~ln~~ 242 (340)
T COG2130 167 VGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG----GEVLDAVLPLLNLF 242 (340)
T ss_pred HHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC----chHHHHHHHhhccc
Confidence 778998889999999999999999887431 1122211 22 445 35677888899999
Q ss_pred cEEEE
Q 043102 466 GLFVL 470 (525)
Q Consensus 466 G~~vi 470 (525)
|++.+
T Consensus 243 aRi~~ 247 (340)
T COG2130 243 ARIPV 247 (340)
T ss_pred cceee
Confidence 98876
No 289
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=48.52 E-value=30 Score=34.87 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=34.1
Q ss_pred cHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEE-EEeCCCceEeCCEEEEecChH
Q 043102 73 NMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCT-VVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 73 n~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~-v~~~~g~~e~fD~VV~A~had 135 (525)
.|.+..+..|+++.....+.++..+.+ +|. |++.+|. ..+|+||+|+-+.
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~------------~v~gv~~~~g~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDGG------------RVTGVRTSDGE-IRADRVVLAAGAW 202 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEETT------------EEEEEEETTEE-EEECEEEE--GGG
T ss_pred hhHHHHHHhhhhccccccccchhhccc------------ccccccccccc-cccceeEeccccc
Confidence 445556667999988877777765322 466 8888886 8899999998653
No 290
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=47.85 E-value=28 Score=41.00 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=37.1
Q ss_pred cHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 73 NMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 73 n~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
+..+||+..|+++.....+.++..+ .-.|.+.+|.+..||+||+||=+.
T Consensus 59 ~~~~~~~~~gv~~~~g~~V~~Id~~--------------~k~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 59 NSKDWYEKHGITLYTGETVIQIDTD--------------QKQVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCHHHHHHCCCEEEcCCeEEEEECC--------------CCEEEECCCcEeeCCEEEECCCCC
Confidence 3468899999999888877777542 124666778788999999999764
No 291
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.56 E-value=20 Score=36.39 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=69.3
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHH----cCCCCC-----------Cc---ccCcccHH
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKE----ADLERN-----------DR---SFGHEYME 452 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~----~gl~d~-----------D~---~vg~~~~~ 452 (525)
+..+|||| +..+.++ |+ +|++||.+..|+.+--+.-.. .+..-+ |- .|..-.+.
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~ 158 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFISLK 158 (245)
T ss_pred CCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhhHH
Confidence 34899999 5555554 76 999999999999875443111 000001 11 22334577
Q ss_pred HHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhccc--CCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 043102 453 EFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIF--PGGCLPSLSRITSAMSAASRLWYNLAVST 524 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIF--PGg~LPsl~~i~~~~~~a~gl~V~~~~~~ 524 (525)
..+..+..+|+|+|-++.-. .+.|+.-+.... ++-|- |......+.++.+.++.. ||.+.=...|
T Consensus 159 ~iLp~l~~l~~~~~~~v~Lv----KPQFEagr~~v~--kkGvv~d~~~~~~v~~~i~~~~~~~-g~~~~gl~~S 225 (245)
T COG1189 159 LILPALLLLLKDGGDLVLLV----KPQFEAGREQVG--KKGVVRDPKLHAEVLSKIENFAKEL-GFQVKGLIKS 225 (245)
T ss_pred HHHHHHHHhcCCCceEEEEe----cchhhhhhhhcC--cCceecCcchHHHHHHHHHHHHhhc-CcEEeeeEcc
Confidence 88999999999999887642 133543322221 12111 223334456666666665 7877654443
No 292
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.02 E-value=41 Score=35.78 Aligned_cols=68 Identities=19% Similarity=0.116 Sum_probs=43.1
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCC----CCC----------Cc-ccCccc-HHHHHHHHHhccCCCcEEE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADL----ERN----------DR-SFGHEY-MEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl----~d~----------D~-~vg~~~-~~~~f~~i~r~LkpGG~~v 469 (525)
++..|+..|.+||+||-|..-.+.|-+++-+..+ ++. |- ..+..+ -+.-|..+.++||++|.++
T Consensus 197 aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 197 AVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred HHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEE
Confidence 8899998999999999997655555544321111 111 11 111111 2345777889999999998
Q ss_pred EEEe
Q 043102 470 LQFI 473 (525)
Q Consensus 470 iq~i 473 (525)
+-.+
T Consensus 277 ~vg~ 280 (360)
T KOG0023|consen 277 LVGL 280 (360)
T ss_pred EEeC
Confidence 7543
No 293
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=47.00 E-value=30 Score=35.41 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC------------------C--Cc---ccCcccHHHHHHHHHhc
Q 043102 406 TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER------------------N--DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 406 a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d------------------~--D~---~vg~~~~~~~f~~i~r~ 461 (525)
++.+|+..|+ +|++++-|++..+.+++.+ |.+. + |. .+|. ..+..+.++
T Consensus 171 aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~----~~~~~~~~~ 243 (345)
T cd08293 171 AGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG----EISDTVISQ 243 (345)
T ss_pred HHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc----HHHHHHHHH
Confidence 7788888899 8999999999888876632 2110 0 22 2332 235788899
Q ss_pred cCCCcEEEEE
Q 043102 462 IAKDGLFVLQ 471 (525)
Q Consensus 462 LkpGG~~viq 471 (525)
|+++|+++.-
T Consensus 244 l~~~G~iv~~ 253 (345)
T cd08293 244 MNENSHIILC 253 (345)
T ss_pred hccCCEEEEE
Confidence 9999999863
No 294
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=46.83 E-value=30 Score=35.41 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=45.3
Q ss_pred eehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCC---CC--Cc---ccCcccHHHHHHHHHhccC
Q 043102 400 EVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLE---RN--DR---SFGHEYMEEFFGCCESLIA 463 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~---d~--D~---~vg~~~~~~~f~~i~r~Lk 463 (525)
+||=+| ++.+|+..|++ |..+|.+++.++.|.+... ..-. .. |. .+|. +..++.+.++|+
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-i~~~~~~~~g~Dvvid~~G~---~~~~~~~~~~l~ 222 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-LDPEKDPRRDYRAIYDASGD---PSLIDTLVRRLA 222 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-cChhhccCCCCCEEEECCCC---HHHHHHHHHhhh
Confidence 566556 77888888997 6677888888877764310 0000 01 44 4553 356788889999
Q ss_pred CCcEEEEEE
Q 043102 464 KDGLFVLQF 472 (525)
Q Consensus 464 pGG~~viq~ 472 (525)
++|++++--
T Consensus 223 ~~G~iv~~G 231 (308)
T TIGR01202 223 KGGEIVLAG 231 (308)
T ss_pred cCcEEEEEe
Confidence 999998643
No 295
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=46.47 E-value=22 Score=36.87 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=36.2
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER 441 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d 441 (525)
+.+.||||| +..+.+. |.+|+++++++.|++...+|++....+.
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~ 107 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSG 107 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence 345999999 6777775 9999999999999999999987654433
No 296
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.81 E-value=68 Score=32.62 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-------cC-CC--------------CC--------Cc---ccCcc--c
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-------AD-LE--------------RN--------DR---SFGHE--Y 450 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-------~g-l~--------------d~--------D~---~vg~~--~ 450 (525)
|..+++ .|.+|+.+|.+++.++.+++++.. .| +. .. |. .+... -
T Consensus 17 A~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~ 95 (288)
T PRK09260 17 AYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPEKLEL 95 (288)
T ss_pred HHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHH
Confidence 556665 499999999999999998765321 11 00 00 22 33322 2
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
...+|+++.+.++|+..+++.+-+.+
T Consensus 96 k~~~~~~l~~~~~~~~il~~~tSt~~ 121 (288)
T PRK09260 96 KKAVFETADAHAPAECYIATNTSTMS 121 (288)
T ss_pred HHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 45788899999999887777665544
No 297
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=45.60 E-value=33 Score=34.57 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=51.0
Q ss_pred hHHHHhccccccchhc-cccC-CCeehhhc---HH---HHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-------
Q 043102 378 NELFCLFLDESLTYSC-ALFK-VREVIFLG---TI---EVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------- 442 (525)
Q Consensus 378 nd~y~l~Ld~~m~ys~-a~f~-~~rVLDIG---a~---~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------- 442 (525)
+.....|=-+-|.-+. +++. ..|||++| ++ .+-++.-.+=+=|...++-++..++- |.-++
T Consensus 80 k~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~----gw~ek~nViil~ 155 (271)
T KOG1709|consen 80 KGVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW----GWREKENVIILE 155 (271)
T ss_pred chhhhhhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc----ccccccceEEEe
Confidence 3344445455554332 3333 34999999 22 11222223444566777766555543 32221
Q ss_pred -----------Cccc--------C--cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 443 -----------DRSF--------G--HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 443 -----------D~~v--------g--~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
|.|+ + -++...+++.+.|+|||+|++-.-.-
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred cchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 2222 1 35567889999999999999865443
No 298
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=45.20 E-value=37 Score=33.45 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHHhcCCE-EEEEcCChHHHHHHHHHH-HHcCCC-------CC--CcccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 406 TIEVVKRTGCK-YTGITLAEKQLKYAGIKV-KEADLE-------RN--DRSFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 406 a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~-~~~gl~-------d~--D~~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
++.+|+..|++ |++++.++++.+.|++.- ...-+. .. |..+........+....+.|+++|+++.-
T Consensus 113 ~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred HHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 67888888998 999999999988777642 000000 00 22111101134678889999999999754
No 299
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=44.69 E-value=35 Score=34.75 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC----C-----------------Cc---ccCcccHHHHHHHHHhc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER----N-----------------DR---SFGHEYMEEFFGCCESL 461 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d----~-----------------D~---~vg~~~~~~~f~~i~r~ 461 (525)
++.+|+..|++|+.++.|++..+.+++. |.+. . |. .+|. .......+.
T Consensus 160 a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~----~~~~~~~~~ 231 (324)
T cd08291 160 LVRLCKADGIKVINIVRRKEQVDLLKKI----GAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGG----GLTGQILLA 231 (324)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCc----HHHHHHHHh
Confidence 7788888899999999999988888652 2210 0 22 3342 224556788
Q ss_pred cCCCcEEEEEE
Q 043102 462 IAKDGLFVLQF 472 (525)
Q Consensus 462 LkpGG~~viq~ 472 (525)
|+++|++++-.
T Consensus 232 l~~~G~~v~~g 242 (324)
T cd08291 232 MPYGSTLYVYG 242 (324)
T ss_pred hCCCCEEEEEE
Confidence 99999998754
No 300
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=44.04 E-value=8.3 Score=39.96 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=54.9
Q ss_pred eehhhc---HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------HcCCCCC----Cc--------ccC-cccHHHHHH
Q 043102 400 EVIFLG---TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------EADLERN----DR--------SFG-HEYMEEFFG 456 (525)
Q Consensus 400 rVLDIG---a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------~~gl~d~----D~--------~vg-~~~~~~~f~ 456 (525)
-+||+| ..++...+.|.+.|.|++..-+..|++.=. ...+..+ |. |+. .......++
T Consensus 48 v~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~ 127 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALE 127 (293)
T ss_pred eeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHH
Confidence 679999 666666678999999999998888876522 0111111 44 222 345678899
Q ss_pred HHHhccCCCcEEEEEEecC
Q 043102 457 CCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~i~~ 475 (525)
++.|+|+|||.+++-.+..
T Consensus 128 e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 128 ELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHhcCCCceEEEEehh
Confidence 9999999999999977655
No 301
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=43.99 E-value=44 Score=34.31 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=42.7
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcC-CC--C--C-------------Cc---ccCcccHHHHHHHHHhccCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEAD-LE--R--N-------------DR---SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~g-l~--d--~-------------D~---~vg~~~~~~~f~~i~r~Lkp 464 (525)
++.+|+..|++|++++-|++..+.+++++.... +. + . |. .+| ...+..+.++|++
T Consensus 168 aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g----~~~~~~~~~~l~~ 243 (338)
T cd08295 168 VGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG----GKMLDAVLLNMNL 243 (338)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC----HHHHHHHHHHhcc
Confidence 778888889999999999998888876321000 00 0 0 22 233 2567888999999
Q ss_pred CcEEEEE
Q 043102 465 DGLFVLQ 471 (525)
Q Consensus 465 GG~~viq 471 (525)
+|+++.-
T Consensus 244 ~G~iv~~ 250 (338)
T cd08295 244 HGRIAAC 250 (338)
T ss_pred CcEEEEe
Confidence 9999853
No 302
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.62 E-value=45 Score=35.49 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=51.3
Q ss_pred eehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC--C----------cccC---------ccc
Q 043102 400 EVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN--D----------RSFG---------HEY 450 (525)
Q Consensus 400 rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~--D----------~~vg---------~~~ 450 (525)
+||=+| ++..|+..|+ +|..+|++++-++.|++.=...=.... + .++| -.-
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG 251 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSG 251 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccC
Confidence 888888 7777888887 999999999999999983111100000 0 0222 223
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.+..++..-..|+.||.+++-.+..
T Consensus 252 ~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 252 AEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred chHHHHHHHHHhccCCEEEEeccCC
Confidence 5566788889999999976654443
No 303
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=43.45 E-value=50 Score=33.32 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=42.9
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------Cc---ccCcccHHHHHHHHHhccCCCcEEEE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DR---SFGHEYMEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~---~vg~~~~~~~f~~i~r~LkpGG~~vi 470 (525)
++.+|+..|++|+.++.++++.+.+++. |.... |. .+|. ...++.+.+.|+++|++++
T Consensus 171 ~~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 171 IAQVLALTGPDVVLVGRHSEKLALARRL----GVETVLPDEAESEGGGFDVVVEATGS---PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred HHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCcEEeCccccccCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEE
Confidence 6788888899999999999999888762 32110 22 2232 3467778889999999987
Q ss_pred E
Q 043102 471 Q 471 (525)
Q Consensus 471 q 471 (525)
.
T Consensus 244 ~ 244 (319)
T cd08242 244 K 244 (319)
T ss_pred E
Confidence 3
No 304
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.10 E-value=21 Score=34.14 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=21.4
Q ss_pred ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 445 SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 445 ~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
|+-.+.-..++++|+|.|||||++-|-
T Consensus 59 Hlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 59 HLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred HHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 444555668899999999999999663
No 305
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=42.29 E-value=41 Score=35.77 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 75 MELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 75 ~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
.+||..-++++.....+.++..+ .-.|...+|....||+||+||=+.
T Consensus 65 ~~~~~~~~i~~~~g~~V~~id~~--------------~~~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 65 ANWWQENNVHLHSGVTIKTLGRD--------------TRELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHHHCCCEEEcCCEEEEEECC--------------CCEEEECCCCEEEcCEEEEccCCC
Confidence 47888888888776655556441 113555677778899999998654
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=42.21 E-value=60 Score=32.19 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=32.3
Q ss_pred cHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecCh
Q 043102 73 NMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHA 134 (525)
Q Consensus 73 n~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ha 134 (525)
++.+.++..|+++.. +...++.. .. .++.|.+.+|....||.||+||=+
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~--------~~----~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDL--------SD----RPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEe--------cC----CeeEEEeCCCCEEEeCEEEECCCC
Confidence 445566777888766 44344422 11 246677777778899999999965
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=41.49 E-value=89 Score=30.01 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=46.0
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~~ 452 (525)
.+||-.| ++.+++..|++|++++.+++..+.+++.-...-+... |. .++. .
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~---~ 212 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG---P 212 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC---H
Confidence 4677755 5677777899999999999888877654111001100 22 2221 1
Q ss_pred HHHHHHHhccCCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~ 472 (525)
...+.+.+.|+++|+++.-.
T Consensus 213 ~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 213 ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred HHHHHHHHhcccCCEEEEEc
Confidence 56777889999999998644
No 308
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=41.27 E-value=81 Score=30.68 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=51.5
Q ss_pred eehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc--------cc
Q 043102 400 EVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR--------SF 446 (525)
Q Consensus 400 rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~--------~v 446 (525)
-|||+| +..+.++ ..-.++.|+.|++....-.++.....+-+- |. .+
T Consensus 51 pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNF 130 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccC
Confidence 899999 4444443 245899999999999988888654322111 33 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEEec
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQFIS 474 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~i~ 474 (525)
.....-++++.+...|.+||.++--+.+
T Consensus 131 P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 131 PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3445668899999999998888654443
No 309
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.23 E-value=18 Score=32.90 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEK 425 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~e 425 (525)
++|.|+| |.++++ +|+.|+.+|+.+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e-~g~dv~atDI~~~ 47 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAE-RGFDVLATDINEK 47 (129)
T ss_pred CcEEEEccchHHHHHHHHHH-cCCcEEEEecccc
Confidence 4999999 777777 4999999999986
No 310
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=41.02 E-value=51 Score=33.94 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred Ceehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCC--------------CC--C-c---ccCccc
Q 043102 399 REVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLE--------------RN--D-R---SFGHEY 450 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~--------------d~--D-~---~vg~~~ 450 (525)
++||=+| ++.+|+..|++ |+.++.+++..+.+++.-...-+. .. | . .+|.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~-- 239 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV-- 239 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC--
Confidence 3555555 77888888996 789999999888775421100000 00 3 2 3342
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..+....++|++||++++-.
T Consensus 240 -~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 240 -PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -HHHHHHHHHHhhcCCEEEEEc
Confidence 357788889999999988643
No 311
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=40.88 E-value=47 Score=34.26 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCC
Q 043102 406 TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 406 a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~Lkp 464 (525)
++.+|+..|+ +|+.++-|++..+.+++.-...-+..+ |. .+| -...++.+.+.|++
T Consensus 188 a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g---~~~~~~~~~~~l~~ 264 (351)
T cd08233 188 TILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAG---VQATLDTAIDALRP 264 (351)
T ss_pred HHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCC---CHHHHHHHHHhccC
Confidence 7788888899 899999999988888542100000000 11 122 13567888999999
Q ss_pred CcEEEEEE
Q 043102 465 DGLFVLQF 472 (525)
Q Consensus 465 GG~~viq~ 472 (525)
+|+++.-.
T Consensus 265 ~G~~v~~g 272 (351)
T cd08233 265 RGTAVNVA 272 (351)
T ss_pred CCEEEEEc
Confidence 99988643
No 312
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.20 E-value=27 Score=38.04 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=29.4
Q ss_pred eCCEEEEecChHHHHHhhcCCCCHHHHhhccCCceeEecc
Q 043102 124 FYNSCVMALHAPDALKILGNQATFDETRTGGAFHDIFLHC 163 (525)
Q Consensus 124 ~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~~~vlHt 163 (525)
.+|.+||||+||..+.+|.. ..+ ++|+.+|.+||-+
T Consensus 83 ~WdtlILavtaDAY~~VL~q-l~~---~~L~~vk~iVLvS 118 (429)
T PF10100_consen 83 EWDTLILAVTADAYLDVLQQ-LPW---EVLKRVKSIVLVS 118 (429)
T ss_pred cccEEEEEechHHHHHHHHh-cCH---HHHhhCCEEEEEC
Confidence 59999999999999999984 444 4899999777643
No 313
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=38.87 E-value=64 Score=37.56 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 414 GCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 414 G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
.++++|+|+++++++.|+++++.+|+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~ 284 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAEL 284 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 45899999999999999999999998764
No 314
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=38.84 E-value=70 Score=34.50 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred eehhh----c--HHHHHHh-cC-CEEEEEcCChHHHHHHHHHHHHcCCCC-C------Cc--------------ccC-cc
Q 043102 400 EVIFL----G--TIEVVKR-TG-CKYTGITLAEKQLKYAGIKVKEADLER-N------DR--------------SFG-HE 449 (525)
Q Consensus 400 rVLDI----G--a~~lA~~-~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d-~------D~--------------~vg-~~ 449 (525)
+|||. | +++.+++ .| .+|+.-|+|++-++.++++++..++++ + |+ .+. ..
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfG 131 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPFG 131 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCCC
Confidence 56663 3 7777776 34 599999999999999999999999987 3 55 110 11
Q ss_pred cHHHHHHHHHhccCCCcEEEEEE
Q 043102 450 YMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 450 ~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
---.|+..+.+.+|.||.+.+..
T Consensus 132 Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 132 SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEE
T ss_pred CccHhHHHHHHHhhcCCEEEEec
Confidence 23588999999999999998754
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=38.78 E-value=68 Score=33.26 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=46.8
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcC---ChHHHHHHHHHHHHcCCC------------CC-Cc---ccCcccHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITL---AEKQLKYAGIKVKEADLE------------RN-DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdl---S~eql~~Ar~r~~~~gl~------------d~-D~---~vg~~~~~ 452 (525)
.+||=+| ++.+|+..|++|++++. |++..+.|++.-... +. .. |. .+|. +
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid~~g~---~ 249 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-VNSSKTPVAEVKLVGEFDLIIEATGV---P 249 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-ecCCccchhhhhhcCCCCEEEECcCC---H
Confidence 4677666 77888888999999987 677777766431100 00 00 33 3442 3
Q ss_pred HHHHHHHhccCCCcEEEEEEe
Q 043102 453 EFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~i 473 (525)
..+.+..++|++||++++-..
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred HHHHHHHHHccCCcEEEEEec
Confidence 478888999999999986543
No 316
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=38.60 E-value=25 Score=35.86 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=33.4
Q ss_pred Ceehhhc------HHHH-HHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 399 REVIFLG------TIEV-VKRTGCKYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 399 ~rVLDIG------a~~l-A~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
.+||||| ++.. ....++.+.|+||+..+++....-+...|....
T Consensus 107 ~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~ 157 (251)
T PF07091_consen 107 DSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHD 157 (251)
T ss_dssp SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEE
T ss_pred chhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcc
Confidence 4999999 4433 333578999999999999999999888776543
No 317
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=38.53 E-value=91 Score=31.39 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=37.4
Q ss_pred eehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC
Q 043102 400 EVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~ 442 (525)
++.||| .++|.+..-+ .++..|+++.-++.|.+.+++.++.++
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~ 68 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSER 68 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcce
Confidence 689999 6788876434 899999999999999999999998877
No 318
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=38.22 E-value=68 Score=35.17 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=79.9
Q ss_pred HHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCC--ceEeCCEEEEecChHHHHHhhcCCCCHHHHh
Q 043102 74 MMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDG--SREFYNSCVMALHAPDALKILGNQATFDETR 151 (525)
Q Consensus 74 ~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g--~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~ 151 (525)
|.+.|+..|+.+...+.+.++..+.+ +. ..|.+.++ ....+|+||+|+=+=-.-.|+.
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~---------~v--~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a--------- 328 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN---------RV--TRIHTRNHRDIPLRADHFVLASGSFFSNGLVA--------- 328 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC---------eE--EEEEecCCccceEECCEEEEccCCCcCHHHHh---------
Confidence 45666777988887777777754221 11 12443444 3678999999975442233333
Q ss_pred hccCCceeEeccCCCCCCCCCCCccccccccCCCCCCCCCCCCCeE---EEcCCCCCCcceeeEEEecCCCCCHHHHHHH
Q 043102 152 TGGAFHDIFLHCDKNSMPQNPAAWSAWSFLGSLDSKNLGETSLPYL---VTLNPDHAPEHTLLKWSTGPPVPFVAASKAS 228 (525)
Q Consensus 152 iLg~f~~~vlHtD~s~mP~~~~aWaswNy~~~~~~~nl~~~~~~~f---vTLNp~~~p~~il~~~~y~HPv~~~~a~~aq 228 (525)
-+..+.+.++.-|-. -|..|..|..=+|+.. +||+ |..|..-.|.
T Consensus 329 ~l~~i~Epif~L~v~-~~~~r~~W~~~~ff~~----------~p~~~~GV~~d~~lrp~--------------------- 376 (419)
T TIGR03378 329 EFDKIYEPIFGLDVL-QLPDRDQWYQHRFFAP----------HPFMQFGVKTDAQLRPS--------------------- 376 (419)
T ss_pred hcCceeeeccCCCcC-CCcchhhhcchhhcCC----------ChhhhcCceEccccCcc---------------------
Confidence 345555777766654 4777788887777642 2333 3333322221
Q ss_pred HHhhhhcC--CCCeEEeccCC-CCCCchhhhchHHHHHhhh
Q 043102 229 LELGHIQG--RRGIWFRGAYQ-GYGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 229 ~~l~~iqG--~~~~~fcGay~-g~GfHEdg~~Sgl~aA~~l 266 (525)
.+| -.|+|.||+=. ||..-+.|+-||++++..+
T Consensus 377 -----~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~ 412 (419)
T TIGR03378 377 -----RGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTAL 412 (419)
T ss_pred -----CCCcccccceEechhhcCCChHhcCCCchhHHHHHH
Confidence 122 46788888876 5666666666666665544
No 319
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=38.01 E-value=29 Score=37.82 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=46.2
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHH---HHH------------cC-CCC---------CCc---cc----------C
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIK---VKE------------AD-LER---------NDR---SF----------G 447 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r---~~~------------~g-l~d---------~D~---~v----------g 447 (525)
|...|++ |.+|+|+||.+.-++...+- +.+ .| |.- .|. .| .
T Consensus 25 A~~fA~~-G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pD 103 (436)
T COG0677 25 AAAFASA-GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVPTPLKKYREPD 103 (436)
T ss_pred HHHHHHc-CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEEEecCCcCCCCCCC
Confidence 7777875 99999999999766554321 111 11 100 033 22 1
Q ss_pred cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 448 HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 448 ~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+.....+.|...||+|-.+++.+.+.|
T Consensus 104 ls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 104 LSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 34567788999999999999988776654
No 320
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=37.54 E-value=87 Score=31.55 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=33.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------Cc---ccCcccHHHHHHHHHhccCCCcEE
Q 043102 414 GCKYTGITLAEKQLKYAGIKVKEADLERN-----------DR---SFGHEYMEEFFGCCESLIAKDGLF 468 (525)
Q Consensus 414 G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------D~---~vg~~~~~~~f~~i~r~LkpGG~~ 468 (525)
.++|+|+|.+++.++.|++. |+.+. |- ++......++++++...|++|..+
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~----g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv 75 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALEL----GIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIV 75 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHT----TSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEE
T ss_pred CeEEEEEeCCHHHHHHHHHC----CCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEE
Confidence 38999999999988877644 44332 33 556666777777777777776554
No 321
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=36.76 E-value=33 Score=34.01 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=48.8
Q ss_pred CCeehhhc------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-------------Cc------ccCcccH
Q 043102 398 VREVIFLG------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-------------DR------SFGHEYM 451 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-------------D~------~vg~~~~ 451 (525)
..+|||+| ++..|+. |+ .|+..|+.+.-.+.++-+++..|+... |- -..+..-
T Consensus 80 gkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~a 158 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTEA 158 (218)
T ss_pred cceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCchHH
Confidence 34999999 6666654 65 899999999888888888887776543 21 2234444
Q ss_pred HHHHHHHHhccCCCcEEEE
Q 043102 452 EEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~vi 470 (525)
...+. +.+.|+..|..++
T Consensus 159 ~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 159 DRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred HHHHH-HHHHHHhCCCEEE
Confidence 55566 6666676776666
No 322
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=36.33 E-value=27 Score=38.24 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=25.5
Q ss_pred CCeEEeccCCCCC-CchhhhchHHHHHhhhcC
Q 043102 238 RGIWFRGAYQGYG-FHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 238 ~~~~fcGay~g~G-fHEdg~~Sgl~aA~~llG 268 (525)
.|+|+||+|+.-| =--.++.||..||+.++.
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 5999999999765 456777899999999854
No 323
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.01 E-value=1.1e+02 Score=30.82 Aligned_cols=69 Identities=6% Similarity=0.105 Sum_probs=44.2
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHH-------HHcCC-C---------------CC----Cc-----ccCc--ccH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKV-------KEADL-E---------------RN----DR-----SFGH--EYM 451 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~-------~~~gl-~---------------d~----D~-----~vg~--~~~ 451 (525)
+..+++. |.+|+.+|.+++.++.+++++ .+.|. . +. |+ .+.. .-.
T Consensus 19 a~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~aDlVi~av~e~~~~k 97 (282)
T PRK05808 19 AQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDADLVIEAATENMDLK 97 (282)
T ss_pred HHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeeeecccccHHHH
Confidence 5566664 999999999999998776543 23331 1 10 12 2221 122
Q ss_pred HHHHHHHHhccCCCcEEEEEEecC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..+|+++.+.++|+..++..+.+.
T Consensus 98 ~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 98 KKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred HHHHHHHHhhCCCCcEEEECCCCC
Confidence 589999999999998775544443
No 324
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.45 E-value=24 Score=33.48 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCcEEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~ 472 (525)
+..+++++.|+|||||.+++..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEEe
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=35.00 E-value=54 Score=33.44 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC--------------CcccCcccHHHHH
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN--------------DRSFGHEYMEEFF 455 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~--------------D~~vg~~~~~~~f 455 (525)
+.+||-.| ++.+|+..|+ +|++++.|+++.+.+++.-...=+..+ |..+....-...+
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~~ 245 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAAL 245 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHHH
Confidence 34666654 6778888898 899999999988876543100000000 2211110113568
Q ss_pred HHHHhccCCCcEEEEE
Q 043102 456 GCCESLIAKDGLFVLQ 471 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq 471 (525)
+.+.+.|+++|+++.-
T Consensus 246 ~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 246 ASALRVVRPGGTVVQV 261 (339)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 8899999999999853
No 326
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=34.56 E-value=60 Score=38.73 Aligned_cols=47 Identities=15% Similarity=0.351 Sum_probs=34.6
Q ss_pred HHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 75 MELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 75 ~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
.+||+..|+++....-++++..+ .-.|.+.+|....||+||+||=+.
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~--------------~~~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQ--------------EKVIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCC--------------CcEEEECCCcEEECCEEEECCCCC
Confidence 57888889999887766666431 124566778778999999998664
No 327
>PLN02827 Alcohol dehydrogenase-like
Probab=34.56 E-value=55 Score=34.62 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred CCeehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCC--C---------------C-Cc---ccCc
Q 043102 398 VREVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLE--R---------------N-DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~--d---------------~-D~---~vg~ 448 (525)
.++||=+| ++.+|+..|+ .|+++|.|++..+.|++.-...-+. + . |. .+|.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~ 273 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGD 273 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCC
Confidence 34666656 7788888898 5999999999888875431100000 0 0 22 3342
Q ss_pred ccHHHHHHHHHhccCCC-cEEEEE
Q 043102 449 EYMEEFFGCCESLIAKD-GLFVLQ 471 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpG-G~~viq 471 (525)
+..+....++|++| |++++-
T Consensus 274 ---~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 274 ---TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ---hHHHHHHHHhhccCCCEEEEE
Confidence 24577788899998 999863
No 328
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=34.38 E-value=72 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------CcccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN------------DRSFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------D~~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
++.+|+..|++|+.++-|+++.+.+++.-...-+... |..+..-.-......+.+.|+++|+++.-.
T Consensus 178 ~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 178 AVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 6778888899999999999998887542111001111 221111011356788899999999997643
No 329
>PRK11524 putative methyltransferase; Provisional
Probab=34.02 E-value=61 Score=33.17 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=32.5
Q ss_pred CCeehhh--c---HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 398 VREVIFL--G---TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 398 ~~rVLDI--G---a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
++.|||- | +..+|++.|-+..|++++++-++.|++|++.
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 3477773 4 6667888899999999999999999999864
No 330
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=33.90 E-value=45 Score=33.58 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChH----HHHHHHHHHHHcC-CCCC-------------Cc---ccCc
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEK----QLKYAGIKVKEAD-LERN-------------DR---SFGH 448 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~e----ql~~Ar~r~~~~g-l~d~-------------D~---~vg~ 448 (525)
+.+||-+| .-+++.- ....|.+|.+|+. -++.|++|-.-.. ++|- |. .|..
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ 153 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQ 153 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SS
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCCC
Confidence 34899999 2344432 2579999999994 4555555521000 1111 22 3333
Q ss_pred c-cHHHHHHHHHhccCCCcEEEEE
Q 043102 449 E-YMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 449 ~-~~~~~f~~i~r~LkpGG~~viq 471 (525)
+ +-+-+...+...||+||.+++-
T Consensus 154 p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 154 PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhhccCCcEEEEE
Confidence 3 4455677788899999999873
No 331
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=33.79 E-value=59 Score=32.24 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 449 EYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 449 ~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
.+.-.-|+....+|++|+.+++.+.
T Consensus 124 ~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 124 EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHHHhCccCCCCCEEEEEec
Confidence 5677778889999999999998654
No 332
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=32.93 E-value=75 Score=32.96 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~LkpG 465 (525)
+.++++..|+++++..-+.+-.++|++.-.+.-+.-. |+ .||. +-|+.-..+|||+
T Consensus 163 l~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~----dt~~~sl~~Lk~~ 238 (336)
T KOG1197|consen 163 LCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGK----DTFAKSLAALKPM 238 (336)
T ss_pred HHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccc----hhhHHHHHHhccC
Confidence 5677877799999999999998888876433222111 33 5564 4577778999999
Q ss_pred cEEEE
Q 043102 466 GLFVL 470 (525)
Q Consensus 466 G~~vi 470 (525)
|.++-
T Consensus 239 G~mVS 243 (336)
T KOG1197|consen 239 GKMVS 243 (336)
T ss_pred ceEEE
Confidence 99985
No 333
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=32.68 E-value=31 Score=36.93 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCCh
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAE 424 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~ 424 (525)
++.++|||| +..++++ |++|++||.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~ 243 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP 243 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh
Confidence 345999999 7778875 99999999664
No 334
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.48 E-value=57 Score=33.04 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=46.2
Q ss_pred Ceehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCCC---------------CcccCcccHHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLERN---------------DRSFGHEYMEEFF 455 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d~---------------D~~vg~~~~~~~f 455 (525)
.+||-+| ++.+|+..|++ |+.++-|+++.+.+++.-...-+... |..+..-.-....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~ 240 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTL 240 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHH
Confidence 4777766 67888888987 89999999988887543110000000 2211111114678
Q ss_pred HHHHhccCCCcEEEEE
Q 043102 456 GCCESLIAKDGLFVLQ 471 (525)
Q Consensus 456 ~~i~r~LkpGG~~viq 471 (525)
..+.+.|+++|+++.-
T Consensus 241 ~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 241 EQAIEYARRGGTVLVF 256 (334)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 8889999999999753
No 335
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=32.35 E-value=72 Score=32.28 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC---------C--CcccCcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER---------N--DRSFGHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d---------~--D~~vg~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
++.+|+..|++|+.++-+++..+.+++. |... + |..+........++.+.+.|+++|++++..
T Consensus 183 ~~~la~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 183 ALQIARYQGAEVFAFTRSGEHQELAREL----GADWAGDSDDLPPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHHHCCCeEEEEcCChHHHHHHHHh----CCcEEeccCccCCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc
Confidence 6678888899999999999888887442 3211 0 221111112357889999999999999754
No 336
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=32.19 E-value=73 Score=33.26 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC----------------Cc---ccCcccHHHHHHHHHhccCCCc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN----------------DR---SFGHEYMEEFFGCCESLIAKDG 466 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~---~vg~~~~~~~f~~i~r~LkpGG 466 (525)
++.+|+..|++|+.++.+++....+.++ .|.... |. .+|. ...++.+.+.|++||
T Consensus 196 av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~---~~~~~~~~~~l~~~G 269 (357)
T PLN02514 196 GVKIAKAMGHHVTVISSSDKKREEALEH---LGADDYLVSSDAAEMQEAADSLDYIIDTVPV---FHPLEPYLSLLKLDG 269 (357)
T ss_pred HHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCcEEecCCChHHHHHhcCCCcEEEECCCc---hHHHHHHHHHhccCC
Confidence 7788888899999999888776555432 232110 22 2332 346777889999999
Q ss_pred EEEEEEe
Q 043102 467 LFVLQFI 473 (525)
Q Consensus 467 ~~viq~i 473 (525)
+++.-..
T Consensus 270 ~iv~~G~ 276 (357)
T PLN02514 270 KLILMGV 276 (357)
T ss_pred EEEEECC
Confidence 9987543
No 337
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=32.05 E-value=1.5e+02 Score=30.07 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc----------CC----------------CCC----Cc-----ccCcc-
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA----------DL----------------ERN----DR-----SFGHE- 449 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~----------gl----------------~d~----D~-----~vg~~- 449 (525)
|..+++ .|.+|+.+|.+++.++.+++++++. |. .+. |+ ++...
T Consensus 19 A~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 97 (291)
T PRK06035 19 AQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKL 97 (291)
T ss_pred HHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHHhCCCCEEEEcCcCcH
Confidence 555565 4999999999999998877654321 11 000 12 33322
Q ss_pred -cHHHHHHHHHhccCCCcEEE
Q 043102 450 -YMEEFFGCCESLIAKDGLFV 469 (525)
Q Consensus 450 -~~~~~f~~i~r~LkpGG~~v 469 (525)
-...+|+++.+.++|+..++
T Consensus 98 ~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 98 DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHHHHHHHHHHhhCCCCeEEE
Confidence 25788999999999887664
No 338
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.94 E-value=70 Score=32.96 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=45.7
Q ss_pred Ceehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCC----C-----------------Cc---cc
Q 043102 399 REVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLER----N-----------------DR---SF 446 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d----~-----------------D~---~v 446 (525)
.+||=.| ++.+|+..|+ .|++++.+++..+.+++. |... . |. .+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 3565555 7788888898 599999998888777652 3210 0 11 22
Q ss_pred CcccHHHHHHHHHhccCCCcEEEEEE
Q 043102 447 GHEYMEEFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 447 g~~~~~~~f~~i~r~LkpGG~~viq~ 472 (525)
|. ...+..+.+.|+++|+++.-.
T Consensus 244 g~---~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 GG---QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CC---HHHHHHHHHHhhcCCEEEEec
Confidence 21 357889999999999998543
No 339
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=31.53 E-value=76 Score=33.04 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 74 MMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 74 ~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
+.++++..|+++.. +...++..+ +. .|.+.+|++..||+||+||=+.
T Consensus 60 ~~~~~~~~gv~~~~-~~v~~id~~-----------~~---~V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 60 LRRLARQAGARFVI-AEATGIDPD-----------RR---KVLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred HHHHHHhcCCEEEE-EEEEEEecc-----------cC---EEEECCCCcccccEEEEccCCC
Confidence 45777778888765 344555331 11 4666778778899999998654
No 340
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=30.45 E-value=95 Score=34.10 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC---------CCc---ccCcccHHHHHH-
Q 043102 397 KVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER---------NDR---SFGHEYMEEFFG- 456 (525)
Q Consensus 397 ~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d---------~D~---~vg~~~~~~~f~- 456 (525)
.+.+|+=+| ....++..|++|+.+|.++.....|.. .|..- -|. ..|. +..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~~v~~l~eal~~aDVVI~aTG~---~~vI~~ 283 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGFRVMTMEEAAELGDIFVTATGN---KDVITA 283 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCCEecCHHHHHhCCCEEEECCCC---HHHHHH
Confidence 345788777 344455579999999999876544432 12211 044 3343 33454
Q ss_pred HHHhccCCCcEEEEEEecCCCcchh-------cccCchhHHhhcccCCC
Q 043102 457 CCESLIAKDGLFVLQFISIPDERYN-------EFRLSSDFMKEYIFPGG 498 (525)
Q Consensus 457 ~i~r~LkpGG~~viq~i~~~~~~~~-------~~~~~~~fi~kYIFPGg 498 (525)
+....+|+|++++.-...-.+-... ......+.+.+|.||.|
T Consensus 284 ~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g 332 (425)
T PRK05476 284 EHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDG 332 (425)
T ss_pred HHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCC
Confidence 6889999999887533222111110 11123556888889864
No 341
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=30.33 E-value=40 Score=30.93 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=19.7
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEK 425 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~e 425 (525)
.+|.|+| |..|++. |+.|+.+|+.+.
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~ 47 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR 47 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S
T ss_pred CcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc
Confidence 4999999 7777764 999999999987
No 342
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=30.23 E-value=1.9e+02 Score=28.80 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~LkpG 465 (525)
++.+++..|++|+.++.++++.+.+++.-...-+... |. .+|. ..+..+.+.|+++
T Consensus 183 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~----~~~~~~~~~l~~~ 258 (342)
T cd08266 183 AIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGA----ATWEKSLKSLARG 258 (342)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcH----HHHHHHHHHhhcC
Confidence 5667777899999999999888777542110001000 11 2232 3456677889999
Q ss_pred cEEEEEE
Q 043102 466 GLFVLQF 472 (525)
Q Consensus 466 G~~viq~ 472 (525)
|+++...
T Consensus 259 G~~v~~~ 265 (342)
T cd08266 259 GRLVTCG 265 (342)
T ss_pred CEEEEEe
Confidence 9988654
No 343
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=30.09 E-value=89 Score=32.88 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=27.7
Q ss_pred CCCeEEeccCCCC-----CCchhhhchHHHHHhhhcCCcccc
Q 043102 237 RRGIWFRGAYQGY-----GFHEDGLKDLSINSCMTYGEECFF 273 (525)
Q Consensus 237 ~~~~~fcGay~g~-----GfHEdg~~Sgl~aA~~llG~~~pf 273 (525)
..+||-||+=... ++-.-+..+|..+|..|+|.+.++
T Consensus 265 ~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~ 306 (377)
T PRK04965 265 APDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPL 306 (377)
T ss_pred CCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCccc
Confidence 5789999986532 344557888999999999977544
No 344
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=29.99 E-value=70 Score=33.92 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHhcCCEEEEEcCChHH-HHHHHHHHHHcCCCC---------------C-Cc---ccCcccHHHHHHHHHhccCCC
Q 043102 406 TIEVVKRTGCKYTGITLAEKQ-LKYAGIKVKEADLER---------------N-DR---SFGHEYMEEFFGCCESLIAKD 465 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eq-l~~Ar~r~~~~gl~d---------------~-D~---~vg~~~~~~~f~~i~r~LkpG 465 (525)
++.+|+..|++|+.++.+++. .+.+++ .|.+. . |. .+|. +..++.+.+.|++|
T Consensus 194 avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~---~~~~~~~~~~l~~~ 266 (375)
T PLN02178 194 AVKIGKAFGLRVTVISRSSEKEREAIDR----LGADSFLVTTDSQKMKEAVGTMDFIIDTVSA---EHALLPLFSLLKVS 266 (375)
T ss_pred HHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCcEEEcCcCHHHHHHhhCCCcEEEECCCc---HHHHHHHHHhhcCC
Confidence 778888889999999988654 444432 23210 0 22 2332 34677888999999
Q ss_pred cEEEEEE
Q 043102 466 GLFVLQF 472 (525)
Q Consensus 466 G~~viq~ 472 (525)
|+++.-.
T Consensus 267 G~iv~vG 273 (375)
T PLN02178 267 GKLVALG 273 (375)
T ss_pred CEEEEEc
Confidence 9998644
No 345
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=29.80 E-value=65 Score=33.79 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=43.5
Q ss_pred Ceehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC---------------C-Cc---ccCcccHH
Q 043102 399 REVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER---------------N-DR---SFGHEYME 452 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d---------------~-D~---~vg~~~~~ 452 (525)
++||=+| ++.+|+..|++|+.++.+++....+.+ +.|... . |. .+| -.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---~~ 258 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---AV 258 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCcEEEcCCCHHHHHhhcCCCCEEEECCC---CH
Confidence 3666566 778888889999999888765433221 122210 0 33 333 23
Q ss_pred HHHHHHHhccCCCcEEEEEE
Q 043102 453 EFFGCCESLIAKDGLFVLQF 472 (525)
Q Consensus 453 ~~f~~i~r~LkpGG~~viq~ 472 (525)
..++.+.++|++||++++-.
T Consensus 259 ~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 259 HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred HHHHHHHHHhcCCcEEEEeC
Confidence 46778889999999998643
No 346
>PRK13699 putative methylase; Provisional
Probab=29.79 E-value=44 Score=33.29 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVL 470 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~vi 470 (525)
...+|++++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 46789999999999999875
No 347
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=29.74 E-value=1e+02 Score=34.20 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=37.3
Q ss_pred cCccHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEec
Q 043102 70 TYPNMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMAL 132 (525)
Q Consensus 70 tfPn~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ 132 (525)
.=.||-+.++++|+++.-...+..+...++ .. ..|.+.+|.+..+|+||+|.
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~---------~~--~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDN---------EV--LGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCC---------ce--EEEEccCCcEEecCEEEEcc
Confidence 347888999999998877766655544211 11 24566788889999999996
No 348
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.38 E-value=65 Score=32.48 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHH
Q 043102 397 KVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVK 435 (525)
Q Consensus 397 ~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~ 435 (525)
++..||||| +..+++. +.+|+.|++++...+..+++..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh
Confidence 345999999 7888875 6999999999999999998765
No 349
>PRK11524 putative methyltransferase; Provisional
Probab=29.36 E-value=46 Score=34.04 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq 471 (525)
...+|.++.++|||||.+++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 467899999999999999984
No 350
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=29.15 E-value=39 Score=37.15 Aligned_cols=31 Identities=10% Similarity=-0.181 Sum_probs=25.3
Q ss_pred CCeEEeccCCCCC-CchhhhchHHHHHhhhcC
Q 043102 238 RGIWFRGAYQGYG-FHEDGLKDLSINSCMTYG 268 (525)
Q Consensus 238 ~~~~fcGay~g~G-fHEdg~~Sgl~aA~~llG 268 (525)
+|+|+||+|+.-| =--.+..||..+|+.+++
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFPGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5999999999654 446677999999999854
No 351
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.04 E-value=1e+02 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecCh
Q 043102 74 MMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHA 134 (525)
Q Consensus 74 ~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~ha 134 (525)
|.+..++.|+++++...+-+|.+++|+ |+.+.+.+|.....|.||.+...
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~-----------g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVEGGK-----------GVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEeCCc-----------ceEEeccccceeccceeEecCch
Confidence 566667779999999999888775442 67888888766789999999888
No 352
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.92 E-value=2e+02 Score=29.53 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=48.3
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-------cCC-CCC-------------------Cc-----ccC--cccH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-------ADL-ERN-------------------DR-----SFG--HEYM 451 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-------~gl-~d~-------------------D~-----~vg--~~~~ 451 (525)
|..+|.. |.+|+.+|.+++.++.+++++++ .|. .+. |+ .+. .+-.
T Consensus 21 A~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~d~ViEav~E~~~~K 99 (286)
T PRK07819 21 AEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVK 99 (286)
T ss_pred HHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhCCCCEEEEecccCHHHH
Confidence 6666764 99999999999999998887543 221 111 11 221 2234
Q ss_pred HHHHHHHHhcc-CCCcEEEEEEecCCC
Q 043102 452 EEFFGCCESLI-AKDGLFVLQFISIPD 477 (525)
Q Consensus 452 ~~~f~~i~r~L-kpGG~~viq~i~~~~ 477 (525)
...|+.+.+.+ +||..++-.+.+.+.
T Consensus 100 ~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 100 TEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred HHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 57899999999 788888776665553
No 353
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=28.89 E-value=1.2e+02 Score=33.53 Aligned_cols=43 Identities=7% Similarity=0.136 Sum_probs=25.2
Q ss_pred Hhccc--eeeeccEEEEEecCCCceeeCccCCcccEEEEeCCC--c--eEeCCEEEEecCh
Q 043102 80 SLGVD--MEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDG--S--REFYNSCVMALHA 134 (525)
Q Consensus 80 ~~gv~--~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g--~--~e~fD~VV~A~ha 134 (525)
..|++ ++....+.+|+.+. +++.|.+.++ . ++.||.||+|+=.
T Consensus 123 ~fgl~~~I~~~t~V~~V~~~~------------~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 123 EFKIEEMVRFETEVVRVEPVD------------GKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HcCCcceEEecCEEEEEeecC------------CeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 33555 55666666664421 2466655432 2 4679999999853
No 354
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=28.71 E-value=79 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.3
Q ss_pred ccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 82 GVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 82 gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
|+++..+..+.++..+ + +++.|++.+|....+|+||+|+-+-
T Consensus 148 G~~i~~~~~V~~i~~~----------~--~~~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 148 RLTLHFNTEITSLERD----------G--EGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred CcEEEeCCEEEEEEEc----------C--CeEEEEeCCCCEEEcCEEEEcCCcc
Confidence 5666555555555431 1 1477888888667899999998754
No 355
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=28.31 E-value=93 Score=31.83 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=42.5
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC----C--------------CcccCcccHHHHHHHHHhccCCCcE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER----N--------------DRSFGHEYMEEFFGCCESLIAKDGL 467 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d----~--------------D~~vg~~~~~~~f~~i~r~LkpGG~ 467 (525)
++.+|+..|++|+.++.+++.++.+++. |... . |..+....-...+..+.+.|+++|+
T Consensus 179 ~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~ 254 (333)
T cd08296 179 AVQYAAKMGFRTVAISRGSDKADLARKL----GAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAISALVGGLAPRGK 254 (333)
T ss_pred HHHHHHHCCCeEEEEeCChHHHHHHHHc----CCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHHHHHHHHcccCCE
Confidence 7788888899999999999888887542 2210 0 1111100124577888899999999
Q ss_pred EEEEE
Q 043102 468 FVLQF 472 (525)
Q Consensus 468 ~viq~ 472 (525)
++.-.
T Consensus 255 ~v~~g 259 (333)
T cd08296 255 LLILG 259 (333)
T ss_pred EEEEe
Confidence 98643
No 356
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.17 E-value=1.9e+02 Score=31.32 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=42.0
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHH---------------HHHcCC-------CCCCc---ccCc----------cc
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIK---------------VKEADL-------ERNDR---SFGH----------EY 450 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r---------------~~~~gl-------~d~D~---~vg~----------~~ 450 (525)
|..++++ |.+|+|+|.+++.++..++- ..+.|. ++.|. .|+. ..
T Consensus 19 A~~La~~-G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~dl~~ 97 (415)
T PRK11064 19 AAAFASR-QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEPDLTY 97 (415)
T ss_pred HHHHHhC-CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCcChHH
Confidence 6667764 99999999999877753210 111121 01133 3332 45
Q ss_pred HHHHHHHHHhccCCCcEEEEEEecC
Q 043102 451 MEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
.....+.+...|++|-.+++.+.+.
T Consensus 98 v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 98 VEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 6667788899998877666554433
No 357
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=27.74 E-value=2.2e+02 Score=28.96 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=44.8
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------HcCCC---------------CC-------Cc---ccC--cccH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------EADLE---------------RN-------DR---SFG--HEYM 451 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------~~gl~---------------d~-------D~---~vg--~~~~ 451 (525)
|..++. .|.+|+.+|.|++.++.++++++ +.|.- .. |. +|. .+-.
T Consensus 20 A~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~~~~k 98 (295)
T PLN02545 20 AQLAAA-AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVESEDLK 98 (295)
T ss_pred HHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccCHHHH
Confidence 555565 49999999999999987766542 22210 00 22 333 3445
Q ss_pred HHHHHHHHhccCCCcEEEEEEecC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
..+|+++...++|+..++..+.+.
T Consensus 99 ~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 99 KKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred HHHHHHHHhhCCCCcEEEECCCCC
Confidence 678999999999988766444443
No 358
>COG4734 ArdA Antirestriction protein [General function prediction only]
Probab=27.51 E-value=27 Score=33.46 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCCCCCCCccccCCCCCCcceeeeeeccCCC----------cccccc-cccCccHHHHHHHhcc
Q 043102 30 KTDPASYPGRVIPGPQCPGTAWVRTERVFLPP----------LTIRGY-VVTYPNMMELFESLGV 83 (525)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~~~~~~~~~r~f~~p----------~~~~~~-~~tfPn~~~~~~~~gv 83 (525)
.+-||+|-|-||-|- -+-...|.+| +++++| ||..||+..||+.-.+
T Consensus 5 t~~~A~yv~gv~y~~-------y~~gsi~t~~fqe~vsaml~~srfPnvmVkCpnceg~~e~Ct~ 62 (193)
T COG4734 5 TTTPAVYVGGVTYHK-------YNCGSIFTKWFQETVSAMLFDSRFPNVMVKCPNCEGFYEACTA 62 (193)
T ss_pred cccchHHhchhhcce-------eeccccccHHHHHHHHHHHHhhcCccceeeccchhhHHHHHHh
Confidence 356888888776542 2334567777 678899 9999999999998743
No 359
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=27.42 E-value=85 Score=34.15 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=25.7
Q ss_pred EEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCceeEeccCCCCCC
Q 043102 113 CTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFHDIFLHCDKNSMP 169 (525)
Q Consensus 113 v~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~~~vlHtD~s~mP 169 (525)
+.|.++++.+..+|.||+||=.-.. .-++ .+-+=-+++..+-..|...=|++.|
T Consensus 143 f~v~~~~~~~~~a~~vILAtGG~S~-p~~G--S~G~gy~~a~~lGh~i~~~~PaL~~ 196 (409)
T PF03486_consen 143 FGVKTKNGGEYEADAVILATGGKSY-PKTG--SDGSGYRIAKKLGHTITPPYPALVP 196 (409)
T ss_dssp EEEEETTTEEEEESEEEE----SSS-GGGT---SSHHHHHHHHTT--EEEEEEES--
T ss_pred eEeeccCcccccCCEEEEecCCCCc-cccC--CCcHHHHHHHHCCCcEecCCCccCC
Confidence 6677767778999999999754322 2223 2223334444444555555555555
No 360
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=26.66 E-value=1.2e+02 Score=31.09 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=40.4
Q ss_pred HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHHcCCCCC---------------------Cc---ccCcccHHHHHHHHHh
Q 043102 406 TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKEADLERN---------------------DR---SFGHEYMEEFFGCCES 460 (525)
Q Consensus 406 a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------------------D~---~vg~~~~~~~f~~i~r 460 (525)
++++|+..| ++|+.++.+++..+.+++. |.+.- |. .+|. ...++.+.+
T Consensus 182 ~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~---~~~~~~~~~ 254 (345)
T cd08286 182 ALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI---PATFELCQE 254 (345)
T ss_pred HHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCCCCEEEECCCC---HHHHHHHHH
Confidence 677888889 7999999998887776642 22100 22 2221 345788889
Q ss_pred ccCCCcEEEEE
Q 043102 461 LIAKDGLFVLQ 471 (525)
Q Consensus 461 ~LkpGG~~viq 471 (525)
.|+++|+++.-
T Consensus 255 ~l~~~g~~v~~ 265 (345)
T cd08286 255 LVAPGGHIANV 265 (345)
T ss_pred hccCCcEEEEe
Confidence 99999999854
No 361
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.47 E-value=2.3e+02 Score=29.85 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=45.3
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHH-------HcCCCCC-----------------Cc-----ccC--cccHHHH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVK-------EADLERN-----------------DR-----SFG--HEYMEEF 454 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~-------~~gl~d~-----------------D~-----~vg--~~~~~~~ 454 (525)
|..+|. .|.+|+..|.+++.++.++++++ +.|+... |+ ++. .+-....
T Consensus 23 A~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~l 101 (321)
T PRK07066 23 VARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREALKLEL 101 (321)
T ss_pred HHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHH
Confidence 556665 59999999999999888777553 2332111 22 222 1224588
Q ss_pred HHHHHhccCCCcEEEEEEecC
Q 043102 455 FGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq~i~~ 475 (525)
|+++.+.++|+-.+.-.+.+.
T Consensus 102 f~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 102 HERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred HHHHHHhCCCCeEEEECCCcc
Confidence 999999999998655544443
No 362
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=26.45 E-value=1.2e+02 Score=32.02 Aligned_cols=36 Identities=8% Similarity=0.245 Sum_probs=28.3
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE 436 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~ 436 (525)
+|.-|| .-++++ .-++|+.|||++.|++.-+-+++.
T Consensus 66 rivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 66 RIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred EEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHHH
Confidence 777777 334554 478999999999999998888754
No 363
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=26.14 E-value=1.3e+02 Score=32.81 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=46.6
Q ss_pred cCCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---------Cc---ccCcccHHHHHH
Q 043102 396 FKVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN---------DR---SFGHEYMEEFFG 456 (525)
Q Consensus 396 f~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~---------D~---~vg~~~~~~~f~ 456 (525)
....+|+=+| ...+++..|++|+.+|.++...+.|++. |...- |. +.|. +..+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~~~~~~~e~v~~aDVVI~atG~---~~~i~ 272 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GYEVMTMEEAVKEGDIFVTTTGN---KDIIT 272 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CCEEccHHHHHcCCCEEEECCCC---HHHHH
Confidence 3455888888 4556666799999999999877776642 32110 44 3343 34454
Q ss_pred -HHHhccCCCcEEEEEE
Q 043102 457 -CCESLIAKDGLFVLQF 472 (525)
Q Consensus 457 -~i~r~LkpGG~~viq~ 472 (525)
...+.+|+||+++.-.
T Consensus 273 ~~~l~~mk~GgilvnvG 289 (413)
T cd00401 273 GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHhcCCCCcEEEEeC
Confidence 4589999999997543
No 364
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=25.92 E-value=74 Score=35.76 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.9
Q ss_pred ccCCCeehhhc-------HHHHHHhcCCEEEEEcCChHHHHHHHHH
Q 043102 395 LFKVREVIFLG-------TIEVVKRTGCKYTGITLAEKQLKYAGIK 433 (525)
Q Consensus 395 ~f~~~rVLDIG-------a~~lA~~~G~~VtGIdlS~eql~~Ar~r 433 (525)
.....+||=|| ++.+|+..|++|+.+|.+++-++.|++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34456999999 8888888999999999999999888773
No 365
>PRK13699 putative methylase; Provisional
Probab=25.76 E-value=93 Score=30.94 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=32.0
Q ss_pred Ceehhh--c---HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc
Q 043102 399 REVIFL--G---TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 399 ~rVLDI--G---a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
+.|||- | +..+|++.|-+..|++++++-.+.|.+|+++.
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 467773 3 66677778999999999999999999998763
No 366
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=25.76 E-value=56 Score=32.37 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=61.0
Q ss_pred cccccchHHHHhccccccchhccccCCCeehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCCC---
Q 043102 372 RHYDLSNELFCLFLDESLTYSCALFKVREVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLERN--- 442 (525)
Q Consensus 372 ~hYDl~nd~y~l~Ld~~m~ys~a~f~~~rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~--- 442 (525)
.||||-.|.=+++.=..+.-+-+ ++.+-|+| +.-+|+ +--+|.+|..++.-.++|.++++-.|+..-
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va---~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv 85 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVA---EDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGDVNWEVV 85 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHh---hhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCCcceEEE
Confidence 46666555544433322221111 23667777 444444 456999999999999999999866665332
Q ss_pred --Cc-c-----------------cCcccHHHHHHHHHhccCCCcEEEEEEecC
Q 043102 443 --DR-S-----------------FGHEYMEEFFGCCESLIAKDGLFVLQFISI 475 (525)
Q Consensus 443 --D~-~-----------------vg~~~~~~~f~~i~r~LkpGG~~viq~i~~ 475 (525)
|+ + +=.+..-..+..+...||.++.++=|..-.
T Consensus 86 ~gDA~~y~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~ 138 (252)
T COG4076 86 VGDARDYDFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRI 138 (252)
T ss_pred ecccccccccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhh
Confidence 44 1 112233345677777889999988776543
No 367
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.88 E-value=2.7e+02 Score=28.27 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-------cCC-C--------------CC-----Cc-----ccCc--ccH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-------ADL-E--------------RN-----DR-----SFGH--EYM 451 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-------~gl-~--------------d~-----D~-----~vg~--~~~ 451 (525)
|..+++. |.+|+.+|.+++.++.+.+++.+ .|. . +. |+ .+.. .-.
T Consensus 20 A~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vieavpe~~~~k 98 (292)
T PRK07530 20 AHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLADCDLVIEAATEDETVK 98 (292)
T ss_pred HHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcCCCEEEEcCcCCHHHH
Confidence 5666664 99999999999999887654332 121 0 00 22 3322 235
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
..+|+++...++|+..++..+.+.+
T Consensus 99 ~~~~~~l~~~~~~~~ii~s~ts~~~ 123 (292)
T PRK07530 99 RKIFAQLCPVLKPEAILATNTSSIS 123 (292)
T ss_pred HHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 6889999999999987765554443
No 368
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=24.32 E-value=1.2e+02 Score=28.90 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-------cC-CCCC-------------------Cc-----ccC--cccH
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-------AD-LERN-------------------DR-----SFG--HEYM 451 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-------~g-l~d~-------------------D~-----~vg--~~~~ 451 (525)
|..+|. .|.+|+-+|.|+++++.+++++++ .| +... |+ ++. .+-.
T Consensus 15 A~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~adlViEai~E~l~~K 93 (180)
T PF02737_consen 15 AALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDADLVIEAIPEDLELK 93 (180)
T ss_dssp HHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTESEEEE-S-SSHHHH
T ss_pred HHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhheehhhccccHHHH
Confidence 666666 499999999999999999998765 12 2111 11 221 2335
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCC
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
...|+++.+.+.|+-.+...+-+.+
T Consensus 94 ~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 94 QELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp HHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred HHHHHHHHHHhCCCceEEecCCCCC
Confidence 7899999999999999988776554
No 369
>PRK10742 putative methyltransferase; Provisional
Probab=24.11 E-value=1.1e+02 Score=31.26 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=31.6
Q ss_pred eehhhc------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHc
Q 043102 400 EVIFLG------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEA 437 (525)
Q Consensus 400 rVLDIG------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~ 437 (525)
+|||+= ++.+|.+ ||+|++|+-|+......++.++.+
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHh
Confidence 677764 8888885 999999999999999998888764
No 370
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=24.03 E-value=1.1e+02 Score=31.18 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCC
Q 043102 406 TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 406 a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~Lkp 464 (525)
++.+|+..|+ +|+.++-|++..+.+++.-...-+..+ |. .+| -...++.+.+.|++
T Consensus 179 ~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~ 255 (341)
T PRK05396 179 AAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG---APSAFRQMLDNMNH 255 (341)
T ss_pred HHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC---CHHHHHHHHHHHhc
Confidence 6788888898 688888888887776653111001000 11 122 13567788899999
Q ss_pred CcEEEEEEe
Q 043102 465 DGLFVLQFI 473 (525)
Q Consensus 465 GG~~viq~i 473 (525)
+|+++....
T Consensus 256 ~G~~v~~g~ 264 (341)
T PRK05396 256 GGRIAMLGI 264 (341)
T ss_pred CCEEEEEec
Confidence 999988643
No 371
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=23.73 E-value=1.1e+02 Score=31.90 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCC
Q 043102 406 TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 406 a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~Lkp 464 (525)
++.+|+..|++ |+.++-++++.+.+++.-...-+..+ |. .++. ...+..+.+.|++
T Consensus 198 ~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~ 274 (363)
T cd08279 198 AIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGR---AATIRQALAMTRK 274 (363)
T ss_pred HHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCC---hHHHHHHHHHhhc
Confidence 67888888996 99999999988877532100001100 11 1121 3567888999999
Q ss_pred CcEEEEEE
Q 043102 465 DGLFVLQF 472 (525)
Q Consensus 465 GG~~viq~ 472 (525)
+|+++.-.
T Consensus 275 ~G~~v~~g 282 (363)
T cd08279 275 GGTAVVVG 282 (363)
T ss_pred CCeEEEEe
Confidence 99997643
No 372
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=23.71 E-value=1.7e+02 Score=32.51 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=34.8
Q ss_pred cHHHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEeCCCceEeCCEEEEecChH
Q 043102 73 NMMELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVCGDGSREFYNSCVMALHAP 135 (525)
Q Consensus 73 n~~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~~~g~~e~fD~VV~A~had 135 (525)
.|.+.++..|+++.......++..+. .++.|...+|....||.||+||-+.
T Consensus 272 ~l~~~l~~~gv~i~~~~~V~~I~~~~------------~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 272 NLEEHIKQYPIDLMENQRAKKIETED------------GLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHhCCeEEcCCEEEEEEecC------------CeEEEEECCCCEEEeCEEEECCCCC
Confidence 34555666788887766555554321 1356666777778999999999875
No 373
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=23.27 E-value=27 Score=27.06 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=22.5
Q ss_pred eeeeeeccCCCcc-cccccccC---ccHHHHHHHhc-cceeeeccEEE
Q 043102 51 WVRTERVFLPPLT-IRGYVVTY---PNMMELFESLG-VDMEISDMSFS 93 (525)
Q Consensus 51 ~~~~~r~f~~p~~-~~~~~~tf---Pn~~~~~~~~g-v~~~~~~~~~~ 93 (525)
.++|||+++|-+. -.--.-|. -.+..-|+.|- |++...-+.|+
T Consensus 2 ~V~Ler~YlDGevseE~~~Eti~s~ed~w~~Y~~WqLv~q~~~~ivFr 49 (51)
T PF08977_consen 2 TVILERVYLDGEVSEEIKEETIWSMEDFWAKYKGWQLVDQDDDQIVFR 49 (51)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEEEHHHHHHHSTTSEEEEEETTEEEEE
T ss_pred EEEEEEEEecCceeEEEEEeeeccHHHHHHhhcCcEEEEccCCEEEEE
Confidence 4899999998721 11112333 33444456664 66655555553
No 374
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=23.24 E-value=1.3e+02 Score=31.31 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=40.8
Q ss_pred HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCC----CC-----------------Cc---ccCcccHHHHHHHHHh
Q 043102 406 TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLE----RN-----------------DR---SFGHEYMEEFFGCCES 460 (525)
Q Consensus 406 a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~----d~-----------------D~---~vg~~~~~~~f~~i~r 460 (525)
++.+|+..|++ |+.++-|+++.+.+++. |.. .+ |. .++.. ...+.+.+
T Consensus 203 ~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~---~~~~~~~~ 275 (367)
T cd08263 203 AIQLAKAFGASPIIAVDVRDEKLAKAKEL----GATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKP---ETFKLALD 275 (367)
T ss_pred HHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCH---HHHHHHHH
Confidence 67888888988 99999999988877542 221 00 11 22221 36788899
Q ss_pred ccCCCcEEEEE
Q 043102 461 LIAKDGLFVLQ 471 (525)
Q Consensus 461 ~LkpGG~~viq 471 (525)
.|+++|+++.-
T Consensus 276 ~l~~~G~~v~~ 286 (367)
T cd08263 276 VVRDGGRAVVV 286 (367)
T ss_pred HHhcCCEEEEE
Confidence 99999998764
No 375
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=23.23 E-value=48 Score=24.17 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.1
Q ss_pred CCCCeEEeccCCCCCC
Q 043102 236 GRRGIWFRGAYQGYGF 251 (525)
Q Consensus 236 G~~~~~fcGay~g~Gf 251 (525)
+--+++|.|+|.|.|-
T Consensus 22 ~~vgiFfyGsY~GlGS 37 (39)
T PRK02565 22 FVVGLFFYGSYAGLGS 37 (39)
T ss_pred hheeeEEeecccccCC
Confidence 4568999999998773
No 376
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=22.86 E-value=1.2e+02 Score=32.57 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCcccHHHHHHHHHhccCC
Q 043102 406 TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEYMEEFFGCCESLIAK 464 (525)
Q Consensus 406 a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~~~~~f~~i~r~Lkp 464 (525)
++.-|+..|+ ++.+||+.++-+++|++.=+-.-+..+ |. .+|. .+.++.....+.+
T Consensus 201 aI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~---~~~~~~al~~~~~ 277 (366)
T COG1062 201 AIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN---VEVMRQALEATHR 277 (366)
T ss_pred HHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC---HHHHHHHHHHHhc
Confidence 7777877786 999999999999999876332222211 22 2332 2467777778888
Q ss_pred CcEEEEEE
Q 043102 465 DGLFVLQF 472 (525)
Q Consensus 465 GG~~viq~ 472 (525)
+|..++--
T Consensus 278 ~G~~v~iG 285 (366)
T COG1062 278 GGTSVIIG 285 (366)
T ss_pred CCeEEEEe
Confidence 99998743
No 377
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=22.68 E-value=1.1e+02 Score=33.62 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=23.8
Q ss_pred eeeCccCCcccEEEEeCCCceEe--CCEEEEecCh
Q 043102 102 CEWGSRNGLSSCTVVCGDGSREF--YNSCVMALHA 134 (525)
Q Consensus 102 ~e~~s~~~~~gv~v~~~~g~~e~--fD~VV~A~ha 134 (525)
++|.++.+ .+.|++.+|.... +|.||+||=.
T Consensus 110 ~~~~~~~~--~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 110 ADWDEDTK--RWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred EEecCCCC--eEEEEEcCCCeeeEecCEEEEeecC
Confidence 57777553 6899988886654 9999999865
No 378
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.47 E-value=1.8e+02 Score=31.13 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHhccceeeeccEEEEEecCCCceeeCccCCcccEEEEe-CCCceEe--CCEEEEecCh
Q 043102 75 MELFESLGVDMEISDMSFSLSLDKGQGCEWGSRNGLSSCTVVC-GDGSREF--YNSCVMALHA 134 (525)
Q Consensus 75 ~~~~~~~gv~~~~~~~~~~v~~~~~~~~e~~s~~~~~gv~v~~-~~g~~e~--fD~VV~A~ha 134 (525)
.+.++..|+++...+.+++|..++ +.|.+.. .+|.... ||++|+||=+
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~------------~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKN------------KTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCC------------CEEEEEECCCCCEEEecCCEEEECCCC
Confidence 466778899988877777775521 1355543 2344455 9999999876
No 379
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=22.29 E-value=3.4e+02 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccCCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq 471 (525)
+..||+.+..+|+++|.+.|.
T Consensus 104 l~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 104 LRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 578999999999999999873
No 380
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.10 E-value=4.3e+02 Score=28.30 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHhcCCEEEEEcC-------ChHHHHHHHHHHHHcCCCCC
Q 043102 406 TIEVVKRTGCKYTGITL-------AEKQLKYAGIKVKEADLERN 442 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdl-------S~eql~~Ar~r~~~~gl~d~ 442 (525)
+.+++++.|.+|+|+++ |++.++.|++.+++.|++..
T Consensus 21 aa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~ 64 (360)
T PRK14665 21 AAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHI 64 (360)
T ss_pred HHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEE
Confidence 55666667999999987 35668889999998887433
No 381
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=21.89 E-value=1.2e+02 Score=30.92 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=44.5
Q ss_pred Ceehhhc-------HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCCC----------------CcccCcccHHHH
Q 043102 399 REVIFLG-------TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLERN----------------DRSFGHEYMEEF 454 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d~----------------D~~vg~~~~~~~ 454 (525)
.+||-.| ++.+|+..|++ |+.++-|+++.+.+++.-...-+..+ |..+....-...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~ 240 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPAT 240 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCHHH
Confidence 3566655 67888888997 99999999888776532100000000 111100001356
Q ss_pred HHHHHhccCCCcEEEEE
Q 043102 455 FGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 455 f~~i~r~LkpGG~~viq 471 (525)
+..+.++|+++|+++.-
T Consensus 241 ~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 241 IEQALALARPGGKVVLV 257 (343)
T ss_pred HHHHHHHhhcCCEEEEE
Confidence 78889999999998754
No 382
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=21.86 E-value=1.5e+02 Score=31.34 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=50.8
Q ss_pred Ceehhhc------HHHHHHhcC-CEEEEEcCChHHHHHHHHHHHH--cCCCCC-------Cc------------------
Q 043102 399 REVIFLG------TIEVVKRTG-CKYTGITLAEKQLKYAGIKVKE--ADLERN-------DR------------------ 444 (525)
Q Consensus 399 ~rVLDIG------a~~lA~~~G-~~VtGIdlS~eql~~Ar~r~~~--~gl~d~-------D~------------------ 444 (525)
.+||=|| ..+.+++.- -.++=+++.+.-++..++-..+ .|.++. |.
T Consensus 123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~d 202 (337)
T KOG1562|consen 123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITD 202 (337)
T ss_pred CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEe
Confidence 3888888 445555421 2666777777777777776654 344443 22
Q ss_pred ---ccC---cccHHHHHHHHHhccCCCcEEEEEEe
Q 043102 445 ---SFG---HEYMEEFFGCCESLIAKDGLFVLQFI 473 (525)
Q Consensus 445 ---~vg---~~~~~~~f~~i~r~LkpGG~~viq~i 473 (525)
-+| ..+.+.||+.+.+.||+||+.++|.=
T Consensus 203 ssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 203 SSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 233 24678999999999999999999863
No 383
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=21.54 E-value=1e+02 Score=29.56 Aligned_cols=54 Identities=13% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCCcEEEEEEecCCCcchhcccCchhHHhhcccCCCCCCCHHHHHHHHHhcCCcEEE
Q 043102 452 EEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCLPSLSRITSAMSAASRLWYN 519 (525)
Q Consensus 452 ~~~f~~i~r~LkpGG~~viq~i~~~~~~~~~~~~~~~fi~kYIFPGg~LPsl~~i~~~~~~a~gl~V~ 519 (525)
..+++.+++.|.|||++++.-+.- ..+...+++ |.-|..+.+-..+.++ ||+..
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D--------~eT~~~L~~-----G~pp~~TrLG~~Ll~~-GFtwf 119 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVED--------RETRRQLQR-----GVPPAETRLGFSLLKA-GFTWF 119 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT---------HHHHHHHHT-----T--GGGSHHHHHHHTT-T--EE
T ss_pred HHHHHHHHHHhhhcCeEEEEEecC--------HHHHHHHHc-----CCCcccchhHHHHHhC-CcEEE
Confidence 578999999999999999864421 223444554 5566777888788885 77654
No 384
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=21.30 E-value=1.4e+02 Score=32.54 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=32.7
Q ss_pred ccEEEEeCCCceEeCCEEEEecChHHHHHhhcCCCCHHHHhhccCCceeEeccCCCCCCC
Q 043102 111 SSCTVVCGDGSREFYNSCVMALHAPDALKILGNQATFDETRTGGAFHDIFLHCDKNSMPQ 170 (525)
Q Consensus 111 ~gv~v~~~~g~~e~fD~VV~A~hadqAL~lL~~~~t~~E~~iLg~f~~~vlHtD~s~mP~ 170 (525)
++..|.+.+|.+...|.+|+||=.-. .-=|+ +|..=.+++..|-..|+-.=|++.|=
T Consensus 142 ~~f~l~t~~g~~i~~d~lilAtGG~S-~P~lG--stg~gy~iA~~~G~~I~~~rpalvpf 198 (408)
T COG2081 142 SGFRLDTSSGETVKCDSLILATGGKS-WPKLG--STGFGYPIARQFGHTITPLRPALVPF 198 (408)
T ss_pred ceEEEEcCCCCEEEccEEEEecCCcC-CCCCC--CCchhhHHHHHcCCccccCccccCCc
Confidence 36788888887789999999975321 11112 34444455555554444444444443
No 385
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=21.28 E-value=2.7e+02 Score=28.16 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=40.0
Q ss_pred HHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCC-----------CCc---ccCcccHHHHHHHHHhccCCCcEEEEE
Q 043102 406 TIEVVKRTGCKYTGITLAEKQLKYAGIKVKEADLER-----------NDR---SFGHEYMEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 406 a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~~gl~d-----------~D~---~vg~~~~~~~f~~i~r~LkpGG~~viq 471 (525)
+..+++ .|.+|+++|.+++.++.+.++ |..+ .|. .+......++++++...++++- ++++
T Consensus 16 a~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~-ii~d 89 (279)
T PRK07417 16 GLDLRS-LGHTVYGVSRRESTCERAIER----GLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPALPPEA-IVTD 89 (279)
T ss_pred HHHHHH-CCCEEEEEECCHHHHHHHHHC----CCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCc-EEEe
Confidence 445555 489999999999888777654 2111 133 5556667778888988888764 4343
No 386
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=21.25 E-value=1.5e+02 Score=30.25 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=44.0
Q ss_pred Ceehhhc-------HHHHHHhcCC-EEEEEcCChHHHHHHHHHHHHcCCCCC-----------------Cc---ccCccc
Q 043102 399 REVIFLG-------TIEVVKRTGC-KYTGITLAEKQLKYAGIKVKEADLERN-----------------DR---SFGHEY 450 (525)
Q Consensus 399 ~rVLDIG-------a~~lA~~~G~-~VtGIdlS~eql~~Ar~r~~~~gl~d~-----------------D~---~vg~~~ 450 (525)
.+||-.| ++.+|+..|+ +|+.++.+++..+.+++.-...-+..+ |. .+|.
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~-- 246 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGF-- 246 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCC--
Confidence 4666655 6788888896 899998888777766643100000000 11 1221
Q ss_pred HHHHHHHHHhccCCCcEEEEE
Q 043102 451 MEEFFGCCESLIAKDGLFVLQ 471 (525)
Q Consensus 451 ~~~~f~~i~r~LkpGG~~viq 471 (525)
...++++.+.|+++|+++.-
T Consensus 247 -~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 247 -EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred -HHHHHHHHHHhhcCCEEEEE
Confidence 25788889999999998754
No 387
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=20.99 E-value=1.6e+02 Score=29.24 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHhcCCE-EEEEcCChHHHHHHHHHHHHcCCCC----C-----------------CcccCcccHHHHHHHHHhccC
Q 043102 406 TIEVVKRTGCK-YTGITLAEKQLKYAGIKVKEADLER----N-----------------DRSFGHEYMEEFFGCCESLIA 463 (525)
Q Consensus 406 a~~lA~~~G~~-VtGIdlS~eql~~Ar~r~~~~gl~d----~-----------------D~~vg~~~~~~~f~~i~r~Lk 463 (525)
++.+|+..|++ |+.++-+++..+.+++ .|+.. + |..+....-......+.+.|+
T Consensus 145 ~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~ 220 (312)
T cd08269 145 FLQLAAAAGARRVIAIDRRPARLALARE----LGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVA 220 (312)
T ss_pred HHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhc
Confidence 77888888999 9999888887775543 23210 0 111111111346778889999
Q ss_pred CCcEEEEEE
Q 043102 464 KDGLFVLQF 472 (525)
Q Consensus 464 pGG~~viq~ 472 (525)
++|+++...
T Consensus 221 ~~g~~~~~g 229 (312)
T cd08269 221 ERGRLVIFG 229 (312)
T ss_pred cCCEEEEEc
Confidence 999998653
No 388
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.77 E-value=3.1e+02 Score=32.07 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=53.3
Q ss_pred eehhhc--------HHHHHHhcCCEEEEEcCChHHHHHHHHHHHH-------cC-CCCC-------------------Cc
Q 043102 400 EVIFLG--------TIEVVKRTGCKYTGITLAEKQLKYAGIKVKE-------AD-LERN-------------------DR 444 (525)
Q Consensus 400 rVLDIG--------a~~lA~~~G~~VtGIdlS~eql~~Ar~r~~~-------~g-l~d~-------------------D~ 444 (525)
+|.=|| |..+|...|+.|+-+|.|+++++.+++++++ .| +... |+
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 390 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHA 390 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccC
Confidence 565566 6666644699999999999999999887643 12 1110 11
Q ss_pred -----ccC--cccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 -----SFG--HEYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 -----~vg--~~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
+|. .+-..+.|+++.+.++|+..+.-.+.+.+
T Consensus 391 DlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 391 DVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred CEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 221 22346899999999999999987665554
No 389
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=20.32 E-value=77 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=27.6
Q ss_pred hcCCCCeEEec-cCC--CCCCchhhhchHHHHHhhh
Q 043102 234 IQGRRGIWFRG-AYQ--GYGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 234 iqG~~~~~fcG-ay~--g~GfHEdg~~Sgl~aA~~l 266 (525)
.++.++|+|+| =+. .-|+-|+|+.||.+||.++
T Consensus 408 ~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei 443 (450)
T COG1231 408 PAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEI 443 (450)
T ss_pred cCCCCceEEeeecccccccchhHHHHHHHHHHHHHH
Confidence 35789999999 333 3589999999999999987
No 390
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=20.23 E-value=4.1e+02 Score=29.43 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCeehhhc------HHHHHHh--cCCEEEEEcCChHHHHHHHHHHHHcCCCCC------------------------Cc-
Q 043102 398 VREVIFLG------TIEVVKR--TGCKYTGITLAEKQLKYAGIKVKEADLERN------------------------DR- 444 (525)
Q Consensus 398 ~~rVLDIG------a~~lA~~--~G~~VtGIdlS~eql~~Ar~r~~~~gl~d~------------------------D~- 444 (525)
++||||.. +.++|.- --..|.+.|.+++-+...++.+...|+... |+
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAP 321 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAP 321 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeecCC
Confidence 34999998 4444432 246899999999999999999999886432 33
Q ss_pred --c--cCc------------------ccHHHHHHHHHhccCCCcEEEEEEecCC
Q 043102 445 --S--FGH------------------EYMEEFFGCCESLIAKDGLFVLQFISIP 476 (525)
Q Consensus 445 --~--vg~------------------~~~~~~f~~i~r~LkpGG~~viq~i~~~ 476 (525)
. |+- .-..+.|-....++|+||+++-.+-++.
T Consensus 322 CSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 322 CSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred CCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 1 210 1134567788899999999998766554
No 391
>CHL00108 psbJ photosystem II protein J
Probab=20.02 E-value=61 Score=23.77 Aligned_cols=16 Identities=50% Similarity=0.993 Sum_probs=12.9
Q ss_pred CCCCeEEeccCCCCCC
Q 043102 236 GRRGIWFRGAYQGYGF 251 (525)
Q Consensus 236 G~~~~~fcGay~g~Gf 251 (525)
|--+++|.|+|.|.|.
T Consensus 23 ~~vgiFfyGsY~GlGS 38 (40)
T CHL00108 23 GLLGIFFYGSYSGLGS 38 (40)
T ss_pred heeeeEEeecccccCC
Confidence 4568999999998773
No 392
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=20.00 E-value=1.2e+02 Score=33.58 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=37.2
Q ss_pred cCCCCCHHHHHHHHHhhh-hcCC--CCeEEeccCCCCCCchhhhchHHHHHhhh
Q 043102 216 GPPVPFVAASKASLELGH-IQGR--RGIWFRGAYQGYGFHEDGLKDLSINSCMT 266 (525)
Q Consensus 216 ~HPv~~~~a~~aq~~l~~-iqG~--~~~~fcGay~g~GfHEdg~~Sgl~aA~~l 266 (525)
--|+|++.--.-++.++. ||-. .++.+||+|..-=-.-|++.||..+|..+
T Consensus 436 ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v 489 (491)
T KOG1276|consen 436 CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEV 489 (491)
T ss_pred cccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhh
Confidence 447888876665555544 5544 48999999987666778888888888765
Done!