BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043104
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/499 (45%), Positives = 319/499 (63%), Gaps = 21/499 (4%)
Query: 42 FLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAH 101
FL CLT+ + +++ +YASV + +RN +F T+KP IITP +H
Sbjct: 13 FLTCLTKDIPPRQ------LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASH 66
Query: 102 VSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRP--FFILDMFNLRSIDVDVKDESAWVE 159
+ AAV+C ++ G ++++RSGGHDYEGLSY S++P F ++DM +R++ +D K +AWV+
Sbjct: 67 IQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVD 126
Query: 160 AGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIV 219
+GA LG+LYY I + S G+PAGVC T+ +LRK+G + DNV+DAK+V
Sbjct: 127 SGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVV 186
Query: 220 DVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATD 279
D +GR+LDRKAMGED FWAIRGGGG SFG+V ++++KL+PVP VTVF+ + + E A D
Sbjct: 187 DAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAID 246
Query: 280 VVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELG 339
+V KWQ VAPA D+L +R++ A ALYLG LV L+ FPELG
Sbjct: 247 LVTKWQTVAPALPDDLMIRIMAM--------GQGAMFEALYLGTCKDLVLLMTARFPELG 298
Query: 340 LKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLL 399
+ + EM+WI+SV + GT + LL+R N F K KSDYV +PIPK +
Sbjct: 299 MNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPIPKSDWEKI 357
Query: 400 WKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLS 459
+ +++ G ++ +PYGG +A +P S T FP R+G LF IQY + W G + +
Sbjct: 358 FTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWT 417
Query: 460 QATSLYSFMTPFVSKSPRSAYLNYRDVDIGINH--HGEDSYAEGKVYGEKYFNGNFDRLV 517
+ +Y FMTP+VSK+PR AY+NYRD+D+G+N +YA GKV+GEKYF GNF+RL
Sbjct: 418 R--DIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLA 475
Query: 518 KVKTMVDPENFFRNEQSIP 536
+ K +DPE++FRNEQSIP
Sbjct: 476 RTKGKIDPEDYFRNEQSIP 494
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/515 (43%), Positives = 328/515 (63%), Gaps = 20/515 (3%)
Query: 40 ESFLQCLTQQTNSSDQQISN--IVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPL 97
E+FL+C ++ ++N +V TQ + Y S+L + I+N RF +T KP VI+TP
Sbjct: 5 ENFLKCFSKHI---PNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61
Query: 98 QEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAW 157
+H+ A ++CSK+VG Q++ RSGGHD EG+SYIS PF ++D+ N+ SI +DV ++AW
Sbjct: 62 NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121
Query: 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAK 217
VEAGATLGE+YY I +K++ +P G CPTV ++R +GL+ DN++DA
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 218 IVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-EN 276
+V+V G++LDRK+MGEDLFWAIRGGGG +FG++ A+KIKLV VP T+F ++ +
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 277 ATDVVYKWQLVAPATDDNLFM--RMLLQPVTRNK---KPTVRASIVALYLGGADSLVTLL 331
+ KWQ +A D +L + + + +T N K TV +++ GG DSLV L+
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 332 AKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPN----VLLDRDLNSADFLKRKSDYV 387
K FPELG+KK + E SWI + ++++ N + N +LLDR K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 388 QKPIPKYSLNLLWKQMME--LGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSIS 445
+KPIP+ ++ + +++ E +G V PYGG M EI S FPHRAG ++++ Y+ S
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 446 WSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIG-INHHGEDSYAEGKVY 504
W E E ++ S+Y+F TP+VS++PR AYLNYRD+D+G NH ++Y + +++
Sbjct: 422 WEK--QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 479
Query: 505 GEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQP 539
GEKYF NF+RLVKVKT VDP NFFRNEQSIP P
Sbjct: 480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/509 (42%), Positives = 323/509 (63%), Gaps = 29/509 (5%)
Query: 37 SAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITP 96
+A E FL CL ++ ++ +++ +Y SVL IRN+R++ +KP IITP
Sbjct: 6 AAKEDFLGCLVKEIPP------RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITP 59
Query: 97 LQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRP--FFILDMFNLRSIDVDVKDE 154
Q +H+ +AV+C ++ ++++RSGGHDYEGLSY S +P F ++D+ +R++ VD K
Sbjct: 60 TQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKAR 119
Query: 155 SAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVV 214
+AWV++GA LGELYY I++ S +PAGVCPT+ +LRK+G++ +NV+
Sbjct: 120 TAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVI 179
Query: 215 DAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA 274
D K+VD G++ D+K+MG+D FWA+RGGGG SFG+V+A+++KL+PVP TVT+F+ + ++
Sbjct: 180 DVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVS 239
Query: 275 ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKD 334
E A D++ KWQ+VAP +L +R++ Q +A+ A+YLG +L L++
Sbjct: 240 EGAVDIINKWQVVAPQLPADLMIRIIAQ--------GPKATFEAMYLGTCKTLTPLMSSK 291
Query: 335 FPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKY 394
FPELG+ + EMSWIQS+ + + LL+R + F + KSDYV +P PK
Sbjct: 292 FPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPK- 350
Query: 395 SLNLLWKQMME--LGKIG---LVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDP 449
+W+Q++ L K G ++F+PYG ++ P S T FPHR G LF IQY W P
Sbjct: 351 ---TVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAP 407
Query: 450 GTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGED--SYAEGKVYGEK 507
G LS + +Y++M P+VSK+PR AY NYRD+D+G N D +YA GKV+G+K
Sbjct: 408 GAAAAP--LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQK 465
Query: 508 YFNGNFDRLVKVKTMVDPENFFRNEQSIP 536
YF GNF+RL K VDP ++FRNEQSIP
Sbjct: 466 YFKGNFERLAITKGKVDPTDYFRNEQSIP 494
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/515 (37%), Positives = 291/515 (56%), Gaps = 24/515 (4%)
Query: 38 AYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPL 97
A L CLT + S ++S + L I+N F S KP+ II P
Sbjct: 23 AGNDLLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 78
Query: 98 QEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAW 157
+ +S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AW
Sbjct: 79 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAW 138
Query: 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAK 217
VE+G+TLGELYY I + S G+ AG CPTV M RK+GL+ DNVVDA
Sbjct: 139 VESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAI 198
Query: 218 IVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-EN 276
++D G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A +
Sbjct: 199 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 258
Query: 277 ATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAK 333
AT +++KWQ VA +++ + +L + V +++ + G A S LL
Sbjct: 259 ATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL-- 312
Query: 334 DFPELGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIP 392
FPELGL +E+ +EMSW +S + A + + N L D + K K D ++P+P
Sbjct: 313 -FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLP 368
Query: 393 KYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTE 452
+ L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ +
Sbjct: 369 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 428
Query: 453 IEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEK 507
+ + L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE
Sbjct: 429 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGES 488
Query: 508 YFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSD 542
YF N++RL++ KT++DP N F + QSIP D
Sbjct: 489 YFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFD 523
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/515 (37%), Positives = 291/515 (56%), Gaps = 24/515 (4%)
Query: 38 AYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPL 97
A L CLT + S ++S + L I+N F S KP+ II P
Sbjct: 4 AGNDLLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 59
Query: 98 QEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAW 157
+ +S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AW
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAW 119
Query: 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAK 217
VE+G+TLGELYY I + S G+ AG CPTV M RK+GL+ DNVVDA
Sbjct: 120 VESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAI 179
Query: 218 IVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-EN 276
++D G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A +
Sbjct: 180 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 239
Query: 277 ATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAK 333
AT +++KWQ VA +++ + +L + V +++ + G A S LL
Sbjct: 240 ATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL-- 293
Query: 334 DFPELGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIP 392
FPELGL +E+ +EMSW +S + A + + N L D + K K D ++P+P
Sbjct: 294 -FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLP 349
Query: 393 KYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTE 452
+ L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ +
Sbjct: 350 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 409
Query: 453 IEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEK 507
+ + L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE
Sbjct: 410 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGES 469
Query: 508 YFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSD 542
YF N++RL++ KT++DP N F + QSIP D
Sbjct: 470 YFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFD 504
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/515 (37%), Positives = 291/515 (56%), Gaps = 24/515 (4%)
Query: 38 AYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPL 97
A L CLT + S ++S + L I+N F S KP+ II P
Sbjct: 4 AGNDLLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 59
Query: 98 QEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAW 157
+ +S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AW
Sbjct: 60 SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAW 119
Query: 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAK 217
VE+G+TLGELYY I + S G+ AG CPTV M RK+GL+ DNVVDA
Sbjct: 120 VESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAI 179
Query: 218 IVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-EN 276
++D G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A +
Sbjct: 180 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 239
Query: 277 ATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAK 333
AT +++KWQ VA +++ + +L + V +++ + G A S LL
Sbjct: 240 ATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL-- 293
Query: 334 DFPELGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIP 392
FPELGL +E+ +EMSW +S + A + + N L D + K K D ++P+P
Sbjct: 294 -FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLP 349
Query: 393 KYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTE 452
+ L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ +
Sbjct: 350 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 409
Query: 453 IEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEK 507
+ + L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE
Sbjct: 410 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGES 469
Query: 508 YFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSD 542
YF N++RL++ KT++DP N F + QSIP D
Sbjct: 470 YFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFD 504
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/505 (37%), Positives = 289/505 (57%), Gaps = 24/505 (4%)
Query: 42 FLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAH 101
L CLT + S ++S + L I+N F S KP+ II P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 102 VSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAG 161
+S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AWVE+G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 162 ATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIVDV 221
+TLGELYY I + S G+ AG CPTV M RK+GL+ DNVVDA ++D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 222 RGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDV 280
G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A + AT +
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSL 237
Query: 281 VYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAKDFPE 337
++KWQ VA +++ + +L + V +++ + G A S LL FPE
Sbjct: 238 LHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL---FPE 290
Query: 338 LGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIPKYSL 396
LGL +E+ +EMSW +S + A + + N L D + K K D ++P+P +
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLPSKAF 347
Query: 397 NLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEED 456
L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ + + +
Sbjct: 348 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 407
Query: 457 RLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNG 511
L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE YF
Sbjct: 408 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 467
Query: 512 NFDRLVKVKTMVDPENFFRNEQSIP 536
N++RL++ KT++DP N F + QSIP
Sbjct: 468 NYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 188/505 (37%), Positives = 288/505 (57%), Gaps = 24/505 (4%)
Query: 42 FLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAH 101
L CLT + S ++S + L I+N F S KP+ II P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 102 VSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAG 161
+S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AWVE+G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 162 ATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIVDV 221
+TLGELYY I + S G+ AG PTV M RK+GL+ DNVVDA ++D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 222 RGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDV 280
G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A + AT +
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSL 237
Query: 281 VYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAKDFPE 337
++KWQ VA +++ + +L + V +++ + G A S LL FPE
Sbjct: 238 LHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL---FPE 290
Query: 338 LGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIPKYSL 396
LGL +E+ +EMSW +S + A + + N L D + K K D ++P+P +
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLPSKAF 347
Query: 397 NLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEED 456
L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ + + +
Sbjct: 348 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 407
Query: 457 RLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNG 511
L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE YF
Sbjct: 408 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 467
Query: 512 NFDRLVKVKTMVDPENFFRNEQSIP 536
N++RL++ KT++DP N F + QSIP
Sbjct: 468 NYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/509 (37%), Positives = 289/509 (56%), Gaps = 24/509 (4%)
Query: 38 AYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPL 97
A L CLT + S ++S + L I+N F S KP+ II P
Sbjct: 1 AGNDLLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 56
Query: 98 QEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAW 157
+ +S + C ++ + +++RSGG YEGLSY SD PF ++D+ NL + +D++ E+AW
Sbjct: 57 SKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAW 116
Query: 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAK 217
VE+G+TLGELYY I + S G+ AG CPTV M RK+GL+ DNVVDA
Sbjct: 117 VESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAI 176
Query: 218 IVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-EN 276
++D G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A +
Sbjct: 177 LIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDE 236
Query: 277 ATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAK 333
AT +++KWQ VA +++ + +L + V +++ + G A S LL
Sbjct: 237 ATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL-- 290
Query: 334 DFPELGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIP 392
FPELGL +E+ +EMSW +S + A + + N L D + K K D ++P+P
Sbjct: 291 -FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLP 346
Query: 393 KYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTE 452
+ L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ +
Sbjct: 347 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 406
Query: 453 IEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEK 507
+ + L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE
Sbjct: 407 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGES 466
Query: 508 YFNGNFDRLVKVKTMVDPENFFRNEQSIP 536
YF N++RL++ KT++DP N F + QSIP
Sbjct: 467 YFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 188/505 (37%), Positives = 288/505 (57%), Gaps = 24/505 (4%)
Query: 42 FLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAH 101
L CLT + S ++S + L I+N F S KP+ II P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 102 VSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAG 161
+S + C ++ + +++RSGGH YEGLSY SD PF ++D+ NL + +D++ E+AWVE+G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 162 ATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIVDV 221
+TLGELYY I + S G+ AG PTV M RK+GL+ DNVVDA ++D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 222 RGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDV 280
G ILDR+AMGED+FWAIRGGGG +G + A+KIKL+PVPE VTVFR + +A + AT +
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSL 237
Query: 281 VYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLG---GADSLVTLLAKDFPE 337
++KWQ VA +++ + +L + V +++ + G A S LL FPE
Sbjct: 238 LHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLL---FPE 290
Query: 338 LGLKKENVMEMSWIQSVLWWANFDNGTS-PNVLLDRDLNSADFLKRKSDYVQKPIPKYSL 396
LGL +E+ +EMSW +S + A + + N L D + K K D ++P+P +
Sbjct: 291 LGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVDLTKEPLPSKAF 347
Query: 397 NLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEED 456
L +++ + + N +GG+M++I + T FPHR+G ++Y ++W+ + + +
Sbjct: 348 YGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTE 407
Query: 457 RLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNG 511
L +Y FM PFVSK+PR Y+N+ D+D+G G + + +GE YF
Sbjct: 408 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLS 467
Query: 512 NFDRLVKVKTMVDPENFFRNEQSIP 536
N++RL++ KT++DP N F + QSIP
Sbjct: 468 NYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 206/497 (41%), Gaps = 70/497 (14%)
Query: 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFF--IL 139
FN +P V+ V AV + G ++ +RSGGH +EG D P ++
Sbjct: 48 FNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFV---DDPAVRAVI 104
Query: 140 DMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXX 199
DM +R + D + VE GATLGE Y ++ + PAGVCP V
Sbjct: 105 DMSQMRQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGY 163
Query: 200 XNMLRKFGLSTDNV--VDAKIVDVRGRILDRKAMG--------EDLFWAIRGGGGASFGV 249
+ R+ G+ D++ V+ +VD GR RK + +L+WA GGGG +FG+
Sbjct: 164 GPLSRRDGVVADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWAHTGGGGGNFGI 221
Query: 250 VLAYKIKLVPVPETVTVFRAERLLAENATD-----VVYKWQLVAPATDDNLFMRML---- 300
V Y + T +LL + T V + W A + F R++
Sbjct: 222 VTRYWFRT----PGATGTDPSQLLPKAPTSTLRHIVTWDWS----ALTEEAFTRIIDNHG 273
Query: 301 LQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANF 360
+ + T AS+ +++ + + +L + GL + ++ +V N
Sbjct: 274 AWHQSNSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAV----NE 329
Query: 361 DNGTSPNV-----------LLDR-DLNSADFLKRKSDYVQKPIPKYSLNLLWKQMME--- 405
G P V L ++ D D K K Y++KP L++ +
Sbjct: 330 GTGVEPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQ 389
Query: 406 -LGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSL 464
G++ L YGGK+ +P + TA R ++ K+ S +W DP ++ L+ +
Sbjct: 390 VWGEVSLY--SYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAH--DDANLAWIREI 444
Query: 465 YS--FMT----PFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVK 518
Y F T P ++NY DVD+ ++ S G + Y+ GN+ RL K
Sbjct: 445 YREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQK 500
Query: 519 VKTMVDPENFFRNEQSI 535
VK DP + FR+ S+
Sbjct: 501 VKARWDPRDVFRHALSV 517
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 191/479 (39%), Gaps = 63/479 (13%)
Query: 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDM 141
FN+ PT I AH+ +AV C+K++ ++ +SGGH Y + + ++ +
Sbjct: 29 FNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQL 88
Query: 142 FNLRSIDV---DVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXX 198
R IDV + K A VE GA LG L + K G CP V
Sbjct: 89 --DRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGG 145
Query: 199 XXNMLRKFGLSTDNVVDAKIVDVRGRILDRKAM-GEDLFWAIRGGGGASFGVVLAYKIKL 257
GL+ D+VV +V GRI++ A DLFW I+ G G++FG+V +K+
Sbjct: 146 FGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLAT 204
Query: 258 VPVPETVTVF--------RAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKK 309
P P+ +T F + L A + +W VAP + R+
Sbjct: 205 FPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARW--VAPR---EVNFRI-------GDY 252
Query: 310 PTVRASIVALYLGGADSLVTLLAK--DFPELGLKKENVMEMSWIQSVLWWANFD--NGTS 365
I LY G + D G ++WI+SVL ++NFD + +
Sbjct: 253 GAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFIT 312
Query: 366 PNVLLDRDLNSADFLKRKSDYVQKPIPKY------SLNLLWKQMMELGKIGLVFNPYGGK 419
P + + S K D V+ + Y + W +++ +GGK
Sbjct: 313 PQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDV---------HGGK 363
Query: 420 MAEIPA---SETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSP 476
+++ +ETA+PHR L+ IQ+ + D E + +T + KS
Sbjct: 364 NSQVTKVTNAETAYPHR-DKLWLIQFYDRY-DNNQTYPETSFKFLDGWVNSVTKALPKSD 421
Query: 477 RSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSI 535
Y+NY D + + YA YGE N RL K+K DP + F Q++
Sbjct: 422 WGMYINYADPRM------DRDYATKVYYGE-----NLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 129/501 (25%), Positives = 201/501 (40%), Gaps = 90/501 (17%)
Query: 98 QEAHVSAAVICSKQV-------GFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVD 150
+E H+ + +QV G ++ +RSGGH YE SD ++DM L ++ D
Sbjct: 60 EEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVVMDMSRLSAVGFD 118
Query: 151 VKDESAWVEAGATLGELY---YRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFG 207
+ + VEAGATLG +Y +R+W + P G CP V + R G
Sbjct: 119 EERGAFAVEAGATLGAVYKTLFRVWGVT----LPGGACPDVGAGGHILGGGYGPLSRMHG 174
Query: 208 LSTD--NVVDAKIVDVRGRILDRKAMGE------DLFWAIRGGGGASFGVVLAYKIKLVP 259
D + V+ +VD G A E DL+WA GGGG +FGVV+ Y ++
Sbjct: 175 SIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTA- 233
Query: 260 VPETVTVFRAERLLAENATDV-----VYKWQLVAPATDDNLFMRML-------------- 300
E RLL +V V+ W+ D+ F R++
Sbjct: 234 --EADVPPEPGRLLPRPPAEVLLNTTVWPWE----GLDEAAFARLVRNHGRWFEQNSGPD 287
Query: 301 --------LQPVTRNKKPTVRASIVALYLGGADS---LVTLLAKDFPELGLKKE-NVMEM 348
+ +TR++ + A L G D+ L T LA +G++ + +
Sbjct: 288 SPWCDLYSVLALTRSQSGAL-AMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRL 346
Query: 349 SWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMEL-- 406
W+ S W P + D D+ K K+ Y ++ + L+ ++
Sbjct: 347 PWLHSTRW---------PGIAGDGDMTGR--AKIKAAYARRSFDDRQIGTLYTRLTSTDY 395
Query: 407 ----GKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDR----L 458
G + L+ YGGK+ +PA TA R ++ KI Y +W DP + R L
Sbjct: 396 DNPAGVVALIA--YGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPVHVRWIREL 452
Query: 459 SQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVK 518
+ + P + AY+NY DVD+ E+ G + E Y+ + RL
Sbjct: 453 YRDVYADTGGVPVPGGAADGAYVNYPDVDLA----DEEWNTSGVPWSELYYKDAYPRLQA 508
Query: 519 VKTMVDPENFFRNEQSIPTQP 539
VK DP N FR+ S+ P
Sbjct: 509 VKARWDPRNVFRHALSVRVPP 529
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 210/506 (41%), Gaps = 84/506 (16%)
Query: 79 NARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRP--F 136
N+RFN +P I V+ AV + + G ++ +RSGGH +E D P
Sbjct: 51 NSRFNG----EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFV---DNPDVK 103
Query: 137 FILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXX 196
I+DM L I D + +E G TL E+Y +++ + P GVC V
Sbjct: 104 VIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEKLYLGWNV-TIPGGVCGGVGVGGHICG 162
Query: 197 XXXXNMLRKFGLSTDNVVDAKIVDV----RGRIL----DRKAMGEDLFWAIRGGGGASFG 248
+ R+FG D + ++V V + R++ +R DL+WA GGGG +FG
Sbjct: 163 GGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFG 222
Query: 249 VVLAYKIKLVPVPETVTVFRAERLLAEN-----ATDVVYKWQLVAPATDDNLFMRMLLQP 303
VV Y ++ VPE V ERLL + + V + W + A L +R +
Sbjct: 223 VVTKYWMR---VPEDVG-RNPERLLPKPPATLLTSTVTFDWAGMTEAAFSRL-LRNHGEW 277
Query: 304 VTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELG-----------LKKENVMEM--SW 350
RN P + Y G L ++ + P +G + + + +
Sbjct: 278 YERNSGPD------SPYTGLWSQL--MIGNEVPGMGESGFMMPIQVDATRPDARRLLDAH 329
Query: 351 IQSVLWWANFDNGTSPNVLLDRDLNS-------ADFLKRKSDYVQKPIPKYSLNLLWKQM 403
I++V+ P + R L S K K+ Y++K + + +++ M
Sbjct: 330 IEAVI--DGVPPAEVPEPIEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENM 387
Query: 404 MEL-----GKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRL 458
+ G + L+ YGGK+ + + TA P R + K+ Y W++PG E + L
Sbjct: 388 THMDGIDYGAVWLIG--YGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEAKH--L 442
Query: 459 SQATSLYSFM------TPFVSKSPRSAYLNYRDVDI---GINHHGEDSYAEGKVYGEKYF 509
+ LY+ + P + AY+NY D D+ G+N G + + Y+
Sbjct: 443 TWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLN-------TSGVPWHDLYY 495
Query: 510 NGNFDRLVKVKTMVDPENFFRNEQSI 535
GN RL KVK DP N F + SI
Sbjct: 496 KGNHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 131/513 (25%), Positives = 202/513 (39%), Gaps = 97/513 (18%)
Query: 79 NARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGH---DYEGLSYISDRP 135
N RF ++P P V A++ + G + RSGGH D+ G + R
Sbjct: 28 NHRF----VVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVG----TPRR 79
Query: 136 FFILDMFNLRSIDVDVKDESAWVEAGATLGEL---YYRIWQKSKLHGYPAGVCPTVXXXX 192
+LD+ NL +I V +GAT+ ++ +R W + P G C V
Sbjct: 80 DLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNAA----LPLGACSAVGMGG 135
Query: 193 XXXXXXXXNMLRKFGLSTDNV--VDAKIVD-------VRGRILDRKAMGEDLFWAIRGGG 243
+ R+ GL D++ V+ +VD V R D +GE LFWA GGG
Sbjct: 136 LVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGG 194
Query: 244 GASFGVVLAYKIKLVP--VPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLF---MR 298
G +FGVV AY+ + E V + RA L + VV+ W ++ D+ F MR
Sbjct: 195 GGNFGVVTAYEFRSPEHLATEPVGLPRAAGRL--HVQKVVFPWAMI----DETSFVTVMR 248
Query: 299 MLLQPVTRNKKP-TVRASIVALYL------GGADSLVTLLAKDFPE-------------- 337
+ R+ +P + +S+ A + G +V A PE
Sbjct: 249 RFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEG 308
Query: 338 ---LGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKY 394
+G+ + V MSW+ + + D G +V+ R + KS Y +
Sbjct: 309 TGVVGIPRGGV--MSWLTGTRYMSQADCG---DVMGARSAS-------KSAYHRAAPTDE 356
Query: 395 SLNLLWKQMM--ELGKIGLV-FNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGT 451
L++L + + G+ V FN YGG++ S+ A P R ++ K + +W D
Sbjct: 357 QLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQD--A 413
Query: 452 EIEEDRLSQATSLYS------FMTPFVSKSPRSAYLNYRDVDI---GINHHGEDSYAEGK 502
E++E L LY P Y+NY D D+ N GE
Sbjct: 414 ELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEP------ 467
Query: 503 VYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSI 535
+ Y+ N+ RL K DP N F + SI
Sbjct: 468 -WHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 180/479 (37%), Gaps = 62/479 (12%)
Query: 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDM 141
FNL P I P ++AAV C G Q+ + GGH Y + + +L++
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 142 FNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXN 201
+ + VD + A ++ GA LG + + G CP V
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGF 152
Query: 202 MLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPV 260
GL+ D ++ A +V I+ + DLFWA+RGGGG F +V ++
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEA 211
Query: 261 PETVTVFRA----ERLLAENATDVVYKW-QLVAPATDDNLFMRMLLQPVTRNKKPTVRAS 315
PE +T ++ R + W Q P L MR+ + N +
Sbjct: 212 PEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEINANALNWEGN---- 264
Query: 316 IVALYLGGADSLVTLLAKDFPELGLKK--ENVMEMSWIQSVLWWANFDNGTSPNVLLDRD 373
+ G A L +L + G K ++E W + + G N+ + D
Sbjct: 265 ----FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITYNYD 317
Query: 374 LNSADFLK-----RKSDYVQKPIPKYSLNLLWKQMMELGKIGLV-FNPYGGK---MAEIP 424
++ + R SD + Y + + G+ + ++ +GGK +A +
Sbjct: 318 VHEYFYANSLTAPRLSDEAIQAFVDYKFD---NSSVRPGRGWWIQWDFHGGKNSALAAVS 374
Query: 425 ASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVS-------KSPR 477
ETA+ HR L+ Q+ S D E + S + FM FV+ + +
Sbjct: 375 NDETAYAHR-DQLWLWQFYDSIYD----YENNTSPYPESGFEFMQGFVATIEDTLPEDRK 429
Query: 478 SAYLNYRDVDIGINHHGEDSYAEGKVYGEK-YFNGNFDRLVKVKTMVDPENFFRNEQSI 535
Y NY D + K +K Y+ GN ++L +K DPE+ F N S+
Sbjct: 430 GKYFNYADTTL------------TKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSV 476
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 201/473 (42%), Gaps = 82/473 (17%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSID 148
+P++I L V+ +V + G ++ +RSGGH+ G Y ++ +LD+ + SI
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 149 VDVKDESAWVEAGATLGELYYRIWQKSKLHGYPA--GVCPTVXXXXXXXXXXXXNMLRKF 206
+D A + G G+L +++ G A G+ P V + K+
Sbjct: 96 IDTAGSRARIGGGVISGDLV----KEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 207 GLSTDNVVDAKIVDVRGRIL----DRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPE 262
GL++DN++ A +V G ++ D + +LFWA+R G G +FGVV +++L +P
Sbjct: 152 GLASDNILGATLVTATGDVIYCSDDER---PELFWAVR-GAGPNFGVVTEVEVQLYELPR 207
Query: 263 T-----VTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIV 317
+T + LA T ++ +A D+++ + + V N+ P+V ++
Sbjct: 208 KMLAGFITWAPSVSELAGLLTSLLDALNEMA----DHIYPSVFVG-VDENRAPSV--TVC 260
Query: 318 ALYLGGADSLVTLLAKDFPEL-GLKK---ENVMEMSWIQSVLWWA---NFDNGTSPNVLL 370
+LGG D + +D L GL + +++ S+ + V A +F++G S N+ +
Sbjct: 261 VGHLGGLD----IAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMS-NLWI 315
Query: 371 DRDLN--SADFLKRKSD----YVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIP 424
DR++ +A F + + +V +P S+ L + M P+G
Sbjct: 316 DREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGM-----------PFG------- 357
Query: 425 ASETAFPHRAGNLFKIQYSISWSD--PGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLN 482
+ P R + + WS PG+E P +++ +A L
Sbjct: 358 -NPKRTPARHRDAMGVLALAEWSGAAPGSE---------------KYPELARELDAALLR 401
Query: 483 YRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSI 535
G +S ++ E Y + RL VK DPEN FR+ +I
Sbjct: 402 AGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 179/479 (37%), Gaps = 62/479 (12%)
Query: 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDM 141
FNL P I P ++AAV C G Q+ + GGH Y + + +L++
Sbjct: 35 FNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLEL 94
Query: 142 FNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXN 201
+ + VD + A ++ GA LG + + G P V
Sbjct: 95 DRMYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGF 152
Query: 202 MLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPV 260
GL+ D ++ A +V I+ + DLFWA+RGGGG F +V ++
Sbjct: 153 ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEA 211
Query: 261 PETVTVFRA----ERLLAENATDVVYKW-QLVAPATDDNLFMRMLLQPVTRNKKPTVRAS 315
PE +T ++ R + W Q P L MR+ + N +
Sbjct: 212 PEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEINANALNWEGN---- 264
Query: 316 IVALYLGGADSLVTLLAKDFPELGLKK--ENVMEMSWIQSVLWWANFDNGTSPNVLLDRD 373
+ G A L +L + G K ++E W + + G N+ + D
Sbjct: 265 ----FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITYNYD 317
Query: 374 LNSADFLK-----RKSDYVQKPIPKYSLNLLWKQMMELGKIGLV-FNPYGGK---MAEIP 424
++ + R SD + Y + + G+ + ++ +GGK +A +
Sbjct: 318 VHEYFYANSLTAPRLSDEAIQAFVDYKFD---NSSVRPGRGWWIQWDFHGGKNSALAAVS 374
Query: 425 ASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVS-------KSPR 477
ETA+ HR L+ Q+ S D E + S + FM FV+ + +
Sbjct: 375 NDETAYAHR-DQLWLWQFYDSIYD----YENNTSPYPESGFEFMQGFVATIEDTLPEDRK 429
Query: 478 SAYLNYRDVDIGINHHGEDSYAEGKVYGEK-YFNGNFDRLVKVKTMVDPENFFRNEQSI 535
Y NY D + K +K Y+ GN ++L +K DPE+ F N S+
Sbjct: 430 GKYFNYADTTL------------TKEEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSV 476
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV+A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVAAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGFLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 61
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 62 FNCNKRSIELDMK 74
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 61
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 62 FNCNKRSIELDMK 74
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 61
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 62 FNCNKRSIELDMK 74
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 61
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 62 FNCNKRSIELDMK 74
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G ++ D+P +F +
Sbjct: 2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTM 61
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 62 FNCNKRSIELDMK 74
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILDRKAM-GEDLFWAIRGGGGASFGVVLAYKIKLVPVPET 263
++G T NV + +V G ++ + +LF+++ GG G FG++ ++ L P P+
Sbjct: 183 RYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLG-QFGIITRARVLLQPAPDX 241
Query: 264 VTVFR 268
V R
Sbjct: 242 VRWIR 246
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 7/123 (5%)
Query: 148 DVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFG 207
++D + VEAGA L + + + +L G + +G
Sbjct: 110 EIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169
Query: 208 LSTDNVVDAKIVDVRGRI------LDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
L+ D + ++V GR+ L + G DL G G + G++ A +KL P P
Sbjct: 170 LARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGIITAATLKLFPKP 228
Query: 262 ETV 264
V
Sbjct: 229 RAV 231
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 89 KPTVIITPLQEAHVSAAVICSKQVGF----QLKIRSGGHDYEGLSYISDRP-----FFIL 139
KP I L HV A C++ +GF +KI G + D+P +F +
Sbjct: 3 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGQLQDKPNVDSLYFTM 62
Query: 140 DMFNLRSIDVDVK 152
N RSI++D+K
Sbjct: 63 FNCNKRSIELDMK 75
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 190 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 246
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 228
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 228
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 228
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 228
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 205 KFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVP 261
+ G NV++ ++ G ++ K + DLF A+ GG G FGV+ +I + P P
Sbjct: 172 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEPAP 228
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 81 RFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGH 123
R L++ KPT +I ++ V+A +I + +G +R+ GH
Sbjct: 43 RAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGH 85
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 81 RFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGH 123
R L++ KPT +I ++ V+A +I + +G +R+ GH
Sbjct: 41 RAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGH 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,975,687
Number of Sequences: 62578
Number of extensions: 718000
Number of successful extensions: 1486
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 55
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)