Query 043104
Match_columns 570
No_of_seqs 364 out of 2312
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.4E-38 5.3E-43 344.7 42.0 188 81-273 56-254 (525)
2 TIGR01677 pln_FAD_oxido plant- 100.0 9.6E-34 2.1E-38 312.2 34.4 204 38-265 1-216 (557)
3 TIGR01678 FAD_lactone_ox sugar 100.0 1.7E-33 3.7E-38 304.0 33.4 196 82-289 7-205 (438)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 6.3E-32 1.4E-36 291.2 29.6 172 82-263 4-178 (419)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.2E-31 2.6E-36 292.4 28.8 186 86-274 28-220 (459)
6 PLN02805 D-lactate dehydrogena 100.0 3.4E-32 7.5E-37 300.5 23.3 193 88-284 132-331 (555)
7 TIGR01676 GLDHase galactonolac 100.0 9.4E-32 2E-36 292.9 23.1 195 82-288 54-251 (541)
8 PRK11230 glycolate oxidase sub 100.0 9.8E-31 2.1E-35 287.1 23.9 197 86-284 52-254 (499)
9 KOG1231 Proteins containing th 100.0 5.7E-29 1.2E-33 257.1 23.9 179 82-263 56-241 (505)
10 PRK11282 glcE glycolate oxidas 100.0 3E-29 6.4E-34 262.7 20.7 182 98-285 3-193 (352)
11 TIGR00387 glcD glycolate oxida 100.0 3.3E-29 7.1E-34 270.1 19.8 189 93-285 1-198 (413)
12 PLN02465 L-galactono-1,4-lacto 100.0 6E-28 1.3E-32 265.2 23.5 176 81-263 88-266 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 8.7E-27 1.9E-31 213.8 12.9 136 90-227 1-137 (139)
14 KOG4730 D-arabinono-1, 4-lacto 99.9 1.1E-24 2.4E-29 225.5 18.1 209 35-270 16-227 (518)
15 PRK13905 murB UDP-N-acetylenol 99.9 7.2E-24 1.6E-28 218.9 13.4 163 87-261 28-193 (298)
16 PRK11183 D-lactate dehydrogena 99.9 4.7E-22 1E-26 214.2 18.7 194 87-286 36-291 (564)
17 PRK12436 UDP-N-acetylenolpyruv 99.8 1.5E-20 3.4E-25 194.2 13.4 162 87-260 34-197 (305)
18 TIGR00179 murB UDP-N-acetyleno 99.8 1.6E-20 3.5E-25 192.4 13.4 162 87-259 10-174 (284)
19 PRK14652 UDP-N-acetylenolpyruv 99.8 2.7E-20 5.8E-25 192.0 14.3 163 86-261 32-196 (302)
20 PRK13906 murB UDP-N-acetylenol 99.8 7.1E-20 1.5E-24 189.3 13.4 161 88-260 35-197 (307)
21 PRK13903 murB UDP-N-acetylenol 99.8 1.6E-19 3.4E-24 189.7 15.5 164 87-261 30-197 (363)
22 KOG1233 Alkyl-dihydroxyacetone 99.8 1.6E-18 3.4E-23 176.1 15.7 191 82-273 153-352 (613)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 4.7E-18 1E-22 175.0 16.4 165 87-261 18-193 (295)
24 KOG1232 Proteins containing th 99.8 1E-18 2.3E-23 177.2 11.1 186 79-266 79-271 (511)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 6.5E-16 1.4E-20 158.8 13.4 160 88-261 32-194 (297)
26 PF08031 BBE: Berberine and be 99.6 2.2E-16 4.8E-21 117.4 2.8 47 479-536 1-47 (47)
27 COG0812 MurB UDP-N-acetylmuram 99.6 6.5E-15 1.4E-19 149.0 14.0 165 86-260 17-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 1.3E-14 2.8E-19 148.9 12.6 164 87-262 30-196 (302)
29 KOG1262 FAD-binding protein DI 99.6 1E-14 2.2E-19 148.8 11.0 185 97-286 61-251 (543)
30 PRK00046 murB UDP-N-acetylenol 99.6 1.2E-14 2.6E-19 151.2 11.5 161 88-260 19-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.5 7.7E-14 1.7E-18 145.2 13.1 167 87-261 27-237 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.3 7.8E-12 1.7E-16 126.7 11.8 148 90-260 21-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.0 1.6E-09 3.5E-14 108.9 9.9 143 89-262 18-161 (257)
34 PF00941 FAD_binding_5: FAD bi 95.1 0.031 6.8E-07 53.2 4.9 77 90-170 2-80 (171)
35 PRK09799 putative oxidoreducta 94.3 0.14 3E-06 52.2 7.7 140 92-256 4-155 (258)
36 PRK09971 xanthine dehydrogenas 93.5 0.15 3.3E-06 52.8 6.4 102 92-197 6-118 (291)
37 TIGR03312 Se_sel_red_FAD proba 92.7 0.36 7.8E-06 49.1 7.6 143 93-256 4-154 (257)
38 TIGR02963 xanthine_xdhA xanthi 92.0 0.42 9E-06 52.9 7.5 104 90-197 192-303 (467)
39 TIGR03195 4hydrxCoA_B 4-hydrox 89.8 0.65 1.4E-05 48.8 6.1 100 92-196 6-116 (321)
40 TIGR03199 pucC xanthine dehydr 87.7 0.78 1.7E-05 46.8 4.9 97 96-197 1-109 (264)
41 PF09265 Cytokin-bind: Cytokin 87.4 0.26 5.6E-06 50.6 1.2 33 502-535 248-280 (281)
42 PLN00107 FAD-dependent oxidore 82.2 4.7 0.0001 40.8 7.4 23 511-533 176-198 (257)
43 PLN02906 xanthine dehydrogenas 81.1 2.4 5.1E-05 52.9 5.9 79 91-173 229-309 (1319)
44 COG4630 XdhA Xanthine dehydrog 80.1 3.6 7.7E-05 43.6 5.9 141 90-240 203-352 (493)
45 PLN00192 aldehyde oxidase 79.8 4.1 8.9E-05 51.0 7.3 83 90-173 233-316 (1344)
46 TIGR02969 mam_aldehyde_ox alde 78.2 5.2 0.00011 50.0 7.6 78 91-172 237-316 (1330)
47 PF04030 ALO: D-arabinono-1,4- 77.3 2.1 4.6E-05 43.3 3.3 22 511-532 233-254 (259)
48 PF02913 FAD-oxidase_C: FAD li 73.6 5.8 0.00012 38.9 5.3 26 506-531 219-245 (248)
49 PF03614 Flag1_repress: Repres 73.4 9.8 0.00021 35.1 6.1 117 93-227 9-134 (165)
50 COG1319 CoxM Aerobic-type carb 65.9 18 0.00039 37.4 6.9 76 90-169 3-81 (284)
51 KOG4730 D-arabinono-1, 4-lacto 59.8 4.6 9.9E-05 43.9 1.4 25 506-532 482-506 (518)
52 COG1519 KdtA 3-deoxy-D-manno-o 54.3 66 0.0014 35.0 8.9 35 88-122 259-293 (419)
53 PLN02805 D-lactate dehydrogena 47.7 38 0.00083 38.4 6.3 35 503-537 516-551 (555)
54 TIGR00387 glcD glycolate oxida 46.7 12 0.00026 40.7 2.1 28 504-531 383-411 (413)
55 PRK11230 glycolate oxidase sub 44.4 33 0.00072 38.4 5.1 30 507-536 443-473 (499)
56 PF02601 Exonuc_VII_L: Exonucl 40.5 56 0.0012 34.0 5.9 58 59-123 18-87 (319)
57 PRK11282 glcE glycolate oxidas 32.8 26 0.00056 37.4 1.9 22 510-531 323-345 (352)
58 COG0351 ThiD Hydroxymethylpyri 32.7 1.4E+02 0.0029 30.7 6.9 91 58-175 132-225 (263)
59 PRK00286 xseA exodeoxyribonucl 29.6 74 0.0016 34.8 4.9 57 59-122 139-203 (438)
60 COG4981 Enoyl reductase domain 27.4 1.5E+02 0.0032 33.5 6.4 79 41-128 112-197 (717)
61 COG1570 XseA Exonuclease VII, 25.5 94 0.002 34.1 4.6 57 59-122 139-204 (440)
62 COG4359 Uncharacterized conser 23.9 81 0.0018 30.6 3.3 25 102-126 78-102 (220)
63 cd02875 GH18_chitobiase Chitob 20.7 1.6E+02 0.0034 31.5 5.1 67 36-120 18-84 (358)
64 cd07033 TPP_PYR_DXS_TK_like Py 20.2 1.4E+02 0.0031 27.5 4.2 30 91-120 125-154 (156)
65 TIGR01676 GLDHase galactonolac 20.1 58 0.0013 36.8 1.8 20 513-532 515-534 (541)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.4e-38 Score=344.70 Aligned_cols=188 Identities=22% Similarity=0.300 Sum_probs=169.2
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCcc-------EEEeC
Q 043104 81 RFNLSSTLKPTVIITPLQEAHVSAAVICSK--QVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRS-------IDVDV 151 (570)
Q Consensus 81 r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~--~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~-------i~vd~ 151 (570)
.|.......|.+|++|+|++||+++|++|+ ++++++++||+||++.|.+...+ |++|||++||+ +++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence 488777889999999999999999999997 67999999999999999887754 99999999999 37889
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhcCCcCeec-CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-cc
Q 043104 152 KDESAWVEAGATLGELYYRIWQKSKLHGYP-AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RK 229 (570)
Q Consensus 152 ~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~ 229 (570)
+..+|+|++|++|.++++++.++| ++.+ .+.+..++|||.+++||+|..+.+||..+|||++++||+++|++++ ++
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~ 211 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP 211 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence 999999999999999999999987 5433 3455688999999999999999999999999999999999999999 77
Q ss_pred CCCchhhHHhhccCCCceEEEEeeEEeeeecCceEEEEEEEecc
Q 043104 230 AMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLL 273 (570)
Q Consensus 230 ~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~ 273 (570)
.+|+|||||+||| +|+|||||++|+|++|+|+.+.++.+.+..
T Consensus 212 ~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 212 TQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred CCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 8899999999998 579999999999999999977666666653
No 2
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=9.6e-34 Score=312.24 Aligned_cols=204 Identities=21% Similarity=0.267 Sum_probs=176.2
Q ss_pred cccCHHHHhcccCCCCCCCccceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEE
Q 043104 38 AYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLK 117 (570)
Q Consensus 38 ~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~ 117 (570)
|+++.++|.+.. ++|++. +.|.+ |+....++|.+|++|+|++||+++|++|+++++|++
T Consensus 1 ~~~~~~~~~~~~--------~~~~~~---~~w~n----------Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~ 59 (557)
T TIGR01677 1 PPDDPVRCVSGG--------ANCTVS---NAYGA----------FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMK 59 (557)
T ss_pred CCCCCeecccCC--------CCceee---cchhh----------cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEE
Confidence 456789998643 567765 55543 999999999999999999999999999999999999
Q ss_pred EEe-CCCCCCCCCccCC-CCeEEEEccCCcc-EEEeCCCCeEEEcCCCCHHHHHHHHHhcCCcCeecCC-CCCcceeccc
Q 043104 118 IRS-GGHDYEGLSYISD-RPFFILDMFNLRS-IDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAG-VCPTVGVGGH 193 (570)
Q Consensus 118 vrg-gGh~~~g~s~~~~-~~gvvIdl~~l~~-i~vd~~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~~G-~~~~vgvgG~ 193 (570)
++| +||++.+.+...+ +++++|||++||+ +++|.++++|+||||+++.+|.+.|.++| ++++.+ .+..++|||.
T Consensus 60 v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGa 137 (557)
T TIGR01677 60 VVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGM 137 (557)
T ss_pred EEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEh
Confidence 996 5999887665532 1369999999999 59999999999999999999999999988 666654 4467899999
Q ss_pred cccCccCCCc-ccccchhhceeEEEEEccCc------eEee-ccCCCchhhHHhhccCCCceEEEEeeEEeeeecCceEE
Q 043104 194 LSGGGYGNML-RKFGLSTDNVVDAKIVDVRG------RILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVT 265 (570)
Q Consensus 194 ~~gGg~G~~~-~~~G~~~D~v~~~~vV~a~G------~iv~-~~~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~ 265 (570)
+++|+||... ++||..+|+|++++||++|| ++++ +..+++|||||+||| +|+|||||++|+|++|.++...
T Consensus 138 iatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~~~ 216 (557)
T TIGR01677 138 MGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKRSV 216 (557)
T ss_pred hhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccC-CCccEeeeEEEEEEEccccceE
Confidence 9999999866 68999999999999999999 7887 667789999999999 5899999999999999987433
No 3
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.7e-33 Score=304.05 Aligned_cols=196 Identities=20% Similarity=0.313 Sum_probs=172.0
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcC
Q 043104 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEA 160 (570)
Q Consensus 82 ~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~a 160 (570)
|+....+.|.+|++|+|++||+++|++|++++++++++|+|||+.+.+.. ++++|||++|++| ++|.++++|+|||
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~---~gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT---DGFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC---CeEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 77778889999999999999999999999999999999999999876653 2899999999997 9999999999999
Q ss_pred CCCHHHHHHHHHhcCCcCeec-CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCchhhHH
Q 043104 161 GATLGELYYRIWQKSKLHGYP-AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWA 238 (570)
Q Consensus 161 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~DLfwa 238 (570)
|+++.+|.+.|.++| ++++ .|.++.++|||++++|+||. +.+||..+|+|+++++|++||++++ ++.+++|||||
T Consensus 84 G~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a 160 (438)
T TIGR01678 84 GIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQA 160 (438)
T ss_pred CCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHH
Confidence 999999999999988 5565 68889999999999999997 6889999999999999999999998 77778999999
Q ss_pred hhccCCCceEEEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHHHHhcc
Q 043104 239 IRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAP 289 (570)
Q Consensus 239 ~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (570)
.+|+ .|+|||||++|+|++|.+...... . .....++++.|++...
T Consensus 161 ~~~~-~G~lGIIt~vtl~l~p~~~l~~~~--~---~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 161 ARVS-LGCLGIIVTVTIQVVPQFHLQETS--F---VSTLKELLDNWDSHWK 205 (438)
T ss_pred HhcC-CCceEeeEEEEEEEEeccceEEEE--e---cCCHHHHHHHHHHHhh
Confidence 9998 579999999999999987643221 1 1225567777777543
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=6.3e-32 Score=291.22 Aligned_cols=172 Identities=23% Similarity=0.383 Sum_probs=154.8
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcC
Q 043104 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEA 160 (570)
Q Consensus 82 ~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~a 160 (570)
|+....+.|.+|++|+|++||+++|++|++ +++++|+|||+.+.+.. + +++|||++||+| ++|+++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 888778899999999999999999999974 79999999999886643 2 799999999997 9999999999999
Q ss_pred CCCHHHHHHHHHhcCCcCeec-CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCchhhHH
Q 043104 161 GATLGELYYRIWQKSKLHGYP-AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWA 238 (570)
Q Consensus 161 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~DLfwa 238 (570)
|+++.+|.+.|.++|. ++| .|.+..++|||.+++|+||.. .+||..+|+|++++||++||++++ ++.+++|||||
T Consensus 78 G~~l~~l~~~L~~~G~--~l~~~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 78 GTRLGALGPQLAQRGL--GLENQGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCHHHHHHHHHHcCC--ccccCCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 9999999999999984 444 345566889999999999974 589999999999999999999999 77778999999
Q ss_pred hhccCCCceEEEEeeEEeeeecCce
Q 043104 239 IRGGGGASFGVVLAYKIKLVPVPET 263 (570)
Q Consensus 239 ~rGgggg~fGVVt~~t~kl~p~p~~ 263 (570)
+||| +|+|||||++|+|++|.++.
T Consensus 155 ~~g~-~G~lGVIt~vtl~~~p~~~~ 178 (419)
T TIGR01679 155 ARVS-LGALGVISQVTLQTVALFRL 178 (419)
T ss_pred HHhC-CCceEEEEEEEEEeecceEe
Confidence 9999 57999999999999999864
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.2e-31 Score=292.41 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=162.3
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCH
Q 043104 86 STLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATL 164 (570)
Q Consensus 86 ~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~ 164 (570)
....|.+|+.|+|++||+++|++|.++++|+++|||||++.|.+.+.+ +++|||++||+| ++|+++++|+||||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG--GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC--cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 345799999999999999999999999999999999999998887762 899999999998 89999999999999999
Q ss_pred HHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee--c----cCCCchhhHH
Q 043104 165 GELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD--R----KAMGEDLFWA 238 (570)
Q Consensus 165 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~--~----~~~~~DLfwa 238 (570)
.+|.++|.++|..+.+.++...+++|||+++++++|..+.+||...|+|+++++|++||++++ . +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999984443333333479999999999999999999999999999999999999997 2 2456899999
Q ss_pred hhccCCCceEEEEeeEEeeeecCceEEEEEEEecch
Q 043104 239 IRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA 274 (570)
Q Consensus 239 ~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~ 274 (570)
..|+ .|+|||||++|+|++|.|+...+....+...
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~ 220 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFPSI 220 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCCCH
Confidence 9987 6899999999999999988655554444433
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=3.4e-32 Score=300.47 Aligned_cols=193 Identities=23% Similarity=0.311 Sum_probs=171.2
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHH
Q 043104 88 LKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGE 166 (570)
Q Consensus 88 ~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~ 166 (570)
..|.+|++|+|++||+++|++|+++++|+++|||||++.|.+...+ ++++|||++||+| ++|+++++|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4699999999999999999999999999999999999998776542 5999999999998 7999999999999999999
Q ss_pred HHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee--cc----CCCchhhHHhh
Q 043104 167 LYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD--RK----AMGEDLFWAIR 240 (570)
Q Consensus 167 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~--~~----~~~~DLfwa~r 240 (570)
|+++|.++| +.+|...++.++|||.++++++|..+.+||..+|+|++++||++||++++ .. ..++||||+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999988 67888778888999999999999999999999999999999999999996 21 24689999999
Q ss_pred ccCCCceEEEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHH
Q 043104 241 GGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKW 284 (570)
Q Consensus 241 Ggggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~ 284 (570)
|+ .|+|||||++++|++|.|+......+.|+..+++.+++...
T Consensus 289 Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 289 GS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred cC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 99 58999999999999999987766667776444455555443
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=9.4e-32 Score=292.92 Aligned_cols=195 Identities=16% Similarity=0.189 Sum_probs=170.9
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcC
Q 043104 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEA 160 (570)
Q Consensus 82 ~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~a 160 (570)
|+....+.|..+++|+|++||+++|+.|+++|++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|||
T Consensus 54 Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~A 130 (541)
T TIGR01676 54 WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQA 130 (541)
T ss_pred cCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEcC
Confidence 999889999999999999999999999999999999999999999887765 357999999997 9999999999999
Q ss_pred CCCHHHHHHHHHhcCCcCeec-CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCchhhHH
Q 043104 161 GATLGELYYRIWQKSKLHGYP-AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWA 238 (570)
Q Consensus 161 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~DLfwa 238 (570)
|+++.+|.++|.++| ++++ .|.++.++|||.+++|+||.. .+||..+|+|++++||+++|++++ ++.+++|||||
T Consensus 131 G~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~A 207 (541)
T TIGR01676 131 GIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFL 207 (541)
T ss_pred CCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHH
Confidence 999999999999998 6665 477889999999999999985 479999999999999999999998 77789999999
Q ss_pred hhccCCCceEEEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHHHHhc
Q 043104 239 IRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVA 288 (570)
Q Consensus 239 ~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~ 288 (570)
.||| +|+|||||++|+|++|.+.... .....+ ..++++.+.++.
T Consensus 208 args-lG~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 208 ARCG-LGGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HhcC-CCceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHH
Confidence 9999 5799999999999999987422 222223 345566666654
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.97 E-value=9.8e-31 Score=287.13 Aligned_cols=197 Identities=21% Similarity=0.261 Sum_probs=168.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCH
Q 043104 86 STLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATL 164 (570)
Q Consensus 86 ~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~ 164 (570)
....|.+|++|+|++||+++|++|+++++|+.+||+||++.|.+.+.. ++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 456899999999999999999999999999999999999987666543 4899999999997 99999999999999999
Q ss_pred HHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-cc----CCCchhhHHh
Q 043104 165 GELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RK----AMGEDLFWAI 239 (570)
Q Consensus 165 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~----~~~~DLfwa~ 239 (570)
.+|.++|.++|..++..++.....+|||.+++++.|+.+.+||...|+|++++||++||++++ .. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 999999999984332224444568899999999999999999999999999999999999998 21 3478999999
Q ss_pred hccCCCceEEEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHH
Q 043104 240 RGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKW 284 (570)
Q Consensus 240 rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~ 284 (570)
+|+ .|+|||||++|+|++|.|+....+.+.|...+++.+++...
T Consensus 211 ~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 211 TGS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 999 57999999999999999987666666665444444444443
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=5.7e-29 Score=257.05 Aligned_cols=179 Identities=26% Similarity=0.389 Sum_probs=155.0
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCCccCCCCeEEEEcc---CCccE-EEeCCCCe
Q 043104 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQV--GFQLKIRSGGHDYEGLSYISDRPFFILDMF---NLRSI-DVDVKDES 155 (570)
Q Consensus 82 ~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~--~~~~~vrggGh~~~g~s~~~~~~gvvIdl~---~l~~i-~vd~~~~~ 155 (570)
|.......|.+|+.|+|+|||++++|.|... .+|+++||+|||..|.+.... +|++|.|+ .|+++ .+..++..
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 5455667899999999999999999999999 899999999999999888743 48776664 45555 56677799
Q ss_pred EEEcCCCCHHHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCch
Q 043104 156 AWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGED 234 (570)
Q Consensus 156 v~V~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~D 234 (570)
|.|.||..|-+|.+++.++|..-.++.-..+ .+|||.++.+|+|.++.+||...+||++++||+++|++++ ++..|++
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~ 213 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSN 213 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCce
Confidence 9999999999999999998821123333333 8899999999999999999999999999999999999999 7789999
Q ss_pred hhHHhhccCCCceEEEEeeEEeeeecCce
Q 043104 235 LFWAIRGGGGASFGVVLAYKIKLVPVPET 263 (570)
Q Consensus 235 Lfwa~rGgggg~fGVVt~~t~kl~p~p~~ 263 (570)
||.++-|| .|.|||||+++++|+|+|++
T Consensus 214 lf~~vlGg-lGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 214 LFFLVLGG-LGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred eeeeeecc-CcceeeEEEEEEEeccCCcc
Confidence 99999999 68999999999999999953
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=3e-29 Score=262.68 Aligned_cols=182 Identities=24% Similarity=0.319 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHHHHhcC
Q 043104 98 QEAHVSAAVICSKQVGFQLKIRSGGH-DYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYRIWQKS 175 (570)
Q Consensus 98 s~~dV~~~V~~a~~~~~~~~vrggGh-~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~l~~~g 175 (570)
.++||+++|++|+++++|++++|||| ++.|.+. + +++|||++||+| ++|+++.+|+|+||+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 5666532 3 579999999998 9999999999999999999999999999
Q ss_pred CcCeecC-CCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-c-----cCCCchhhHHhhccCCCceE
Q 043104 176 KLHGYPA-GVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-R-----KAMGEDLFWAIRGGGGASFG 248 (570)
Q Consensus 176 ~~l~~~~-G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~-----~~~~~DLfwa~rGgggg~fG 248 (570)
+.+++.+ ..+...+|||++++|++|+.+.+||..+|+|+++++|++||++++ . +..++||||+++|+ .|+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cchhh
Confidence 6555533 345568999999999999999999999999999999999999997 1 23578999999999 58999
Q ss_pred EEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHHH
Q 043104 249 VVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQ 285 (570)
Q Consensus 249 VVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 285 (570)
|||++|||++|.|+....+.+.++ ..++.+.+.+|.
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999999986555444443 222344444443
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.96 E-value=3.3e-29 Score=270.14 Aligned_cols=189 Identities=23% Similarity=0.308 Sum_probs=162.5
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHHH
Q 043104 93 IITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYRI 171 (570)
Q Consensus 93 vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~l 171 (570)
||+|+|++||+++|++|+++++|+.+|||||++.|.+.+.+ ++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 58999999999999999999999999999999987766553 5899999999998 999999999999999999999999
Q ss_pred HhcCCcCeec--CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-c-----cCCCchhhHHhhccC
Q 043104 172 WQKSKLHGYP--AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-R-----KAMGEDLFWAIRGGG 243 (570)
Q Consensus 172 ~~~g~~l~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~-----~~~~~DLfwa~rGgg 243 (570)
.++| +.+| ++.....+|||.+.+++.|..+.+||...|+|++++||++||++++ . ...++||+|.+.|+
T Consensus 80 ~~~g--l~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs- 156 (413)
T TIGR00387 80 EEHN--LFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS- 156 (413)
T ss_pred HHcC--CeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-
Confidence 9998 4554 3444567899999999999999999999999999999999999997 2 33467999999998
Q ss_pred CCceEEEEeeEEeeeecCceEEEEEEEecchhhHHHHHHHHH
Q 043104 244 GASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQ 285 (570)
Q Consensus 244 gg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 285 (570)
.|+|||||+++||++|.|+....+.+.+...+++.+++..+.
T Consensus 157 ~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 157 EGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999876666666654444555554443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=6e-28 Score=265.15 Aligned_cols=176 Identities=17% Similarity=0.257 Sum_probs=159.7
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEc
Q 043104 81 RFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVE 159 (570)
Q Consensus 81 r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~ 159 (570)
+|+....+.|.+++.|+|++||+++|++|+++|++++++|+|||+.+....++ .+|||++|++| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~---glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE---GMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC---EEEECcCCCCcEEEeCCCCEEEEc
Confidence 39999999999999999999999999999999999999999999988776553 46899999997 999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcCeecC-CCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCchhhH
Q 043104 160 AGATLGELYYRIWQKSKLHGYPA-GVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFW 237 (570)
Q Consensus 160 aG~~~~~l~~~l~~~g~~l~~~~-G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~DLfw 237 (570)
||+++.+|.+.|.++| ++++. |.....+|||.+++|+||... .+|..+|+|+++++|+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999998 56654 556678999999999999865 68999999999999999999998 6677899999
Q ss_pred HhhccCCCceEEEEeeEEeeeecCce
Q 043104 238 AIRGGGGASFGVVLAYKIKLVPVPET 263 (570)
Q Consensus 238 a~rGgggg~fGVVt~~t~kl~p~p~~ 263 (570)
|.|++ .|.|||||++|||++|.++.
T Consensus 242 aar~g-lG~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 242 LARCG-LGGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred Hhhcc-CCCCcEEEEEEEEEEecCce
Confidence 99998 57899999999999999874
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=8.7e-27 Score=213.81 Aligned_cols=136 Identities=28% Similarity=0.497 Sum_probs=125.1
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCcc-EEEeCCCCeEEEcCCCCHHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRS-IDVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~-i~vd~~~~~v~V~aG~~~~~l~ 168 (570)
|.+|++|+|++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|+++++++||||+++.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 8899999999999999999999999999999999998777633 499999999999 5999999999999999999999
Q ss_pred HHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee
Q 043104 169 YRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD 227 (570)
Q Consensus 169 ~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~ 227 (570)
++|.++|..+.+.++.+..+++||++++|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999885444447888889999999999999999999999999999999999999986
No 14
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.92 E-value=1.1e-24 Score=225.49 Aligned_cols=209 Identities=20% Similarity=0.272 Sum_probs=182.4
Q ss_pred cCCcccCHHHHhcccCCCCCCCccceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCC
Q 043104 35 SDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGF 114 (570)
Q Consensus 35 ~~~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~ 114 (570)
++.||++++.|.+.+ ..+..+ ..|.+ |+.+..|+.+-|-+|+|++|+.++|+.|+++|.
T Consensus 16 ~S~Pp~~p~r~~~~~--------~~~t~~---~tY~a----------fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~ 74 (518)
T KOG4730|consen 16 SSIPPPPPFRCDSGN--------TFCTVA---NTYGA----------FPDRSTCKAANVNYPKTEAELVELVAAATEAGK 74 (518)
T ss_pred ecCCCCCCccccccc--------eeeeee---ecccc----------cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCc
Confidence 456788899998643 223333 67876 888888999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHHHHhcCCcCeec-CCCCCcceecc
Q 043104 115 QLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYRIWQKSKLHGYP-AGVCPTVGVGG 192 (570)
Q Consensus 115 ~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG 192 (570)
++++.|.||+..+..+.+ |.+|+|..||+| ++|++..++|||+|+++.||.+++++.| +++| .|.-..+.|||
T Consensus 75 kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~G--lsL~~~~si~e~sVgG 149 (518)
T KOG4730|consen 75 KIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLG--LSLPNAPSISEQSVGG 149 (518)
T ss_pred eEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcC--ccccCCCceecceeee
Confidence 999999999999998876 589999999996 9999999999999999999999999988 6666 45668899999
Q ss_pred ccccCccCCCcccccchhhceeEEEEEccCceEee-ccCCCchhhHHhhccCCCceEEEEeeEEeeeecCceEEEEEEE
Q 043104 193 HLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAE 270 (570)
Q Consensus 193 ~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~ 270 (570)
.++.|.||...+-|+.....+.-..++.++|.++. +++..||+|.|.+-+ .|.+|||.++|+++.|..+.+..+.+.
T Consensus 150 ii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvS-LG~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 150 IISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVS-LGVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred EEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhc-ccceeEEEEEEEEEEecceeeeEEEEe
Confidence 99999999988877777777777788889998877 778889999999999 579999999999999999987766654
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.90 E-value=7.2e-24 Score=218.90 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=139.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccC-CccEEEeCCCCeEEEcCCCCHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFN-LRSIDVDVKDESAWVEAGATLG 165 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~-l~~i~vd~~~~~v~V~aG~~~~ 165 (570)
...|.+++.|+|++||+++|++|+++++|+.++|||||....+.+.+ +++|||++ |+.|++ ++.+++||||++|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 45799999999999999999999999999999999999765333323 89999998 998854 45789999999999
Q ss_pred HHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCccccc-chhhceeEEEEEccCceEeeccCCCchhhHHhhccCC
Q 043104 166 ELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFG-LSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGG 244 (570)
Q Consensus 166 ~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G-~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGggg 244 (570)
+|.+++.++| + .|.+..+|+.|. .||+.+++.+.|| ..+|+|+++++|++||++++.. ++|++|++|++++
T Consensus 104 ~L~~~l~~~G--l---~gle~~~gipGT-VGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~ 175 (298)
T PRK13905 104 KLARFAAEAG--L---SGLEFAAGIPGT-VGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSAL 175 (298)
T ss_pred HHHHHHHHcC--C---CcchhccCCCcc-hhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccC
Confidence 9999999988 3 466677778774 5889999999998 6889999999999999999832 3599999999865
Q ss_pred C-ceEEEEeeEEeeeecC
Q 043104 245 A-SFGVVLAYKIKLVPVP 261 (570)
Q Consensus 245 g-~fGVVt~~t~kl~p~p 261 (570)
+ .+||||+++||++|..
T Consensus 176 ~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 176 QEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 4 4899999999999974
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.88 E-value=4.7e-22 Score=214.24 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=160.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCC----CeEEEEccCCccE-EEeCCCCeEEEcCC
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDR----PFFILDMFNLRSI-DVDVKDESAWVEAG 161 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~----~gvvIdl~~l~~i-~vd~~~~~v~V~aG 161 (570)
...|.+||+|.|++||+++|++|+++++||.+||||+++.|.+.+.+. ++|+|||++||+| ++| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988887532 3899999999998 788 5678999999
Q ss_pred CCHHHHHHHHHhcCCcCeecC--CC-CCcceeccccccCccCCCcccccchhhceeEEEEEccCceE-------ee--c-
Q 043104 162 ATLGELYYRIWQKSKLHGYPA--GV-CPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRI-------LD--R- 228 (570)
Q Consensus 162 ~~~~~l~~~l~~~g~~l~~~~--G~-~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~i-------v~--~- 228 (570)
+++.+|.++|.++|. .++. |+ |-.++|||.++.++-|....+||...++++. ++|+++|++ ++ .
T Consensus 115 Vtl~~LeeaLk~~Gl--~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~ 191 (564)
T PRK11183 115 TTLYQLEKALKPLGR--EPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGET 191 (564)
T ss_pred CcHHHHHHHHHHhCC--CCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCC
Confidence 999999999999984 3332 23 2345788999999999999999999999999 999999999 33 1
Q ss_pred --------cCCCc----------------------------------hhhHHh--hccCCCceEEEEeeEEeeeecCceE
Q 043104 229 --------KAMGE----------------------------------DLFWAI--RGGGGASFGVVLAYKIKLVPVPETV 264 (570)
Q Consensus 229 --------~~~~~----------------------------------DLfwa~--rGgggg~fGVVt~~t~kl~p~p~~~ 264 (570)
+..+- |+...+ -|+ .|.+||+ +++++++|.|+..
T Consensus 192 ~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~ 269 (564)
T PRK11183 192 PEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNT 269 (564)
T ss_pred HHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcc
Confidence 11122 666666 677 6899999 9999999999988
Q ss_pred EEEEEEecchhhHHHHHHHHHH
Q 043104 265 TVFRAERLLAENATDVVYKWQL 286 (570)
Q Consensus 265 ~~~~~~~~~~~~a~~~~~~~~~ 286 (570)
.+|.+.++..+.+.++......
T Consensus 270 ~vf~ig~n~~~~~~~~rr~il~ 291 (564)
T PRK11183 270 QVFYIGTNDPAVLTEIRRHILA 291 (564)
T ss_pred eEEEEeCCCHHHHHHHHHHHHH
Confidence 8888888766656666655443
No 17
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.5e-20 Score=194.18 Aligned_cols=162 Identities=12% Similarity=0.143 Sum_probs=133.5
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGE 166 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~ 166 (570)
...|.+++.|+|++||++++++|+++++|+.++|||||+...+...+ |++|||++|+.|+++ +.+++||||+.+.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 45699999999999999999999999999999999999874333232 899999889999876 46899999999999
Q ss_pred HHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccc-hhhceeEEEEEccCceEeeccCCCchhhHHhhccCCC
Q 043104 167 LYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGL-STDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGA 245 (570)
Q Consensus 167 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg 245 (570)
|.+++.++| + .|....+|+.|.+ ||+.+++++.||. ..|.+.+++++++||++++.. ..|+.|++|.+...
T Consensus 110 L~~~~~~~g--l---~Gle~~~giPGtV-GGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~~ 181 (305)
T PRK12436 110 VSRIALDHN--L---TGLEFACGIPGSV-GGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVFA 181 (305)
T ss_pred HHHHHHHcC--C---ccchhhcCCccch-hHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcCC
Confidence 999999988 3 2444455666654 7888888888994 568888999999999999822 36899999987432
Q ss_pred -ceEEEEeeEEeeeec
Q 043104 246 -SFGVVLAYKIKLVPV 260 (570)
Q Consensus 246 -~fGVVt~~t~kl~p~ 260 (570)
+..||++++||+.+.
T Consensus 182 ~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 182 NNHYIILEARFELEEG 197 (305)
T ss_pred CCCEEEEEEEEEEcCC
Confidence 256999999999875
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.84 E-value=1.6e-20 Score=192.40 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=140.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGE 166 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~ 166 (570)
...|.++++|+|++||++++++|+++++|+.++|||||....+...+ +++|++++|+.+.++. +.+++||||+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 45799999999999999999999999999999999999887665444 8999999998887766 57999999999999
Q ss_pred HHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhh-ceeEEEEEccCceEeeccCCCchhhHHhhccCCC
Q 043104 167 LYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTD-NVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGA 245 (570)
Q Consensus 167 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D-~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg 245 (570)
|.+++.++| | .|.+..+|++|. .||+.+++++.||..++ .|+++++|++||++++.. ..|+.|++|.+...
T Consensus 87 l~~~~~~~G--l---~GlE~l~giPGt-vGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f~ 158 (284)
T TIGR00179 87 LVKYALKNG--L---SGLEFLAGIPGT-VGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIFQ 158 (284)
T ss_pred HHHHHHHCC--C---cccccCCCCCch-HHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCccccC
Confidence 999999988 4 599999999995 69999999999999985 689999999999998732 36999999977432
Q ss_pred c-e-EEEEeeEEeeee
Q 043104 246 S-F-GVVLAYKIKLVP 259 (570)
Q Consensus 246 ~-f-GVVt~~t~kl~p 259 (570)
. . .||+++++++.+
T Consensus 159 ~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 159 HKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCcEEEEEEEEEecc
Confidence 1 1 599999999844
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=2.7e-20 Score=192.02 Aligned_cols=163 Identities=19% Similarity=0.178 Sum_probs=135.1
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccC-CccEEEeCCCCeEEEcCCCCH
Q 043104 86 STLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFN-LRSIDVDVKDESAWVEAGATL 164 (570)
Q Consensus 86 ~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~-l~~i~vd~~~~~v~V~aG~~~ 164 (570)
....|.+++.|+|++||++++++|+++++|+.++|||||......+.+ +++|++++ ++.++++ +.+++||||+.+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 345799999999999999999999999999999999999864332222 89999976 5556544 469999999999
Q ss_pred HHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcc-cccchhhceeEEEEEccCceEeeccCCCchhhHHhhccC
Q 043104 165 GELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLR-KFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGG 243 (570)
Q Consensus 165 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~-~~G~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgg 243 (570)
.+|.+++.++| | .|.++.+|++| ..||+..++++ +||...|+|.++++|+++| +++. ..+|+.|++|++.
T Consensus 108 ~~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~--~~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFV--PAAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEe--ehhhcCcccceec
Confidence 99999999988 4 48899999999 45999999886 6677889999999999999 4442 2369999999974
Q ss_pred CCceEEEEeeEEeeeecC
Q 043104 244 GASFGVVLAYKIKLVPVP 261 (570)
Q Consensus 244 gg~fGVVt~~t~kl~p~p 261 (570)
-+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333489999999999854
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=7.1e-20 Score=189.33 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=137.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHHH
Q 043104 88 LKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 88 ~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~l 167 (570)
..+.+++.|+|++||++++++|+++++|+.++|||||....+...+ |++|++++|+.|+++. .+++||||+.+.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4688999999999999999999999999999999999874443333 8999998899998763 58999999999999
Q ss_pred HHHHHhcCCcCeecCCCCCcceeccccccCccCCCccccc-chhhceeEEEEEccCceEeeccCCCchhhHHhhccCCCc
Q 043104 168 YYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFG-LSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGAS 246 (570)
Q Consensus 168 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G-~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg~ 246 (570)
.+++.++| + .|.+..+|++|. .||+..++++.|| ..+|+|+++++|+++|++++.. ..|+.|++|.+....
T Consensus 111 ~~~~~~~G--l---~GlE~~~gIPGt-VGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYA--L---TGLEFACGIPGS-IGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcC--C---ccchhhcCCCcc-HhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCC
Confidence 99999988 3 577788899994 5999999999996 7789999999999999999832 368999999874322
Q ss_pred -eEEEEeeEEeeeec
Q 043104 247 -FGVVLAYKIKLVPV 260 (570)
Q Consensus 247 -fGVVt~~t~kl~p~ 260 (570)
--||++++|+|.|.
T Consensus 183 ~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 183 EHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEEEEEECCC
Confidence 23999999999863
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=1.6e-19 Score=189.69 Aligned_cols=164 Identities=21% Similarity=0.209 Sum_probs=137.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGE 166 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~ 166 (570)
...+.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ |+||+++ ++.++++.++.+++|++|+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 45689999999999999999999999999999999999875443333 8999998 58898886678999999999999
Q ss_pred HHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEEccC-ceEeeccCCCchhhHHhhccC-
Q 043104 167 LYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIVDVR-GRILDRKAMGEDLFWAIRGGG- 243 (570)
Q Consensus 167 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV~a~-G~iv~~~~~~~DLfwa~rGgg- 243 (570)
|.+++.++| + .|....+||+|.+ ||+.-++.+.||.. .|.|.++++++.+ |++++.. ++||+|++|++.
T Consensus 107 l~~~a~~~G--L---~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f 178 (363)
T PRK13903 107 VVARTVEAG--L---GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVL 178 (363)
T ss_pred HHHHHHHcC--C---ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccccc
Confidence 999999998 2 5666667777776 77777778888876 6999999999965 9999832 579999999962
Q ss_pred -CCceEEEEeeEEeeeecC
Q 043104 244 -GASFGVVLAYKIKLVPVP 261 (570)
Q Consensus 244 -gg~fGVVt~~t~kl~p~p 261 (570)
+++++|||+++|||.|..
T Consensus 179 ~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 179 KHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCCCEEEEEEEEEEEcCC
Confidence 225789999999999874
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=176.10 Aligned_cols=191 Identities=21% Similarity=0.223 Sum_probs=160.5
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCC--eEEEEccCCccE-EEeCCCCeEE
Q 043104 82 FNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRP--FFILDMFNLRSI-DVDVKDESAW 157 (570)
Q Consensus 82 ~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~--gvvIdl~~l~~i-~vd~~~~~v~ 157 (570)
|.....+-|..||.|+..+||.++|+.|.+|++-+.+.|||++.. ++.++.++. -+.+|++.||+| -+|.++-|+.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 444556789999999999999999999999999999999999965 666665433 456788999998 8999999999
Q ss_pred EcCCCCHHHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-----ccCCC
Q 043104 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-----RKAMG 232 (570)
Q Consensus 158 V~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-----~~~~~ 232 (570)
+++|.+-.+|.+.|.++|....--+-+..-.++||+++..+.|+--.+||..-|-|+.+++|+|.|.+-. +-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999883221122222345899999999999999999999999999999999998775 34568
Q ss_pred chhhHHhhccCCCceEEEEeeEEeeeecCceEEEEEEEecc
Q 043104 233 EDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLL 273 (570)
Q Consensus 233 ~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~ 273 (570)
||+-.-+-|+ .|++||||++++|..|+|+.-....+.|+.
T Consensus 313 PDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCc
Confidence 9999999999 689999999999999999865555556653
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=4.7e-18 Score=174.98 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=134.3
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCc-cEEEeCCCCeEEEcCCCCHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLR-SIDVDVKDESAWVEAGATLG 165 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~-~i~vd~~~~~v~V~aG~~~~ 165 (570)
......++.|+|++|+++++++|+++++|+.++|+|||+...+.+.+ |++|+++.++ .+..+.++.+++|+||+.|.
T Consensus 18 Gg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~ 95 (295)
T PRK14649 18 GGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMA 95 (295)
T ss_pred CceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHH
Confidence 44678899999999999999999999999999999999988776655 9999998754 67666555589999999999
Q ss_pred HHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccc-cchhhceeEEEEEccCceEeeccCCCchhhHHhhccCC
Q 043104 166 ELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKF-GLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGG 244 (570)
Q Consensus 166 ~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~-G~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGggg 244 (570)
+|..++.++| | .|..+.+||+|.+ ||+.-++.+.| +..+|+|.++++++.+|++++.. ..||+|++|-+..
T Consensus 96 ~l~~~~~~~G--L---~GlE~l~GIPGTv-GGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~ 167 (295)
T PRK14649 96 GTARRLAAQG--W---AGLEWAEGLPGTI-GGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVL 167 (295)
T ss_pred HHHHHHHHcC--C---ccccccCCCCcch-hHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeec
Confidence 9999999988 3 6788999999955 66444445555 56679999999999999998732 3599999998733
Q ss_pred Cce---------EEEEeeEEeeeecC
Q 043104 245 ASF---------GVVLAYKIKLVPVP 261 (570)
Q Consensus 245 g~f---------GVVt~~t~kl~p~p 261 (570)
-.. -||++++|++.|..
T Consensus 168 ~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 168 KQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ccccccccccCCeEEEEEEEEECCCC
Confidence 221 28999999987653
No 24
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.77 E-value=1e-18 Score=177.22 Aligned_cols=186 Identities=21% Similarity=0.251 Sum_probs=165.0
Q ss_pred ccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEE
Q 043104 79 NARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAW 157 (570)
Q Consensus 79 n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~ 157 (570)
|.-|.....-.-..|+.|.|+++|++++++|+++++-+++.||-++.-|.|.+.- +-|||+|.+||+| ++|+-.+++.
T Consensus 79 n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil~ 157 (511)
T KOG1232|consen 79 NTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGILK 157 (511)
T ss_pred hhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceEE
Confidence 5557766667889999999999999999999999999999999999888887753 3699999999998 8999999999
Q ss_pred EcCCCCHHHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee------ccCC
Q 043104 158 VEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD------RKAM 231 (570)
Q Consensus 158 V~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~------~~~~ 231 (570)
+++|+.+.++...++++|..+++..|.-.++-|||.+++.+-|..--+||.-+-+|+++|+|+|+|+|++ ....
T Consensus 158 cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNT 237 (511)
T KOG1232|consen 158 CDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNT 237 (511)
T ss_pred eccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCc
Confidence 9999999999999999996555557888888899999999999988999999999999999999999996 2335
Q ss_pred CchhhHHhhccCCCceEEEEeeEEeeeecCceEEE
Q 043104 232 GEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTV 266 (570)
Q Consensus 232 ~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~ 266 (570)
+-|+-....|+ .|++||||.+++-+.|.|+.+.+
T Consensus 238 gydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 238 GYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred cccchhheecC-CceeeEEeeEEEeecCCCcceeE
Confidence 67888888898 68999999999999999986544
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=6.5e-16 Score=158.77 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=136.7
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHHH
Q 043104 88 LKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 88 ~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~l 167 (570)
-...+++.|+|++|+++++++|++ ++|+.+.|+|+|....+.+.+ ++||.+++|+.|+++. ..++|+||+.+.+|
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L 106 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLKKL 106 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHHHH
Confidence 456789999999999999999999 999999999999887776554 9999997799998873 58999999999999
Q ss_pred HHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccc-hhhceeEEEEEccCceEeeccCCCchhhHHhhccCCCc
Q 043104 168 YYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGL-STDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGAS 246 (570)
Q Consensus 168 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~-~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg~ 246 (570)
..++.++| ..|....+||+|.+ ||+.-++++.||. ..|.|.++++++ +|++++.. ..|+-|.+|.+.-..
T Consensus 107 ~~~~~~~G-----L~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~ 177 (297)
T PRK14653 107 CLVAAKNG-----LSGFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHHCC-----CcchhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCC
Confidence 99999998 36778888888886 9999999999999 679999999999 78888732 348999999763322
Q ss_pred --eEEEEeeEEeeeecC
Q 043104 247 --FGVVLAYKIKLVPVP 261 (570)
Q Consensus 247 --fGVVt~~t~kl~p~p 261 (570)
--||++++||+.|..
T Consensus 178 ~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCcEEEEEEEEEEecCC
Confidence 129999999998854
No 26
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.61 E-value=2.2e-16 Score=117.45 Aligned_cols=47 Identities=49% Similarity=0.861 Sum_probs=34.7
Q ss_pred ccccCCCCccCCCCCCCCccccchhhhhhhccccHHHHHHhhhhcCcCCcccCCCCCC
Q 043104 479 AYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIP 536 (570)
Q Consensus 479 ~YvNy~d~dlg~~~~~~~~~~~~~~~g~~Yfg~N~~RL~~IK~kyDP~n~F~~~qsI~ 536 (570)
+|+||+|.+++ .+.|.+.|||+|++||++||++|||+|+|+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999999864 137899999999999999999999999999999997
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=6.5e-15 Score=148.95 Aligned_cols=165 Identities=20% Similarity=0.189 Sum_probs=144.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHH
Q 043104 86 STLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLG 165 (570)
Q Consensus 86 ~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~ 165 (570)
.......++.|++.+|++++++.+++.++|+.+.|+|.|..-.+...+ +++|.+.+++.++++.+...++|++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 345678899999999999999999999999999999999876555544 999999999999888877799999999999
Q ss_pred HHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchh-hceeEEEEEccCceEeeccCCCchhhHHhhccCC
Q 043104 166 ELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLST-DNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGG 244 (570)
Q Consensus 166 ~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~-D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGggg 244 (570)
+|.+.+.++| ..|...-+||+|.+ ||+.-++.+.||... |.+.++++++.+|++.+- .++||-|+||-+..
T Consensus 95 ~l~~~~~~~g-----l~GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l--~~~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENG-----LSGLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWL--SAEELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcC-----CcchhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEE--EHHHhCcccccCcC
Confidence 9999999988 37888888999988 899999999999975 999999999999999972 23699999998754
Q ss_pred Cce-EEEEeeEEeeeec
Q 043104 245 ASF-GVVLAYKIKLVPV 260 (570)
Q Consensus 245 g~f-GVVt~~t~kl~p~ 260 (570)
..- .||++++|+|.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 333 8999999999886
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.57 E-value=1.3e-14 Score=148.89 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=138.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcc-CCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHH
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYI-SDRPFFILDMFNLRSIDVDVKDESAWVEAGATLG 165 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~-~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~ 165 (570)
......++.|+|++|+++++++++++++|+.+.|+|+|....+.+ .+ |++|.+.+|+.++++. ..++|+||+.|.
T Consensus 30 GG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~ 105 (302)
T PRK14650 30 GGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFE 105 (302)
T ss_pred CcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHH
Confidence 345677899999999999999999999999999999998766554 43 8899886799998764 479999999999
Q ss_pred HHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEEccCceEeeccCCCchhhHHhhccCC
Q 043104 166 ELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGG 244 (570)
Q Consensus 166 ~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGggg 244 (570)
+|..++.++| ..|....+||+|.+ ||+.-++.+.||.. .|.|.++++++.+|++++.. ..|+.|++|-+..
T Consensus 106 ~l~~~~~~~g-----l~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f 177 (302)
T PRK14650 106 DLCKFALQNE-----LSGLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPF 177 (302)
T ss_pred HHHHHHHHcC-----CchhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccC
Confidence 9999999998 37888889999998 88999999999976 59999999999999998722 3699999997743
Q ss_pred Cc-eEEEEeeEEeeeecCc
Q 043104 245 AS-FGVVLAYKIKLVPVPE 262 (570)
Q Consensus 245 g~-fGVVt~~t~kl~p~p~ 262 (570)
.. =.||++++|++.|..+
T Consensus 178 ~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 178 QNKNTFILKATLNLKKGNK 196 (302)
T ss_pred CCCCEEEEEEEEEEcCCCH
Confidence 21 1499999999988543
No 29
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.57 E-value=1e-14 Score=148.84 Aligned_cols=185 Identities=16% Similarity=0.165 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCC---CCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHHHH
Q 043104 97 LQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISD---RPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYRIW 172 (570)
Q Consensus 97 ~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~---~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~l~ 172 (570)
+.+.+||+-|+-.+..+-+-.+..+.-+|...|.... ...--|++..|.+| ++|.++.||+|||+++++|+.+.+.
T Consensus 61 qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~li 140 (543)
T KOG1262|consen 61 QRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLI 140 (543)
T ss_pred HHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhc
Confidence 3456677777666666655555566666655444321 12355677766665 9999999999999999999999999
Q ss_pred hcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee--ccCCCchhhHHhhccCCCceEEE
Q 043104 173 QKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD--RKAMGEDLFWAIRGGGGASFGVV 250 (570)
Q Consensus 173 ~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~--~~~~~~DLfwa~rGgggg~fGVV 250 (570)
..|..|++. ..-...+|||++-|-|+-..|.+||+..|.+.+.|||+|||++++ ...+++|||+|+-.+ .|++|..
T Consensus 141 p~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfL 218 (543)
T KOG1262|consen 141 PKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFL 218 (543)
T ss_pred cCCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccc-cCchhee
Confidence 999776654 344678899999999999999999999999999999999999998 455789999999999 6899999
Q ss_pred EeeEEeeeecCceEEEEEEEecchhhHHHHHHHHHH
Q 043104 251 LAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQL 286 (570)
Q Consensus 251 t~~t~kl~p~p~~~~~~~~~~~~~~~a~~~~~~~~~ 286 (570)
+.+|+|+.|+.+.+. +.+..-.+..+..+++.+
T Consensus 219 VaatiriIkvK~Yvk---ltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 219 VAATIRIIKVKKYVK---LTYIPVHGLDEYCKKITE 251 (543)
T ss_pred eeeEEEEEeccceEE---EEEEecccHHHHHHHHHh
Confidence 999999999988643 223212224445555555
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.57 E-value=1.2e-14 Score=151.24 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=136.1
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEe-CCC--CeEEEcCCCCH
Q 043104 88 LKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVD-VKD--ESAWVEAGATL 164 (570)
Q Consensus 88 ~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd-~~~--~~v~V~aG~~~ 164 (570)
-....++.|.|++|+++++++|+++++|+.+.|+|+|....+ ..+ |++|.+ +++.++++ .++ .+++|+||+.|
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 356788999999999999999999999999999999987666 443 899988 48999873 222 27999999999
Q ss_pred HHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEEccC-ceEeeccCCCchhhHHhhcc
Q 043104 165 GELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIVDVR-GRILDRKAMGEDLFWAIRGG 242 (570)
Q Consensus 165 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV~a~-G~iv~~~~~~~DLfwa~rGg 242 (570)
.+|.+.+.++| ..|....+||+|.+ ||+.-++.+.||.. .|.|.++++++.+ |++++.. ..|+.|++|-+
T Consensus 95 ~~l~~~~~~~g-----l~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S 166 (334)
T PRK00046 95 HDLVLWTLQQG-----MPGLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDS 166 (334)
T ss_pred HHHHHHHHHcC-----chhhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccccc
Confidence 99999999988 37888999999998 88999999999976 4999999999998 9988722 36999999977
Q ss_pred CCCc----eEEEEeeEEeeeec
Q 043104 243 GGAS----FGVVLAYKIKLVPV 260 (570)
Q Consensus 243 ggg~----fGVVt~~t~kl~p~ 260 (570)
.... --||++++|+|.|-
T Consensus 167 ~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 167 IFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCCCcCCEEEEEEEEEecCC
Confidence 4322 13999999999885
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=7.7e-14 Score=145.16 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=136.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEe---CCCCeEEEcCCCC
Q 043104 87 TLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVD---VKDESAWVEAGAT 163 (570)
Q Consensus 87 ~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd---~~~~~v~V~aG~~ 163 (570)
......++.|+|++|+++++++++++++|+.+.|+|.|....+.+.+ |+||.+.+|+.+++. .+...++|++|+.
T Consensus 27 GG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~ 104 (354)
T PRK14648 27 GGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLP 104 (354)
T ss_pred CcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCc
Confidence 34567789999999999999999999999999999999887665554 999999779988752 2224799999999
Q ss_pred HHHHHHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEE--------------------ccC
Q 043104 164 LGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIV--------------------DVR 222 (570)
Q Consensus 164 ~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV--------------------~a~ 222 (570)
|.+|...+.++| ..|....+||+|.+ ||+.-++.+.||.. .|.|.+++++ +.+
T Consensus 105 ~~~Lv~~~~~~g-----l~GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~ 178 (354)
T PRK14648 105 VAALLAFCAHHA-----LRGLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKR 178 (354)
T ss_pred HHHHHHHHHHcC-----CcchhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCC
Confidence 999999999988 37888899999998 88999999999976 4999999999 566
Q ss_pred ceEee-----------ccCCCchhhHHhhccCCCc---------eEEEEeeEEeeeecC
Q 043104 223 GRILD-----------RKAMGEDLFWAIRGGGGAS---------FGVVLAYKIKLVPVP 261 (570)
Q Consensus 223 G~iv~-----------~~~~~~DLfwa~rGgggg~---------fGVVt~~t~kl~p~p 261 (570)
|++.. ..-.+.|+.|++|-+..-. --||++++|+|.|..
T Consensus 179 g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 179 GECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 77620 0123469999999874321 129999999998754
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.33 E-value=7.8e-12 Score=126.72 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=121.2
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccC-CccEEEeCCCCeEEEcCCCCHHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFN-LRSIDVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~-l~~i~vd~~~~~v~V~aG~~~~~l~ 168 (570)
...++ |.+++|+++++ ++|+.+.|+|+|....+...+ ++||.+.+ ++.++++. +|++|+.|.+|.
T Consensus 21 A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l~ 86 (273)
T PRK14651 21 AELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGLV 86 (273)
T ss_pred EEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHHH
Confidence 34455 99999999988 589999999999876665444 89998865 66665532 699999999999
Q ss_pred HHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEEccCceEeeccCCCchhhHHhhccCCCce
Q 043104 169 YRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASF 247 (570)
Q Consensus 169 ~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg~f 247 (570)
+++.++| ..|....+||+|.+ ||+.-++.+.||.. .|.|.++++++ +|++++.. +.|+.|++|-+....-
T Consensus 87 ~~~~~~g-----l~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~~ 157 (273)
T PRK14651 87 RRAARLG-----LSGLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPPG 157 (273)
T ss_pred HHHHHCC-----CcchhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCCC
Confidence 9999988 36888889999998 88999999999976 59999999997 89988722 3699999997743222
Q ss_pred EEEEeeEEeeeec
Q 043104 248 GVVLAYKIKLVPV 260 (570)
Q Consensus 248 GVVt~~t~kl~p~ 260 (570)
-||++++|++.|-
T Consensus 158 ~iIl~a~f~l~~~ 170 (273)
T PRK14651 158 HVVTRVRLKLRPS 170 (273)
T ss_pred EEEEEEEEEECCC
Confidence 3999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.99 E-value=1.6e-09 Score=108.89 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=114.6
Q ss_pred CccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHHHH
Q 043104 89 KPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 89 ~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~l~ 168 (570)
.....+.|++.+ + ++|+.+.|+|+|....+...+ +++ -+++++.++++. .+++|++|+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 455667787777 5 899999999999876555432 554 345688888754 479999999999999
Q ss_pred HHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccch-hhceeEEEEEccCceEeeccCCCchhhHHhhccCCCce
Q 043104 169 YRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLS-TDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASF 247 (570)
Q Consensus 169 ~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~-~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg~f 247 (570)
+.+.++| ..|....+||+|.+ ||+.-++.+.||.. .|.|.++++++ |+ + ...|+.|++|-+.. -
T Consensus 82 ~~~~~~g-----l~GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~--~ 146 (257)
T PRK13904 82 NYAKKNN-----LGGFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI--N 146 (257)
T ss_pred HHHHHCC-----CchhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC--C
Confidence 9999988 37888889999998 88899999999976 59999999998 42 2 24699999997742 2
Q ss_pred EEEEeeEEeeeecCc
Q 043104 248 GVVLAYKIKLVPVPE 262 (570)
Q Consensus 248 GVVt~~t~kl~p~p~ 262 (570)
.||++++|||.|..+
T Consensus 147 ~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 147 GVILEARFKKTHGFD 161 (257)
T ss_pred cEEEEEEEEECCCCH
Confidence 499999999988543
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.06 E-value=0.031 Score=53.22 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=51.2
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCC-ccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLS-YISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s-~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l 167 (570)
+...+.|+|.+|+.++++ .+-..++.+||++....- .....+..+||++++... .|..+++.+++|+++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 456799999999998888 233578889999853111 111123689999876443 33334689999999999999
Q ss_pred HHH
Q 043104 168 YYR 170 (570)
Q Consensus 168 ~~~ 170 (570)
.+.
T Consensus 78 ~~~ 80 (171)
T PF00941_consen 78 EES 80 (171)
T ss_dssp HHH
T ss_pred hhc
Confidence 876
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.33 E-value=0.14 Score=52.20 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=83.3
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHH
Q 043104 92 VIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYR 170 (570)
Q Consensus 92 ~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~ 170 (570)
....|+|.+|..++++ +++-..++.+||++..-. .....+.++||++++ .. .+..+++.+++|+++|+.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~-~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNAT-PTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhh-hCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 3578999999887765 343346788999997321 122224789999976 44 34456689999999999999863
Q ss_pred H------HhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhce-----eEEEEEccCceEeeccCCCchhhHHh
Q 043104 171 I------WQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNV-----VDAKIVDVRGRILDRKAMGEDLFWAI 239 (570)
Q Consensus 171 l------~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v-----~~~~vV~a~G~iv~~~~~~~DLfwa~ 239 (570)
. .+.-...+ -...-+..++||.+..+-- ..|.. ++++|+..+|+.+.- .|+|
T Consensus 79 ~~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~--- 141 (258)
T PRK09799 79 RFIPAALREALGFVY-SRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL--- 141 (258)
T ss_pred cccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc---
Confidence 2 11110000 0112245578888764321 12332 567777777754431 3544
Q ss_pred hccCCCceEEEEeeEEe
Q 043104 240 RGGGGASFGVVLAYKIK 256 (570)
Q Consensus 240 rGgggg~fGVVt~~t~k 256 (570)
.|. .=.|||++.+.
T Consensus 142 ~g~---~~Eil~~I~iP 155 (258)
T PRK09799 142 ACP---CDRLLTEIIIP 155 (258)
T ss_pred CCC---CCcEEEEEEcC
Confidence 222 12488888664
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=93.51 E-value=0.15 Score=52.79 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=63.2
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEe-CCCCeEEEcCCCCHHHHH
Q 043104 92 VIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVD-VKDESAWVEAGATLGELY 168 (570)
Q Consensus 92 ~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd-~~~~~v~V~aG~~~~~l~ 168 (570)
-.+.|+|.+|..++++. +. ..++.+||++.. ........+..+||++++... .+. .+++.+++|+++|+.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999998887663 32 357889999963 222222234789999976543 233 234679999999999998
Q ss_pred H--HHHhcCCcC----e-e-cCCCCCcceeccccccC
Q 043104 169 Y--RIWQKSKLH----G-Y-PAGVCPTVGVGGHLSGG 197 (570)
Q Consensus 169 ~--~l~~~g~~l----~-~-~~G~~~~vgvgG~~~gG 197 (570)
+ .+.+.-..| . + ....-+..++||.+..+
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 5 121110000 0 0 12223566789998654
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.71 E-value=0.36 Score=49.11 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=80.1
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHH
Q 043104 93 IITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYR 170 (570)
Q Consensus 93 vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~ 170 (570)
.+.|+|.+|..++++ +++-.-++.+||++.. ... ...+.++||++++ .. .+..+++.+++|+++|+.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~ 77 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN 77 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhC
Confidence 478999999877655 3433356789999974 222 1123688999875 43 34445678999999999998752
Q ss_pred ------HHhcCCcCeecCCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEeeccCCCchhhHHhhccCC
Q 043104 171 ------IWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGG 244 (570)
Q Consensus 171 ------l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGggg 244 (570)
|.+.-...+ -...-+..++||.+..+--.. =-...=..++++|+..+++.+.. .|+|- |. .
T Consensus 78 ~~~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~p~~----D~~~~LlaldA~v~l~~~r~vp~----~dF~~---g~-~ 144 (257)
T TIGR03312 78 ELTPAALKEALGFVY-SRHIRNQATIGGEIAAFQSES----LLLPVLLALKATVVLANASQMDI----EDYLA---SE-Q 144 (257)
T ss_pred cchHHHHHHHHHHhC-CHHHhccccHHHHhhcCCCch----HHHHHHHHcCCEEEEecCcEEeH----HHhcC---CC-C
Confidence 222110010 122235567888886443110 00011122556666666544321 35443 22 1
Q ss_pred CceEEEEeeEEe
Q 043104 245 ASFGVVLAYKIK 256 (570)
Q Consensus 245 g~fGVVt~~t~k 256 (570)
+ -+|+++.+.
T Consensus 145 ~--Ell~~V~iP 154 (257)
T TIGR03312 145 R--ELIVEVIIP 154 (257)
T ss_pred C--cEEEEEEcC
Confidence 1 378887664
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.97 E-value=0.42 Score=52.89 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=66.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l 167 (570)
..-++.|+|.+|+.++++. +. ..++.+||++.. ........+..+||++++... .+..+++.+++|+++|+.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999887753 32 357789999963 222222224689999986544 34445678999999999999
Q ss_pred HHHHHhcCCcC----eecC--CCCCcceeccccccC
Q 043104 168 YYRIWQKSKLH----GYPA--GVCPTVGVGGHLSGG 197 (570)
Q Consensus 168 ~~~l~~~g~~l----~~~~--G~~~~vgvgG~~~gG 197 (570)
.+.+.++=..| ...+ ..-+..+|||.+..+
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 87554431000 0111 223566788888654
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.79 E-value=0.65 Score=48.78 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=61.5
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHH
Q 043104 92 VIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYY 169 (570)
Q Consensus 92 ~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~ 169 (570)
..+.|+|.+|..++++- ++ .-++.+||++.. ..-.....+..+||+.++... .+..+++.+++|+++|+.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47899999998877653 32 346789999852 111112224789999976443 2334567899999999999955
Q ss_pred H---------HHhcCCcCeecCCCCCcceecccccc
Q 043104 170 R---------IWQKSKLHGYPAGVCPTVGVGGHLSG 196 (570)
Q Consensus 170 ~---------l~~~g~~l~~~~G~~~~vgvgG~~~g 196 (570)
. |.+.-...+ -...-...+|||.+.+
T Consensus 82 ~~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCL 116 (321)
T ss_pred ChhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhc
Confidence 2 222110000 1122356689999975
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.65 E-value=0.78 Score=46.79 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCcc-CCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHHHH--
Q 043104 96 PLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYI-SDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELYYR-- 170 (570)
Q Consensus 96 P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~-~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~~~-- 170 (570)
|+|.+|+.++++. +. ..++.+||++.. ..... ...+..+||++++... .++.+++.+++|+++|+.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7788888777764 22 357889999863 21111 1124689999987654 45556789999999999999642
Q ss_pred -------HHhcCCcCeecCCCCCcceeccccccC
Q 043104 171 -------IWQKSKLHGYPAGVCPTVGVGGHLSGG 197 (570)
Q Consensus 171 -------l~~~g~~l~~~~G~~~~vgvgG~~~gG 197 (570)
|.+.-. ..--...-+..++||.+..+
T Consensus 77 i~~~~p~L~~a~~-~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAAS-AIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHH-HhcCHHHhcceecHHhccCc
Confidence 111100 00011223566889998654
No 41
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=87.39 E-value=0.26 Score=50.60 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=24.8
Q ss_pred hhhhhhhccccHHHHHHhhhhcCcCCcccCCCCC
Q 043104 502 KVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSI 535 (570)
Q Consensus 502 ~~~g~~Yfg~N~~RL~~IK~kyDP~n~F~~~qsI 535 (570)
+.| ++.||...+|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 468 567899999999999999999999988877
No 42
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=82.20 E-value=4.7 Score=40.79 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred ccHHHHHHhhhhcCcCCcccCCC
Q 043104 511 GNFDRLVKVKTMVDPENFFRNEQ 533 (570)
Q Consensus 511 ~N~~RL~~IK~kyDP~n~F~~~q 533 (570)
.|+++-.+||+++||+++|.++.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCHH
Confidence 58999999999999999999873
No 43
>PLN02906 xanthine dehydrogenase
Probab=81.05 E-value=2.4 Score=52.95 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHH
Q 043104 91 TVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 91 ~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~ 168 (570)
...+.|+|.+|+.++++- +. .-++.+||++.. ........+.++||++++..+ .+..+++.+++||++|+.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 458899999999887553 22 246788999963 222222234789999986554 344456789999999999999
Q ss_pred HHHHh
Q 043104 169 YRIWQ 173 (570)
Q Consensus 169 ~~l~~ 173 (570)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86443
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=80.10 E-value=3.6 Score=43.61 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=82.4
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccC-CCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYIS-DRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~-~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l 167 (570)
-..++.|.+.+|...++.. .-..++.-|++++.-.-.-. .+-..+|-..++..+ +++...+.+++|+|+++.|.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 3457889999999877542 33466667888864221110 011345556666554 56667789999999999999
Q ss_pred HHHHHhcCCcCee----cCCC--CCcceeccccccCc-cCCCcccccchhhceeEEEEEccCceEeeccCCCchhhHHhh
Q 043104 168 YYRIWQKSKLHGY----PAGV--CPTVGVGGHLSGGG-YGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIR 240 (570)
Q Consensus 168 ~~~l~~~g~~l~~----~~G~--~~~vgvgG~~~gGg-~G~~~~~~G~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~r 240 (570)
+..|.++=..|+- -+|. -+.-++||.+..|. +|-... .=..+++++++-.|+-.+ .-.-+|+|-+++
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtPP-----aLIALgA~ltLr~g~~~R-tlPLe~~Fi~Y~ 352 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTPP-----ALIALGATLTLRSGDGRR-TLPLEDYFIAYG 352 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCCCc-----hhhhcCcEEEEEecCCcc-cccHHHHHHHhh
Confidence 9999765211110 0111 13445777775443 221111 112367788877776443 222358888875
No 45
>PLN00192 aldehyde oxidase
Probab=79.79 E-value=4.1 Score=50.95 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=56.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~ 168 (570)
..-.+.|+|.+|+.++++.....+-.-++..||++..-.-. ...+.++||++++..+ .+..+++.+++||++|+.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 45689999999998776532100123667889999642211 2224789999976554 344456789999999999998
Q ss_pred HHHHh
Q 043104 169 YRIWQ 173 (570)
Q Consensus 169 ~~l~~ 173 (570)
+.+.+
T Consensus 312 ~~l~~ 316 (1344)
T PLN00192 312 EALRE 316 (1344)
T ss_pred HHHHh
Confidence 76554
No 46
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.16 E-value=5.2 Score=49.99 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=55.1
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCccCCCCeEEEEccCCccE-EEeCCCCeEEEcCCCCHHHHH
Q 043104 91 TVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYE-GLSYISDRPFFILDMFNLRSI-DVDVKDESAWVEAGATLGELY 168 (570)
Q Consensus 91 ~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~-g~s~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~~~~l~ 168 (570)
.-.+.|+|.+|+.++++. +. .-++..||++.. ...........+||++++..+ .+..+++.+++|+++|+.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 458999999999887653 32 356788999973 221211123589999986554 344556789999999999998
Q ss_pred HHHH
Q 043104 169 YRIW 172 (570)
Q Consensus 169 ~~l~ 172 (570)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8644
No 47
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=77.33 E-value=2.1 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=17.0
Q ss_pred ccHHHHHHhhhhcCcCCcccCC
Q 043104 511 GNFDRLVKVKTMVDPENFFRNE 532 (570)
Q Consensus 511 ~N~~RL~~IK~kyDP~n~F~~~ 532 (570)
.++++..++|+++||+++|.++
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 7999999999999999999874
No 48
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=73.59 E-value=5.8 Score=38.90 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=18.9
Q ss_pred hhhccc-cHHHHHHhhhhcCcCCcccC
Q 043104 506 EKYFNG-NFDRLVKVKTMVDPENFFRN 531 (570)
Q Consensus 506 ~~Yfg~-N~~RL~~IK~kyDP~n~F~~ 531 (570)
...+++ -++-+++||+.+||+|+++-
T Consensus 219 ~~~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 219 EEEYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp CHHCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred HHhcchHHHHHHHHhhhccCCccCCCC
Confidence 344444 79999999999999999863
No 49
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=73.40 E-value=9.8 Score=35.12 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=64.9
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeC-CCCCCCCCccCCCC-eEEEEccC---CccEEEeCCCCeEEEcCCCCHHHH
Q 043104 93 IITPLQEAHVSAAVICSKQVGFQLKIRSG-GHDYEGLSYISDRP-FFILDMFN---LRSIDVDVKDESAWVEAGATLGEL 167 (570)
Q Consensus 93 vv~P~s~~dV~~~V~~a~~~~~~~~vrgg-Gh~~~g~s~~~~~~-gvvIdl~~---l~~i~vd~~~~~v~V~aG~~~~~l 167 (570)
=+.|++.+.+...+++++.+++|+++.+. |+.+.+.-...... -.++.-.. =|+|++..+ ..+++| |+
T Consensus 9 Evwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~gf~~~~n~iL~p~~~~~~nRi~~plE-~I~t~E------e~ 81 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSGFMSKENKILAPDPFKKENRIRLPLE-RISTIE------EL 81 (165)
T ss_pred ccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEeccCcccCEEeccCCCCCCceEEEEhH-HhhhHh------hh
Confidence 37899999999999999999999999987 88865543322110 12232222 233443322 122222 22
Q ss_pred HHHHHhcCCcCeecCCCCCcceeccccccCccCCCcccccchh----hceeEEEEEccCceEee
Q 043104 168 YYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLST----DNVVDAKIVDVRGRILD 227 (570)
Q Consensus 168 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~gGg~G~~~~~~G~~~----D~v~~~~vV~a~G~iv~ 227 (570)
...=. .| .+.+. ++.+-.-++-+..+-|=..| .+=.+++|-.+||++++
T Consensus 82 ~~~d~-~g-~~ti~---------~d~~~~q~~~psrrDFF~Icrka~qqg~sIrVyM~DgR~ie 134 (165)
T PF03614_consen 82 IVSDF-KG-RLTIH---------PDYFNNQPYKPSRRDFFSICRKAHQQGKSIRVYMADGREIE 134 (165)
T ss_pred ccccc-cc-cEEec---------hhhcccccCCCccchHHHHHHHHHHCCCeEEEEEcCCcEEE
Confidence 11000 01 11111 23333334444444443333 56689999999999997
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=65.91 E-value=18 Score=37.42 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=52.5
Q ss_pred ccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CCccCCCCeEEEEccCCc-c-EEEeCCCCeEEEcCCCCHHH
Q 043104 90 PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEG-LSYISDRPFFILDMFNLR-S-IDVDVKDESAWVEAGATLGE 166 (570)
Q Consensus 90 P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g-~s~~~~~~gvvIdl~~l~-~-i~vd~~~~~v~V~aG~~~~~ 166 (570)
+..+.+|.|.+|...+++ +++ .-++.+|||+... .-.....+.-+||+.++. . ..+..+++.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 556789999888666555 555 6778899999652 111122356789999874 2 23334567799999999999
Q ss_pred HHH
Q 043104 167 LYY 169 (570)
Q Consensus 167 l~~ 169 (570)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 963
No 51
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=59.76 E-value=4.6 Score=43.87 Aligned_cols=25 Identities=40% Similarity=0.849 Sum_probs=21.8
Q ss_pred hhhccccHHHHHHhhhhcCcCCcccCC
Q 043104 506 EKYFNGNFDRLVKVKTMVDPENFFRNE 532 (570)
Q Consensus 506 ~~Yfg~N~~RL~~IK~kyDP~n~F~~~ 532 (570)
++| .|+++-.+||+++||+++|..+
T Consensus 482 ~ky--~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 482 RKY--KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred Hhc--cChHHHHHHHHhcCccchhhhh
Confidence 555 6999999999999999999654
No 52
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=54.27 E-value=66 Score=35.02 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Q 043104 88 LKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGG 122 (570)
Q Consensus 88 ~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggG 122 (570)
+....|+.|+..|-..++.+.++++|+++.-||.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 45789999999999999999999999999999988
No 53
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=47.66 E-value=38 Score=38.44 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=28.1
Q ss_pred hhhhhhcc-ccHHHHHHhhhhcCcCCcccCCCCCCC
Q 043104 503 VYGEKYFN-GNFDRLVKVKTMVDPENFFRNEQSIPT 537 (570)
Q Consensus 503 ~~g~~Yfg-~N~~RL~~IK~kyDP~n~F~~~qsI~~ 537 (570)
.|-..+|+ +.++=+++||+.+||+|+++-..=+||
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 46666776 579999999999999999987665553
No 54
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=46.72 E-value=12 Score=40.71 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=22.6
Q ss_pred hhhhhcc-ccHHHHHHhhhhcCcCCcccC
Q 043104 504 YGEKYFN-GNFDRLVKVKTMVDPENFFRN 531 (570)
Q Consensus 504 ~g~~Yfg-~N~~RL~~IK~kyDP~n~F~~ 531 (570)
|-...|+ ..++-|++||+.+||+|+++-
T Consensus 383 ~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 383 FMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 5555555 479999999999999999863
No 55
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=44.38 E-value=33 Score=38.39 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.6
Q ss_pred hhcc-ccHHHHHHhhhhcCcCCcccCCCCCC
Q 043104 507 KYFN-GNFDRLVKVKTMVDPENFFRNEQSIP 536 (570)
Q Consensus 507 ~Yfg-~N~~RL~~IK~kyDP~n~F~~~qsI~ 536 (570)
.+|+ +.++-+++||+.+||+|+++-..-++
T Consensus 443 ~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 443 AQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 3344 67999999999999999998776664
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.46 E-value=56 Score=34.03 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=40.3
Q ss_pred ceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCC------HHHHHHHHHHHHHcC------CeEEEEeCCC
Q 043104 59 NIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQ------EAHVSAAVICSKQVG------FQLKIRSGGH 123 (570)
Q Consensus 59 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s------~~dV~~~V~~a~~~~------~~~~vrggGh 123 (570)
+.|..|+...|.+.++.. +.|| +....+++|.. +++|.++++.+.+.+ +=+.+||||.
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~-----~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRN-----PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhC-----CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 355566777788876543 3366 34667777765 688999999998654 6677888874
No 57
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=32.82 E-value=26 Score=37.40 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=18.8
Q ss_pred ccc-HHHHHHhhhhcCcCCcccC
Q 043104 510 NGN-FDRLVKVKTMVDPENFFRN 531 (570)
Q Consensus 510 g~N-~~RL~~IK~kyDP~n~F~~ 531 (570)
..+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 456 7888999999999999964
No 58
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=32.66 E-value=1.4e+02 Score=30.66 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=59.6
Q ss_pred cceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCccCCCCeE
Q 043104 58 SNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFF 137 (570)
Q Consensus 58 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~~vrggGh~~~g~s~~~~~~gv 137 (570)
-..+++|+-++-..+.. . ....+++|++++-+...+.|.+-.+.=|||... ... -+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eE
Confidence 46799999887776531 1 267899999999999999999988888999864 112 23
Q ss_pred EEEccCCccE---EEeCCCCeEEEcCCCCHHHHHHHHHhcC
Q 043104 138 ILDMFNLRSI---DVDVKDESAWVEAGATLGELYYRIWQKS 175 (570)
Q Consensus 138 vIdl~~l~~i---~vd~~~~~v~V~aG~~~~~l~~~l~~~g 175 (570)
+.|-..+..+ .++.. =+=|.||++.--+.+-..+|
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 4443211111 22222 13588999987766555555
No 59
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.56 E-value=74 Score=34.82 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=41.2
Q ss_pred ceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCH------HHHHHHHHHHHHc--CCeEEEEeCC
Q 043104 59 NIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQE------AHVSAAVICSKQV--GFQLKIRSGG 122 (570)
Q Consensus 59 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~------~dV~~~V~~a~~~--~~~~~vrggG 122 (570)
+.|..|....+.+.++.. +.||+ .-...++|..+ .+|.++++.+.+. ++=+.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~~--~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTVL--RRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHHH--HhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 456666777888877633 45673 34677888776 8899999888874 6678888888
No 60
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=27.45 E-value=1.5e+02 Score=33.50 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=53.8
Q ss_pred CHHHHhcccCCCCCCCccceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcC-CeEEE-
Q 043104 41 SFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVG-FQLKI- 118 (570)
Q Consensus 41 ~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~-~~~~v- 118 (570)
.+++-.+... . ++.+.++.-+=|+-+.+.. ++..+ ...-.|..++.|-|.++|.++++.|+++- .|+.+
T Consensus 112 rLv~kara~G---~-~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 112 RLVQKARASG---A-PIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred HHHHHHHhcC---C-CcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 3555555432 2 5688999999888887643 33222 23457999999999999999999999973 45554
Q ss_pred ----EeCCC-CCCCC
Q 043104 119 ----RSGGH-DYEGL 128 (570)
Q Consensus 119 ----rggGh-~~~g~ 128 (570)
|+||| ||+.+
T Consensus 183 ~egGraGGHHSweDl 197 (717)
T COG4981 183 WEGGRAGGHHSWEDL 197 (717)
T ss_pred EecCccCCccchhhc
Confidence 33455 46654
No 61
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.54 E-value=94 Score=34.12 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=37.7
Q ss_pred ceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCC------HHHHHHHHHHHHHcC-C--eEEEEeCC
Q 043104 59 NIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQ------EAHVSAAVICSKQVG-F--QLKIRSGG 122 (570)
Q Consensus 59 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s------~~dV~~~V~~a~~~~-~--~~~vrggG 122 (570)
+.|..|......++++. -..||+ .-..+++|+. .++|.++|+.|++.+ + =+..||||
T Consensus 139 GVITS~tgAairDIl~~--~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 139 GVITSPTGAALRDILHT--LSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred EEEcCCchHHHHHHHHH--HHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 45556666666666542 245774 3567777766 479999999999876 3 45556655
No 62
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.88 E-value=81 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCC
Q 043104 102 VSAAVICSKQVGFQLKIRSGGHDYE 126 (570)
Q Consensus 102 V~~~V~~a~~~~~~~~vrggGh~~~ 126 (570)
....++|++++++||.|.|+|.++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567899999999999999999854
No 63
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=20.67 E-value=1.6e+02 Score=31.47 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCcccCHHHHhcccCCCCCCCccceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCe
Q 043104 36 DSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQ 115 (570)
Q Consensus 36 ~~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~ 115 (570)
.+|.++..-|-.-...+.. .-.++.+++..|.. ..|+ +..-|....+.+ .++++.|+++|++
T Consensus 18 ~c~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~--------~~~~-----~~tti~~~~~~~--~~~~~~A~~~~v~ 79 (358)
T cd02875 18 ECPCIEPELCEPIEIGPRF---EFLVFSVNSTNYPN--------YDWS-----KVTTIAIFGDID--DELLCYAHSKGVR 79 (358)
T ss_pred CCCCCCHhhCCCccCCCce---EEEEEEeCCCcCcc--------cccc-----cceEEEecCCCC--HHHHHHHHHcCCE
Confidence 3555566778765544332 22344544433322 2464 444555445544 4778899999999
Q ss_pred EEEEe
Q 043104 116 LKIRS 120 (570)
Q Consensus 116 ~~vrg 120 (570)
+.+.+
T Consensus 80 v~~~~ 84 (358)
T cd02875 80 LVLKG 84 (358)
T ss_pred EEEEC
Confidence 98763
No 64
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=20.24 E-value=1.4e+02 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.3
Q ss_pred cEEEecCCHHHHHHHHHHHHHcCCeEEEEe
Q 043104 91 TVIITPLQEAHVSAAVICSKQVGFQLKIRS 120 (570)
Q Consensus 91 ~~vv~P~s~~dV~~~V~~a~~~~~~~~vrg 120 (570)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 568999999999999999998877888773
No 65
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=20.06 E-value=58 Score=36.81 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.8
Q ss_pred HHHHHHhhhhcCcCCcccCC
Q 043104 513 FDRLVKVKTMVDPENFFRNE 532 (570)
Q Consensus 513 ~~RL~~IK~kyDP~n~F~~~ 532 (570)
+++-.+|.+++||+++|.|+
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 57779999999999999875
Done!